Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1ce' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5007925 --chroot fedora-rawhide-x86_64 --detached
Version: 0.61
PID: 37682
Logging PID: 37683
Task:
{'appstream': False,
 'background': True,
 'build_id': 5007925,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'ab22425bdd5fc39e4b061f55a7c5b8fe3e468e3a',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/bcftools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'bcftools',
 'package_version': '1.15.1-2',
 'project_dirname': 'make-4.4',
 'project_name': 'make-4.4',
 'project_owner': 'djdelorie',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/djdelorie/make-4.4/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'djdelorie/make-4.4--djdelorie',
 'source_json': {},
 'source_type': None,
 'submitter': 'djdelorie',
 'tags': [],
 'task_id': '5007925-fedora-rawhide-x86_64',
 'timeout': 108000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/bcftools /var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/bcftools', '/var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools'...

Running: git checkout ab22425bdd5fc39e4b061f55a7c5b8fe3e468e3a

cmd: ['git', 'checkout', 'ab22425bdd5fc39e4b061f55a7c5b8fe3e468e3a']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools
rc: 0
stdout: 
stderr: Note: switching to 'ab22425bdd5fc39e4b061f55a7c5b8fe3e468e3a'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at ab22425 automatic import of bcftools

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading bcftools-1.15.1.tar.bz2
INFO: Calling: curl -H Pragma: -o bcftools-1.15.1.tar.bz2 --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/djdelorie/make-4.4/bcftools/bcftools-1.15.1.tar.bz2/md5/37e0cbdbcbeb844b8592f4a2acb2fe3f/bcftools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 6755k  100 6755k    0     0  15.0M      0 --:--:-- --:--:-- --:--:-- 14.9M
INFO: Reading stdout from command: md5sum bcftools-1.15.1.tar.bz2

Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools/bcftools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667626114.328037 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools/bcftools.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667626114.328037/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.3
INFO: Mock Version: 3.3
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  30 MB/s | 7.1 MB     00:00    
fedora                                          7.3 MB/s |  65 MB     00:08    
Last metadata expiration check: 0:00:02 ago on Sat Nov  5 05:28:43 2022.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing:
 dnf                          noarch 4.14.0-1.fc38              fedora    480 k
 dnf-plugins-core             noarch 4.3.1-1.fc38               fedora     34 k
Installing dependencies:
 alternatives                 x86_64 1.21-1.fc38                fedora     38 k
 audit-libs                   x86_64 3.0.9-1.fc38               fedora    116 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 bash                         x86_64 5.2.2-2.fc38               fedora    1.8 M
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils                    x86_64 9.1-8.fc38                 fedora    1.1 M
 coreutils-common             x86_64 9.1-8.fc38                 fedora    2.0 M
 crypto-policies              noarch 20221003-1.gitcb1ad32.fc38 fedora     86 k
 curl                         x86_64 7.86.0-2.fc38              fedora    334 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 dbus-libs                    x86_64 1:1.14.4-1.fc38            fedora    156 k
 dnf-data                     noarch 4.14.0-1.fc38              fedora     43 k
 elfutils-default-yama-scope  noarch 0.188-2.fc38               fedora     15 k
 elfutils-libelf              x86_64 0.188-2.fc38               fedora    196 k
 elfutils-libs                x86_64 0.188-2.fc38               fedora    257 k
 expat                        x86_64 2.4.8-2.fc37               fedora    110 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.4                     fedora     11 k
 fedora-release-common        noarch 38-0.4                     fedora     22 k
 fedora-release-identity-basic
                              noarch 38-0.4                     fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file-libs                    x86_64 5.42-4.fc37                fedora    676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 glib2                        x86_64 2.74.1-2.fc38              fedora    2.7 M
 glibc                        x86_64 2.36.9000-11.fc38          fedora    2.1 M
 glibc-common                 x86_64 2.36.9000-11.fc38          fedora    301 k
 glibc-minimal-langpack       x86_64 2.36.9000-11.fc38          fedora     22 k
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnupg2                       x86_64 2.3.8-1.fc38               fedora    2.6 M
 gnutls                       x86_64 3.7.8-8.fc38               fedora    1.1 M
 gpgme                        x86_64 1.17.0-4.fc37              fedora    210 k
 grep                         x86_64 3.8-1.fc38                 fedora    292 k
 ima-evm-utils                x86_64 1.4-6.fc37                 fedora     63 k
 json-c                       x86_64 0.16-3.fc38                fedora     41 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.19.2-11.fc37.1           fedora    727 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-2.fc37               fedora    397 k
 libassuan                    x86_64 2.5.5-5.fc37               fedora     67 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libb2                        x86_64 0.98.1-7.fc37              fedora     25 k
 libblkid                     x86_64 2.38.1-2.fc38              fedora    107 k
 libbrotli                    x86_64 1.0.9-9.fc37               fedora    315 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-3.fc37               fedora     33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcomps                     x86_64 0.1.18-4.fc37              fedora     76 k
 libcurl                      x86_64 7.86.0-2.fc38              fedora    305 k
 libdnf                       x86_64 0.68.0-1.fc38              fedora    673 k
 libevent                     x86_64 2.1.12-7.fc37              fedora    261 k
 libffi                       x86_64 3.4.2-9.fc37               fedora     37 k
 libfsverity                  x86_64 1.4-8.fc37                 fedora     19 k
 libgcc                       x86_64 12.2.1-2.fc38              fedora    106 k
 libgcrypt                    x86_64 1.10.1-4.fc37              fedora    512 k
 libgomp                      x86_64 12.2.1-2.fc38              fedora    293 k
 libgpg-error                 x86_64 1.46-1.fc38                fedora    227 k
 libidn2                      x86_64 2.3.4-1.fc38               fedora    160 k
 libksba                      x86_64 1.6.2-1.fc38               fedora    158 k
 libmodulemd                  x86_64 2.14.0-4.fc37              fedora    234 k
 libmount                     x86_64 2.38.1-2.fc38              fedora    135 k
 libnghttp2                   x86_64 1.50.0-1.fc38              copr_base  75 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpsl                       x86_64 0.21.1-6.fc37              fedora     63 k
 librepo                      x86_64 1.14.4-1.fc38              fedora     94 k
 libreport-filesystem         noarch 2.17.5-2.fc38              fedora     14 k
 libselinux                   x86_64 3.4-5.fc37                 fedora     86 k
 libsemanage                  x86_64 3.4-5.fc37                 fedora    120 k
 libsepol                     x86_64 3.4-3.fc37                 fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-2.fc38              fedora     64 k
 libsolv                      x86_64 0.7.22-3.fc37              fedora    405 k
 libssh                       x86_64 0.10.4-2.fc38              fedora    209 k
 libssh-config                noarch 0.10.4-2.fc38              fedora    8.8 k
 libstdc++                    x86_64 12.2.1-2.fc38              fedora    800 k
 libtasn1                     x86_64 4.18.0-3.fc37              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libuuid                      x86_64 2.38.1-2.fc38              fedora     28 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.30-1.fc38              fedora    118 k
 libxml2                      x86_64 2.10.3-2.fc38              fedora    705 k
 libyaml                      x86_64 0.2.5-8.fc37               fedora     60 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-6.fc38               fedora    131 k
 lz4-libs                     x86_64 1.9.3-5.fc37               fedora     70 k
 mpdecimal                    x86_64 2.5.1-4.fc37               fedora    102 k
 mpfr                         x86_64 4.1.0-10.fc37              fedora    331 k
 ncurses-base                 noarch 6.3-3.20220501.fc37        fedora     86 k
 ncurses-libs                 x86_64 6.3-3.20220501.fc37        fedora    329 k
 nettle                       x86_64 3.8-2.fc37                 fedora    414 k
 npth                         x86_64 1.6-10.fc38                fedora     24 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.5-6.fc38             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-3.fc37              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-3.fc37              fedora    138 k
 pcre2                        x86_64 10.40-1.fc37.1             fedora    236 k
 pcre2-syntax                 noarch 10.40-1.fc37.1             fedora    142 k
 popt                         x86_64 1.19-1.fc38                fedora     66 k
 publicsuffix-list-dafsa      noarch 20210518-5.fc37            fedora     58 k
 python-pip-wheel             noarch 22.2.2-2.fc38              fedora    1.4 M
 python-setuptools-wheel      noarch 65.5.0-1.fc38              fedora    715 k
 python3                      x86_64 3.11.0-1.fc38              fedora     27 k
 python3-dateutil             noarch 1:2.8.2-4.fc38             copr_base 350 k
 python3-dbus                 x86_64 1.3.2-1.fc38               fedora    157 k
 python3-distro               noarch 1.8.0-1.fc38               fedora     49 k
 python3-dnf                  noarch 4.14.0-1.fc38              fedora    607 k
 python3-dnf-plugins-core     noarch 4.3.1-1.fc38               fedora    277 k
 python3-gpg                  x86_64 1.17.0-4.fc37              fedora    298 k
 python3-hawkey               x86_64 0.68.0-1.fc38              fedora    108 k
 python3-libcomps             x86_64 0.1.18-4.fc37              fedora     48 k
 python3-libdnf               x86_64 0.68.0-1.fc38              fedora    818 k
 python3-libs                 x86_64 3.11.0-1.fc38              fedora    9.6 M
 python3-rpm                  x86_64 4.18.0-3.fc38              fedora     94 k
 python3-six                  noarch 1.16.0-8.fc37              fedora     42 k
 readline                     x86_64 8.2-2.fc38                 fedora    211 k
 rpm                          x86_64 4.18.0-3.fc38              fedora    570 k
 rpm-build-libs               x86_64 4.18.0-3.fc38              fedora     94 k
 rpm-libs                     x86_64 4.18.0-3.fc38              fedora    320 k
 rpm-sign-libs                x86_64 4.18.0-3.fc38              fedora     27 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 setup                        noarch 2.14.2-1.fc38              fedora    151 k
 shadow-utils                 x86_64 2:4.12.3-3.fc38            fedora    1.3 M
 sqlite-libs                  x86_64 3.39.4-1.fc38              fedora    658 k
 systemd-libs                 x86_64 252-587.fc38               fedora    631 k
 tpm2-tss                     x86_64 3.2.0-3.fc37               fedora    600 k
 tzdata                       noarch 2022f-1.fc38               fedora    715 k
 xz-libs                      x86_64 5.2.7-1.fc38               fedora     93 k
 zchunk-libs                  x86_64 1.2.3-1.fc38               fedora     51 k
 zlib                         x86_64 1.2.12-5.fc38              fedora     94 k

Transaction Summary
================================================================================
Install  136 Packages

Total download size: 56 M
Installed size: 196 M
Downloading Packages:
(1/136): libnghttp2-1.50.0-1.fc38.x86_64.rpm    1.4 MB/s |  75 kB     00:00    
(2/136): alternatives-1.21-1.fc38.x86_64.rpm    631 kB/s |  38 kB     00:00    
(3/136): python3-dateutil-2.8.2-4.fc38.noarch.r 5.5 MB/s | 350 kB     00:00    
(4/136): basesystem-11-14.fc37.noarch.rpm       370 kB/s | 7.0 kB     00:00    
(5/136): bzip2-libs-1.0.8-12.fc37.x86_64.rpm    2.1 MB/s |  41 kB     00:00    
(6/136): audit-libs-3.0.9-1.fc38.x86_64.rpm     1.2 MB/s | 116 kB     00:00    
(7/136): ca-certificates-2022.2.54-5.fc37.noarc 6.1 MB/s | 829 kB     00:00    
(8/136): coreutils-9.1-8.fc38.x86_64.rpm        6.5 MB/s | 1.1 MB     00:00    
(9/136): bash-5.2.2-2.fc38.x86_64.rpm           6.8 MB/s | 1.8 MB     00:00    
(10/136): crypto-policies-20221003-1.gitcb1ad32 3.9 MB/s |  86 kB     00:00    
(11/136): curl-7.86.0-2.fc38.x86_64.rpm         8.7 MB/s | 334 kB     00:00    
(12/136): dbus-libs-1.14.4-1.fc38.x86_64.rpm    9.0 MB/s | 156 kB     00:00    
(13/136): coreutils-common-9.1-8.fc38.x86_64.rp 7.0 MB/s | 2.0 MB     00:00    
(14/136): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 3.9 MB/s | 792 kB     00:00    
(15/136): dnf-4.14.0-1.fc38.noarch.rpm          2.8 MB/s | 480 kB     00:00    
(16/136): dnf-data-4.14.0-1.fc38.noarch.rpm     1.7 MB/s |  43 kB     00:00    
(17/136): dnf-plugins-core-4.3.1-1.fc38.noarch. 1.2 MB/s |  34 kB     00:00    
(18/136): elfutils-libelf-0.188-2.fc38.x86_64.r 2.6 MB/s | 196 kB     00:00    
(19/136): expat-2.4.8-2.fc37.x86_64.rpm         2.9 MB/s | 110 kB     00:00    
(20/136): elfutils-libs-0.188-2.fc38.x86_64.rpm 2.5 MB/s | 257 kB     00:00    
(21/136): elfutils-default-yama-scope-0.188-2.f 119 kB/s |  15 kB     00:00    
(22/136): fedora-release-38-0.4.noarch.rpm      596 kB/s |  11 kB     00:00    
(23/136): fedora-release-common-38-0.4.noarch.r 1.4 MB/s |  22 kB     00:00    
(24/136): fedora-gpg-keys-38-0.3.noarch.rpm     3.0 MB/s | 125 kB     00:00    
(25/136): fedora-repos-38-0.3.noarch.rpm        620 kB/s |  10 kB     00:00    
(26/136): fedora-release-identity-basic-38-0.4. 622 kB/s |  12 kB     00:00    
(27/136): fedora-repos-rawhide-38-0.3.noarch.rp 514 kB/s | 9.7 kB     00:00    
(28/136): findutils-4.9.0-2.fc37.x86_64.rpm     5.1 MB/s | 492 kB     00:00    
(29/136): file-libs-5.42-4.fc37.x86_64.rpm      3.8 MB/s | 676 kB     00:00    
(30/136): gdbm-libs-1.23-2.fc37.x86_64.rpm      3.0 MB/s |  56 kB     00:00    
(31/136): gawk-5.1.1-4.fc37.x86_64.rpm          5.2 MB/s | 1.0 MB     00:00    
(32/136): filesystem-3.18-2.fc37.x86_64.rpm     2.9 MB/s | 1.1 MB     00:00    
(33/136): glibc-common-2.36.9000-11.fc38.x86_64 3.2 MB/s | 301 kB     00:00    
(34/136): glibc-minimal-langpack-2.36.9000-11.f 1.1 MB/s |  22 kB     00:00    
(35/136): gmp-6.2.1-3.fc37.x86_64.rpm           3.3 MB/s | 315 kB     00:00    
(36/136): glibc-2.36.9000-11.fc38.x86_64.rpm    5.9 MB/s | 2.1 MB     00:00    
(37/136): glib2-2.74.1-2.fc38.x86_64.rpm        4.8 MB/s | 2.7 MB     00:00    
(38/136): gpgme-1.17.0-4.fc37.x86_64.rpm        4.5 MB/s | 210 kB     00:00    
(39/136): gnutls-3.7.8-8.fc38.x86_64.rpm        6.5 MB/s | 1.1 MB     00:00    
(40/136): ima-evm-utils-1.4-6.fc37.x86_64.rpm   3.0 MB/s |  63 kB     00:00    
(41/136): json-c-0.16-3.fc38.x86_64.rpm         2.0 MB/s |  41 kB     00:00    
(42/136): grep-3.8-1.fc38.x86_64.rpm            4.8 MB/s | 292 kB     00:00    
(43/136): keyutils-libs-1.6.1-5.fc37.x86_64.rpm 1.6 MB/s |  31 kB     00:00    
(44/136): libacl-2.3.1-4.fc37.x86_64.rpm        1.2 MB/s |  23 kB     00:00    
(45/136): libarchive-3.6.1-2.fc37.x86_64.rpm    5.2 MB/s | 397 kB     00:00    
(46/136): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm 5.8 MB/s | 727 kB     00:00    
(47/136): libassuan-2.5.5-5.fc37.x86_64.rpm     3.4 MB/s |  67 kB     00:00    
(48/136): libattr-2.5.1-5.fc37.x86_64.rpm       1.1 MB/s |  18 kB     00:00    
(49/136): libb2-0.98.1-7.fc37.x86_64.rpm        1.3 MB/s |  25 kB     00:00    
(50/136): libblkid-2.38.1-2.fc38.x86_64.rpm     3.4 MB/s | 107 kB     00:00    
(51/136): libcap-2.48-5.fc37.x86_64.rpm         4.1 MB/s |  67 kB     00:00    
(52/136): libbrotli-1.0.9-9.fc37.x86_64.rpm     5.4 MB/s | 315 kB     00:00    
(53/136): libcap-ng-0.8.3-3.fc37.x86_64.rpm     2.0 MB/s |  33 kB     00:00    
(54/136): libcomps-0.1.18-4.fc37.x86_64.rpm     4.5 MB/s |  76 kB     00:00    
(55/136): libcom_err-1.46.5-3.fc37.x86_64.rpm   1.3 MB/s |  25 kB     00:00    
(56/136): libcurl-7.86.0-2.fc38.x86_64.rpm      4.7 MB/s | 305 kB     00:00    
(57/136): gnupg2-2.3.8-1.fc38.x86_64.rpm        4.1 MB/s | 2.6 MB     00:00    
(58/136): libevent-2.1.12-7.fc37.x86_64.rpm     4.4 MB/s | 261 kB     00:00    
(59/136): libdnf-0.68.0-1.fc38.x86_64.rpm       5.3 MB/s | 673 kB     00:00    
(60/136): libffi-3.4.2-9.fc37.x86_64.rpm        1.9 MB/s |  37 kB     00:00    
(61/136): libfsverity-1.4-8.fc37.x86_64.rpm     1.2 MB/s |  19 kB     00:00    
(62/136): libgcc-12.2.1-2.fc38.x86_64.rpm       4.8 MB/s | 106 kB     00:00    
(63/136): libgomp-12.2.1-2.fc38.x86_64.rpm      5.9 MB/s | 293 kB     00:00    
(64/136): libgpg-error-1.46-1.fc38.x86_64.rpm   5.6 MB/s | 227 kB     00:00    
(65/136): libidn2-2.3.4-1.fc38.x86_64.rpm       5.0 MB/s | 160 kB     00:00    
(66/136): libksba-1.6.2-1.fc38.x86_64.rpm       3.7 MB/s | 158 kB     00:00    
(67/136): libgcrypt-1.10.1-4.fc37.x86_64.rpm    4.1 MB/s | 512 kB     00:00    
(68/136): libmount-2.38.1-2.fc38.x86_64.rpm     4.5 MB/s | 135 kB     00:00    
(69/136): libnsl2-2.0.0-4.fc37.x86_64.rpm       1.0 MB/s |  30 kB     00:00    
(70/136): libpsl-0.21.1-6.fc37.x86_64.rpm       2.4 MB/s |  63 kB     00:00    
(71/136): libreport-filesystem-2.17.5-2.fc38.no 480 kB/s |  14 kB     00:00    
(72/136): libselinux-3.4-5.fc37.x86_64.rpm      4.3 MB/s |  86 kB     00:00    
(73/136): libsemanage-3.4-5.fc37.x86_64.rpm     5.6 MB/s | 120 kB     00:00    
(74/136): libsepol-3.4-3.fc37.x86_64.rpm        4.8 MB/s | 322 kB     00:00    
(75/136): libsigsegv-2.14-3.fc37.x86_64.rpm     1.4 MB/s |  27 kB     00:00    
(76/136): libsmartcols-2.38.1-2.fc38.x86_64.rpm 3.1 MB/s |  64 kB     00:00    
(77/136): libsolv-0.7.22-3.fc37.x86_64.rpm      5.9 MB/s | 405 kB     00:00    
(78/136): libmodulemd-2.14.0-4.fc37.x86_64.rpm  714 kB/s | 234 kB     00:00    
(79/136): libssh-config-0.10.4-2.fc38.noarch.rp 391 kB/s | 8.8 kB     00:00    
(80/136): libssh-0.10.4-2.fc38.x86_64.rpm       2.7 MB/s | 209 kB     00:00    
(81/136): librepo-1.14.4-1.fc38.x86_64.rpm      275 kB/s |  94 kB     00:00    
(82/136): libtasn1-4.18.0-3.fc37.x86_64.rpm     3.7 MB/s |  75 kB     00:00    
(83/136): libtirpc-1.3.3-0.fc37.x86_64.rpm      2.0 MB/s |  93 kB     00:00    
(84/136): libuuid-2.38.1-2.fc38.x86_64.rpm      1.2 MB/s |  28 kB     00:00    
(85/136): libverto-0.3.2-4.fc37.x86_64.rpm      1.1 MB/s |  21 kB     00:00    
(86/136): libxcrypt-4.4.30-1.fc38.x86_64.rpm    3.0 MB/s | 118 kB     00:00    
(87/136): libunistring-1.0-2.fc37.x86_64.rpm    4.3 MB/s | 549 kB     00:00    
(88/136): libstdc++-12.2.1-2.fc38.x86_64.rpm    4.1 MB/s | 800 kB     00:00    
(89/136): libyaml-0.2.5-8.fc37.x86_64.rpm       2.9 MB/s |  60 kB     00:00    
(90/136): lua-libs-5.4.4-6.fc38.x86_64.rpm      3.4 MB/s | 131 kB     00:00    
(91/136): libzstd-1.5.2-3.fc37.x86_64.rpm       5.8 MB/s | 294 kB     00:00    
(92/136): lz4-libs-1.9.3-5.fc37.x86_64.rpm      3.6 MB/s |  70 kB     00:00    
(93/136): mpdecimal-2.5.1-4.fc37.x86_64.rpm     6.1 MB/s | 102 kB     00:00    
(94/136): ncurses-base-6.3-3.20220501.fc37.noar 2.1 MB/s |  86 kB     00:00    
(95/136): mpfr-4.1.0-10.fc37.x86_64.rpm         3.8 MB/s | 331 kB     00:00    
(96/136): libxml2-2.10.3-2.fc38.x86_64.rpm      3.8 MB/s | 705 kB     00:00    
(97/136): npth-1.6-10.fc38.x86_64.rpm           906 kB/s |  24 kB     00:00    
(98/136): ncurses-libs-6.3-3.20220501.fc37.x86_ 3.7 MB/s | 329 kB     00:00    
(99/136): openldap-2.6.3-1.fc38.x86_64.rpm      3.9 MB/s | 254 kB     00:00    
(100/136): nettle-3.8-2.fc37.x86_64.rpm         2.9 MB/s | 414 kB     00:00    
(101/136): p11-kit-trust-0.24.1-3.fc37.x86_64.r 3.5 MB/s | 138 kB     00:00    
(102/136): p11-kit-0.24.1-3.fc37.x86_64.rpm     4.4 MB/s | 376 kB     00:00    
(103/136): pcre2-syntax-10.40-1.fc37.1.noarch.r 3.7 MB/s | 142 kB     00:00    
(104/136): popt-1.19-1.fc38.x86_64.rpm          3.4 MB/s |  66 kB     00:00    
(105/136): pcre2-10.40-1.fc37.1.x86_64.rpm      3.1 MB/s | 236 kB     00:00    
(106/136): publicsuffix-list-dafsa-20210518-5.f 3.0 MB/s |  58 kB     00:00    
(107/136): python-setuptools-wheel-65.5.0-1.fc3 6.2 MB/s | 715 kB     00:00    
(108/136): python3-3.11.0-1.fc38.x86_64.rpm     1.4 MB/s |  27 kB     00:00    
(109/136): python3-dbus-1.3.2-1.fc38.x86_64.rpm 4.1 MB/s | 157 kB     00:00    
(110/136): python3-distro-1.8.0-1.fc38.noarch.r 2.5 MB/s |  49 kB     00:00    
(111/136): python3-dnf-4.14.0-1.fc38.noarch.rpm 7.6 MB/s | 607 kB     00:00    
(112/136): openssl-libs-3.0.5-6.fc38.x86_64.rpm 4.0 MB/s | 2.1 MB     00:00    
(113/136): python3-dnf-plugins-core-4.3.1-1.fc3 6.3 MB/s | 277 kB     00:00    
(114/136): python3-hawkey-0.68.0-1.fc38.x86_64. 5.4 MB/s | 108 kB     00:00    
(115/136): python-pip-wheel-22.2.2-2.fc38.noarc 4.0 MB/s | 1.4 MB     00:00    
(116/136): python3-libcomps-0.1.18-4.fc37.x86_6 2.2 MB/s |  48 kB     00:00    
(117/136): python3-gpg-1.17.0-4.fc37.x86_64.rpm 3.9 MB/s | 298 kB     00:00    
(118/136): python3-rpm-4.18.0-3.fc38.x86_64.rpm 2.9 MB/s |  94 kB     00:00    
(119/136): python3-six-1.16.0-8.fc37.noarch.rpm 2.6 MB/s |  42 kB     00:00    
(120/136): readline-8.2-2.fc38.x86_64.rpm       2.9 MB/s | 211 kB     00:00    
(121/136): python3-libdnf-0.68.0-1.fc38.x86_64. 4.0 MB/s | 818 kB     00:00    
(122/136): rpm-build-libs-4.18.0-3.fc38.x86_64. 2.2 MB/s |  94 kB     00:00    
(123/136): rpm-libs-4.18.0-3.fc38.x86_64.rpm    4.2 MB/s | 320 kB     00:00    
(124/136): rpm-sign-libs-4.18.0-3.fc38.x86_64.r 1.2 MB/s |  27 kB     00:00    
(125/136): rpm-4.18.0-3.fc38.x86_64.rpm         3.2 MB/s | 570 kB     00:00    
(126/136): setup-2.14.2-1.fc38.noarch.rpm       3.1 MB/s | 151 kB     00:00    
(127/136): sed-4.8-11.fc37.x86_64.rpm           3.9 MB/s | 306 kB     00:00    
(128/136): sqlite-libs-3.39.4-1.fc38.x86_64.rpm 3.3 MB/s | 658 kB     00:00    
(129/136): shadow-utils-4.12.3-3.fc38.x86_64.rp 3.7 MB/s | 1.3 MB     00:00    
(130/136): systemd-libs-252-587.fc38.x86_64.rpm 3.7 MB/s | 631 kB     00:00    
(131/136): tpm2-tss-3.2.0-3.fc37.x86_64.rpm     4.4 MB/s | 600 kB     00:00    
(132/136): xz-libs-5.2.7-1.fc38.x86_64.rpm      3.0 MB/s |  93 kB     00:00    
(133/136): zchunk-libs-1.2.3-1.fc38.x86_64.rpm  3.2 MB/s |  51 kB     00:00    
(134/136): zlib-1.2.12-5.fc38.x86_64.rpm        3.1 MB/s |  94 kB     00:00    
(135/136): tzdata-2022f-1.fc38.noarch.rpm       3.8 MB/s | 715 kB     00:00    
(136/136): python3-libs-3.11.0-1.fc38.x86_64.rp 7.3 MB/s | 9.6 MB     00:01    
--------------------------------------------------------------------------------
Total                                            12 MB/s |  56 MB     00:04     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                          1/1 
  Preparing        :                                                        1/1 
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  Installing       : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc     2/136 
  Running scriptlet: crypto-policies-20221003-1.gitcb1ad32.fc38.noarc     2/136 
  Installing       : tzdata-2022f-1.fc38.noarch                           3/136 
  Installing       : fedora-release-identity-basic-38-0.4.noarch          4/136 
  Installing       : python-setuptools-wheel-65.5.0-1.fc38.noarch         5/136 
  Installing       : publicsuffix-list-dafsa-20210518-5.fc37.noarch       6/136 
  Installing       : pcre2-syntax-10.40-1.fc37.1.noarch                   7/136 
  Installing       : ncurses-base-6.3-3.20220501.fc37.noarch              8/136 
  Installing       : libssh-config-0.10.4-2.fc38.noarch                   9/136 
  Installing       : libreport-filesystem-2.17.5-2.fc38.noarch           10/136 
  Installing       : dnf-data-4.14.0-1.fc38.noarch                       11/136 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : fedora-gpg-keys-38-0.3.noarch                       12/136 
  Installing       : fedora-release-38-0.4.noarch                        13/136 
  Installing       : fedora-release-common-38-0.4.noarch                 14/136 
  Installing       : fedora-repos-rawhide-38-0.3.noarch                  15/136 
  Installing       : fedora-repos-38-0.3.noarch                          16/136 
  Installing       : setup-2.14.2-1.fc38.noarch                          17/136 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.2-1.fc38.noarch                          17/136 
  Installing       : filesystem-3.18-2.fc37.x86_64                       18/136 
  Installing       : basesystem-11-14.fc37.noarch                        19/136 
  Installing       : glibc-minimal-langpack-2.36.9000-11.fc38.x86_64     20/136 
  Installing       : glibc-common-2.36.9000-11.fc38.x86_64               21/136 
  Running scriptlet: glibc-2.36.9000-11.fc38.x86_64                      22/136 
  Installing       : glibc-2.36.9000-11.fc38.x86_64                      22/136 
  Running scriptlet: glibc-2.36.9000-11.fc38.x86_64                      22/136 
  Installing       : ncurses-libs-6.3-3.20220501.fc37.x86_64             23/136 
  Installing       : bash-5.2.2-2.fc38.x86_64                            24/136 
  Running scriptlet: bash-5.2.2-2.fc38.x86_64                            24/136 
  Installing       : zlib-1.2.12-5.fc38.x86_64                           25/136 
  Installing       : bzip2-libs-1.0.8-12.fc37.x86_64                     26/136 
  Installing       : xz-libs-5.2.7-1.fc38.x86_64                         27/136 
  Installing       : libzstd-1.5.2-3.fc37.x86_64                         28/136 
  Installing       : sqlite-libs-3.39.4-1.fc38.x86_64                    29/136 
  Installing       : libcap-2.48-5.fc37.x86_64                           30/136 
  Installing       : gmp-1:6.2.1-3.fc37.x86_64                           31/136 
  Installing       : libgpg-error-1.46-1.fc38.x86_64                     32/136 
  Installing       : popt-1.19-1.fc38.x86_64                             33/136 
  Installing       : libxml2-2.10.3-2.fc38.x86_64                        34/136 
  Installing       : libstdc++-12.2.1-2.fc38.x86_64                      35/136 
  Installing       : lua-libs-5.4.4-6.fc38.x86_64                        36/136 
  Installing       : elfutils-libelf-0.188-2.fc38.x86_64                 37/136 
  Installing       : file-libs-5.42-4.fc37.x86_64                        38/136 
  Installing       : readline-8.2-2.fc38.x86_64                          39/136 
  Installing       : libattr-2.5.1-5.fc37.x86_64                         40/136 
  Installing       : libacl-2.3.1-4.fc37.x86_64                          41/136 
  Installing       : libffi-3.4.2-9.fc37.x86_64                          42/136 
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  Installing       : libunistring-1.0-2.fc37.x86_64                      44/136 
  Installing       : libidn2-2.3.4-1.fc38.x86_64                         45/136 
  Installing       : libuuid-2.38.1-2.fc38.x86_64                        46/136 
  Installing       : libxcrypt-4.4.30-1.fc38.x86_64                      47/136 
  Installing       : pcre2-10.40-1.fc37.1.x86_64                         48/136 
  Installing       : libassuan-2.5.5-5.fc37.x86_64                       49/136 
  Installing       : expat-2.4.8-2.fc37.x86_64                           50/136 
  Installing       : gdbm-libs-1:1.23-2.fc37.x86_64                      51/136 
  Installing       : json-c-0.16-3.fc38.x86_64                           52/136 
  Installing       : keyutils-libs-1.6.1-5.fc37.x86_64                   53/136 
  Installing       : libcom_err-1.46.5-3.fc37.x86_64                     54/136 
  Installing       : libgomp-12.2.1-2.fc38.x86_64                        55/136 
  Installing       : libsepol-3.4-3.fc37.x86_64                          56/136 
  Installing       : libselinux-3.4-5.fc37.x86_64                        57/136 
  Installing       : sed-4.8-11.fc37.x86_64                              58/136 
  Installing       : libsmartcols-2.38.1-2.fc38.x86_64                   59/136 
  Installing       : libtasn1-4.18.0-3.fc37.x86_64                       60/136 
  Installing       : lz4-libs-1.9.3-5.fc37.x86_64                        61/136 
  Installing       : systemd-libs-252-587.fc38.x86_64                    62/136 
  Installing       : dbus-libs-1:1.14.4-1.fc38.x86_64                    63/136 
  Installing       : findutils-1:4.9.0-2.fc37.x86_64                     64/136 
  Installing       : libb2-0.98.1-7.fc37.x86_64                          65/136 
  Installing       : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 66/136 
  Installing       : libcomps-0.1.18-4.fc37.x86_64                       67/136 
  Installing       : grep-3.8-1.fc38.x86_64                              68/136 
  Installing       : libblkid-2.38.1-2.fc38.x86_64                       69/136 
  Installing       : libmount-2.38.1-2.fc38.x86_64                       70/136 
  Installing       : libpsl-0.21.1-6.fc37.x86_64                         71/136 
  Installing       : mpdecimal-2.5.1-4.fc37.x86_64                       72/136 
  Installing       : libgcrypt-1.10.1-4.fc37.x86_64                      73/136 
  Installing       : libksba-1.6.2-1.fc38.x86_64                         74/136 
  Installing       : mpfr-4.1.0-10.fc37.x86_64                           75/136 
  Installing       : nettle-3.8-2.fc37.x86_64                            76/136 
  Installing       : elfutils-default-yama-scope-0.188-2.fc38.noarch     77/136 
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  Installing       : elfutils-libs-0.188-2.fc38.x86_64                   78/136 
  Installing       : libnghttp2-1.50.0-1.fc38.x86_64                     79/136 
  Installing       : alternatives-1.21-1.fc38.x86_64                     80/136 
  Installing       : p11-kit-trust-0.24.1-3.fc37.x86_64                  81/136 
  Running scriptlet: p11-kit-trust-0.24.1-3.fc37.x86_64                  81/136 
  Installing       : gnutls-3.7.8-8.fc38.x86_64                          82/136 
  Installing       : glib2-2.74.1-2.fc38.x86_64                          83/136 
  Installing       : libbrotli-1.0.9-9.fc37.x86_64                       84/136 
  Installing       : libcap-ng-0.8.3-3.fc37.x86_64                       85/136 
  Installing       : audit-libs-3.0.9-1.fc38.x86_64                      86/136 
  Installing       : libsemanage-3.4-5.fc37.x86_64                       87/136 
  Installing       : shadow-utils-2:4.12.3-3.fc38.x86_64                 88/136 
  Installing       : libsigsegv-2.14-3.fc37.x86_64                       89/136 
  Installing       : gawk-5.1.1-4.fc37.x86_64                            90/136 
  Installing       : libverto-0.3.2-4.fc37.x86_64                        91/136 
  Installing       : libyaml-0.2.5-8.fc37.x86_64                         92/136 
  Installing       : npth-1.6-10.fc38.x86_64                             93/136 
  Installing       : coreutils-common-9.1-8.fc38.x86_64                  94/136 
  Installing       : openssl-libs-1:3.0.5-6.fc38.x86_64                  95/136 
  Installing       : coreutils-9.1-8.fc38.x86_64                         96/136 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             97/136 
  Installing       : ca-certificates-2022.2.54-5.fc37.noarch             97/136 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch             97/136 
  Installing       : rpm-libs-4.18.0-3.fc38.x86_64                       98/136 
  Installing       : krb5-libs-1.19.2-11.fc37.1.x86_64                   99/136 
  Installing       : libtirpc-1.3.3-0.fc37.x86_64                       100/136 
  Installing       : libmodulemd-2.14.0-4.fc37.x86_64                   101/136 
  Installing       : libfsverity-1.4-8.fc37.x86_64                      102/136 
  Installing       : zchunk-libs-1.2.3-1.fc38.x86_64                    103/136 
  Installing       : libsolv-0.7.22-3.fc37.x86_64                       104/136 
  Installing       : libnsl2-2.0.0-4.fc37.x86_64                        105/136 
  Installing       : libssh-0.10.4-2.fc38.x86_64                        106/136 
  Installing       : rpm-build-libs-4.18.0-3.fc38.x86_64                107/136 
  Installing       : python-pip-wheel-22.2.2-2.fc38.noarch              108/136 
  Installing       : python3-3.11.0-1.fc38.x86_64                       109/136 
  Installing       : python3-libs-3.11.0-1.fc38.x86_64                  110/136 
  Installing       : python3-dbus-1.3.2-1.fc38.x86_64                   111/136 
  Installing       : python3-libcomps-0.1.18-4.fc37.x86_64              112/136 
  Installing       : python3-distro-1.8.0-1.fc38.noarch                 113/136 
  Installing       : python3-six-1.16.0-8.fc37.noarch                   114/136 
  Installing       : python3-dateutil-1:2.8.2-4.fc38.noarch             115/136 
  Installing       : libarchive-3.6.1-2.fc37.x86_64                     116/136 
  Installing       : libevent-2.1.12-7.fc37.x86_64                      117/136 
  Installing       : openldap-2.6.3-1.fc38.x86_64                       118/136 
  Installing       : libcurl-7.86.0-2.fc38.x86_64                       119/136 
  Installing       : gnupg2-2.3.8-1.fc38.x86_64                         120/136 
  Installing       : gpgme-1.17.0-4.fc37.x86_64                         121/136 
  Installing       : librepo-1.14.4-1.fc38.x86_64                       122/136 
  Installing       : libdnf-0.68.0-1.fc38.x86_64                        123/136 
  Installing       : python3-libdnf-0.68.0-1.fc38.x86_64                124/136 
  Installing       : python3-hawkey-0.68.0-1.fc38.x86_64                125/136 
  Installing       : python3-gpg-1.17.0-4.fc37.x86_64                   126/136 
  Installing       : curl-7.86.0-2.fc38.x86_64                          127/136 
  Running scriptlet: tpm2-tss-3.2.0-3.fc37.x86_64                       128/136 
  Installing       : tpm2-tss-3.2.0-3.fc37.x86_64                       128/136 
  Installing       : ima-evm-utils-1.4-6.fc37.x86_64                    129/136 
  Installing       : rpm-sign-libs-4.18.0-3.fc38.x86_64                 130/136 
  Installing       : python3-rpm-4.18.0-3.fc38.x86_64                   131/136 
  Installing       : python3-dnf-4.14.0-1.fc38.noarch                   132/136 
  Installing       : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       133/136 
  Installing       : dnf-plugins-core-4.3.1-1.fc38.noarch               134/136 
  Installing       : dnf-4.14.0-1.fc38.noarch                           135/136 
  Running scriptlet: dnf-4.14.0-1.fc38.noarch                           135/136 
  Running scriptlet: rpm-4.18.0-3.fc38.x86_64                           136/136 
  Installing       : rpm-4.18.0-3.fc38.x86_64                           136/136 
  Running scriptlet: filesystem-3.18-2.fc37.x86_64                      136/136 
  Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch            136/136 
  Running scriptlet: rpm-4.18.0-3.fc38.x86_64                           136/136 
  Verifying        : libnghttp2-1.50.0-1.fc38.x86_64                      1/136 
  Verifying        : python3-dateutil-1:2.8.2-4.fc38.noarch               2/136 
  Verifying        : alternatives-1.21-1.fc38.x86_64                      3/136 
  Verifying        : audit-libs-3.0.9-1.fc38.x86_64                       4/136 
  Verifying        : basesystem-11-14.fc37.noarch                         5/136 
  Verifying        : bash-5.2.2-2.fc38.x86_64                             6/136 
  Verifying        : bzip2-libs-1.0.8-12.fc37.x86_64                      7/136 
  Verifying        : ca-certificates-2022.2.54-5.fc37.noarch              8/136 
  Verifying        : coreutils-9.1-8.fc38.x86_64                          9/136 
  Verifying        : coreutils-common-9.1-8.fc38.x86_64                  10/136 
  Verifying        : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc    11/136 
  Verifying        : curl-7.86.0-2.fc38.x86_64                           12/136 
  Verifying        : cyrus-sasl-lib-2.1.28-8.fc38.x86_64                 13/136 
  Verifying        : dbus-libs-1:1.14.4-1.fc38.x86_64                    14/136 
  Verifying        : dnf-4.14.0-1.fc38.noarch                            15/136 
  Verifying        : dnf-data-4.14.0-1.fc38.noarch                       16/136 
  Verifying        : dnf-plugins-core-4.3.1-1.fc38.noarch                17/136 
  Verifying        : elfutils-default-yama-scope-0.188-2.fc38.noarch     18/136 
  Verifying        : elfutils-libelf-0.188-2.fc38.x86_64                 19/136 
  Verifying        : elfutils-libs-0.188-2.fc38.x86_64                   20/136 
  Verifying        : expat-2.4.8-2.fc37.x86_64                           21/136 
  Verifying        : fedora-gpg-keys-38-0.3.noarch                       22/136 
  Verifying        : fedora-release-38-0.4.noarch                        23/136 
  Verifying        : fedora-release-common-38-0.4.noarch                 24/136 
  Verifying        : fedora-release-identity-basic-38-0.4.noarch         25/136 
  Verifying        : fedora-repos-38-0.3.noarch                          26/136 
  Verifying        : fedora-repos-rawhide-38-0.3.noarch                  27/136 
  Verifying        : file-libs-5.42-4.fc37.x86_64                        28/136 
  Verifying        : filesystem-3.18-2.fc37.x86_64                       29/136 
  Verifying        : findutils-1:4.9.0-2.fc37.x86_64                     30/136 
  Verifying        : gawk-5.1.1-4.fc37.x86_64                            31/136 
  Verifying        : gdbm-libs-1:1.23-2.fc37.x86_64                      32/136 
  Verifying        : glib2-2.74.1-2.fc38.x86_64                          33/136 
  Verifying        : glibc-2.36.9000-11.fc38.x86_64                      34/136 
  Verifying        : glibc-common-2.36.9000-11.fc38.x86_64               35/136 
  Verifying        : glibc-minimal-langpack-2.36.9000-11.fc38.x86_64     36/136 
  Verifying        : gmp-1:6.2.1-3.fc37.x86_64                           37/136 
  Verifying        : gnupg2-2.3.8-1.fc38.x86_64                          38/136 
  Verifying        : gnutls-3.7.8-8.fc38.x86_64                          39/136 
  Verifying        : gpgme-1.17.0-4.fc37.x86_64                          40/136 
  Verifying        : grep-3.8-1.fc38.x86_64                              41/136 
  Verifying        : ima-evm-utils-1.4-6.fc37.x86_64                     42/136 
  Verifying        : json-c-0.16-3.fc38.x86_64                           43/136 
  Verifying        : keyutils-libs-1.6.1-5.fc37.x86_64                   44/136 
  Verifying        : krb5-libs-1.19.2-11.fc37.1.x86_64                   45/136 
  Verifying        : libacl-2.3.1-4.fc37.x86_64                          46/136 
  Verifying        : libarchive-3.6.1-2.fc37.x86_64                      47/136 
  Verifying        : libassuan-2.5.5-5.fc37.x86_64                       48/136 
  Verifying        : libattr-2.5.1-5.fc37.x86_64                         49/136 
  Verifying        : libb2-0.98.1-7.fc37.x86_64                          50/136 
  Verifying        : libblkid-2.38.1-2.fc38.x86_64                       51/136 
  Verifying        : libbrotli-1.0.9-9.fc37.x86_64                       52/136 
  Verifying        : libcap-2.48-5.fc37.x86_64                           53/136 
  Verifying        : libcap-ng-0.8.3-3.fc37.x86_64                       54/136 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     55/136 
  Verifying        : libcomps-0.1.18-4.fc37.x86_64                       56/136 
  Verifying        : libcurl-7.86.0-2.fc38.x86_64                        57/136 
  Verifying        : libdnf-0.68.0-1.fc38.x86_64                         58/136 
  Verifying        : libevent-2.1.12-7.fc37.x86_64                       59/136 
  Verifying        : libffi-3.4.2-9.fc37.x86_64                          60/136 
  Verifying        : libfsverity-1.4-8.fc37.x86_64                       61/136 
  Verifying        : libgcc-12.2.1-2.fc38.x86_64                         62/136 
  Verifying        : libgcrypt-1.10.1-4.fc37.x86_64                      63/136 
  Verifying        : libgomp-12.2.1-2.fc38.x86_64                        64/136 
  Verifying        : libgpg-error-1.46-1.fc38.x86_64                     65/136 
  Verifying        : libidn2-2.3.4-1.fc38.x86_64                         66/136 
  Verifying        : libksba-1.6.2-1.fc38.x86_64                         67/136 
  Verifying        : libmodulemd-2.14.0-4.fc37.x86_64                    68/136 
  Verifying        : libmount-2.38.1-2.fc38.x86_64                       69/136 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         70/136 
  Verifying        : libpsl-0.21.1-6.fc37.x86_64                         71/136 
  Verifying        : librepo-1.14.4-1.fc38.x86_64                        72/136 
  Verifying        : libreport-filesystem-2.17.5-2.fc38.noarch           73/136 
  Verifying        : libselinux-3.4-5.fc37.x86_64                        74/136 
  Verifying        : libsemanage-3.4-5.fc37.x86_64                       75/136 
  Verifying        : libsepol-3.4-3.fc37.x86_64                          76/136 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       77/136 
  Verifying        : libsmartcols-2.38.1-2.fc38.x86_64                   78/136 
  Verifying        : libsolv-0.7.22-3.fc37.x86_64                        79/136 
  Verifying        : libssh-0.10.4-2.fc38.x86_64                         80/136 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  81/136 
  Verifying        : libstdc++-12.2.1-2.fc38.x86_64                      82/136 
  Verifying        : libtasn1-4.18.0-3.fc37.x86_64                       83/136 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        84/136 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      85/136 
  Verifying        : libuuid-2.38.1-2.fc38.x86_64                        86/136 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        87/136 
  Verifying        : libxcrypt-4.4.30-1.fc38.x86_64                      88/136 
  Verifying        : libxml2-2.10.3-2.fc38.x86_64                        89/136 
  Verifying        : libyaml-0.2.5-8.fc37.x86_64                         90/136 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         91/136 
  Verifying        : lua-libs-5.4.4-6.fc38.x86_64                        92/136 
  Verifying        : lz4-libs-1.9.3-5.fc37.x86_64                        93/136 
  Verifying        : mpdecimal-2.5.1-4.fc37.x86_64                       94/136 
  Verifying        : mpfr-4.1.0-10.fc37.x86_64                           95/136 
  Verifying        : ncurses-base-6.3-3.20220501.fc37.noarch             96/136 
  Verifying        : ncurses-libs-6.3-3.20220501.fc37.x86_64             97/136 
  Verifying        : nettle-3.8-2.fc37.x86_64                            98/136 
  Verifying        : npth-1.6-10.fc38.x86_64                             99/136 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       100/136 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.x86_64                 101/136 
  Verifying        : p11-kit-0.24.1-3.fc37.x86_64                       102/136 
  Verifying        : p11-kit-trust-0.24.1-3.fc37.x86_64                 103/136 
  Verifying        : pcre2-10.40-1.fc37.1.x86_64                        104/136 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 105/136 
  Verifying        : popt-1.19-1.fc38.x86_64                            106/136 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     107/136 
  Verifying        : python-pip-wheel-22.2.2-2.fc38.noarch              108/136 
  Verifying        : python-setuptools-wheel-65.5.0-1.fc38.noarch       109/136 
  Verifying        : python3-3.11.0-1.fc38.x86_64                       110/136 
  Verifying        : python3-dbus-1.3.2-1.fc38.x86_64                   111/136 
  Verifying        : python3-distro-1.8.0-1.fc38.noarch                 112/136 
  Verifying        : python3-dnf-4.14.0-1.fc38.noarch                   113/136 
  Verifying        : python3-dnf-plugins-core-4.3.1-1.fc38.noarch       114/136 
  Verifying        : python3-gpg-1.17.0-4.fc37.x86_64                   115/136 
  Verifying        : python3-hawkey-0.68.0-1.fc38.x86_64                116/136 
  Verifying        : python3-libcomps-0.1.18-4.fc37.x86_64              117/136 
  Verifying        : python3-libdnf-0.68.0-1.fc38.x86_64                118/136 
  Verifying        : python3-libs-3.11.0-1.fc38.x86_64                  119/136 
  Verifying        : python3-rpm-4.18.0-3.fc38.x86_64                   120/136 
  Verifying        : python3-six-1.16.0-8.fc37.noarch                   121/136 
  Verifying        : readline-8.2-2.fc38.x86_64                         122/136 
  Verifying        : rpm-4.18.0-3.fc38.x86_64                           123/136 
  Verifying        : rpm-build-libs-4.18.0-3.fc38.x86_64                124/136 
  Verifying        : rpm-libs-4.18.0-3.fc38.x86_64                      125/136 
  Verifying        : rpm-sign-libs-4.18.0-3.fc38.x86_64                 126/136 
  Verifying        : sed-4.8-11.fc37.x86_64                             127/136 
  Verifying        : setup-2.14.2-1.fc38.noarch                         128/136 
  Verifying        : shadow-utils-2:4.12.3-3.fc38.x86_64                129/136 
  Verifying        : sqlite-libs-3.39.4-1.fc38.x86_64                   130/136 
  Verifying        : systemd-libs-252-587.fc38.x86_64                   131/136 
  Verifying        : tpm2-tss-3.2.0-3.fc37.x86_64                       132/136 
  Verifying        : tzdata-2022f-1.fc38.noarch                         133/136 
  Verifying        : xz-libs-5.2.7-1.fc38.x86_64                        134/136 
  Verifying        : zchunk-libs-1.2.3-1.fc38.x86_64                    135/136 
  Verifying        : zlib-1.2.12-5.fc38.x86_64                          136/136 
Installed products updated.

Installed:
  alternatives-1.21-1.fc38.x86_64                                               
  audit-libs-3.0.9-1.fc38.x86_64                                                
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.2-2.fc38.x86_64                                                      
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.x86_64                                                   
  coreutils-common-9.1-8.fc38.x86_64                                            
  crypto-policies-20221003-1.gitcb1ad32.fc38.noarch                             
  curl-7.86.0-2.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  dbus-libs-1:1.14.4-1.fc38.x86_64                                              
  dnf-4.14.0-1.fc38.noarch                                                      
  dnf-data-4.14.0-1.fc38.noarch                                                 
  dnf-plugins-core-4.3.1-1.fc38.noarch                                          
  elfutils-default-yama-scope-0.188-2.fc38.noarch                               
  elfutils-libelf-0.188-2.fc38.x86_64                                           
  elfutils-libs-0.188-2.fc38.x86_64                                             
  expat-2.4.8-2.fc37.x86_64                                                     
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.4.noarch                                                  
  fedora-release-common-38-0.4.noarch                                           
  fedora-release-identity-basic-38-0.4.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-libs-5.42-4.fc37.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  glib2-2.74.1-2.fc38.x86_64                                                    
  glibc-2.36.9000-11.fc38.x86_64                                                
  glibc-common-2.36.9000-11.fc38.x86_64                                         
  glibc-minimal-langpack-2.36.9000-11.fc38.x86_64                               
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnupg2-2.3.8-1.fc38.x86_64                                                    
  gnutls-3.7.8-8.fc38.x86_64                                                    
  gpgme-1.17.0-4.fc37.x86_64                                                    
  grep-3.8-1.fc38.x86_64                                                        
  ima-evm-utils-1.4-6.fc37.x86_64                                               
  json-c-0.16-3.fc38.x86_64                                                     
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.19.2-11.fc37.1.x86_64                                             
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-2.fc37.x86_64                                                
  libassuan-2.5.5-5.fc37.x86_64                                                 
  libattr-2.5.1-5.fc37.x86_64                                                   
  libb2-0.98.1-7.fc37.x86_64                                                    
  libblkid-2.38.1-2.fc38.x86_64                                                 
  libbrotli-1.0.9-9.fc37.x86_64                                                 
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-3.fc37.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcomps-0.1.18-4.fc37.x86_64                                                 
  libcurl-7.86.0-2.fc38.x86_64                                                  
  libdnf-0.68.0-1.fc38.x86_64                                                   
  libevent-2.1.12-7.fc37.x86_64                                                 
  libffi-3.4.2-9.fc37.x86_64                                                    
  libfsverity-1.4-8.fc37.x86_64                                                 
  libgcc-12.2.1-2.fc38.x86_64                                                   
  libgcrypt-1.10.1-4.fc37.x86_64                                                
  libgomp-12.2.1-2.fc38.x86_64                                                  
  libgpg-error-1.46-1.fc38.x86_64                                               
  libidn2-2.3.4-1.fc38.x86_64                                                   
  libksba-1.6.2-1.fc38.x86_64                                                   
  libmodulemd-2.14.0-4.fc37.x86_64                                              
  libmount-2.38.1-2.fc38.x86_64                                                 
  libnghttp2-1.50.0-1.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpsl-0.21.1-6.fc37.x86_64                                                   
  librepo-1.14.4-1.fc38.x86_64                                                  
  libreport-filesystem-2.17.5-2.fc38.noarch                                     
  libselinux-3.4-5.fc37.x86_64                                                  
  libsemanage-3.4-5.fc37.x86_64                                                 
  libsepol-3.4-3.fc37.x86_64                                                    
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-2.fc38.x86_64                                             
  libsolv-0.7.22-3.fc37.x86_64                                                  
  libssh-0.10.4-2.fc38.x86_64                                                   
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-12.2.1-2.fc38.x86_64                                                
  libtasn1-4.18.0-3.fc37.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libuuid-2.38.1-2.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.30-1.fc38.x86_64                                                
  libxml2-2.10.3-2.fc38.x86_64                                                  
  libyaml-0.2.5-8.fc37.x86_64                                                   
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-6.fc38.x86_64                                                  
  lz4-libs-1.9.3-5.fc37.x86_64                                                  
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  mpfr-4.1.0-10.fc37.x86_64                                                     
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.x86_64                                       
  nettle-3.8-2.fc37.x86_64                                                      
  npth-1.6-10.fc38.x86_64                                                       
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.5-6.fc38.x86_64                                            
  p11-kit-0.24.1-3.fc37.x86_64                                                  
  p11-kit-trust-0.24.1-3.fc37.x86_64                                            
  pcre2-10.40-1.fc37.1.x86_64                                                   
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  popt-1.19-1.fc38.x86_64                                                       
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-pip-wheel-22.2.2-2.fc38.noarch                                         
  python-setuptools-wheel-65.5.0-1.fc38.noarch                                  
  python3-3.11.0-1.fc38.x86_64                                                  
  python3-dateutil-1:2.8.2-4.fc38.noarch                                        
  python3-dbus-1.3.2-1.fc38.x86_64                                              
  python3-distro-1.8.0-1.fc38.noarch                                            
  python3-dnf-4.14.0-1.fc38.noarch                                              
  python3-dnf-plugins-core-4.3.1-1.fc38.noarch                                  
  python3-gpg-1.17.0-4.fc37.x86_64                                              
  python3-hawkey-0.68.0-1.fc38.x86_64                                           
  python3-libcomps-0.1.18-4.fc37.x86_64                                         
  python3-libdnf-0.68.0-1.fc38.x86_64                                           
  python3-libs-3.11.0-1.fc38.x86_64                                             
  python3-rpm-4.18.0-3.fc38.x86_64                                              
  python3-six-1.16.0-8.fc37.noarch                                              
  readline-8.2-2.fc38.x86_64                                                    
  rpm-4.18.0-3.fc38.x86_64                                                      
  rpm-build-libs-4.18.0-3.fc38.x86_64                                           
  rpm-libs-4.18.0-3.fc38.x86_64                                                 
  rpm-sign-libs-4.18.0-3.fc38.x86_64                                            
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.2-1.fc38.noarch                                                    
  shadow-utils-2:4.12.3-3.fc38.x86_64                                           
  sqlite-libs-3.39.4-1.fc38.x86_64                                              
  systemd-libs-252-587.fc38.x86_64                                              
  tpm2-tss-3.2.0-3.fc37.x86_64                                                  
  tzdata-2022f-1.fc38.noarch                                                    
  xz-libs-5.2.7-1.fc38.x86_64                                                   
  zchunk-libs-1.2.3-1.fc38.x86_64                                               
  zlib-1.2.12-5.fc38.x86_64                                                     

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.3
INFO: Mock Version: 3.3
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  54 kB/s | 3.0 kB     00:00    
Copr repository                                  27 MB/s | 7.1 MB     00:00    
fedora                                          197 kB/s | 9.1 kB     00:00    
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         x86_64 5.2.2-2.fc38               fedora    1.8 M
 bzip2                        x86_64 1.0.8-12.fc37              fedora     52 k
 coreutils                    x86_64 9.1-8.fc38                 fedora    1.1 M
 cpio                         x86_64 2.13-13.fc38               fedora    276 k
 diffutils                    x86_64 3.8-3.fc37                 fedora    378 k
 fedora-release-common        noarch 38-0.4                     fedora     22 k
 findutils                    x86_64 1:4.9.0-2.fc37             fedora    492 k
 gawk                         x86_64 5.1.1-4.fc37               fedora    1.0 M
 glibc-minimal-langpack       x86_64 2.36.9000-11.fc38          fedora     22 k
 grep                         x86_64 3.8-1.fc38                 fedora    292 k
 gzip                         x86_64 1.12-2.fc37                fedora    166 k
 info                         x86_64 6.8-4.fc37                 fedora    225 k
 patch                        x86_64 2.7.6-17.fc37              fedora    124 k
 redhat-rpm-config            noarch 232-1.fc38                 fedora     81 k
 rpm-build                    x86_64 4.18.0-3.fc38              fedora     77 k
 sed                          x86_64 4.8-11.fc37                fedora    306 k
 shadow-utils                 x86_64 2:4.12.3-3.fc38            fedora    1.3 M
 tar                          x86_64 2:1.34-5.fc38              fedora    885 k
 unzip                        x86_64 6.0-58.fc37                fedora    182 k
 util-linux                   x86_64 2.38.1-2.fc38              fedora    2.3 M
 which                        x86_64 2.21-35.fc37               fedora     41 k
 xz                           x86_64 5.2.7-1.fc38               fedora    304 k
Installing dependencies:
 alternatives                 x86_64 1.21-1.fc38                fedora     38 k
 ansible-srpm-macros          noarch 1-8.1.fc38                 fedora    8.6 k
 audit-libs                   x86_64 3.0.9-1.fc38               fedora    116 k
 authselect                   x86_64 1.4.0-3.fc37               fedora    144 k
 authselect-libs              x86_64 1.4.0-3.fc37               fedora    248 k
 basesystem                   noarch 11-14.fc37                 fedora    7.0 k
 binutils                     x86_64 2.39-3.fc38                fedora    5.4 M
 binutils-gold                x86_64 2.39-3.fc38                fedora    778 k
 bzip2-libs                   x86_64 1.0.8-12.fc37              fedora     41 k
 ca-certificates              noarch 2022.2.54-5.fc37           fedora    829 k
 coreutils-common             x86_64 9.1-8.fc38                 fedora    2.0 M
 cracklib                     x86_64 2.9.7-30.fc38              fedora     92 k
 crypto-policies              noarch 20221003-1.gitcb1ad32.fc38 fedora     86 k
 curl                         x86_64 7.86.0-2.fc38              fedora    334 k
 cyrus-sasl-lib               x86_64 2.1.28-8.fc38              fedora    792 k
 debugedit                    x86_64 5.0-5.fc37                 fedora     77 k
 dwz                          x86_64 0.15-1.fc38                fedora    136 k
 ed                           x86_64 1.18-2.fc37                fedora     78 k
 efi-srpm-macros              noarch 5-6.fc37                   fedora     22 k
 elfutils                     x86_64 0.188-2.fc38               fedora    529 k
 elfutils-debuginfod-client   x86_64 0.188-2.fc38               fedora     39 k
 elfutils-default-yama-scope  noarch 0.188-2.fc38               fedora     15 k
 elfutils-libelf              x86_64 0.188-2.fc38               fedora    196 k
 elfutils-libs                x86_64 0.188-2.fc38               fedora    257 k
 fedora-gpg-keys              noarch 38-0.3                     fedora    125 k
 fedora-release               noarch 38-0.4                     fedora     11 k
 fedora-release-identity-basic
                              noarch 38-0.4                     fedora     12 k
 fedora-repos                 noarch 38-0.3                     fedora     10 k
 fedora-repos-rawhide         noarch 38-0.3                     fedora    9.7 k
 file                         x86_64 5.42-4.fc37                fedora     49 k
 file-libs                    x86_64 5.42-4.fc37                fedora    676 k
 filesystem                   x86_64 3.18-2.fc37                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-9.fc38             fedora     26 k
 fpc-srpm-macros              noarch 1.3-6.fc37                 fedora    7.7 k
 gdb-minimal                  x86_64 12.1-9.fc38                fedora    3.7 M
 gdbm-libs                    x86_64 1:1.23-2.fc37              fedora     56 k
 ghc-srpm-macros              noarch 1.5.0-7.fc37               fedora    7.8 k
 glibc                        x86_64 2.36.9000-11.fc38          fedora    2.1 M
 glibc-common                 x86_64 2.36.9000-11.fc38          fedora    301 k
 glibc-gconv-extra            x86_64 2.36.9000-11.fc38          fedora    1.6 M
 gmp                          x86_64 1:6.2.1-3.fc37             fedora    315 k
 gnat-srpm-macros             noarch 4-16.fc37                  fedora    8.3 k
 go-srpm-macros               noarch 3.2.0-1.fc38               fedora     27 k
 jansson                      x86_64 2.13.1-5.fc37              fedora     44 k
 kernel-srpm-macros           noarch 1.0-15.fc37                fedora    9.4 k
 keyutils-libs                x86_64 1.6.1-5.fc37               fedora     31 k
 krb5-libs                    x86_64 1.19.2-11.fc37.1           fedora    727 k
 libacl                       x86_64 2.3.1-4.fc37               fedora     23 k
 libarchive                   x86_64 3.6.1-2.fc37               fedora    397 k
 libattr                      x86_64 2.5.1-5.fc37               fedora     18 k
 libblkid                     x86_64 2.38.1-2.fc38              fedora    107 k
 libbrotli                    x86_64 1.0.9-9.fc37               fedora    315 k
 libcap                       x86_64 2.48-5.fc37                fedora     67 k
 libcap-ng                    x86_64 0.8.3-3.fc37               fedora     33 k
 libcom_err                   x86_64 1.46.5-3.fc37              fedora     25 k
 libcurl                      x86_64 7.86.0-2.fc38              fedora    305 k
 libdb                        x86_64 5.3.28-53.fc37             fedora    760 k
 libeconf                     x86_64 0.4.0-4.fc37               fedora     27 k
 libevent                     x86_64 2.1.12-7.fc37              fedora    261 k
 libfdisk                     x86_64 2.38.1-2.fc38              fedora    160 k
 libffi                       x86_64 3.4.2-9.fc37               fedora     37 k
 libgcc                       x86_64 12.2.1-2.fc38              fedora    106 k
 libgomp                      x86_64 12.2.1-2.fc38              fedora    293 k
 libidn2                      x86_64 2.3.4-1.fc38               fedora    160 k
 libmount                     x86_64 2.38.1-2.fc38              fedora    135 k
 libnghttp2                   x86_64 1.50.0-1.fc38              copr_base  75 k
 libnsl2                      x86_64 2.0.0-4.fc37               fedora     30 k
 libpkgconf                   x86_64 1.8.0-3.fc37               fedora     36 k
 libpsl                       x86_64 0.21.1-6.fc37              fedora     63 k
 libpwquality                 x86_64 1.4.4-11.fc37              fedora    116 k
 libselinux                   x86_64 3.4-5.fc37                 fedora     86 k
 libsemanage                  x86_64 3.4-5.fc37                 fedora    120 k
 libsepol                     x86_64 3.4-3.fc37                 fedora    322 k
 libsigsegv                   x86_64 2.14-3.fc37                fedora     27 k
 libsmartcols                 x86_64 2.38.1-2.fc38              fedora     64 k
 libssh                       x86_64 0.10.4-2.fc38              fedora    209 k
 libssh-config                noarch 0.10.4-2.fc38              fedora    8.8 k
 libstdc++                    x86_64 12.2.1-2.fc38              fedora    800 k
 libtasn1                     x86_64 4.18.0-3.fc37              fedora     75 k
 libtirpc                     x86_64 1.3.3-0.fc37               fedora     93 k
 libunistring                 x86_64 1.0-2.fc37                 fedora    549 k
 libutempter                  x86_64 1.2.1-7.fc37               fedora     26 k
 libuuid                      x86_64 2.38.1-2.fc38              fedora     28 k
 libverto                     x86_64 0.3.2-4.fc37               fedora     21 k
 libxcrypt                    x86_64 4.4.30-1.fc38              fedora    118 k
 libxml2                      x86_64 2.10.3-2.fc38              fedora    705 k
 libzstd                      x86_64 1.5.2-3.fc37               fedora    294 k
 lua-libs                     x86_64 5.4.4-6.fc38               fedora    131 k
 lua-srpm-macros              noarch 1-7.fc37                   fedora    8.8 k
 lz4-libs                     x86_64 1.9.3-5.fc37               fedora     70 k
 mpfr                         x86_64 4.1.0-10.fc37              fedora    331 k
 ncurses-base                 noarch 6.3-3.20220501.fc37        fedora     86 k
 ncurses-libs                 x86_64 6.3-3.20220501.fc37        fedora    329 k
 nim-srpm-macros              noarch 3-7.fc37                   fedora    8.4 k
 ocaml-srpm-macros            noarch 7-2.fc37                   fedora     13 k
 openblas-srpm-macros         noarch 2-12.fc37                  fedora    7.5 k
 openldap                     x86_64 2.6.3-1.fc38               fedora    254 k
 openssl-libs                 x86_64 1:3.0.5-6.fc38             fedora    2.1 M
 p11-kit                      x86_64 0.24.1-3.fc37              fedora    376 k
 p11-kit-trust                x86_64 0.24.1-3.fc37              fedora    138 k
 package-notes-srpm-macros    noarch 0.5-6.fc38                 fedora     11 k
 pam                          x86_64 1.5.2-14.fc37              fedora    560 k
 pam-libs                     x86_64 1.5.2-14.fc37              fedora     58 k
 pcre2                        x86_64 10.40-1.fc37.1             fedora    236 k
 pcre2-syntax                 noarch 10.40-1.fc37.1             fedora    142 k
 perl-srpm-macros             noarch 1-46.fc37                  fedora    8.3 k
 pkgconf                      x86_64 1.8.0-3.fc37               fedora     41 k
 pkgconf-m4                   noarch 1.8.0-3.fc37               fedora     14 k
 pkgconf-pkg-config           x86_64 1.8.0-3.fc37               fedora     10 k
 popt                         x86_64 1.19-1.fc38                fedora     66 k
 publicsuffix-list-dafsa      noarch 20210518-5.fc37            fedora     58 k
 python-srpm-macros           noarch 3.11-5.fc38                fedora     24 k
 qt5-srpm-macros              noarch 5.15.7-1.fc38              fedora    7.9 k
 readline                     x86_64 8.2-2.fc38                 fedora    211 k
 rpm                          x86_64 4.18.0-3.fc38              fedora    570 k
 rpm-build-libs               x86_64 4.18.0-3.fc38              fedora     94 k
 rpm-libs                     x86_64 4.18.0-3.fc38              fedora    320 k
 rpmautospec-rpm-macros       noarch 0.3.0-1.fc37               fedora    8.8 k
 rust-srpm-macros             noarch 23-1.fc38                  fedora    9.4 k
 setup                        noarch 2.14.2-1.fc38              fedora    151 k
 sqlite-libs                  x86_64 3.39.4-1.fc38              fedora    658 k
 systemd-libs                 x86_64 252-587.fc38               fedora    631 k
 tzdata                       noarch 2022f-1.fc38               fedora    715 k
 util-linux-core              x86_64 2.38.1-2.fc38              fedora    470 k
 xxhash-libs                  x86_64 0.8.1-3.fc37               fedora     41 k
 xz-libs                      x86_64 5.2.7-1.fc38               fedora     93 k
 zip                          x86_64 3.0-33.fc37                fedora    259 k
 zlib                         x86_64 1.2.12-5.fc38              fedora     94 k
 zstd                         x86_64 1.5.2-3.fc37               fedora    447 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  151 Packages

Total size: 51 M
Installed size: 176 M
Downloading Packages:
[SKIPPED] libnghttp2-1.50.0-1.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] alternatives-1.21-1.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded        
[SKIPPED] audit-libs-3.0.9-1.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded          
[SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded                 
[SKIPPED] bash-5.2.2-2.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] binutils-2.39-3.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] binutils-gold-2.39-3.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded      
[SKIPPED] coreutils-9.1-8.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] coreutils-common-9.1-8.fc38.x86_64.rpm: Already downloaded           
[SKIPPED] cpio-2.13-13.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] crypto-policies-20221003-1.gitcb1ad32.fc38.noarch.rpm: Already downloaded
[SKIPPED] curl-7.86.0-2.fc38.x86_64.rpm: Already downloaded                    
[SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] debugedit-5.0-5.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] dwz-0.15-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded                        
[SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded              
[SKIPPED] elfutils-0.188-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] elfutils-debuginfod-client-0.188-2.fc38.x86_64.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.188-2.fc38.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.188-2.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] elfutils-libs-0.188-2.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-38-0.4.noarch.rpm: Already downloaded                 
[SKIPPED] fedora-release-common-38-0.4.noarch.rpm: Already downloaded          
[SKIPPED] fedora-release-identity-basic-38-0.4.noarch.rpm: Already downloaded  
[SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded                   
[SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded           
[SKIPPED] file-5.42-4.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] file-libs-5.42-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] fonts-srpm-macros-2.0.5-9.fc38.noarch.rpm: Already downloaded        
[SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded            
[SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] gdb-minimal-12.1-9.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded          
[SKIPPED] glibc-2.36.9000-11.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] glibc-common-2.36.9000-11.fc38.x86_64.rpm: Already downloaded        
[SKIPPED] glibc-gconv-extra-2.36.9000-11.fc38.x86_64.rpm: Already downloaded   
[SKIPPED] glibc-minimal-langpack-2.36.9000-11.fc38.x86_64.rpm: Already downloaded
[SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded            
[SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded           
[SKIPPED] grep-3.8-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded                      
[SKIPPED] info-6.8-4.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] jansson-2.13.1-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded        
[SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded            
[SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded            
[SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libblkid-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libbrotli-1.0.9-9.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] libcurl-7.86.0-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libeconf-0.4.0-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libevent-2.1.12-7.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libfdisk-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libffi-3.4.2-9.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libgcc-12.2.1-2.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] libgomp-12.2.1-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libidn2-2.3.4-1.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] libmount-2.38.1-2.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libpsl-0.21.1-6.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] libpwquality-1.4.4-11.fc37.x86_64.rpm: Already downloaded            
[SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libsepol-3.4-3.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libsigsegv-2.14-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libsmartcols-2.38.1-2.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] libssh-0.10.4-2.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded           
[SKIPPED] libstdc++-12.2.1-2.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] libtirpc-1.3.3-0.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libunistring-1.0-2.fc37.x86_64.rpm: Already downloaded               
[SKIPPED] libutempter-1.2.1-7.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] libuuid-2.38.1-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] libxcrypt-4.4.30-1.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] libxml2-2.10.3-2.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] lua-libs-5.4.4-6.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] lz4-libs-1.9.3-5.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] mpfr-4.1.0-10.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] ncurses-base-6.3-3.20220501.fc37.noarch.rpm: Already downloaded      
[SKIPPED] ncurses-libs-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded      
[SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded              
[SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded            
[SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded        
[SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] openssl-libs-3.0.5-6.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded                 
[SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded           
[SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded  
[SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] patch-2.7.6-17.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded                  
[SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded           
[SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded            
[SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded               
[SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded       
[SKIPPED] popt-1.19-1.fc38.x86_64.rpm: Already downloaded                      
[SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded
[SKIPPED] python-srpm-macros-3.11-5.fc38.noarch.rpm: Already downloaded        
[SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded         
[SKIPPED] readline-8.2-2.fc38.x86_64.rpm: Already downloaded                   
[SKIPPED] redhat-rpm-config-232-1.fc38.noarch.rpm: Already downloaded          
[SKIPPED] rpm-4.18.0-3.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] rpm-build-4.18.0-3.fc38.x86_64.rpm: Already downloaded               
[SKIPPED] rpm-build-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded          
[SKIPPED] rpm-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded   
[SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded            
[SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] setup-2.14.2-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] shadow-utils-4.12.3-3.fc38.x86_64.rpm: Already downloaded            
[SKIPPED] sqlite-libs-3.39.4-1.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] systemd-libs-252-587.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] tar-1.34-5.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] tzdata-2022f-1.fc38.noarch.rpm: Already downloaded                   
[SKIPPED] unzip-6.0-58.fc37.x86_64.rpm: Already downloaded                     
[SKIPPED] util-linux-2.38.1-2.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] util-linux-core-2.38.1-2.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] which-2.21-35.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] xxhash-libs-0.8.1-3.fc37.x86_64.rpm: Already downloaded              
[SKIPPED] xz-5.2.7-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] xz-libs-5.2.7-1.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded                       
[SKIPPED] zlib-1.2.12-5.fc38.x86_64.rpm: Already downloaded                    
[SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded                     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xEB10B464:
 Userid     : "Fedora (38) <fedora-38-primary@fedoraproject.org>"
 Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x5323552A:
 Userid     : "Fedora (37) <fedora-37-primary@fedoraproject.org>"
 Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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warning: /etc/hosts created as /etc/hosts.rpmnew

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  Verifying        : libcap-ng-0.8.3-3.fc37.x86_64                       67/151 
  Verifying        : libcom_err-1.46.5-3.fc37.x86_64                     68/151 
  Verifying        : libcurl-7.86.0-2.fc38.x86_64                        69/151 
  Verifying        : libdb-5.3.28-53.fc37.x86_64                         70/151 
  Verifying        : libeconf-0.4.0-4.fc37.x86_64                        71/151 
  Verifying        : libevent-2.1.12-7.fc37.x86_64                       72/151 
  Verifying        : libfdisk-2.38.1-2.fc38.x86_64                       73/151 
  Verifying        : libffi-3.4.2-9.fc37.x86_64                          74/151 
  Verifying        : libgcc-12.2.1-2.fc38.x86_64                         75/151 
  Verifying        : libgomp-12.2.1-2.fc38.x86_64                        76/151 
  Verifying        : libidn2-2.3.4-1.fc38.x86_64                         77/151 
  Verifying        : libmount-2.38.1-2.fc38.x86_64                       78/151 
  Verifying        : libnsl2-2.0.0-4.fc37.x86_64                         79/151 
  Verifying        : libpkgconf-1.8.0-3.fc37.x86_64                      80/151 
  Verifying        : libpsl-0.21.1-6.fc37.x86_64                         81/151 
  Verifying        : libpwquality-1.4.4-11.fc37.x86_64                   82/151 
  Verifying        : libselinux-3.4-5.fc37.x86_64                        83/151 
  Verifying        : libsemanage-3.4-5.fc37.x86_64                       84/151 
  Verifying        : libsepol-3.4-3.fc37.x86_64                          85/151 
  Verifying        : libsigsegv-2.14-3.fc37.x86_64                       86/151 
  Verifying        : libsmartcols-2.38.1-2.fc38.x86_64                   87/151 
  Verifying        : libssh-0.10.4-2.fc38.x86_64                         88/151 
  Verifying        : libssh-config-0.10.4-2.fc38.noarch                  89/151 
  Verifying        : libstdc++-12.2.1-2.fc38.x86_64                      90/151 
  Verifying        : libtasn1-4.18.0-3.fc37.x86_64                       91/151 
  Verifying        : libtirpc-1.3.3-0.fc37.x86_64                        92/151 
  Verifying        : libunistring-1.0-2.fc37.x86_64                      93/151 
  Verifying        : libutempter-1.2.1-7.fc37.x86_64                     94/151 
  Verifying        : libuuid-2.38.1-2.fc38.x86_64                        95/151 
  Verifying        : libverto-0.3.2-4.fc37.x86_64                        96/151 
  Verifying        : libxcrypt-4.4.30-1.fc38.x86_64                      97/151 
  Verifying        : libxml2-2.10.3-2.fc38.x86_64                        98/151 
  Verifying        : libzstd-1.5.2-3.fc37.x86_64                         99/151 
  Verifying        : lua-libs-5.4.4-6.fc38.x86_64                       100/151 
  Verifying        : lua-srpm-macros-1-7.fc37.noarch                    101/151 
  Verifying        : lz4-libs-1.9.3-5.fc37.x86_64                       102/151 
  Verifying        : mpfr-4.1.0-10.fc37.x86_64                          103/151 
  Verifying        : ncurses-base-6.3-3.20220501.fc37.noarch            104/151 
  Verifying        : ncurses-libs-6.3-3.20220501.fc37.x86_64            105/151 
  Verifying        : nim-srpm-macros-3-7.fc37.noarch                    106/151 
  Verifying        : ocaml-srpm-macros-7-2.fc37.noarch                  107/151 
  Verifying        : openblas-srpm-macros-2-12.fc37.noarch              108/151 
  Verifying        : openldap-2.6.3-1.fc38.x86_64                       109/151 
  Verifying        : openssl-libs-1:3.0.5-6.fc38.x86_64                 110/151 
  Verifying        : p11-kit-0.24.1-3.fc37.x86_64                       111/151 
  Verifying        : p11-kit-trust-0.24.1-3.fc37.x86_64                 112/151 
  Verifying        : package-notes-srpm-macros-0.5-6.fc38.noarch        113/151 
  Verifying        : pam-1.5.2-14.fc37.x86_64                           114/151 
  Verifying        : pam-libs-1.5.2-14.fc37.x86_64                      115/151 
  Verifying        : patch-2.7.6-17.fc37.x86_64                         116/151 
  Verifying        : pcre2-10.40-1.fc37.1.x86_64                        117/151 
  Verifying        : pcre2-syntax-10.40-1.fc37.1.noarch                 118/151 
  Verifying        : perl-srpm-macros-1-46.fc37.noarch                  119/151 
  Verifying        : pkgconf-1.8.0-3.fc37.x86_64                        120/151 
  Verifying        : pkgconf-m4-1.8.0-3.fc37.noarch                     121/151 
  Verifying        : pkgconf-pkg-config-1.8.0-3.fc37.x86_64             122/151 
  Verifying        : popt-1.19-1.fc38.x86_64                            123/151 
  Verifying        : publicsuffix-list-dafsa-20210518-5.fc37.noarch     124/151 
  Verifying        : python-srpm-macros-3.11-5.fc38.noarch              125/151 
  Verifying        : qt5-srpm-macros-5.15.7-1.fc38.noarch               126/151 
  Verifying        : readline-8.2-2.fc38.x86_64                         127/151 
  Verifying        : redhat-rpm-config-232-1.fc38.noarch                128/151 
  Verifying        : rpm-4.18.0-3.fc38.x86_64                           129/151 
  Verifying        : rpm-build-4.18.0-3.fc38.x86_64                     130/151 
  Verifying        : rpm-build-libs-4.18.0-3.fc38.x86_64                131/151 
  Verifying        : rpm-libs-4.18.0-3.fc38.x86_64                      132/151 
  Verifying        : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch         133/151 
  Verifying        : rust-srpm-macros-23-1.fc38.noarch                  134/151 
  Verifying        : sed-4.8-11.fc37.x86_64                             135/151 
  Verifying        : setup-2.14.2-1.fc38.noarch                         136/151 
  Verifying        : shadow-utils-2:4.12.3-3.fc38.x86_64                137/151 
  Verifying        : sqlite-libs-3.39.4-1.fc38.x86_64                   138/151 
  Verifying        : systemd-libs-252-587.fc38.x86_64                   139/151 
  Verifying        : tar-2:1.34-5.fc38.x86_64                           140/151 
  Verifying        : tzdata-2022f-1.fc38.noarch                         141/151 
  Verifying        : unzip-6.0-58.fc37.x86_64                           142/151 
  Verifying        : util-linux-2.38.1-2.fc38.x86_64                    143/151 
  Verifying        : util-linux-core-2.38.1-2.fc38.x86_64               144/151 
  Verifying        : which-2.21-35.fc37.x86_64                          145/151 
  Verifying        : xxhash-libs-0.8.1-3.fc37.x86_64                    146/151 
  Verifying        : xz-5.2.7-1.fc38.x86_64                             147/151 
  Verifying        : xz-libs-5.2.7-1.fc38.x86_64                        148/151 
  Verifying        : zip-3.0-33.fc37.x86_64                             149/151 
  Verifying        : zlib-1.2.12-5.fc38.x86_64                          150/151 
  Verifying        : zstd-1.5.2-3.fc37.x86_64                           151/151 

Installed:
  alternatives-1.21-1.fc38.x86_64                                               
  ansible-srpm-macros-1-8.1.fc38.noarch                                         
  audit-libs-3.0.9-1.fc38.x86_64                                                
  authselect-1.4.0-3.fc37.x86_64                                                
  authselect-libs-1.4.0-3.fc37.x86_64                                           
  basesystem-11-14.fc37.noarch                                                  
  bash-5.2.2-2.fc38.x86_64                                                      
  binutils-2.39-3.fc38.x86_64                                                   
  binutils-gold-2.39-3.fc38.x86_64                                              
  bzip2-1.0.8-12.fc37.x86_64                                                    
  bzip2-libs-1.0.8-12.fc37.x86_64                                               
  ca-certificates-2022.2.54-5.fc37.noarch                                       
  coreutils-9.1-8.fc38.x86_64                                                   
  coreutils-common-9.1-8.fc38.x86_64                                            
  cpio-2.13-13.fc38.x86_64                                                      
  cracklib-2.9.7-30.fc38.x86_64                                                 
  crypto-policies-20221003-1.gitcb1ad32.fc38.noarch                             
  curl-7.86.0-2.fc38.x86_64                                                     
  cyrus-sasl-lib-2.1.28-8.fc38.x86_64                                           
  debugedit-5.0-5.fc37.x86_64                                                   
  diffutils-3.8-3.fc37.x86_64                                                   
  dwz-0.15-1.fc38.x86_64                                                        
  ed-1.18-2.fc37.x86_64                                                         
  efi-srpm-macros-5-6.fc37.noarch                                               
  elfutils-0.188-2.fc38.x86_64                                                  
  elfutils-debuginfod-client-0.188-2.fc38.x86_64                                
  elfutils-default-yama-scope-0.188-2.fc38.noarch                               
  elfutils-libelf-0.188-2.fc38.x86_64                                           
  elfutils-libs-0.188-2.fc38.x86_64                                             
  fedora-gpg-keys-38-0.3.noarch                                                 
  fedora-release-38-0.4.noarch                                                  
  fedora-release-common-38-0.4.noarch                                           
  fedora-release-identity-basic-38-0.4.noarch                                   
  fedora-repos-38-0.3.noarch                                                    
  fedora-repos-rawhide-38-0.3.noarch                                            
  file-5.42-4.fc37.x86_64                                                       
  file-libs-5.42-4.fc37.x86_64                                                  
  filesystem-3.18-2.fc37.x86_64                                                 
  findutils-1:4.9.0-2.fc37.x86_64                                               
  fonts-srpm-macros-1:2.0.5-9.fc38.noarch                                       
  fpc-srpm-macros-1.3-6.fc37.noarch                                             
  gawk-5.1.1-4.fc37.x86_64                                                      
  gdb-minimal-12.1-9.fc38.x86_64                                                
  gdbm-libs-1:1.23-2.fc37.x86_64                                                
  ghc-srpm-macros-1.5.0-7.fc37.noarch                                           
  glibc-2.36.9000-11.fc38.x86_64                                                
  glibc-common-2.36.9000-11.fc38.x86_64                                         
  glibc-gconv-extra-2.36.9000-11.fc38.x86_64                                    
  glibc-minimal-langpack-2.36.9000-11.fc38.x86_64                               
  gmp-1:6.2.1-3.fc37.x86_64                                                     
  gnat-srpm-macros-4-16.fc37.noarch                                             
  go-srpm-macros-3.2.0-1.fc38.noarch                                            
  grep-3.8-1.fc38.x86_64                                                        
  gzip-1.12-2.fc37.x86_64                                                       
  info-6.8-4.fc37.x86_64                                                        
  jansson-2.13.1-5.fc37.x86_64                                                  
  kernel-srpm-macros-1.0-15.fc37.noarch                                         
  keyutils-libs-1.6.1-5.fc37.x86_64                                             
  krb5-libs-1.19.2-11.fc37.1.x86_64                                             
  libacl-2.3.1-4.fc37.x86_64                                                    
  libarchive-3.6.1-2.fc37.x86_64                                                
  libattr-2.5.1-5.fc37.x86_64                                                   
  libblkid-2.38.1-2.fc38.x86_64                                                 
  libbrotli-1.0.9-9.fc37.x86_64                                                 
  libcap-2.48-5.fc37.x86_64                                                     
  libcap-ng-0.8.3-3.fc37.x86_64                                                 
  libcom_err-1.46.5-3.fc37.x86_64                                               
  libcurl-7.86.0-2.fc38.x86_64                                                  
  libdb-5.3.28-53.fc37.x86_64                                                   
  libeconf-0.4.0-4.fc37.x86_64                                                  
  libevent-2.1.12-7.fc37.x86_64                                                 
  libfdisk-2.38.1-2.fc38.x86_64                                                 
  libffi-3.4.2-9.fc37.x86_64                                                    
  libgcc-12.2.1-2.fc38.x86_64                                                   
  libgomp-12.2.1-2.fc38.x86_64                                                  
  libidn2-2.3.4-1.fc38.x86_64                                                   
  libmount-2.38.1-2.fc38.x86_64                                                 
  libnghttp2-1.50.0-1.fc38.x86_64                                               
  libnsl2-2.0.0-4.fc37.x86_64                                                   
  libpkgconf-1.8.0-3.fc37.x86_64                                                
  libpsl-0.21.1-6.fc37.x86_64                                                   
  libpwquality-1.4.4-11.fc37.x86_64                                             
  libselinux-3.4-5.fc37.x86_64                                                  
  libsemanage-3.4-5.fc37.x86_64                                                 
  libsepol-3.4-3.fc37.x86_64                                                    
  libsigsegv-2.14-3.fc37.x86_64                                                 
  libsmartcols-2.38.1-2.fc38.x86_64                                             
  libssh-0.10.4-2.fc38.x86_64                                                   
  libssh-config-0.10.4-2.fc38.noarch                                            
  libstdc++-12.2.1-2.fc38.x86_64                                                
  libtasn1-4.18.0-3.fc37.x86_64                                                 
  libtirpc-1.3.3-0.fc37.x86_64                                                  
  libunistring-1.0-2.fc37.x86_64                                                
  libutempter-1.2.1-7.fc37.x86_64                                               
  libuuid-2.38.1-2.fc38.x86_64                                                  
  libverto-0.3.2-4.fc37.x86_64                                                  
  libxcrypt-4.4.30-1.fc38.x86_64                                                
  libxml2-2.10.3-2.fc38.x86_64                                                  
  libzstd-1.5.2-3.fc37.x86_64                                                   
  lua-libs-5.4.4-6.fc38.x86_64                                                  
  lua-srpm-macros-1-7.fc37.noarch                                               
  lz4-libs-1.9.3-5.fc37.x86_64                                                  
  mpfr-4.1.0-10.fc37.x86_64                                                     
  ncurses-base-6.3-3.20220501.fc37.noarch                                       
  ncurses-libs-6.3-3.20220501.fc37.x86_64                                       
  nim-srpm-macros-3-7.fc37.noarch                                               
  ocaml-srpm-macros-7-2.fc37.noarch                                             
  openblas-srpm-macros-2-12.fc37.noarch                                         
  openldap-2.6.3-1.fc38.x86_64                                                  
  openssl-libs-1:3.0.5-6.fc38.x86_64                                            
  p11-kit-0.24.1-3.fc37.x86_64                                                  
  p11-kit-trust-0.24.1-3.fc37.x86_64                                            
  package-notes-srpm-macros-0.5-6.fc38.noarch                                   
  pam-1.5.2-14.fc37.x86_64                                                      
  pam-libs-1.5.2-14.fc37.x86_64                                                 
  patch-2.7.6-17.fc37.x86_64                                                    
  pcre2-10.40-1.fc37.1.x86_64                                                   
  pcre2-syntax-10.40-1.fc37.1.noarch                                            
  perl-srpm-macros-1-46.fc37.noarch                                             
  pkgconf-1.8.0-3.fc37.x86_64                                                   
  pkgconf-m4-1.8.0-3.fc37.noarch                                                
  pkgconf-pkg-config-1.8.0-3.fc37.x86_64                                        
  popt-1.19-1.fc38.x86_64                                                       
  publicsuffix-list-dafsa-20210518-5.fc37.noarch                                
  python-srpm-macros-3.11-5.fc38.noarch                                         
  qt5-srpm-macros-5.15.7-1.fc38.noarch                                          
  readline-8.2-2.fc38.x86_64                                                    
  redhat-rpm-config-232-1.fc38.noarch                                           
  rpm-4.18.0-3.fc38.x86_64                                                      
  rpm-build-4.18.0-3.fc38.x86_64                                                
  rpm-build-libs-4.18.0-3.fc38.x86_64                                           
  rpm-libs-4.18.0-3.fc38.x86_64                                                 
  rpmautospec-rpm-macros-0.3.0-1.fc37.noarch                                    
  rust-srpm-macros-23-1.fc38.noarch                                             
  sed-4.8-11.fc37.x86_64                                                        
  setup-2.14.2-1.fc38.noarch                                                    
  shadow-utils-2:4.12.3-3.fc38.x86_64                                           
  sqlite-libs-3.39.4-1.fc38.x86_64                                              
  systemd-libs-252-587.fc38.x86_64                                              
  tar-2:1.34-5.fc38.x86_64                                                      
  tzdata-2022f-1.fc38.noarch                                                    
  unzip-6.0-58.fc37.x86_64                                                      
  util-linux-2.38.1-2.fc38.x86_64                                               
  util-linux-core-2.38.1-2.fc38.x86_64                                          
  which-2.21-35.fc37.x86_64                                                     
  xxhash-libs-0.8.1-3.fc37.x86_64                                               
  xz-5.2.7-1.fc38.x86_64                                                        
  xz-libs-5.2.7-1.fc38.x86_64                                                   
  zip-3.0-33.fc37.x86_64                                                        
  zlib-1.2.12-5.fc38.x86_64                                                     
  zstd-1.5.2-3.fc37.x86_64                                                      

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libnghttp2-1.50.0-1.fc38.x86_64
fedora-release-identity-basic-38-0.4.noarch
gmp-6.2.1-3.fc37.x86_64
fedora-repos-38-0.3.noarch
kernel-srpm-macros-1.0-15.fc37.noarch
elfutils-debuginfod-client-0.188-2.fc38.x86_64
fonts-srpm-macros-2.0.5-9.fc38.noarch
publicsuffix-list-dafsa-20210518-5.fc37.noarch
zstd-1.5.2-3.fc37.x86_64
elfutils-default-yama-scope-0.188-2.fc38.noarch
cracklib-2.9.7-30.fc38.x86_64
redhat-rpm-config-232-1.fc38.noarch
ca-certificates-2022.2.54-5.fc37.noarch
info-6.8-4.fc37.x86_64
libssh-config-0.10.4-2.fc38.noarch
fedora-gpg-keys-38-0.3.noarch
zlib-1.2.12-5.fc38.x86_64
ed-1.18-2.fc37.x86_64
fedora-repos-rawhide-38-0.3.noarch
package-notes-srpm-macros-0.5-6.fc38.noarch
bash-5.2.2-2.fc38.x86_64
pcre2-10.40-1.fc37.1.x86_64
libsmartcols-2.38.1-2.fc38.x86_64
xz-5.2.7-1.fc38.x86_64
efi-srpm-macros-5-6.fc37.noarch
libcurl-7.86.0-2.fc38.x86_64
pcre2-syntax-10.40-1.fc37.1.noarch
libacl-2.3.1-4.fc37.x86_64
authselect-libs-1.4.0-3.fc37.x86_64
audit-libs-3.0.9-1.fc38.x86_64
binutils-gold-2.39-3.fc38.x86_64
file-5.42-4.fc37.x86_64
ocaml-srpm-macros-7-2.fc37.noarch
popt-1.19-1.fc38.x86_64
gzip-1.12-2.fc37.x86_64
rpmautospec-rpm-macros-0.3.0-1.fc37.noarch
readline-8.2-2.fc38.x86_64
unzip-6.0-58.fc37.x86_64
libmount-2.38.1-2.fc38.x86_64
libdb-5.3.28-53.fc37.x86_64
fpc-srpm-macros-1.3-6.fc37.noarch
libcap-ng-0.8.3-3.fc37.x86_64
elfutils-0.188-2.fc38.x86_64
p11-kit-trust-0.24.1-3.fc37.x86_64
lua-libs-5.4.4-6.fc38.x86_64
gawk-5.1.1-4.fc37.x86_64
libstdc++-12.2.1-2.fc38.x86_64
libzstd-1.5.2-3.fc37.x86_64
pkgconf-pkg-config-1.8.0-3.fc37.x86_64
crypto-policies-20221003-1.gitcb1ad32.fc38.noarch
basesystem-11-14.fc37.noarch
libgomp-12.2.1-2.fc38.x86_64
util-linux-core-2.38.1-2.fc38.x86_64
p11-kit-0.24.1-3.fc37.x86_64
pkgconf-1.8.0-3.fc37.x86_64
libpwquality-1.4.4-11.fc37.x86_64
cyrus-sasl-lib-2.1.28-8.fc38.x86_64
gpg-pubkey-eb10b464-6202d9c6
libeconf-0.4.0-4.fc37.x86_64
ncurses-libs-6.3-3.20220501.fc37.x86_64
libfdisk-2.38.1-2.fc38.x86_64
util-linux-2.38.1-2.fc38.x86_64
libxcrypt-4.4.30-1.fc38.x86_64
shadow-utils-4.12.3-3.fc38.x86_64
gdbm-libs-1.23-2.fc37.x86_64
libffi-3.4.2-9.fc37.x86_64
tzdata-2022f-1.fc38.noarch
coreutils-9.1-8.fc38.x86_64
openblas-srpm-macros-2-12.fc37.noarch
libsigsegv-2.14-3.fc37.x86_64
libgcc-12.2.1-2.fc38.x86_64
libsemanage-3.4-5.fc37.x86_64
glibc-common-2.36.9000-11.fc38.x86_64
libblkid-2.38.1-2.fc38.x86_64
setup-2.14.2-1.fc38.noarch
rpm-build-4.18.0-3.fc38.x86_64
elfutils-libelf-0.188-2.fc38.x86_64
libutempter-1.2.1-7.fc37.x86_64
sqlite-libs-3.39.4-1.fc38.x86_64
glibc-minimal-langpack-2.36.9000-11.fc38.x86_64
keyutils-libs-1.6.1-5.fc37.x86_64
dwz-0.15-1.fc38.x86_64
bzip2-libs-1.0.8-12.fc37.x86_64
pam-libs-1.5.2-14.fc37.x86_64
rpm-build-libs-4.18.0-3.fc38.x86_64
xz-libs-5.2.7-1.fc38.x86_64
libxml2-2.10.3-2.fc38.x86_64
coreutils-common-9.1-8.fc38.x86_64
authselect-1.4.0-3.fc37.x86_64
binutils-2.39-3.fc38.x86_64
elfutils-libs-0.188-2.fc38.x86_64
qt5-srpm-macros-5.15.7-1.fc38.noarch
libpkgconf-1.8.0-3.fc37.x86_64
libidn2-2.3.4-1.fc38.x86_64
ghc-srpm-macros-1.5.0-7.fc37.noarch
libattr-2.5.1-5.fc37.x86_64
perl-srpm-macros-1-46.fc37.noarch
mpfr-4.1.0-10.fc37.x86_64
bzip2-1.0.8-12.fc37.x86_64
glibc-gconv-extra-2.36.9000-11.fc38.x86_64
rpm-libs-4.18.0-3.fc38.x86_64
gnat-srpm-macros-4-16.fc37.noarch
systemd-libs-252-587.fc38.x86_64
gdb-minimal-12.1-9.fc38.x86_64
rpm-4.18.0-3.fc38.x86_64
patch-2.7.6-17.fc37.x86_64
pkgconf-m4-1.8.0-3.fc37.noarch
openssl-libs-3.0.5-6.fc38.x86_64
glibc-2.36.9000-11.fc38.x86_64
lua-srpm-macros-1-7.fc37.noarch
cpio-2.13-13.fc38.x86_64
file-libs-5.42-4.fc37.x86_64
pam-1.5.2-14.fc37.x86_64
jansson-2.13.1-5.fc37.x86_64
libuuid-2.38.1-2.fc38.x86_64
fedora-release-38-0.4.noarch
libpsl-0.21.1-6.fc37.x86_64
libevent-2.1.12-7.fc37.x86_64
zip-3.0-33.fc37.x86_64
libverto-0.3.2-4.fc37.x86_64
libsepol-3.4-3.fc37.x86_64
libunistring-1.0-2.fc37.x86_64
ncurses-base-6.3-3.20220501.fc37.noarch
libbrotli-1.0.9-9.fc37.x86_64
sed-4.8-11.fc37.x86_64
fedora-release-common-38-0.4.noarch
libcom_err-1.46.5-3.fc37.x86_64
libtasn1-4.18.0-3.fc37.x86_64
curl-7.86.0-2.fc38.x86_64
libnsl2-2.0.0-4.fc37.x86_64
ansible-srpm-macros-1-8.1.fc38.noarch
xxhash-libs-0.8.1-3.fc37.x86_64
grep-3.8-1.fc38.x86_64
libtirpc-1.3.3-0.fc37.x86_64
which-2.21-35.fc37.x86_64
rust-srpm-macros-23-1.fc38.noarch
filesystem-3.18-2.fc37.x86_64
krb5-libs-1.19.2-11.fc37.1.x86_64
python-srpm-macros-3.11-5.fc38.noarch
libssh-0.10.4-2.fc38.x86_64
openldap-2.6.3-1.fc38.x86_64
diffutils-3.8-3.fc37.x86_64
gpg-pubkey-5323552a-6112bcdc
libcap-2.48-5.fc37.x86_64
nim-srpm-macros-3-7.fc37.noarch
alternatives-1.21-1.fc38.x86_64
findutils-4.9.0-2.fc37.x86_64
debugedit-5.0-5.fc37.x86_64
tar-1.34-5.fc38.x86_64
libselinux-3.4-5.fc37.x86_64
libarchive-3.6.1-2.fc37.x86_64
go-srpm-macros-3.2.0-1.fc38.noarch
lz4-libs-1.9.3-5.fc37.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1661212800
Wrote: /builddir/build/SRPMS/bcftools-1.15.1-2.fc38.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qyms0zlv/bcftools/bcftools.spec) Config(child) 1 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bcftools-1.15.1-2.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667626114.328037 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/bcftools-1.15.1-2.fc38.src.rpm)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667626114.328037/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667626114.328037/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.3
INFO: Mock Version: 3.3
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.3
INFO: Mock Version: 3.3
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  47 kB/s | 3.0 kB     00:00    
Copr repository                                  13 MB/s | 7.1 MB     00:00    
fedora                                          200 kB/s | 9.1 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for bcftools-1.15.1-2.fc38.src.rpm
Start: build setup for bcftools-1.15.1-2.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1661212800
Wrote: /builddir/build/SRPMS/bcftools-1.15.1-2.fc38.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  49 kB/s | 3.0 kB     00:00    
fedora                                          196 kB/s | 9.1 kB     00:00    
Dependencies resolved.
================================================================================
 Package                 Arch   Version                         Repo       Size
================================================================================
Installing:
 gcc                     x86_64 12.2.1-2.fc38                   fedora     33 M
 gsl-devel               x86_64 2.7.1-2.fc38                    fedora    653 k
 htslib-devel            x86_64 1.15.1-1.fc38                   fedora    105 k
 htslib-tools            x86_64 1.15.1-1.fc38                   fedora    533 k
 make                    x86_64 1:4.4-1.fc38                    copr_base 571 k
 perl-ExtUtils-Embed     noarch 1.35-492.fc38                   fedora     21 k
 perl-File-Temp          noarch 1:0.231.100-489.fc37            fedora     59 k
 perl-FindBin            noarch 1.53-492.fc38                   fedora     17 k
 perl-Getopt-Long        noarch 1:2.52-489.fc37                 fedora     60 k
 perl-interpreter        x86_64 4:5.36.0-492.fc38               fedora     75 k
 zlib-devel              x86_64 1.2.12-5.fc38                   fedora     44 k
Installing dependencies:
 annobin-docs            noarch 10.91-1.fc38                    fedora     92 k
 annobin-plugin-gcc      x86_64 10.91-1.fc38                    fedora    888 k
 autoconf                noarch 2.71-4.fc38                     fedora    733 k
 automake                noarch 1.16.5-9.fc37                   fedora    696 k
 cpp                     x86_64 12.2.1-2.fc38                   fedora     11 M
 emacs-filesystem        noarch 1:28.1-3.fc37                   fedora    9.5 k
 expat                   x86_64 2.4.8-2.fc37                    fedora    110 k
 gc                      x86_64 8.2.2-1.fc38                    fedora    110 k
 gcc-plugin-annobin      x86_64 12.2.1-2.fc38                   fedora     51 k
 glibc-devel             x86_64 2.36.9000-11.fc38               fedora     39 k
 glibc-headers-x86       noarch 2.36.9000-11.fc38               fedora    516 k
 groff-base              x86_64 1.22.4-10.fc37                  fedora    1.1 M
 gsl                     x86_64 2.7.1-2.fc38                    fedora    1.1 M
 guile22                 x86_64 2.2.7-6.fc37                    fedora    6.5 M
 htslib                  x86_64 1.15.1-1.fc38                   fedora    487 k
 kernel-headers          x86_64 6.1.0-0.rc2.git0.1.fc38         fedora    1.5 M
 libb2                   x86_64 0.98.1-7.fc37                   fedora     25 k
 libmpc                  x86_64 1.2.1-5.fc37                    fedora     61 k
 libtool-ltdl            x86_64 2.4.7-2.fc37                    fedora     37 k
 libxcrypt-devel         x86_64 4.4.30-1.fc38                   fedora     28 k
 m4                      x86_64 1.4.19-4.fc37                   fedora    303 k
 mpdecimal               x86_64 2.5.1-4.fc37                    fedora    102 k
 ncurses                 x86_64 6.3-3.20220501.fc37             fedora    409 k
 perl-AutoSplit          noarch 5.74-492.fc38                   fedora     25 k
 perl-B                  x86_64 1.83-492.fc38                   fedora    184 k
 perl-Benchmark          noarch 1.23-492.fc38                   fedora     30 k
 perl-Carp               noarch 1.52-489.fc37                   fedora     29 k
 perl-Class-Struct       noarch 0.66-492.fc38                   fedora     25 k
 perl-Data-Dumper        x86_64 2.184-490.fc37                  fedora     56 k
 perl-Devel-PPPort       x86_64 3.68-490.fc37                   fedora    218 k
 perl-DynaLoader         x86_64 1.52-492.fc38                   fedora     29 k
 perl-Encode             x86_64 4:3.19-492.fc38                 fedora    1.7 M
 perl-Errno              x86_64 1.36-492.fc38                   fedora     18 k
 perl-Exporter           noarch 5.77-489.fc37                   fedora     31 k
 perl-ExtUtils-Command   noarch 2:7.64-490.fc37                 fedora     14 k
 perl-ExtUtils-Constant  noarch 0.25-492.fc38                   fedora     50 k
 perl-ExtUtils-Install   noarch 2.20-489.fc37                   fedora     44 k
 perl-ExtUtils-MakeMaker noarch 2:7.64-490.fc37                 fedora    301 k
 perl-ExtUtils-Manifest  noarch 1:1.73-489.fc37                 fedora     34 k
 perl-ExtUtils-ParseXS   noarch 1:3.45-489.fc37                 fedora    188 k
 perl-Fcntl              x86_64 1.15-492.fc38                   fedora     24 k
 perl-File-Basename      noarch 2.85-492.fc38                   fedora     20 k
 perl-File-Compare       noarch 1.100.700-492.fc38              fedora     16 k
 perl-File-Copy          noarch 2.39-492.fc38                   fedora     23 k
 perl-File-Find          noarch 1.40-492.fc38                   fedora     28 k
 perl-File-Path          noarch 2.18-489.fc37                   fedora     35 k
 perl-File-stat          noarch 1.12-492.fc38                   fedora     20 k
 perl-Getopt-Std         noarch 1.13-492.fc38                   fedora     19 k
 perl-HTTP-Tiny          noarch 0.082-1.fc37                    fedora     55 k
 perl-IO                 x86_64 1.50-492.fc38                   fedora     95 k
 perl-IPC-Open3          noarch 1.22-492.fc38                   fedora     26 k
 perl-MIME-Base64        x86_64 3.16-489.fc37                   fedora     30 k
 perl-POSIX              x86_64 2.03-492.fc38                   fedora    101 k
 perl-PathTools          x86_64 3.84-489.fc37                   fedora     89 k
 perl-Pod-Escapes        noarch 1:1.07-489.fc37                 fedora     20 k
 perl-Pod-Perldoc        noarch 3.28.01-490.fc37                fedora     90 k
 perl-Pod-Simple         noarch 1:3.43-490.fc37                 fedora    225 k
 perl-Pod-Usage          noarch 4:2.03-3.fc37                   fedora     40 k
 perl-Scalar-List-Utils  x86_64 5:1.63-489.fc38                 fedora     72 k
 perl-SelectSaver        noarch 1.02-492.fc38                   fedora     15 k
 perl-Socket             x86_64 4:2.036-1.fc38                  fedora     55 k
 perl-Storable           x86_64 1:3.26-489.fc37                 fedora     97 k
 perl-Symbol             noarch 1.09-492.fc38                   fedora     17 k
 perl-Term-ANSIColor     noarch 5.01-490.fc37                   fedora     48 k
 perl-Term-Cap           noarch 1.17-489.fc37                   fedora     22 k
 perl-Test-Harness       noarch 1:3.44-490.fc37                 fedora    288 k
 perl-Text-ParseWords    noarch 3.31-489.fc37                   fedora     16 k
 perl-Text-Tabs+Wrap     noarch 2021.0814-489.fc37              fedora     22 k
 perl-Thread-Queue       noarch 3.14-489.fc37                   fedora     21 k
 perl-Time-Local         noarch 2:1.300-489.fc37                fedora     33 k
 perl-base               noarch 2.27-492.fc38                   fedora     19 k
 perl-constant           noarch 1.33-490.fc37                   fedora     23 k
 perl-devel              x86_64 4:5.36.0-492.fc38               fedora    714 k
 perl-if                 noarch 0.61.000-492.fc38               fedora     17 k
 perl-lib                x86_64 0.65-492.fc38                   fedora     18 k
 perl-libs               x86_64 4:5.36.0-492.fc38               fedora    2.2 M
 perl-locale             noarch 1.10-492.fc38                   fedora     17 k
 perl-mro                x86_64 1.26-492.fc38                   fedora     32 k
 perl-overload           noarch 1.35-492.fc38                   fedora     49 k
 perl-overloading        noarch 0.02-492.fc38                   fedora     16 k
 perl-parent             noarch 1:0.238-489.fc37                fedora     14 k
 perl-podlators          noarch 1:4.14-489.fc37                 fedora    116 k
 perl-subs               noarch 1.04-492.fc38                   fedora     15 k
 perl-threads            x86_64 1:2.27-489.fc37                 fedora     57 k
 perl-threads-shared     x86_64 1.64-489.fc37                   fedora     44 k
 perl-vars               noarch 1.05-492.fc38                   fedora     16 k
 perl-version            x86_64 8:0.99.29-490.fc37              fedora     63 k
 python-pip-wheel        noarch 22.2.2-2.fc38                   fedora    1.4 M
 python-setuptools-wheel noarch 65.5.0-1.fc38                   fedora    715 k
 python3                 x86_64 3.11.0-1.fc38                   fedora     27 k
 python3-libs            x86_64 3.11.0-1.fc38                   fedora    9.6 M
 python3-pyparsing       noarch 3.0.9-2.fc37                    fedora    262 k
 systemtap-sdt-devel     x86_64 4.8~pre16650659g6a096a7d-1.fc38 fedora     73 k

Transaction Summary
================================================================================
Install  104 Packages

Total size: 80 M
Total download size: 6.9 M
Installed size: 277 M
Downloading Packages:
[SKIPPED] make-4.4-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] annobin-docs-10.91-1.fc38.noarch.rpm: Already downloaded             
[SKIPPED] annobin-plugin-gcc-10.91-1.fc38.x86_64.rpm: Already downloaded       
[SKIPPED] cpp-12.2.1-2.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] expat-2.4.8-2.fc37.x86_64.rpm: Already downloaded                    
[SKIPPED] gc-8.2.2-1.fc38.x86_64.rpm: Already downloaded                       
[SKIPPED] gcc-12.2.1-2.fc38.x86_64.rpm: Already downloaded                     
[SKIPPED] gcc-plugin-annobin-12.2.1-2.fc38.x86_64.rpm: Already downloaded      
[SKIPPED] glibc-devel-2.36.9000-11.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] glibc-headers-x86-2.36.9000-11.fc38.noarch.rpm: Already downloaded   
[SKIPPED] groff-base-1.22.4-10.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] guile22-2.2.7-6.fc37.x86_64.rpm: Already downloaded                  
[SKIPPED] kernel-headers-6.1.0-0.rc2.git0.1.fc38.x86_64.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-7.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libmpc-1.2.1-5.fc37.x86_64.rpm: Already downloaded                   
[SKIPPED] libtool-ltdl-2.4.7-2.fc37.x86_64.rpm: Already downloaded             
[SKIPPED] libxcrypt-devel-4.4.30-1.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] mpdecimal-2.5.1-4.fc37.x86_64.rpm: Already downloaded                
[SKIPPED] ncurses-6.3-3.20220501.fc37.x86_64.rpm: Already downloaded           
[SKIPPED] perl-B-1.83-492.fc38.x86_64.rpm: Already downloaded                  
[SKIPPED] perl-Carp-1.52-489.fc37.noarch.rpm: Already downloaded               
[SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded       
[SKIPPED] perl-Data-Dumper-2.184-490.fc37.x86_64.rpm: Already downloaded       
[SKIPPED] perl-DynaLoader-1.52-492.fc38.x86_64.rpm: Already downloaded         
[SKIPPED] perl-Encode-3.19-492.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] perl-Errno-1.36-492.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] perl-Exporter-5.77-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Fcntl-1.15-492.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] perl-File-Basename-2.85-492.fc38.noarch.rpm: Already downloaded      
[SKIPPED] perl-File-Compare-1.100.700-492.fc38.noarch.rpm: Already downloaded  
[SKIPPED] perl-File-Copy-2.39-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Find-1.40-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Path-2.18-489.fc37.noarch.rpm: Already downloaded          
[SKIPPED] perl-File-Temp-0.231.100-489.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-File-stat-1.12-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-FindBin-1.53-492.fc38.noarch.rpm: Already downloaded            
[SKIPPED] perl-Getopt-Long-2.52-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-Getopt-Std-1.13-492.fc38.noarch.rpm: Already downloaded         
[SKIPPED] perl-HTTP-Tiny-0.082-1.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-IO-1.50-492.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] perl-IPC-Open3-1.22-492.fc38.noarch.rpm: Already downloaded          
[SKIPPED] perl-MIME-Base64-3.16-489.fc37.x86_64.rpm: Already downloaded        
[SKIPPED] perl-POSIX-2.03-492.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] perl-PathTools-3.84-489.fc37.x86_64.rpm: Already downloaded          
[SKIPPED] perl-Pod-Escapes-1.07-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-Pod-Perldoc-3.28.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Pod-Simple-3.43-490.fc37.noarch.rpm: Already downloaded         
[SKIPPED] perl-Pod-Usage-2.03-3.fc37.noarch.rpm: Already downloaded            
[SKIPPED] perl-Scalar-List-Utils-1.63-489.fc38.x86_64.rpm: Already downloaded  
[SKIPPED] perl-SelectSaver-1.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-Socket-2.036-1.fc38.x86_64.rpm: Already downloaded              
[SKIPPED] perl-Storable-3.26-489.fc37.x86_64.rpm: Already downloaded           
[SKIPPED] perl-Symbol-1.09-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-Term-ANSIColor-5.01-490.fc37.noarch.rpm: Already downloaded     
[SKIPPED] perl-Term-Cap-1.17-489.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-Text-ParseWords-3.31-489.fc37.noarch.rpm: Already downloaded    
[SKIPPED] perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch.rpm: Already downloaded
[SKIPPED] perl-Time-Local-1.300-489.fc37.noarch.rpm: Already downloaded        
[SKIPPED] perl-base-2.27-492.fc38.noarch.rpm: Already downloaded               
[SKIPPED] perl-constant-1.33-490.fc37.noarch.rpm: Already downloaded           
[SKIPPED] perl-if-0.61.000-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-interpreter-5.36.0-492.fc38.x86_64.rpm: Already downloaded      
[SKIPPED] perl-lib-0.65-492.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] perl-libs-5.36.0-492.fc38.x86_64.rpm: Already downloaded             
[SKIPPED] perl-locale-1.10-492.fc38.noarch.rpm: Already downloaded             
[SKIPPED] perl-mro-1.26-492.fc38.x86_64.rpm: Already downloaded                
[SKIPPED] perl-overload-1.35-492.fc38.noarch.rpm: Already downloaded           
[SKIPPED] perl-overloading-0.02-492.fc38.noarch.rpm: Already downloaded        
[SKIPPED] perl-parent-0.238-489.fc37.noarch.rpm: Already downloaded            
[SKIPPED] perl-podlators-4.14-489.fc37.noarch.rpm: Already downloaded          
[SKIPPED] perl-subs-1.04-492.fc38.noarch.rpm: Already downloaded               
[SKIPPED] perl-vars-1.05-492.fc38.noarch.rpm: Already downloaded               
[SKIPPED] perl-version-0.99.29-490.fc37.x86_64.rpm: Already downloaded         
[SKIPPED] python-pip-wheel-22.2.2-2.fc38.noarch.rpm: Already downloaded        
[SKIPPED] python-setuptools-wheel-65.5.0-1.fc38.noarch.rpm: Already downloaded 
[SKIPPED] python3-3.11.0-1.fc38.x86_64.rpm: Already downloaded                 
[SKIPPED] python3-libs-3.11.0-1.fc38.x86_64.rpm: Already downloaded            
(78/104): emacs-filesystem-28.1-3.fc37.noarch.r 120 kB/s | 9.5 kB     00:00    
(79/104): automake-1.16.5-9.fc37.noarch.rpm     2.4 MB/s | 696 kB     00:00    
(80/104): autoconf-2.71-4.fc38.noarch.rpm       2.5 MB/s | 733 kB     00:00    
(81/104): htslib-1.15.1-1.fc38.x86_64.rpm       8.2 MB/s | 487 kB     00:00    
(82/104): gsl-devel-2.7.1-2.fc38.x86_64.rpm      11 MB/s | 653 kB     00:00    
(83/104): gsl-2.7.1-2.fc38.x86_64.rpm           3.9 MB/s | 1.1 MB     00:00    
(84/104): htslib-devel-1.15.1-1.fc38.x86_64.rpm 2.5 MB/s | 105 kB     00:00    
(85/104): htslib-tools-1.15.1-1.fc38.x86_64.rpm  11 MB/s | 533 kB     00:00    
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Total                                           9.1 MB/s | 6.9 MB     00:00     
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Installed:
  annobin-docs-10.91-1.fc38.noarch                                              
  annobin-plugin-gcc-10.91-1.fc38.x86_64                                        
  autoconf-2.71-4.fc38.noarch                                                   
  automake-1.16.5-9.fc37.noarch                                                 
  cpp-12.2.1-2.fc38.x86_64                                                      
  emacs-filesystem-1:28.1-3.fc37.noarch                                         
  expat-2.4.8-2.fc37.x86_64                                                     
  gc-8.2.2-1.fc38.x86_64                                                        
  gcc-12.2.1-2.fc38.x86_64                                                      
  gcc-plugin-annobin-12.2.1-2.fc38.x86_64                                       
  glibc-devel-2.36.9000-11.fc38.x86_64                                          
  glibc-headers-x86-2.36.9000-11.fc38.noarch                                    
  groff-base-1.22.4-10.fc37.x86_64                                              
  gsl-2.7.1-2.fc38.x86_64                                                       
  gsl-devel-2.7.1-2.fc38.x86_64                                                 
  guile22-2.2.7-6.fc37.x86_64                                                   
  htslib-1.15.1-1.fc38.x86_64                                                   
  htslib-devel-1.15.1-1.fc38.x86_64                                             
  htslib-tools-1.15.1-1.fc38.x86_64                                             
  kernel-headers-6.1.0-0.rc2.git0.1.fc38.x86_64                                 
  libb2-0.98.1-7.fc37.x86_64                                                    
  libmpc-1.2.1-5.fc37.x86_64                                                    
  libtool-ltdl-2.4.7-2.fc37.x86_64                                              
  libxcrypt-devel-4.4.30-1.fc38.x86_64                                          
  m4-1.4.19-4.fc37.x86_64                                                       
  make-1:4.4-1.fc38.x86_64                                                      
  mpdecimal-2.5.1-4.fc37.x86_64                                                 
  ncurses-6.3-3.20220501.fc37.x86_64                                            
  perl-AutoSplit-5.74-492.fc38.noarch                                           
  perl-B-1.83-492.fc38.x86_64                                                   
  perl-Benchmark-1.23-492.fc38.noarch                                           
  perl-Carp-1.52-489.fc37.noarch                                                
  perl-Class-Struct-0.66-492.fc38.noarch                                        
  perl-Data-Dumper-2.184-490.fc37.x86_64                                        
  perl-Devel-PPPort-3.68-490.fc37.x86_64                                        
  perl-DynaLoader-1.52-492.fc38.x86_64                                          
  perl-Encode-4:3.19-492.fc38.x86_64                                            
  perl-Errno-1.36-492.fc38.x86_64                                               
  perl-Exporter-5.77-489.fc37.noarch                                            
  perl-ExtUtils-Command-2:7.64-490.fc37.noarch                                  
  perl-ExtUtils-Constant-0.25-492.fc38.noarch                                   
  perl-ExtUtils-Embed-1.35-492.fc38.noarch                                      
  perl-ExtUtils-Install-2.20-489.fc37.noarch                                    
  perl-ExtUtils-MakeMaker-2:7.64-490.fc37.noarch                                
  perl-ExtUtils-Manifest-1:1.73-489.fc37.noarch                                 
  perl-ExtUtils-ParseXS-1:3.45-489.fc37.noarch                                  
  perl-Fcntl-1.15-492.fc38.x86_64                                               
  perl-File-Basename-2.85-492.fc38.noarch                                       
  perl-File-Compare-1.100.700-492.fc38.noarch                                   
  perl-File-Copy-2.39-492.fc38.noarch                                           
  perl-File-Find-1.40-492.fc38.noarch                                           
  perl-File-Path-2.18-489.fc37.noarch                                           
  perl-File-Temp-1:0.231.100-489.fc37.noarch                                    
  perl-File-stat-1.12-492.fc38.noarch                                           
  perl-FindBin-1.53-492.fc38.noarch                                             
  perl-Getopt-Long-1:2.52-489.fc37.noarch                                       
  perl-Getopt-Std-1.13-492.fc38.noarch                                          
  perl-HTTP-Tiny-0.082-1.fc37.noarch                                            
  perl-IO-1.50-492.fc38.x86_64                                                  
  perl-IPC-Open3-1.22-492.fc38.noarch                                           
  perl-MIME-Base64-3.16-489.fc37.x86_64                                         
  perl-POSIX-2.03-492.fc38.x86_64                                               
  perl-PathTools-3.84-489.fc37.x86_64                                           
  perl-Pod-Escapes-1:1.07-489.fc37.noarch                                       
  perl-Pod-Perldoc-3.28.01-490.fc37.noarch                                      
  perl-Pod-Simple-1:3.43-490.fc37.noarch                                        
  perl-Pod-Usage-4:2.03-3.fc37.noarch                                           
  perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64                                 
  perl-SelectSaver-1.02-492.fc38.noarch                                         
  perl-Socket-4:2.036-1.fc38.x86_64                                             
  perl-Storable-1:3.26-489.fc37.x86_64                                          
  perl-Symbol-1.09-492.fc38.noarch                                              
  perl-Term-ANSIColor-5.01-490.fc37.noarch                                      
  perl-Term-Cap-1.17-489.fc37.noarch                                            
  perl-Test-Harness-1:3.44-490.fc37.noarch                                      
  perl-Text-ParseWords-3.31-489.fc37.noarch                                     
  perl-Text-Tabs+Wrap-2021.0814-489.fc37.noarch                                 
  perl-Thread-Queue-3.14-489.fc37.noarch                                        
  perl-Time-Local-2:1.300-489.fc37.noarch                                       
  perl-base-2.27-492.fc38.noarch                                                
  perl-constant-1.33-490.fc37.noarch                                            
  perl-devel-4:5.36.0-492.fc38.x86_64                                           
  perl-if-0.61.000-492.fc38.noarch                                              
  perl-interpreter-4:5.36.0-492.fc38.x86_64                                     
  perl-lib-0.65-492.fc38.x86_64                                                 
  perl-libs-4:5.36.0-492.fc38.x86_64                                            
  perl-locale-1.10-492.fc38.noarch                                              
  perl-mro-1.26-492.fc38.x86_64                                                 
  perl-overload-1.35-492.fc38.noarch                                            
  perl-overloading-0.02-492.fc38.noarch                                         
  perl-parent-1:0.238-489.fc37.noarch                                           
  perl-podlators-1:4.14-489.fc37.noarch                                         
  perl-subs-1.04-492.fc38.noarch                                                
  perl-threads-1:2.27-489.fc37.x86_64                                           
  perl-threads-shared-1.64-489.fc37.x86_64                                      
  perl-vars-1.05-492.fc38.noarch                                                
  perl-version-8:0.99.29-490.fc37.x86_64                                        
  python-pip-wheel-22.2.2-2.fc38.noarch                                         
  python-setuptools-wheel-65.5.0-1.fc38.noarch                                  
  python3-3.11.0-1.fc38.x86_64                                                  
  python3-libs-3.11.0-1.fc38.x86_64                                             
  python3-pyparsing-3.0.9-2.fc37.noarch                                         
  systemtap-sdt-devel-4.8~pre16650659g6a096a7d-1.fc38.x86_64                    
  zlib-devel-1.2.12-5.fc38.x86_64                                               

Complete!
Finish: build setup for bcftools-1.15.1-2.fc38.src.rpm
Start: rpmbuild bcftools-1.15.1-2.fc38.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1661212800
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.o8NvKP
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf bcftools-1.15.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bcftools-1.15.1.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd bcftools-1.15.1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (bcftools-1.15.1-aarch64-fix-vcf_plugin-tests.patch):'
Patch #0 (bcftools-1.15.1-aarch64-fix-vcf_plugin-tests.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0
patching file plugins/fill-tags.c
+ sed -i '1s|/usr/bin/env perl|/usr/bin/perl|' misc/color-chrs.pl misc/demo-flt.pl misc/run-roh.pl misc/vcfutils.pl misc/plot-vcfstats
+ sed -i '1s|/usr/bin/env python3\{0,1\}|/usr/bin/python3|' misc/gff2gff.py misc/guess-ploidy.py misc/plot-roh.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3d5BX0
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2022-11-05 05:29:50.925120704 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' --prefix=/usr --with-htslib=system --enable-perl-filters --enable-libgsl '--with-bcf-plugin-path=/usr/local/libexec/bcftools:$(plugindir)'
checking for x86_64-redhat-linux-gnu-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking shared library type... plain .so
checking for library containing dlopen... none required
checking if the compiler accepts -rdynamic... yes
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for gsl/gsl_version.h... yes
checking for library containing cblas_dgemm... -lgslcblas
checking for gsl_multifit_gradient in -lgsl... yes
checking for library containing Perl_call_pv... -lperl
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
configure: License has been changed to GPL.

Linking against the GNU scientific library requires that the resulting
binary is licensed using the GNU General Public License.  In particular,
this means you will have to follow the terms of this license in order
to distribute binary copies.  For more information see the INSTALL file.

Text of the GNU General Public License can be found in the LICENSE file,
or at http://www.gnu.org/copyleft/gpl.html

Information on the GNU Scientific Library, including the rationale for
its choice of license can be found at https://www.gnu.org/software/gsl/

+ /usr/bin/make -O -j2 V=1 VERBOSE=1
echo '#define BCFTOOLS_VERSION "1.15.1"' > version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o tabix.o tabix.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfindex.o vcfindex.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfisec.o vcfisec.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfstats.o vcfstats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfquery.o vcfquery.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcffilter.o vcffilter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfmerge.o vcfmerge.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfsom.o vcfsom.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib64/perl5/CORE  -c -o filter.o filter.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfgtcheck.o vcfgtcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfnorm.o vcfnorm.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfview.o vcfview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfroh.o vcfroh.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfconcat.o vcfconcat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfannotate.o vcfannotate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfcall.o vcfcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcmp.o vcmp.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o gvcf.o gvcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o mcall.o mcall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o reheader.o reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfconvert.o vcfconvert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o tsv2vcf.o tsv2vcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o convert.o convert.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfhead.o vcfhead.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfcnv.o vcfcnv.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o HMM.o HMM.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o ploidy.o ploidy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o bin.o bin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o consensus.o consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o hclust.o hclust.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o version.o version.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o smpl_ilist.o smpl_ilist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o regidx.o regidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfbuf.o vcfbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o mpileup.o mpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o bam2bcf.o bam2bcf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o csq.o csq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o bam2bcf_indel.o bam2bcf_indel.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o vcfsort.o vcfsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o cols.o cols.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o extsort.o extsort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o bam_sample.o bam_sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o dist.o dist.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o ccall.o ccall.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o em.o em.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o abuf.o abuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o kmin.o kmin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o str_finder.o str_finder.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o prob1.o prob1.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o peakfit.o peakfit.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o polysomy.o polysomy.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o test/test-rbuf.o test/test-rbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.   -DPLUGINPATH='"/usr/local/libexec/bcftools:/usr/libexec/bcftools"' -c -o vcfplugin.o vcfplugin.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -c -o test/test-regidx.o test/test-regidx.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/GTsubset.so version.c plugins/GTsubset.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/GTisec.so version.c plugins/GTisec.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/add-variantkey.so version.c plugins/add-variantkey.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/af-dist.so bin.c version.c plugins/af-dist.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/allele-length.so version.c plugins/allele-length.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/check-ploidy.so version.c plugins/check-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/check-sparsity.so version.c plugins/check-sparsity.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/color-chrs.so HMM.c version.c plugins/color-chrs.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/ad-bias.so convert.c version.c plugins/ad-bias.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/counts.so version.c plugins/counts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/contrast.so version.c plugins/contrast.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/dosage.so version.c plugins/dosage.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/fill-AN-AC.so version.c plugins/fill-AN-AC.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/fill-tags.so version.c plugins/fill-tags.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/fixploidy.so ploidy.c regidx.c version.c plugins/fixploidy.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/fixref.so version.c plugins/fixref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/frameshifts.so version.c plugins/frameshifts.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -D_REENTRANT -D_GNU_SOURCE -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fwrapv -fno-strict-aliasing -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64  -I/usr/lib64/perl5/CORE  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/fill-from-fasta.so filter.c version.c plugins/fill-from-fasta.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/guess-ploidy.so version.c plugins/guess-ploidy.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/gvcfz.so version.c plugins/gvcfz.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/impute-info.so version.c plugins/impute-info.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/isecGT.so smpl_ilist.c version.c plugins/isecGT.c  
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/indel-stats.so version.c plugins/indel-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/missing2ref.so version.c plugins/missing2ref.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/mendelian.so version.c plugins/mendelian.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/parental-origin.so version.c plugins/parental-origin.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/prune.so version.c plugins/prune.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/remove-overlaps.so version.c plugins/remove-overlaps.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/scatter.so version.c plugins/scatter.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/setGT.so version.c plugins/setGT.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/smpl-stats.so version.c plugins/smpl-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/split-vep.so version.c plugins/split-vep.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/split.so version.c plugins/split.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/tag2tag.so version.c plugins/tag2tag.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/trio-stats.so version.c plugins/trio-stats.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/trio-dnm2.so version.c plugins/trio-dnm2.c 
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/trio-switch-rate.so version.c plugins/trio-switch-rate.c 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.   -DUSE_GPL -c -o main.o main.c
gcc -fPIC -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I.    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o plugins/variantkey-hex.so version.c plugins/variantkey-hex.c 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/test-rbuf test/test-rbuf.o -lz  
gcc  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test/test-regidx test/test-regidx.o regidx.o -lhts -lpthread -lz  
gcc -rdynamic  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bcftools main.o vcfindex.o tabix.o vcfstats.o vcfisec.o vcfmerge.o vcfquery.o vcffilter.o filter.o vcfsom.o vcfnorm.o vcfgtcheck.o vcfview.o vcfannotate.o vcfroh.o vcfconcat.o vcfcall.o mcall.o vcmp.o gvcf.o reheader.o convert.o vcfconvert.o tsv2vcf.o vcfcnv.o vcfhead.o HMM.o consensus.o ploidy.o bin.o hclust.o version.o regidx.o smpl_ilist.o csq.o vcfbuf.o mpileup.o bam2bcf.o bam2bcf_indel.o bam_sample.o vcfsort.o cols.o extsort.o dist.o abuf.o ccall.o em.o prob1.o kmin.o str_finder.o polysomy.o peakfit.o vcfplugin.o -lhts -lm -lz   -lgsl -lgslcblas -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1  -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1  -fstack-protector-strong -L/usr/local/lib  -L/usr/lib64/perl5/CORE -lperl -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lpthread
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.LYQ3T1
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64
++ dirname /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/bin /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/man/man1 /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools
/usr/bin/install -p bcftools /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/bin
/usr/bin/install -p misc/color-chrs.pl misc/gff2gff.py misc/guess-ploidy.py misc/plot-vcfstats misc/plot-roh.py misc/run-roh.pl misc/vcfutils.pl /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/bin
/usr/bin/install -p -m 644 doc/bcftools.1 /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/man/man1
/usr/bin/install -p plugins/*.so /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.15.1-2.fc38 --unique-debug-suffix -1.15.1-2.fc38.x86_64 --unique-debug-src-base bcftools-1.15.1-2.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/bcftools-1.15.1
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/bin/bcftools
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/GTisec.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/GTsubset.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/ad-bias.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/add-variantkey.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/af-dist.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/allele-length.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/check-ploidy.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/check-sparsity.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/color-chrs.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/contrast.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/counts.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/dosage.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/fill-AN-AC.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/fill-from-fasta.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/fill-tags.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/fixploidy.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/fixref.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/frameshifts.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/guess-ploidy.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/gvcfz.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/impute-info.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/indel-stats.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/isecGT.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/mendelian.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/missing2ref.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/parental-origin.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/prune.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/remove-overlaps.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/scatter.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/setGT.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/smpl-stats.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/split-vep.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/split.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/tag2tag.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/trio-dnm2.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/trio-stats.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/trio-switch-rate.so
extracting debug info from /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/libexec/bcftools/variantkey-hex.so
original debug info size: 6056kB, size after compression: 5264kB
/usr/bin/sepdebugcrcfix: Updated 39 CRC32s, 0 CRC32s did match.
5400 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.OoS42f
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd bcftools-1.15.1
+ grep -E '/lib(64)?/libhts\.so\.'
+ ldd bcftools
	libhts.so.3 => /lib64/libhts.so.3 (0x00007fefea16d000)
+ make test
./test/test-rbuf
Inserted 1-9 starting at offset 5:
  5  6  7  8  9  0  1  2  3
  1  2  3  4  5  6  7  8  9
4th is 4
Deleting 1-2:
  7  8  9  0  1  2  3
  3  4  5  6  7  8  9
Prepending 0-8:
  8  9  0  1  2  3  4  5  6  7
  8  7  6  5  4  3  2  1  0  3
Expanding:
  8  9 10 11 12 13 14 15 16 17
  8  7  6  5  4  3  2  1  0  3
./test/test-regidx
REF_PATH=: ./test/test.pl --plugins --exec bgzip= --exec tabix= --htsdir= ${TEST_OPTS:-}
./test/test.pl: module IO::Pty not found; skipping usage tests
test_usage:
	bcftools
test_tabix:
	tabix /tmp/rRW2naKhGo/merge.a.vcf.gz 2:3199812-3199812
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/merge.a.bcf 2:3199812-3199812
.. ok

test_tabix:
	tabix /tmp/rRW2naKhGo/merge.a.vcf.gz 1:3000151-3000151
.. ok

test_tabix:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/merge.a.bcf 1:3000151-3000151
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.vcf.gz chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20:1-2147483647
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.vcf.gz chr20
.. ok

test_index:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -H /tmp/rRW2naKhGo/large_chrom_csi_limit.bcf chr20
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/idx.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/idx.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/idx.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/idx.bcf.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -s /tmp/rRW2naKhGo/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/empty.vcf.gz
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/empty.vcf.gz.csi
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/empty.bcf
.. ok

test_vcf_idxstats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools index -n /tmp/rRW2naKhGo/empty.bcf.csi
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools stats -s - /tmp/rRW2naKhGo/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_check_merge:
	/builddir/build/BUILD/bcftools-1.15.1/misc/plot-vcfstats -m /tmp/rRW2naKhGo/check.1.chk /tmp/rRW2naKhGo/check.2.chk /tmp/rRW2naKhGo/check.3.chk /tmp/rRW2naKhGo/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools stats -s -  /tmp/rRW2naKhGo/stats.a.vcf.gz /tmp/rRW2naKhGo/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools stats -s B  /tmp/rRW2naKhGo/stats.a.vcf.gz /tmp/rRW2naKhGo/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_stats:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools stats -s -  /tmp/rRW2naKhGo/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID	'
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n =2 /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n =2 /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n =2 -i"STRLEN(REF)==2" /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n =2 -c both /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n =2 -c both /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n =2 -c any /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n =2 -c any /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -C -c any /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -C -c any /tmp/rRW2naKhGo/isec.a.vcf.gz /tmp/rRW2naKhGo/isec.b.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec --no-version   -T /tmp/rRW2naKhGo/isec.tab.gz /tmp/rRW2naKhGo/isec.a.vcf.gz
.. ok

test_vcf_isec2:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob  -T /tmp/rRW2naKhGo/isec.tab.gz /tmp/rRW2naKhGo/isec.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/rRW2naKhGo/isec-miss.1.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/rRW2naKhGo/isec-miss.1.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -R /builddir/build/BUILD/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/rRW2naKhGo/isec-miss.1.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -R /builddir/build/BUILD/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/rRW2naKhGo/isec-miss.1.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.1.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/rRW2naKhGo/isec-miss.2.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/rRW2naKhGo/isec-miss.2.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -R /builddir/build/BUILD/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/rRW2naKhGo/isec-miss.2.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.3.vcf.gz
.. ok

test_vcf_isec:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools isec -Ob -R /builddir/build/BUILD/bcftools-1.15.1/test/isec-miss.1.regs.txt -n +1 /tmp/rRW2naKhGo/isec-miss.2.1.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.2.vcf.gz /tmp/rRW2naKhGo/isec-miss.2.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AF:join /tmp/rRW2naKhGo/merge.join.a.vcf.gz /tmp/rRW2naKhGo/merge.join.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AF:join /tmp/rRW2naKhGo/merge.join.a.vcf.gz /tmp/rRW2naKhGo/merge.join.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AF:join /tmp/rRW2naKhGo/merge.join.a.bcf /tmp/rRW2naKhGo/merge.join.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AF:join /tmp/rRW2naKhGo/merge.join.a.bcf /tmp/rRW2naKhGo/merge.join.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 1 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 1 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 1 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 1 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 2 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 2 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 2 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 2 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 3 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 3 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 3 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 3 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 4 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 4 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 4 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 4 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 5 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 5 /tmp/rRW2naKhGo/merge.LPL.a.vcf.gz /tmp/rRW2naKhGo/merge.LPL.b.vcf.gz /tmp/rRW2naKhGo/merge.LPL.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -L 5 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -L 5 /tmp/rRW2naKhGo/merge.LPL.a.bcf /tmp/rRW2naKhGo/merge.LPL.b.bcf /tmp/rRW2naKhGo/merge.LPL.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -Fx /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -Fx /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -Fx /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -Fx /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -0 /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -0 /tmp/rRW2naKhGo/merge.a.vcf.gz /tmp/rRW2naKhGo/merge.b.vcf.gz /tmp/rRW2naKhGo/merge.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -0 /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -0 /tmp/rRW2naKhGo/merge.a.bcf /tmp/rRW2naKhGo/merge.b.bcf /tmp/rRW2naKhGo/merge.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m none /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m none /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m none /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m none /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m both /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m both /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m both /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m both /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m all /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m all /tmp/rRW2naKhGo/merge.2.a.vcf.gz /tmp/rRW2naKhGo/merge.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m all /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m all /tmp/rRW2naKhGo/merge.2.a.bcf /tmp/rRW2naKhGo/merge.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/rRW2naKhGo/merge.3.a.vcf.gz /tmp/rRW2naKhGo/merge.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/rRW2naKhGo/merge.3.a.vcf.gz /tmp/rRW2naKhGo/merge.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/rRW2naKhGo/merge.3.a.bcf /tmp/rRW2naKhGo/merge.3.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/rRW2naKhGo/merge.3.a.bcf /tmp/rRW2naKhGo/merge.3.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m id /tmp/rRW2naKhGo/merge.4.a.vcf.gz /tmp/rRW2naKhGo/merge.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m id /tmp/rRW2naKhGo/merge.4.a.vcf.gz /tmp/rRW2naKhGo/merge.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples -m id /tmp/rRW2naKhGo/merge.4.a.bcf /tmp/rRW2naKhGo/merge.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples -m id /tmp/rRW2naKhGo/merge.4.a.bcf /tmp/rRW2naKhGo/merge.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/gvcf.merge.1.vcf.gz /tmp/rRW2naKhGo/gvcf.merge.2.vcf.gz /tmp/rRW2naKhGo/gvcf.merge.3.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/gvcf.merge.1.vcf.gz /tmp/rRW2naKhGo/gvcf.merge.2.vcf.gz /tmp/rRW2naKhGo/gvcf.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/gvcf.merge.1.bcf /tmp/rRW2naKhGo/gvcf.merge.2.bcf /tmp/rRW2naKhGo/gvcf.merge.3.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/gvcf.merge.1.bcf /tmp/rRW2naKhGo/gvcf.merge.2.bcf /tmp/rRW2naKhGo/gvcf.merge.3.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.2.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.2.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.2.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.2.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.2.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.2.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - -i SRC:join /tmp/rRW2naKhGo/merge.gvcf.3.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.3.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - -i SRC:join /tmp/rRW2naKhGo/merge.gvcf.3.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.3.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.4.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.4.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.4.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.4.a.bcf /tmp/rRW2naKhGo/merge.gvcf.4.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.4.a.bcf /tmp/rRW2naKhGo/merge.gvcf.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.5.a.vcf.gz /tmp/rRW2naKhGo/merge.5.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.5.a.vcf.gz /tmp/rRW2naKhGo/merge.5.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.5.a.bcf /tmp/rRW2naKhGo/merge.5.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.5.a.bcf /tmp/rRW2naKhGo/merge.5.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.6.a.vcf.gz /tmp/rRW2naKhGo/merge.6.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.6.a.vcf.gz /tmp/rRW2naKhGo/merge.6.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.6.a.bcf /tmp/rRW2naKhGo/merge.6.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.6.a.bcf /tmp/rRW2naKhGo/merge.6.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.7.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.7.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.7.a.bcf /tmp/rRW2naKhGo/merge.gvcf.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.7.a.bcf /tmp/rRW2naKhGo/merge.gvcf.7.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.8.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.8.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf - /tmp/rRW2naKhGo/merge.gvcf.8.a.bcf /tmp/rRW2naKhGo/merge.gvcf.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf - /tmp/rRW2naKhGo/merge.gvcf.8.a.bcf /tmp/rRW2naKhGo/merge.gvcf.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.7.a.vcf.gz /tmp/rRW2naKhGo/merge.7.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.7.a.vcf.gz /tmp/rRW2naKhGo/merge.7.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --force-samples /tmp/rRW2naKhGo/merge.7.a.bcf /tmp/rRW2naKhGo/merge.7.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --force-samples /tmp/rRW2naKhGo/merge.7.a.bcf /tmp/rRW2naKhGo/merge.7.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf /tmp/rRW2naKhGo/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf /tmp/rRW2naKhGo/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9e.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9c.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9d.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.9e.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf /tmp/rRW2naKhGo/merge.gvcf.9e.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --gvcf /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa -r 22:21-23 /tmp/rRW2naKhGo/merge.gvcf.9a.bcf /tmp/rRW2naKhGo/merge.gvcf.9b.bcf /tmp/rRW2naKhGo/merge.gvcf.9c.bcf /tmp/rRW2naKhGo/merge.gvcf.9d.bcf /tmp/rRW2naKhGo/merge.gvcf.9e.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.b.vcf.gz /tmp/rRW2naKhGo/merge.gvcf.10.a.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -g /builddir/build/BUILD/bcftools-1.15.1/test/merge.gvcf.10.fa -m none /tmp/rRW2naKhGo/merge.gvcf.10.b.bcf /tmp/rRW2naKhGo/merge.gvcf.10.a.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.noidx.a.vcf.gz /tmp/rRW2naKhGo/merge.noidx.b.vcf.gz /tmp/rRW2naKhGo/merge.noidx.c.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.noidx.a.vcf.gz /tmp/rRW2naKhGo/merge.noidx.b.vcf.gz /tmp/rRW2naKhGo/merge.noidx.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.noidx.a.bcf /tmp/rRW2naKhGo/merge.noidx.b.bcf /tmp/rRW2naKhGo/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.noidx.a.bcf /tmp/rRW2naKhGo/merge.noidx.b.bcf /tmp/rRW2naKhGo/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --no-index /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.c.vcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --no-index /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.a.vcf /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.b.vcf /builddir/build/BUILD/bcftools-1.15.1/test/merge.noidx.c.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version --no-index /tmp/rRW2naKhGo/merge.noidx.a.bcf /tmp/rRW2naKhGo/merge.noidx.b.bcf /tmp/rRW2naKhGo/merge.noidx.c.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob --no-index /tmp/rRW2naKhGo/merge.noidx.a.bcf /tmp/rRW2naKhGo/merge.noidx.b.bcf /tmp/rRW2naKhGo/merge.noidx.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.8.a.vcf.gz /tmp/rRW2naKhGo/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.8.a.vcf.gz /tmp/rRW2naKhGo/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.8.a.bcf /tmp/rRW2naKhGo/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.8.a.bcf /tmp/rRW2naKhGo/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.8.a.vcf.gz /tmp/rRW2naKhGo/merge.8.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.8.a.vcf.gz /tmp/rRW2naKhGo/merge.8.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.8.a.bcf /tmp/rRW2naKhGo/merge.8.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.8.a.bcf /tmp/rRW2naKhGo/merge.8.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.9.a.vcf.gz /tmp/rRW2naKhGo/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.9.a.vcf.gz /tmp/rRW2naKhGo/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version  /tmp/rRW2naKhGo/merge.9.a.bcf /tmp/rRW2naKhGo/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob  /tmp/rRW2naKhGo/merge.9.a.bcf /tmp/rRW2naKhGo/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.9.a.vcf.gz /tmp/rRW2naKhGo/merge.9.b.vcf.gz
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.9.a.vcf.gz /tmp/rRW2naKhGo/merge.9.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge --no-version -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.9.a.bcf /tmp/rRW2naKhGo/merge.9.b.bcf
.. ok

test_vcf_merge:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools merge -Ob -i AN:sum,AC:sum /tmp/rRW2naKhGo/merge.9.a.bcf /tmp/rRW2naKhGo/merge.9.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/rRW2naKhGo/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/rRW2naKhGo/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/rRW2naKhGo/query.string.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.string.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%RSX\t%VKX\n' /tmp/rRW2naKhGo/query.variantkey.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.variantkey.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%RSX\t%VKX\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XRI\n' -i'XRI[*]>1111'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XRF\n' -i'XRF[*]=2e6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[2]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XGS\n' -i'XGS[*]~"H"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/rRW2naKhGo/view.vectors.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.vectors.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/rRW2naKhGo/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/rRW2naKhGo/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/rRW2naKhGo/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/rRW2naKhGo/query.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/rRW2naKhGo/query.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IINT="."'  -f'%POS %IINT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IINT!="."' -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IINT="."'  -f'%POS %IINT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IINT="."'  -f'%POS %IINT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'IFLT="."'  -f'%POS %IFLT\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'ISTR="."'  -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/rRW2naKhGo/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/rRW2naKhGo/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/rRW2naKhGo/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/rRW2naKhGo/filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%LINE' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%LINE'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/rRW2naKhGo/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/rRW2naKhGo/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/rRW2naKhGo/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/rRW2naKhGo/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/rRW2naKhGo/query.filter-type.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter-type.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/rRW2naKhGo/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/rRW2naKhGo/filter-missing-floats.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter-missing-floats.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/rRW2naKhGo/missing.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/rRW2naKhGo/query.filter.2.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/rRW2naKhGo/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/rRW2naKhGo/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 |  FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 &  FMT/GQ=589'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/rRW2naKhGo/view.filter.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.filter.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/rRW2naKhGo/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"' /tmp/rRW2naKhGo/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" &  GT~"2"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/rRW2naKhGo/query.filter.3.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/rRW2naKhGo/filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]\n' -i'AD[:0]+AD[:1] > 12'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/rRW2naKhGo/query.filter.4.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.15.1/test/query.56.out' /tmp/rRW2naKhGo/view.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/view.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i 'ID=@/builddir/build/BUILD/bcftools-1.15.1/test/query.56.out'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/rRW2naKhGo/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/rRW2naKhGo/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/rRW2naKhGo/query.filter.5.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.5.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/rRW2naKhGo/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/rRW2naKhGo/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/rRW2naKhGo/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/rRW2naKhGo/query.negative.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.negative.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/rRW2naKhGo/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/rRW2naKhGo/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/rRW2naKhGo/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/rRW2naKhGo/query.filter.11.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0' /tmp/rRW2naKhGo/query.pbinom.1.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.pbinom.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS %SAMPLE %GT %AD %PBINOM(AD)\n]' -i'phred(binom(FMT/AD))>=0'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/rRW2naKhGo/query.filter.6.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.6.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/rRW2naKhGo/query.filter.7.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.7.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/rRW2naKhGo/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/rRW2naKhGo/query.filter.8.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.8.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/rRW2naKhGo/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/rRW2naKhGo/query.filter.9.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS  %SAMPLE  %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/rRW2naKhGo/query.filter.13.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.13.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/rRW2naKhGo/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS  %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/rRW2naKhGo/query.filter.10.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.10.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS  %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/rRW2naKhGo/query.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/rRW2naKhGo/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/rRW2naKhGo/query.filter.12.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.12.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S ^/builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S ^/builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.11.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f "[%SAMPLE %GT\n]" -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.txt /tmp/rRW2naKhGo/query.smpl.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.smpl.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l -S /builddir/build/BUILD/bcftools-1.15.1/test/query.smpl.txt
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/rRW2naKhGo/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID~"s12"'
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/rRW2naKhGo/query.filter.id.vcf.gz
.. ok

test_vcf_query:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/query.filter.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%ID\n' -i'ID="rs123"'
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -cx -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -cx -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/rRW2naKhGo/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/rRW2naKhGo/norm.split.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/rRW2naKhGo/norm.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/rRW2naKhGo/norm.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- --force /tmp/rRW2naKhGo/norm.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- --force /tmp/rRW2naKhGo/norm.split.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- /tmp/rRW2naKhGo/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- /tmp/rRW2naKhGo/norm.split.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- --keep-sum AD /tmp/rRW2naKhGo/norm.split.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- --keep-sum AD /tmp/rRW2naKhGo/norm.split.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.split.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.split.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/rRW2naKhGo/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/rRW2naKhGo/norm.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/rRW2naKhGo/norm.merge.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/rRW2naKhGo/norm.merge.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m+ /tmp/rRW2naKhGo/norm.merge.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m+ /tmp/rRW2naKhGo/norm.merge.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m+ -s /tmp/rRW2naKhGo/norm.merge.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m+ -s /tmp/rRW2naKhGo/norm.merge.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -Nc s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.setref.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -Nc s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.setref.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.telomere.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa /tmp/rRW2naKhGo/norm.telomere.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d snps /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d snps /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d indels /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d indels /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d both /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d both /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d all /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d all /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d none /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d none /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d exact /tmp/rRW2naKhGo/norm.rmdup.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d exact /tmp/rRW2naKhGo/norm.rmdup.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d none /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d none /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d exact /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d exact /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d indels /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d indels /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d any /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d any /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d both /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d both /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -d snps /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -d snps /tmp/rRW2naKhGo/norm.rmdup.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -c s -a -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.2.fa /tmp/rRW2naKhGo/norm.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -c s -a -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.2.fa /tmp/rRW2naKhGo/norm.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -c s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.iupac.fa /tmp/rRW2naKhGo/norm.iupac.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -c s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.iupac.fa /tmp/rRW2naKhGo/norm.iupac.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -c s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.3.fa /tmp/rRW2naKhGo/norm.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -c s -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.3.fa /tmp/rRW2naKhGo/norm.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  --atomize --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  --atomize --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.1.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.1.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  --atomize --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  --atomize --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.2.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/rRW2naKhGo/atomize.split.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  --atomize --atom-overlaps . /tmp/rRW2naKhGo/atomize.split.3.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  --atomize --atom-overlaps . /tmp/rRW2naKhGo/atomize.split.3.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m +both /tmp/rRW2naKhGo/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m +both /tmp/rRW2naKhGo/norm.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm --no-version  -m +any /tmp/rRW2naKhGo/norm.4.vcf.gz
.. ok

test_vcf_norm:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools norm -Ob  -m +any /tmp/rRW2naKhGo/norm.4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -f PASS -Xks NA00003 /tmp/rRW2naKhGo/view.vcf.gz -r20,Y
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -f PASS -Xks NA00003 /tmp/rRW2naKhGo/view.vcf.gz -r20,Y | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -xs NA00003 /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -xs NA00003 /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -p /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -p /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -P /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -P /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -Hu /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -GVsnps /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -GVsnps /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -s ^NA00003 /tmp/rRW2naKhGo/view.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -s ^NA00003 /tmp/rRW2naKhGo/view.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version  /tmp/rRW2naKhGo/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob  /tmp/rRW2naKhGo/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -G /tmp/rRW2naKhGo/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -G /tmp/rRW2naKhGo/view.omitgenotypes.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -HG /tmp/rRW2naKhGo/view.omitgenotypes.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -a /tmp/rRW2naKhGo/many.alleles.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -a /tmp/rRW2naKhGo/many.alleles.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -asA /tmp/rRW2naKhGo/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -asA /tmp/rRW2naKhGo/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -asB /tmp/rRW2naKhGo/view.vectors.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -asB /tmp/rRW2naKhGo/view.vectors.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -asA /tmp/rRW2naKhGo/view.vectors.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -asA /tmp/rRW2naKhGo/view.vectors.2.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/rRW2naKhGo/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/rRW2naKhGo/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/rRW2naKhGo/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/rRW2naKhGo/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i'TXT0="text"' /tmp/rRW2naKhGo/view.filter.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1/test/view.chrs.tab /tmp/rRW2naKhGo/view.chrs.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1/test/view.chrs.tab /tmp/rRW2naKhGo/view.chrs.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -i 'POS>=3062917' /tmp/rRW2naKhGo/filter.2.vcf.gz 1:3062917-3157410
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -i 'POS>=3062917' /tmp/rRW2naKhGo/filter.2.vcf.gz 1:3062917-3157410 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/rRW2naKhGo/idx.1.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/rRW2naKhGo/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1/test/idx.2.bed /tmp/rRW2naKhGo/idx.2.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1/test/idx.3.bed /tmp/rRW2naKhGo/idx.3.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -R /builddir/build/BUILD/bcftools-1.15.1/test/idx.4.bed /tmp/rRW2naKhGo/idx.4.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -Ht 2 /tmp/rRW2naKhGo/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -Ht 3 /tmp/rRW2naKhGo/view-t.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/rRW2naKhGo/overlap.vcf.gz 
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.1.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.1.vcf     | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.1.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.2.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.2.vcf     | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.2.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.3.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.3.vcf     | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.4.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.4.vcf     | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.4.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.5.vcf -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.5.vcf     | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_64bit:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view /builddir/build/BUILD/bcftools-1.15.1/test/view64bit.5.vcf -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -C5:nonmajor /tmp/rRW2naKhGo/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -c6:nonmajor /tmp/rRW2naKhGo/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -q0.3:major /tmp/rRW2naKhGo/view.minmaxac.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/rRW2naKhGo/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/rRW2naKhGo/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/rRW2naKhGo/view.filter.annovar.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -H -a /tmp/rRW2naKhGo/view-a.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1/test/view.sites.txt /tmp/rRW2naKhGo/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1/test/view.sites.txt /tmp/rRW2naKhGo/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version -T /builddir/build/BUILD/bcftools-1.15.1/test/view.sites.txt.gz /tmp/rRW2naKhGo/view.sites.vcf.gz 
.. ok

test_vcf_view:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob -T /builddir/build/BUILD/bcftools-1.15.1/test/view.sites.txt.gz /tmp/rRW2naKhGo/view.sites.vcf.gz  | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 0 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 1 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 5 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 22 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 23 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -n 0 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -n 1 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -n 5 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_head:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools head -h 5 -n 5 < /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mg0 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mg0 /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.4.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.5.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.NA19213.NA19129.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -G /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -G /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.samples --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.hwe.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.3.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.4.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.5.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.4.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.6.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.4.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.5.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.7.tab.gz -i /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.cals.1.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.cals.1.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.cals.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.cals.2.vcf
.. ok

test_vcf_call_cAls:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mA -C alleles -T /tmp/rRW2naKhGo/mpileup.cals.2.tab.gz  /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.cals.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -cv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -cv /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ped /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -cv --ploidy-file /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.ploidy -S /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.2.samples /builddir/build/BUILD/bcftools-1.15.1/test/mpileup.c.X.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv /builddir/build/BUILD/bcftools-1.15.1/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv /builddir/build/BUILD/bcftools-1.15.1/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/call-G.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -G - --group-samples-tag AD /builddir/build/BUILD/bcftools-1.15.1/test/call-G.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.15.1/test/call-G.2.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -mv -F AN_POP,AC_POP /builddir/build/BUILD/bcftools-1.15.1/test/call-G.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -m /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -m /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.txt /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call --no-version -m -G /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf
.. ok

test_vcf_call:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools call -Ob -m -G /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.txt -a GP,GQ /builddir/build/BUILD/bcftools-1.15.1/test/call.af-fixation.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'TXT0="text"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/STR="XX"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /builddir/build/BUILD/bcftools-1.15.1/test/view.filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -mx -g2 -G2 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /builddir/build/BUILD/bcftools-1.15.1/test/filter.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'ALT="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'ALT="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%AC[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.15.1/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /builddir/build/BUILD/bcftools-1.15.1/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.15.1/test/filter.4.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /builddir/build/BUILD/bcftools-1.15.1/test/filter.4.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="A"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="A"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="RR"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="RR"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="RA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="RA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="AR"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="AR"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="AA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="AA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="aA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="aA"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="Aa"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="HOM"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="HET"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="HET"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'GT="HAP"' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%GT]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AD[:1]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AD[1:]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'FR[0:1]=11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%FR]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AD[*]="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AD[0:0]=="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'AD[0:0]!="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS[\t%AD]\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'QUAL=="."' /builddir/build/BUILD/bcftools-1.15.1/test/filter.5.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\t%QUAL\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'N_PASS(DP>32)=1' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'F_MISSING>=1/5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'F_MISSING>=0.2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.6.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%POS\n'
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.15.1/test/filter.7.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /builddir/build/BUILD/bcftools-1.15.1/test/filter.7.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.15.1/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /builddir/build/BUILD/bcftools-1.15.1/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.15.1/test/filter.9.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /builddir/build/BUILD/bcftools-1.15.1/test/filter.9.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /builddir/build/BUILD/bcftools-1.15.1/test/filter.8.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /builddir/build/BUILD/bcftools-1.15.1/test/filter.10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | grep -v ^##bcftools_
.. ok

test_vcf_filter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /builddir/build/BUILD/bcftools-1.15.1/test/filter.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools sort -m 0 /builddir/build/BUILD/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools sort -Ob -m 0 /builddir/build/BUILD/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools sort -m 1000 /builddir/build/BUILD/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_sort:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools sort -Ob -m 1000 /builddir/build/BUILD/bcftools-1.15.1/test/sort.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n'
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.15.1/test/regions.tab /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /builddir/build/BUILD/bcftools-1.15.1/test/regions.tab
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /builddir/build/BUILD/bcftools-1.15.1/test/regions.tab /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.tab.gz /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.tab.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/rRW2naKhGo/regions.tab.gz /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.bed /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.bed
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/rRW2naKhGo/regions.bed /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.bed.gz /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/regions.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/rRW2naKhGo/regions.bed.gz
.. ok

test_vcf_regions:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/rRW2naKhGo/regions.bed.gz /tmp/rRW2naKhGo/regions.vcf.gz
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,POS,-,T_STR /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate2.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate.hdr -c CHROM,FROM,TO,T_STR /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/rRW2naKhGo/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots.vcf.gz  -c STR,ID,QUAL,FILTER /tmp/rRW2naKhGo/annotate.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,FILTER,INFO,FMT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /builddir/build/BUILD/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   -x FORMAT /builddir/build/BUILD/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   -x FORMAT /builddir/build/BUILD/bcftools-1.15.1/test/annotate3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots4.vcf.gz  -c +INFO /tmp/rRW2naKhGo/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots4.vcf.gz  -c +INFO /tmp/rRW2naKhGo/annotate4.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.15.1/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots4.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /builddir/build/BUILD/bcftools-1.15.1/test/annotate4.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.15.1/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots10.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /builddir/build/BUILD/bcftools-1.15.1/test/annotate10.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.15.1/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots11.tab.gz  -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /builddir/build/BUILD/bcftools-1.15.1/test/annotate2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -x INFO -c INFO/IINT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots11.vcf.gz  -c FMT /tmp/rRW2naKhGo/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots11.vcf.gz  -c FMT /tmp/rRW2naKhGo/annotate11.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots2.vcf.gz  -c FMT/newGT:=GT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots12.vcf.gz  -c FMT/GT:=newGT /tmp/rRW2naKhGo/annotate2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots13.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /builddir/build/BUILD/bcftools-1.15.1/test/annotate13.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.15.1/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   -x FILTER/XX,INFO/XX --force /builddir/build/BUILD/bcftools-1.15.1/test/annotate14.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate15.tab.gz -h /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate15.tab.gz  -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=<ID=FOO,Number=1,Type=String,Description="Some description">' -H '##INFO=<ID=BAR,Number=1,Type=Integer,Description="Some description">' /builddir/build/BUILD/bcftools-1.15.1/test/annotate15.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   -x FILTER /builddir/build/BUILD/bcftools-1.15.1/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   -x FILTER /builddir/build/BUILD/bcftools-1.15.1/test/annotate16.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate17.1.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate17.3.tab.gz  -c CHROM,BEG,END,A,B -l A:append,B:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate17.3.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate18.1.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate18.1.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate18.2.tab.gz  -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate18.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/rRW2naKhGo/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate19.src.vcf.gz  -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/rRW2naKhGo/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/rRW2naKhGo/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate19.src.vcf.gz  -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/rRW2naKhGo/annotate19.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c  FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c  FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c +FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c +FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c -FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate20.src.vcf.gz  -c -FMT/GT /tmp/rRW2naKhGo/annotate20.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.multi.tab.gz  -c CHROM,POS,REF,ALT,ANN -l ANN:append /builddir/build/BUILD/bcftools-1.15.1/test/annotate.multi.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing-append.tab.gz  -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing-append.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.15.1/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots9.tab.gz  -c CHROM,POS,REF,ALT,+ID /builddir/build/BUILD/bcftools-1.15.1/test/annotate9.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   --rename-annots /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.txt /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   --rename-annots /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.txt /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob   -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /builddir/build/BUILD/bcftools-1.15.1/test/annotate21.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/rRW2naKhGo/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate22.vcf.gz  -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/rRW2naKhGo/annotate22.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.15.1/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate23.tab.gz  -c CHROM,POS,~ID,REF,ALT,INFO/END /builddir/build/BUILD/bcftools-1.15.1/test/annotate23.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate24.src.vcf.gz  -c XX /tmp/rRW2naKhGo/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate24.src.vcf.gz  -c XX /tmp/rRW2naKhGo/annotate24.dst.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.15.1/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate25.tab.gz  -c CHROM,POS,ID,REF,ALT,~INFO/END /builddir/build/BUILD/bcftools-1.15.1/test/annotate25.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate26.tab.gz  -c CHROM,POS,~POS /builddir/build/BUILD/bcftools-1.15.1/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate26.tab.gz  -c CHROM,POS,~POS /builddir/build/BUILD/bcftools-1.15.1/test/annotate26.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annotate.missing.tab.gz  -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /builddir/build/BUILD/bcftools-1.15.1/test/annotate.missing.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique /builddir/build/BUILD/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 /builddir/build/BUILD/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots.olap.tab.gz  -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 /builddir/build/BUILD/bcftools-1.15.1/test/annotate.olap.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots.id.vcf.gz  -c ALT /tmp/rRW2naKhGo/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots.id.vcf.gz  -c ALT /tmp/rRW2naKhGo/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -a /tmp/rRW2naKhGo/annots.id.vcf.gz  -c +ALT /tmp/rRW2naKhGo/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_annotate:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate -Ob -a /tmp/rRW2naKhGo/annots.id.vcf.gz  -c +ALT /tmp/rRW2naKhGo/annotate.id.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.2.vcf.gz -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +check-ploidy --no-version /tmp/rRW2naKhGo/checkploidy.2.bcf -- -m | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +missing2ref --no-version /tmp/rRW2naKhGo/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +missing2ref --no-version /tmp/rRW2naKhGo/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/plugin1.vcf.gz -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/plugin1.bcf -- -t . -n 0 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.vcf.gz -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.bcf -- -t q -n 0 -i 'GT~"." && FMT/DP=30 && GQ=150' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt]="het"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.2.vcf.gz -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.2.bcf -- -t q -n . -i 'GT[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt]="het" & binom(AD[@/builddir/build/BUILD/bcftools-1.15.1/test/setGT.samples.txt])<0.1' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n pM | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n pm | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n c:1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n c:"1|1" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n c:"m|M" | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.vcf.gz -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.3.bcf -- -t a -n c:0/1/1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.4.bcf -- -t q -n . -e 'FMT/DP>90' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.4.vcf.gz -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +setGT --no-version /tmp/rRW2naKhGo/setGT.4.bcf -- -t q -n . -e 'FMT/DP>100' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-AN-AC --no-version /tmp/rRW2naKhGo/plugin1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-AN-AC --no-version /tmp/rRW2naKhGo/plugin1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.vcf.gz -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.bcf -- -t PL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.vcf.gz -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.bcf -- -t GL | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.vcf.gz -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +dosage /tmp/rRW2naKhGo/dosage.bcf -- -t GT | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixploidy --no-version /tmp/rRW2naKhGo/fixploidy.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.15.1/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixploidy --no-version /tmp/rRW2naKhGo/fixploidy.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1/test/fixploidy.samples -p /builddir/build/BUILD/bcftools-1.15.1/test/fixploidy.ploidy | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +guess-ploidy /tmp/rRW2naKhGo/view.PL.vcf.gz -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +guess-ploidy /tmp/rRW2naKhGo/view.PL.bcf -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +guess-ploidy /tmp/rRW2naKhGo/view.GL.vcf.gz -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +guess-ploidy /tmp/rRW2naKhGo/view.GL.bcf -vrX | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/rRW2naKhGo/view.GL.vcf.gz -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/rRW2naKhGo/view.GL.bcf -- -r --gl-to-pl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/rRW2naKhGo/view.GP.vcf.gz -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +tag2tag --no-version /tmp/rRW2naKhGo/view.GP.bcf -- -r --gp-to-gt -t 0.2 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +add-variantkey /tmp/rRW2naKhGo/query.variantkey.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +add-variantkey /tmp/rRW2naKhGo/query.variantkey.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +variantkey-hex /tmp/rRW2naKhGo/query.variantkey.vcf.gz test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +variantkey-hex /tmp/rRW2naKhGo/query.variantkey.bcf test/ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +allele-length /tmp/rRW2naKhGo/query.nucleotide.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +allele-length /tmp/rRW2naKhGo/query.nucleotide.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/merge.a.vcf.gz -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/merge.a.bcf -- -t AN,AC,AC_Hom,AC_Het,AC_Hemi | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.bcf -- -t AC,AN,AF,MAF,NS | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -t AC -S /builddir/build/BUILD/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.bcf -- -t AC -S /builddir/build/BUILD/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/view.bcf -- -t "DP:1=int(sum(FORMAT/DP))" -S /builddir/build/BUILD/bcftools-1.15.1/test/fill-tags.3.smpl | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/many-alts.vcf.gz -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/many-alts.bcf -- -t AN,AC | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hemi.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hemi.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hemi.vcf.gz -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hemi.bcf -- -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hwe.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hwe.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hwe.vcf.gz -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-hwe.bcf -- -t 'XX:1=F_PASS(GT="alt")' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AN0.vcf.gz -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AN0.bcf -- -t all,END,TYPE,F_MISSING | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-VAF.vcf.gz -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-VAF.bcf -- -t VAF,VAF1 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.vcf.gz -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.bcf -- -t 'INFO/DP:1=int(sum(INFO/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.vcf.gz -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.bcf -- -t 'FORMAT/DP:1=int(smpl_sum(FMT/AD))' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.vcf.gz -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-tags --no-version /tmp/rRW2naKhGo/fill-tags-AD.bcf -- -t 'XX=N_PASS(FMT/AD[:0]<=10)','YY=N_PASS(FMT/AD[:0]>10)' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -H | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -Hm | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -Hmv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -Hv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -m | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -mv | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.vcf.gz -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTisec /tmp/rRW2naKhGo/view.bcf -- -v | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-switch-rate /tmp/rRW2naKhGo/trio.vcf.gz -- -p /builddir/build/BUILD/bcftools-1.15.1/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-switch-rate /tmp/rRW2naKhGo/trio.bcf -- -p /builddir/build/BUILD/bcftools-1.15.1/test/trio.ped | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-stats /tmp/rRW2naKhGo/trio-stats.vcf.gz -a 1 -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-stats /tmp/rRW2naKhGo/trio-stats.bcf -a 1 -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-stats /tmp/rRW2naKhGo/trio-stats.vcf.gz -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-stats /tmp/rRW2naKhGo/trio-stats.bcf -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped -d mendel-errors,transmitted | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +smpl-stats /tmp/rRW2naKhGo/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +smpl-stats /tmp/rRW2naKhGo/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.vcf.gz | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.bcf | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.vcf.gz  -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +indel-stats /tmp/rRW2naKhGo/indel-stats.bcf  -p /builddir/build/BUILD/bcftools-1.15.1/test/trio-stats.2.ped | grep -v ^CMD | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.2.vcf.gz -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.2.bcf -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.2.vcf.gz --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +ad-bias /tmp/rRW2naKhGo/ad-bias.2.bcf --no-version -- -s /builddir/build/BUILD/bcftools-1.15.1/test/ad-bias.samples -c | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +af-dist /tmp/rRW2naKhGo/af-dist.vcf.gz  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +af-dist /tmp/rRW2naKhGo/af-dist.bcf  | grep -v bcftools | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -i /tmp/rRW2naKhGo/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -i /tmp/rRW2naKhGo/fixref.2b.vcf.gz | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.3.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.3.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/fixref.3.fa -m top | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m ref-alt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m flip | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fixref /tmp/rRW2naKhGo/fixref.2a.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -m flip-all | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.15.1/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/aa.fa -c AA -h /builddir/build/BUILD/bcftools-1.15.1/test/aa.hdr -i 'TYPE="snp"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/aa.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/aa.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/aa.fa -c REF -N | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/ref.vcf.gz -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +fill-from-fasta /tmp/rRW2naKhGo/ref.bcf -- -f /builddir/build/BUILD/bcftools-1.15.1/test/norm.fa -c REF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.bcf -- -s NA00001 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.bcf -- -s NA00001,NA00002 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.vcf.gz -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +GTsubset --no-version /tmp/rRW2naKhGo/view.bcf -- -s NA00001,NA00002,NA00003 | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.vcf.gz -t mom1,dad1,child1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.bcf -t mom1,dad1,child1 -md | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.vcf.gz -t mom1,dad1,child1 -m+ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.bcf -t mom1,dad1,child1 -m+ | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.vcf.gz -t mom1,dad1,child1 -mx | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.bcf -t mom1,dad1,child1 -mx | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.vcf.gz -t mom1,dad1,child1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.bcf -t mom1,dad1,child1 -ma | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.vcf.gz -t mom1,dad1,child1 -mu | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +mendelian /tmp/rRW2naKhGo/mendelian.bcf -t mom1,dad1,child1 -mu | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 a,b -1 c | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.vcf.gz -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.15.1/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.15.1/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.bcf -a PASSOC,FASSOC,NOVELAL,NOVELGT -0 /builddir/build/BUILD/bcftools-1.15.1/test/contrast0.txt -1 /builddir/build/BUILD/bcftools-1.15.1/test/contrast1.txt | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.vcf.gz -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.bcf -a NASSOC -0 a,b,c -1 d --force-samples | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.1.vcf.gz -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.1.bcf -a NOVELAL,NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.1.vcf.gz -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +contrast /tmp/rRW2naKhGo/contrast.1.bcf -a NOVELGT -0 A -1 B | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.1.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.1.bcf -p proband,father,mother --ppl --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.2.vcf.gz -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.2.bcf -p proband,father,mother --ppl --dnm-tag DNM:log --force-AD | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.4.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.5.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.5.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.5.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.6.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.6.vcf.gz -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.6.bcf -p proband,father,mother           --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\t[\t%VA]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.7.bcf -p proband,father,mother --use-DNG --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.7.vcf.gz -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.7.bcf -p proband,father,mother        --dnm-tag DNM:log | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.8.vcf.gz -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.8.bcf -p proband,father,mother  | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\t[\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.9.vcf.gz -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.9.bcf -p 1X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.9.vcf.gz -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.9.bcf -p 2X:proband,father,mother --use-NAIVE | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.10.vcf.gz -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +trio-dnm2 /tmp/rRW2naKhGo/trio-dnm/trio-dnm.10.bcf -p proband,father,mother --with-pAD | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[\t%DNM][\t%VAF]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.vcf.gz -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.bcf -g 'PASS:GQ>10; FLT:-' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP][\t%GQ][\t%RGQ]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.2.vcf.gz -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +gvcfz /tmp/rRW2naKhGo/gvcfz.2.bcf -g 'PASS:GT!="alt"' -a | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%FILTER\t%END[\t%GT][\t%DP]\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +remove-overlaps /tmp/rRW2naKhGo/remove-overlaps.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +remove-overlaps /tmp/rRW2naKhGo/remove-overlaps.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +remove-overlaps /tmp/rRW2naKhGo/remove-overlaps.vcf.gz -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +remove-overlaps /tmp/rRW2naKhGo/remove-overlaps.bcf -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -c Consequence -s worst:missense+ | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' -i'Consequence!="."' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -s worst:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -s primary:missense+ -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -s primary:missense+ -f'%POS\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.2.vcf.gz -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.2.bcf -s worst -f'%POS\t%AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.2.vcf.gz -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.2.bcf -s worst -f'%POS\t%INFO/AF\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.3.vcf.gz -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.3.bcf -s worst -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.3.vcf.gz -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.3.bcf -s worst -f'[%POS\t%SAMPLE\t%GT\t%Consequence\n]' -i'GT="alt"' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -t 1:14464 -f '%POS\t%CANONICAL\t%Consequence\n' -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -t 1:14464 -f '%POS\t%CSQ\n' -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.4.vcf.gz -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.4.bcf -f '%POS\t%BCSQ\n' -a BCSQ -A tab -d | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -c gnomAD_NFE_AF:real,ALLELE_NUM:int | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.vcf.gz -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.bcf -c gnomAD_NFE_AF,ALLELE_NUM          | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%gnomAD_NFE_AF\t%ALLELE_NUM\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.5.vcf.gz -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.5.bcf -s :synonymous    -c Consequence | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.5.vcf.gz -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.5.bcf -s :synonymous -x -c Consequence | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%Consequence\n' | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.vcf.gz -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.bcf -c SAS_AF | grep ID=SAS_AF | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.vcf.gz -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.bcf -c - | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.vcf.gz -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.6.bcf -c - -s worst | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.7.vcf.gz --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.7.bcf --annotation 'ANN' -c IMPACT -i 'INFO/IMPACT[*] ~ "MODIFIER"' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.8.vcf.gz -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.8.bcf -a BCSQ -s worst -c Consequence,amino_acid_change,BCSQ | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.8.vcf.gz -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.8.bcf -a BCSQ -s worst -f '%POS\t%Consequence\t%amino_acid_change\t%BCSQ\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.9.vcf.gz -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.9.bcf -a BCSQ -f '%CHROM\t%POS\t%REF\t%ALT\t%BCSQ\n' -d -A tab | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.9.vcf.gz -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.9.bcf -a BCSQ -f '%xPOS %xConsequence\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.10.vcf.gz -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.10.bcf -a CSQ -f '%M_CAP_pred %M_CAP_score\n' | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.10.vcf.gz -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split-vep /tmp/rRW2naKhGo/split-vep.10.bcf -a CSQ -f '%xM_CAP_pred %xM_CAP_score\n' -p x | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.vcf.gz -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.bcf -r 20:100 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.vcf.gz -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.bcf -r 20:101 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.vcf.gz -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.bcf -r 20:102 -p proband,father,mother -t del | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.vcf.gz -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.bcf -r 20:103 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.vcf.gz -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +parental-origin /tmp/rRW2naKhGo/parental-origin.bcf -r 20:104 -p proband,father,mother -t dup | grep -v ^# | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/rRW2naKhGo/prune.2.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 1 -a r2,LD,HD /tmp/rRW2naKhGo/prune.2.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5 -f MaxR2 /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2 -a r2 -m 0.5  /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 --AF-tag AF -i 'GT="alt"' /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N 1st /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N 1st /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/rRW2naKhGo/prune.1.vcf.gz  | grep -v ^##bcftools_
.. ok

test_vcf_plugin:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +prune -w 2bp -n 1 -N rand --random-seed 1 /tmp/rRW2naKhGo/prune.1.bcf  | grep -v ^##bcftools_
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.1   && cd /tmp/rRW2naKhGo/split.1.1  && for f in A1.vcf A2.vcf A3.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.2 -S /builddir/build/BUILD/bcftools-1.15.1/test/split.smpl.1.2.txt  && cd /tmp/rRW2naKhGo/split.1.2  && for f in A.vcf B.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.3 -S /builddir/build/BUILD/bcftools-1.15.1/test/split.smpl.1.3.txt  && cd /tmp/rRW2naKhGo/split.1.3  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.4 -S /builddir/build/BUILD/bcftools-1.15.1/test/split.smpl.1.3.txt -i 'GT[0]="alt"'  && cd /tmp/rRW2naKhGo/split.1.4  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.5 -S /builddir/build/BUILD/bcftools-1.15.1/test/split.smpl.1.3.txt -i 'GT="alt"'  && cd /tmp/rRW2naKhGo/split.1.5  && for f in a3.vcf b2.vcf c.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.6 -S /builddir/build/BUILD/bcftools-1.15.1/test/split.smpl.1.4.txt -i 'GT="alt"'  && cd /tmp/rRW2naKhGo/split.1.6  && for f in file1.vcf file2.vcf file3.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.1.vcf -o /tmp/rRW2naKhGo/split.1.7 -G /builddir/build/BUILD/bcftools-1.15.1/test/split.grp.1.1.txt  && cd /tmp/rRW2naKhGo/split.1.7  && for f in A.vcf A1.vcf A2.vcf B.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_split:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +split /builddir/build/BUILD/bcftools-1.15.1/test/split.2.vcf -o /tmp/rRW2naKhGo/split.2.1   && cd /tmp/rRW2naKhGo/split.2.1  && for f in A1_A1-1.vcf A1_A1-2.vcf A1_A1.vcf B1.vcf B2.vcf C.vcf; do echo $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools query -l $f; /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H $f; done
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/rRW2naKhGo/scatter.1.1 -n 3 && cd /tmp/rRW2naKhGo/scatter.1.1 && cat 0.vcf 1.vcf 2.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/rRW2naKhGo/scatter.1.2 -s 21,22 && cd /tmp/rRW2naKhGo/scatter.1.2 && cat 21.vcf 22.vcf | grep -v ^##
.. ok

test_plugin_scatter:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools +scatter /builddir/build/BUILD/bcftools-1.15.1/test/scatter.1.vcf -o /tmp/rRW2naKhGo/scatter.1.3 -s 21,22 -x X && cd /tmp/rRW2naKhGo/scatter.1.3 && cat 21.vcf 22.vcf X.vcf | grep -v ^##
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version   /tmp/rRW2naKhGo/concat.1.a.vcf.gz /tmp/rRW2naKhGo/concat.1.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob   /tmp/rRW2naKhGo/concat.1.a.vcf.gz /tmp/rRW2naKhGo/concat.1.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version   /tmp/rRW2naKhGo/concat.1.a.bcf /tmp/rRW2naKhGo/concat.1.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob   /tmp/rRW2naKhGo/concat.1.a.bcf /tmp/rRW2naKhGo/concat.1.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -a  /tmp/rRW2naKhGo/concat.2.a.vcf.gz /tmp/rRW2naKhGo/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -a  /tmp/rRW2naKhGo/concat.2.a.vcf.gz /tmp/rRW2naKhGo/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -a  /tmp/rRW2naKhGo/concat.2.a.bcf /tmp/rRW2naKhGo/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -a  /tmp/rRW2naKhGo/concat.2.a.bcf /tmp/rRW2naKhGo/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -aD  /tmp/rRW2naKhGo/concat.2.a.vcf.gz /tmp/rRW2naKhGo/concat.2.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -aD  /tmp/rRW2naKhGo/concat.2.a.vcf.gz /tmp/rRW2naKhGo/concat.2.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -aD  /tmp/rRW2naKhGo/concat.2.a.bcf /tmp/rRW2naKhGo/concat.2.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -aD  /tmp/rRW2naKhGo/concat.2.a.bcf /tmp/rRW2naKhGo/concat.2.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/rRW2naKhGo/concat.3.a.vcf.gz /tmp/rRW2naKhGo/concat.3.b.vcf.gz /tmp/rRW2naKhGo/concat.3.0.vcf.gz /tmp/rRW2naKhGo/concat.3.c.vcf.gz /tmp/rRW2naKhGo/concat.3.d.vcf.gz /tmp/rRW2naKhGo/concat.3.e.vcf.gz /tmp/rRW2naKhGo/concat.3.f.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/rRW2naKhGo/concat.3.a.vcf.gz /tmp/rRW2naKhGo/concat.3.b.vcf.gz /tmp/rRW2naKhGo/concat.3.0.vcf.gz /tmp/rRW2naKhGo/concat.3.c.vcf.gz /tmp/rRW2naKhGo/concat.3.d.vcf.gz /tmp/rRW2naKhGo/concat.3.e.vcf.gz /tmp/rRW2naKhGo/concat.3.f.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/rRW2naKhGo/concat.3.a.bcf /tmp/rRW2naKhGo/concat.3.b.bcf /tmp/rRW2naKhGo/concat.3.0.bcf /tmp/rRW2naKhGo/concat.3.c.bcf /tmp/rRW2naKhGo/concat.3.d.bcf /tmp/rRW2naKhGo/concat.3.e.bcf /tmp/rRW2naKhGo/concat.3.f.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/rRW2naKhGo/concat.3.a.bcf /tmp/rRW2naKhGo/concat.3.b.bcf /tmp/rRW2naKhGo/concat.3.0.bcf /tmp/rRW2naKhGo/concat.3.c.bcf /tmp/rRW2naKhGo/concat.3.d.bcf /tmp/rRW2naKhGo/concat.3.e.bcf /tmp/rRW2naKhGo/concat.3.f.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
Random seed for test_naive_concat: 2374328786
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --naive-force /tmp/rRW2naKhGo/naive_concat.0.bcf /tmp/rRW2naKhGo/naive_concat.1.bcf /tmp/rRW2naKhGo/naive_concat.2.bcf /tmp/rRW2naKhGo/naive_concat.3.bcf /tmp/rRW2naKhGo/naive_concat.4.bcf /tmp/rRW2naKhGo/naive_concat.5.bcf /tmp/rRW2naKhGo/naive_concat.6.bcf /tmp/rRW2naKhGo/naive_concat.7.bcf /tmp/rRW2naKhGo/naive_concat.8.bcf /tmp/rRW2naKhGo/naive_concat.9.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_naive_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --naive /tmp/rRW2naKhGo/naive_concat.0.vcf.gz /tmp/rRW2naKhGo/naive_concat.1.vcf.gz /tmp/rRW2naKhGo/naive_concat.2.vcf.gz /tmp/rRW2naKhGo/naive_concat.3.vcf.gz /tmp/rRW2naKhGo/naive_concat.4.vcf.gz /tmp/rRW2naKhGo/naive_concat.5.vcf.gz /tmp/rRW2naKhGo/naive_concat.6.vcf.gz /tmp/rRW2naKhGo/naive_concat.7.vcf.gz /tmp/rRW2naKhGo/naive_concat.8.vcf.gz /tmp/rRW2naKhGo/naive_concat.9.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view -H
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l  /tmp/rRW2naKhGo/concat.4.a.vcf.gz /tmp/rRW2naKhGo/concat.4.b.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l  /tmp/rRW2naKhGo/concat.4.a.vcf.gz /tmp/rRW2naKhGo/concat.4.b.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l  /tmp/rRW2naKhGo/concat.4.a.bcf /tmp/rRW2naKhGo/concat.4.b.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l  /tmp/rRW2naKhGo/concat.4.a.bcf /tmp/rRW2naKhGo/concat.4.b.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/rRW2naKhGo/concat.5.a.vcf.gz /tmp/rRW2naKhGo/concat.5.b.vcf.gz /tmp/rRW2naKhGo/concat.5.c.vcf.gz
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/rRW2naKhGo/concat.5.a.vcf.gz /tmp/rRW2naKhGo/concat.5.b.vcf.gz /tmp/rRW2naKhGo/concat.5.c.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l --ligate-warn  /tmp/rRW2naKhGo/concat.5.a.bcf /tmp/rRW2naKhGo/concat.5.b.bcf /tmp/rRW2naKhGo/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l --ligate-warn  /tmp/rRW2naKhGo/concat.5.a.bcf /tmp/rRW2naKhGo/concat.5.b.bcf /tmp/rRW2naKhGo/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat --no-version -l --ligate-force  /tmp/rRW2naKhGo/concat.5.a.bcf /tmp/rRW2naKhGo/concat.5.b.bcf /tmp/rRW2naKhGo/concat.5.c.bcf
.. ok

test_vcf_concat:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools concat -Ob -l --ligate-force  /tmp/rRW2naKhGo/concat.5.a.bcf /tmp/rRW2naKhGo/concat.5.b.bcf /tmp/rRW2naKhGo/concat.5.c.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples2 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples3 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/reheader.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/reheader.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -s /builddir/build/BUILD/bcftools-1.15.1/test/reheader.samples4 | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr /builddir/build/BUILD/bcftools-1.15.1/test/empty.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /builddir/build/BUILD/bcftools-1.15.1/test/empty.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr /tmp/rRW2naKhGo/empty.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/empty.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr /tmp/rRW2naKhGo/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	cat /tmp/rRW2naKhGo/empty.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.empty.hdr | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /builddir/build/BUILD/bcftools-1.15.1/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /tmp/rRW2naKhGo/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /tmp/rRW2naKhGo/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /builddir/build/BUILD/bcftools-1.15.1/test/reheader.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /tmp/rRW2naKhGo/reheader.2.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_vcf_reheader:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools reheader -h /builddir/build/BUILD/bcftools-1.15.1/test/reheader.2.hdr -f /builddir/build/BUILD/bcftools-1.15.1/test/reheader.fai /tmp/rRW2naKhGo/reheader.2.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools view --no-version
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/rRW2naKhGo/rename.map -Ov /tmp/rRW2naKhGo/annotate.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/rRW2naKhGo/rename.map -Ob /tmp/rRW2naKhGo/annotate.bcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/rRW2naKhGo/rename.map -Ov /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_rename_chrs:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools annotate --rename-chrs /tmp/rRW2naKhGo/rename.map -Ob /builddir/build/BUILD/bcftools-1.15.1/test/annotate.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%CHROM\t%POS\n'
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids --3N6 /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert  --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --3N6 -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.3N6.gen,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --vcf-ids -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -G /builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.ids.gen.rev,/builddir/build/BUILD/bcftools-1.15.1/test/convert.gs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --tag PL /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --tag PL /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --tag PL
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --vcf-ids /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --3N6 /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --3N6 /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --3N6
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --3N6 --vcf-ids /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g -,. --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --3N6 --vcf-ids /tmp/rRW2naKhGo/check.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/check.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -g .,- --3N6 --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h -,.,. /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,-,. /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,-,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,-,. --vcf-ids /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,-,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,.,- /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert -h .,.,-
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -H /builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hls2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -H /builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.legend,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hls.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --haplegendsample -,.,. /tmp/rRW2naKhGo/convert.hap-missing.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.hap-missing.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert --haplegendsample -,.,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample -,. /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample -,.
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample -,. --vcf-ids /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample -,. --vcf-ids
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample .,- /tmp/rRW2naKhGo/convert.vcf.gz
.. ok

test_vcf_convert:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample .,-
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.samples | grep -v ^##
.. ok

test_vcf_convert_hs2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --vcf-ids --hapsample2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.ids.hap,/builddir/build/BUILD/bcftools-1.15.1/test/convert.hs.gt.samples -Ou | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa /tmp/rRW2naKhGo/convert.gvcf.vcf.gz
.. ok

test_vcf_convert_gvcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools view -Ob /tmp/rRW2naKhGo/convert.gvcf.vcf.gz | /builddir/build/BUILD/bcftools-1.15.1/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /builddir/build/BUILD/bcftools-1.15.1/test/gvcf.fa | grep -v ^##bcftools
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert --no-version  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.15.1/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.23andme
.. ok

test_vcf_convert_tsv2vcf:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools convert -Ou  -c ID,CHROM,POS,AA -s SAMPLE1 -f /builddir/build/BUILD/bcftools-1.15.1/test/23andme.fa --tsv2vcf /builddir/build/BUILD/bcftools-1.15.1/test/convert.23andme | /builddir/build/BUILD/bcftools-1.15.1/bcftools view | grep -v ^##bcftools_
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa  -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa  -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab -c /tmp/rRW2naKhGo/consensus.1.chain.new >/dev/null; cat /tmp/rRW2naKhGo/consensus.1.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -H 1 -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab -c /tmp/rRW2naKhGo/consensus.2.chain.new >/dev/null; cat /tmp/rRW2naKhGo/consensus.2.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab --mask-with X -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab --mask-with lc  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -I -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.tab -c /tmp/rRW2naKhGo/consensus.3.chain.new >/dev/null; cat /tmp/rRW2naKhGo/consensus.3.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -H 1  
.. ok

test_vcf_consensus_chain:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -H 1  -c /tmp/rRW2naKhGo/consensus.4.chain.new >/dev/null; cat /tmp/rRW2naKhGo/consensus.4.chain.new
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus2.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/empty.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa -H 2 -M "?"  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus3.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa -H 2 -M "?" -p xx_  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus4.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus5.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus5.fa --haplotype LA  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus6.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus6.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus7.fa -H 2  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus7.fa -H 2pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus7.fa -H 1  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus7.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus7.fa -H 1pIu  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -a .  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -a . -i 'type="snp" || type="ref"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -a . -i 'ALT!="<DEL>"'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -a . -e 'MinDP>15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus8.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -a . -e 'MinDP<15'  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.9.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.9.1.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.10.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.9.2.fa -H A  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.11.fa -s smpl  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.11.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.11.fa -s smpl -a N  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.12.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.13.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.13.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.14.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.14.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.12.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.12.fa --mark-del - --mark-ins uc --mark-snv uc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.15.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.16.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.fa -H I  
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.17.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus2.fa -M N -m /builddir/build/BUILD/bcftools-1.15.1/test/consensus.17.bed 
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.18.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.18.fa   
.. ok

test_vcf_consensus:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools consensus /tmp/rRW2naKhGo/consensus.19.vcf.gz -f /builddir/build/BUILD/bcftools-1.15.1/test/consensus.19.fa   
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -b /tmp/rRW2naKhGo/mpileup.bam.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob -b /tmp/rRW2naKhGo/mpileup.bam.urllist | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -b /tmp/rRW2naKhGo/mpileup.cram.list --no-version | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob -b /tmp/rRW2naKhGo/mpileup.cram.urllist | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -r17:100-150 -S ^/builddir/build/BUILD/bcftools-1.15.1/test/mplp.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -S /builddir/build/BUILD/bcftools-1.15.1/test/mplp.9.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t17:100-150 -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.10.samples -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.1.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.2.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup  -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s HG00102 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -s ^HG99999 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.sam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.bam /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -G /builddir/build/BUILD/bcftools-1.15.1/test/mplp.11.rgs -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.ref.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.3.cram /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup.4.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.1.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/indel-AD.2.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.bam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -a INFO/SCR,FMT/SCR -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.cram | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_mpileup:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-SCR.fa -Ob /builddir/build/BUILD/bcftools-1.15.1/test/mpileup/mpileup-filter.sam | /builddir/build/BUILD/bcftools-1.15.1/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq.gff3 /builddir/build/BUILD/bcftools-1.15.1/test/csq.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq.chr.gff3 /builddir/build/BUILD/bcftools-1.15.1/test/csq.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq.2.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq.2.gff --ncsq 64 /builddir/build/BUILD/bcftools-1.15.1/test/csq.2.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000624631/ENST00000624631.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000624631/ENST00000624631.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000624631/ambiguous.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000593942/ENST00000593942.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000593942/ENST00000593942.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000593942/last-codon-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000580206 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf  | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/ENST00000573314.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000557788/ENST00000557788.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000557788/ENST00000557788.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000557788/long-overlap-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000545279/ENST00000545279.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000545279/ENST00000545279.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000545279/splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/ENST00000543077.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000543077/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/ENST00000542803.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000542803/splice-region.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/ENST00000536784.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000536784/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000528237/ENST00000528237.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000528237/ENST00000528237.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520868/ENST00000520868.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520868/ENST00000520868.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520868/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/ENST00000520795.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000520795/long-inside-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000519442/ENST00000519442.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000519442/ENST00000519442.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000519442/synon-splice-region-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414/ENST00000518414.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414/ENST00000518414.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/ENST00000479739.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000479739/short-cds-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000448695/ENST00000448695.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000448695/ENST00000448695.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000436063/ENST00000436063.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000436063/ENST00000436063.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000436063/insert-before-utr.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/snps.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/ENST00000423372.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000423372/insert3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000422159 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf  | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/start-stop-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/ENST00000420670.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420670/segfault.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420190/ENST00000420190.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420190/ENST00000420190.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000420190/abort-in-csq-push.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000413103/ENST00000413103.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000413103/ENST00000413103.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000413103/long-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009/ENST00000410009.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009/ENST00000410009.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009/frameshift.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000410009 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000409523/ENST00000409523.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000409523/ENST00000409523.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000409523/long-overlapping-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000400151/ENST00000400151.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000400151/ENST00000400151.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000400151/long-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000390520/ENST00000390520.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000390520/ENST00000390520.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000390520/deletion-overlap.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000382647/ENST00000382647.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000382647/ENST00000382647.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000381157/ENST00000381157.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000381157/ENST00000381157.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000381157/haploid-diploid.vcf | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000379416 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf       | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf                 | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/ENST00000378322.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000378322/end-overlap-tscript.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000375992/ENST00000375992.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000375992/ENST00000375992.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/ENST00000373833.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000373833/boundary-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801/ENST00000368801.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801/ENST00000368801.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801/compound-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801.2/ENST00000368801.2.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000368801.2/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000357367/ENST00000357367.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000357367/ENST00000357367.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000357367/stop-retained.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame3.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame2.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/ENST00000341065.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000341065/frame1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/ENST00000329454.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000329454/boundary-deletion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/ENST00000318249.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249.2/ENST00000318249.2.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/ENST00000303039.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000303039/not-a-stop.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000301246/ENST00000301246.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000301246/ENST00000301246.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000301246/15bp-insert.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/ENST00000295641.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000295641/not-a-start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/ENST00000294661.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000294661/non-coding-boundary.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000285021/ENST00000285021.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000285021/ENST00000285021.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000271583/ENST00000271583.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000271583/ENST00000271583.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000271583/splice-acceptor.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000269081/ENST00000269081.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000269081/ENST00000269081.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000263103-INS/insertions.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000256452/ENST00000256452.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000256452/ENST00000256452.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000256452/intron.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000230048/ENST00000230048.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000230048/ENST00000230048.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000230048/start-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000227471/ENST00000227471.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000227471/ENST00000227471.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/start-lost.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/ENST00000218032.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000218032/start-lost-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENST00000000000 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf  | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSMUST00000133836 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSMUST00000121418 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSG00000173376/ENSG00000173376.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSG00000173376/ENSG00000173376.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/ENSG00000173376/synon.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	cd /builddir/build/BUILD/bcftools-1.15.1/test/csq/EMN908947 && /builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0003/EDUMMY0003.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0003/EDUMMY0003.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0003/long-del.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0002/EDUMMY0002.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0002/EDUMMY0002.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0002/boundaries.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_csq_real:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools csq -l -f /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.fa -g /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/EDUMMY0001.gff /builddir/build/BUILD/bcftools-1.15.1/test/csq/EDUMMY0001/starts-with-1.vcf | /builddir/build/BUILD/bcftools-1.15.1/test/csq/sort-csq | /builddir/build/BUILD/bcftools-1.15.1/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n'
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.tab.gz| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz -Or -G30 --AF-file /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.tab.gz --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^#
.. ok

test_roh:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools roh /builddir/build/BUILD/bcftools-1.15.1/test/roh.1.vcf.gz     -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^#
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,GT /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,PL /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,GT /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,PL /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -p s1,s1 /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 /tmp/rRW2naKhGo/gtcheck.2.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0  /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1/test/gtcheck.3.pairs /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 --n-matches 4 /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO  | sort
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -p B,C,B,D /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,GT -H /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u GT,PL -H /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,GT -H /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -u PL,PL -H /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/rRW2naKhGo/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -e 0 -P /builddir/build/BUILD/bcftools-1.15.1/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/rRW2naKhGo/gtcheck.4.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -u GT -e 30 /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -u GT -e 300 /tmp/rRW2naKhGo/gtcheck.1.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck -u PL -e 30 /tmp/rRW2naKhGo/gtcheck.3.vcf.gz  | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck  /tmp/rRW2naKhGo/gtcheck.ntop.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck --n-matches 2 /tmp/rRW2naKhGo/gtcheck.ntop.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 
.. ok

test_gtcheck:
	/builddir/build/BUILD/bcftools-1.15.1/bcftools gtcheck  /tmp/rRW2naKhGo/gtcheck.5.vcf.gz -g /tmp/rRW2naKhGo/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time
.. ok


Number of tests:
    total   .. 1725
    passed  .. 1725
    failed  .. 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bcftools-1.15.1-2.fc38.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.UL0ERi
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcftools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/doc/bcftools
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/doc/bcftools
+ cp -pr AUTHORS /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/doc/bcftools
+ cp -pr NEWS /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/doc/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.L0VRvY
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcftools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/licenses/bcftools
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/licenses/bcftools
+ cp -pr LICENSE /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64/usr/share/licenses/bcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bcftools = 1.15.1-2.fc38 bcftools(x86-64) = 1.15.1-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl /usr/bin/python3 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libperl.so.5.36()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Conflicts: samtools < 1.0
Processing files: bcftools-debugsource-1.15.1-2.fc38.x86_64
Provides: bcftools-debugsource = 1.15.1-2.fc38 bcftools-debugsource(x86-64) = 1.15.1-2.fc38
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bcftools-debuginfo-1.15.1-2.fc38.x86_64
Provides: bcftools-debuginfo = 1.15.1-2.fc38 bcftools-debuginfo(x86-64) = 1.15.1-2.fc38 debuginfo(build-id) = 1137c0f1c5fa3623a023388b975cd315738eedef debuginfo(build-id) = 254f8d11d084c278dddf025ea62c3a843a1eefe2 debuginfo(build-id) = 2c860e43e117eeb355b7efa9e50e082f73da2477 debuginfo(build-id) = 2f46b578439c65edaac98fe191f9d40aa74a20d1 debuginfo(build-id) = 30989bd21523fdd22cefffc78bac5ea37fa3775b debuginfo(build-id) = 323e5d68cd4c30e77176433155ac3342c65786c9 debuginfo(build-id) = 4a7bc41ca3074930f54566cbbf8c4022d2f08941 debuginfo(build-id) = 4f5d50c072750a2c09714f3fc98e2d94b59816ff debuginfo(build-id) = 50d8769ee59534e1058e9ad1983abbdadcfc127e debuginfo(build-id) = 56399c243c2d70474902225055e0dc6688b99b6c debuginfo(build-id) = 5676b31326dc0ee01efc74f535d71e65f6266ffc debuginfo(build-id) = 65fecfe462fd292c2f651c4415d3b6d8d28740fa debuginfo(build-id) = 6a914fe16a24424647c4fbfbb93321e8492e249a debuginfo(build-id) = 708a790c63920b05826c2e520edb3546886e76aa debuginfo(build-id) = 70f633a85d0d04765b310e9d6cc647250842215a debuginfo(build-id) = 7cb841bfd308728e1d07149f4d607de9b7f385f5 debuginfo(build-id) = 879866f505c236e82fef1bb48c49f8004209bdae debuginfo(build-id) = 91b35a5da5ae8aca4215d636d8d7f2183674d58d debuginfo(build-id) = 996b5513fcb4f2a7d5b75c8e73cc37c012283a51 debuginfo(build-id) = a1240d05a5c8387da66d0dea5e06e10cd4588b16 debuginfo(build-id) = a58210a9f00b96e6c9b52101baaa69fe621e47bc debuginfo(build-id) = b3df518226c0b8d6dbaab22f04d49062ed817264 debuginfo(build-id) = b6bfe96879d7414532ae4ad690e40e3e57442884 debuginfo(build-id) = bdc4214e63be66226a849db8ecc09ae87a3c64a0 debuginfo(build-id) = c06ef650f57047aeeb5cc5b89726ea2563da9242 debuginfo(build-id) = c1e565f5874d9ca58bb4a0094425fe1bce6e8718 debuginfo(build-id) = cc0f4ac2fae9a26438cfa3f96672b6cf00a33f09 debuginfo(build-id) = cd4c096b41141f4292f06a5665cdc0aa87207567 debuginfo(build-id) = d553c03d72fb62aa904d78d13bf4a4ea4b6954a9 debuginfo(build-id) = d6e95bcce814c4017688fc4afd5586b9d7c0c3ac debuginfo(build-id) = e122685f14304f0e48c2df7e597c299b6381b451 debuginfo(build-id) = e16464b53c82ac2fb9ab5a923e9dd5a6b8af00d7 debuginfo(build-id) = ef70d230e5b3cfcca6a65c814fda5f8c8aeb80a0 debuginfo(build-id) = f0a7750d219369852d1085968af7259b8b1c0ca3 debuginfo(build-id) = f0e2f4da1c5636c519a9d62263fb5f2304aed50b debuginfo(build-id) = f7b185ab4e5ff891d8cf52b0cc34e9fb366f856f debuginfo(build-id) = fadab8e52d3badc1a65efc569e55098dfcc1f594 debuginfo(build-id) = fc3fd394fa505c433d6dc9fb36f8297904d31e21 debuginfo(build-id) = fe25f336cb37b328c3f11da32530557ae37d51c1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bcftools-debugsource(x86-64) = 1.15.1-2.fc38
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64
Wrote: /builddir/build/RPMS/bcftools-debugsource-1.15.1-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bcftools-debuginfo-1.15.1-2.fc38.x86_64.rpm
Wrote: /builddir/build/RPMS/bcftools-1.15.1-2.fc38.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.GugcRK
+ umask 022
+ cd /builddir/build/BUILD
+ cd bcftools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bcftools-1.15.1-2.fc38.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NNa7gp
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf bcftools-1.15.1 bcftools-1.15.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild bcftools-1.15.1-2.fc38.src.rpm
Finish: build phase for bcftools-1.15.1-2.fc38.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1667626114.328037/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/bcftools-1.15.1-2.fc38.src.rpm) Config(child) 1 minutes 29 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool