Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c109' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5015997 --chroot fedora-rawhide-x86_64 --detached Version: 0.61 PID: 114046 Logging PID: 114047 Task: {'appstream': False, 'background': True, 'build_id': 5015997, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '4f410c8f39d8431418e1e9a0f2da171666ded1fe', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-3', 'project_dirname': 'make-4.4', 'project_name': 'make-4.4', 'project_owner': 'djdelorie', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/djdelorie/make-4.4/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'djdelorie/make-4.4--djdelorie', 'source_json': {}, 'source_type': None, 'submitter': 'djdelorie', 'tags': [], 'task_id': '5015997-fedora-rawhide-x86_64', 'timeout': 108000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/djdelorie/make-4.4/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn'... Running: git checkout 4f410c8f39d8431418e1e9a0f2da171666ded1fe cmd: ['git', 'checkout', '4f410c8f39d8431418e1e9a0f2da171666ded1fe'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn rc: 0 stdout: stderr: Note: switching to '4f410c8f39d8431418e1e9a0f2da171666ded1fe'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 4f410c8 automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/djdelorie/make-4.4/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 92.0M 100 92.0M 0 0 12.2M 0 0:00:07 0:00:07 --:--:-- 6548k INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=108000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667993433.618873 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667993433.618873/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 56 MB/s | 23 MB 00:00 fedora 6.4 MB/s | 65 MB 00:10 Last metadata expiration check: 0:00:05 ago on Wed Nov 9 11:30:47 2022. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives x86_64 1.21-1.fc38 copr_base 38 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k basesystem noarch 11-14.fc37 fedora 7.0 k bash x86_64 5.2.2-2.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils x86_64 9.1-8.fc38 copr_base 1.1 M coreutils-common x86_64 9.1-8.fc38 copr_base 2.0 M crypto-policies noarch 20221003-1.gitcb1ad32.fc38 fedora 86 k curl x86_64 7.86.0-2.fc38 fedora 334 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k dbus-libs x86_64 1:1.14.4-1.fc38 fedora 156 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k expat x86_64 2.4.8-2.fc37 fedora 110 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.4 fedora 11 k fedora-release-common noarch 38-0.4 fedora 22 k fedora-release-identity-basic noarch 38-0.4 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M findutils x86_64 1:4.9.0-2.fc38 copr_base 483 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M gdbm-libs x86_64 1:1.23-2.fc38 copr_base 56 k glib2 x86_64 2.74.1-2.fc38 fedora 2.7 M glibc x86_64 2.36.9000-11.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-11.fc38 fedora 301 k glibc-minimal-langpack x86_64 2.36.9000-11.fc38 fedora 22 k gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnupg2 x86_64 2.3.8-1.fc38 copr_base 2.5 M gnutls x86_64 3.7.8-9.fc38 fedora 1.1 M gpgme x86_64 1.17.0-4.fc37 fedora 210 k grep x86_64 3.8-1.fc38 copr_base 282 k ima-evm-utils x86_64 1.4-6.fc37 fedora 63 k json-c x86_64 0.16-3.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-5.fc38 copr_base 32 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libassuan x86_64 2.5.5-5.fc37 fedora 67 k libattr x86_64 2.5.1-5.fc38 copr_base 18 k libb2 x86_64 0.98.1-7.fc38 copr_base 25 k libblkid x86_64 2.38.1-2.fc38 copr_base 107 k libbrotli x86_64 1.0.9-9.fc37 fedora 315 k libcap x86_64 2.48-5.fc38 copr_base 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcomps x86_64 0.1.18-4.fc38 copr_base 77 k libcurl x86_64 7.86.0-2.fc38 fedora 305 k libdnf x86_64 0.68.0-1.fc38 fedora 673 k libevent x86_64 2.1.12-7.fc38 copr_base 259 k libffi x86_64 3.4.2-9.fc38 copr_base 38 k libfsverity x86_64 1.4-8.fc38 copr_base 20 k libgcc x86_64 12.2.1-3.fc38 fedora 108 k libgcrypt x86_64 1.10.1-4.fc37 fedora 512 k libgomp x86_64 12.2.1-3.fc38 fedora 295 k libgpg-error x86_64 1.46-1.fc38 fedora 227 k libidn2 x86_64 2.3.4-1.fc38 copr_base 154 k libksba x86_64 1.6.2-1.fc38 fedora 158 k libmodulemd x86_64 2.14.0-4.fc37 fedora 234 k libmount x86_64 2.38.1-2.fc38 copr_base 136 k libnghttp2 x86_64 1.50.0-1.fc38 copr_base 75 k libnsl2 x86_64 2.0.0-4.fc38 copr_base 31 k libpsl x86_64 0.21.1-6.fc38 copr_base 64 k librepo x86_64 1.14.4-1.fc38 fedora 94 k libreport-filesystem noarch 2.17.6-1.fc38 fedora 14 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc38 copr_base 322 k libsigsegv x86_64 2.14-3.fc38 copr_base 27 k libsmartcols x86_64 2.38.1-2.fc38 copr_base 65 k libsolv x86_64 0.7.22-3.fc37 fedora 405 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 12.2.1-3.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc38 copr_base 94 k libunistring x86_64 1.0-2.fc38 copr_base 549 k libuuid x86_64 2.38.1-2.fc38 copr_base 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.30-1.fc38 copr_base 118 k libxml2 x86_64 2.10.3-2.fc38 fedora 705 k libyaml x86_64 0.2.5-8.fc38 copr_base 60 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-6.fc38 copr_base 132 k lz4-libs x86_64 1.9.3-5.fc38 copr_base 71 k mpdecimal x86_64 2.5.1-4.fc38 copr_base 102 k mpfr x86_64 4.1.0-10.fc38 copr_base 331 k ncurses-base noarch 6.3-3.20220501.fc38 copr_base 62 k ncurses-libs x86_64 6.3-3.20220501.fc38 copr_base 329 k nettle x86_64 3.8-2.fc38 copr_base 414 k npth x86_64 1.6-10.fc38 copr_base 25 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-6.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k pcre2 x86_64 10.40-1.fc38.1 copr_base 237 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k popt x86_64 1.19-1.fc38 copr_base 59 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-pip-wheel noarch 22.2.2-2.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.0-1.fc38 fedora 715 k python3 x86_64 3.11.0-1.fc38 fedora 27 k python3-dateutil noarch 1:2.8.2-4.fc38 copr_base 350 k python3-dbus x86_64 1.3.2-1.fc38 fedora 157 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg x86_64 1.17.0-4.fc37 fedora 298 k python3-hawkey x86_64 0.68.0-1.fc38 fedora 108 k python3-libcomps x86_64 0.1.18-4.fc38 copr_base 48 k python3-libdnf x86_64 0.68.0-1.fc38 fedora 818 k python3-libs x86_64 3.11.0-1.fc38 fedora 9.6 M python3-rpm x86_64 4.18.0-3.fc38 fedora 94 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline x86_64 8.2-2.fc38 copr_base 211 k rpm x86_64 4.18.0-3.fc38 fedora 570 k rpm-build-libs x86_64 4.18.0-3.fc38 fedora 94 k rpm-libs x86_64 4.18.0-3.fc38 fedora 320 k rpm-sign-libs x86_64 4.18.0-3.fc38 fedora 27 k sed x86_64 4.8-11.fc38 copr_base 297 k setup noarch 2.14.2-1.fc38 fedora 151 k shadow-utils x86_64 2:4.12.3-3.fc38 fedora 1.3 M sqlite-libs x86_64 3.39.4-1.fc38 copr_base 659 k systemd-libs x86_64 252-587.fc38 fedora 631 k tpm2-tss x86_64 3.2.0-3.fc38 copr_base 596 k tzdata noarch 2022f-1.fc38 fedora 715 k xz-libs x86_64 5.2.7-1.fc38 fedora 93 k zchunk-libs x86_64 1.2.3-1.fc38 fedora 51 k zlib x86_64 1.2.12-5.fc38 copr_base 94 k Transaction Summary ================================================================================ Install 136 Packages Total download size: 56 M Installed size: 196 M Downloading Packages: (1/136): alternatives-1.21-1.fc38.x86_64.rpm 850 kB/s | 38 kB 00:00 (2/136): bzip2-libs-1.0.8-12.fc38.x86_64.rpm 874 kB/s | 42 kB 00:00 (3/136): coreutils-9.1-8.fc38.x86_64.rpm 12 MB/s | 1.1 MB 00:00 (4/136): file-libs-5.42-4.fc38.x86_64.rpm 11 MB/s | 676 kB 00:00 (5/136): coreutils-common-9.1-8.fc38.x86_64.rpm 31 MB/s | 2.0 MB 00:00 (6/136): findutils-4.9.0-2.fc38.x86_64.rpm 20 MB/s | 483 kB 00:00 (7/136): gdbm-libs-1.23-2.fc38.x86_64.rpm 6.2 MB/s | 56 kB 00:00 (8/136): gnupg2-2.3.8-1.fc38.x86_64.rpm 57 MB/s | 2.5 MB 00:00 (9/136): grep-3.8-1.fc38.x86_64.rpm 6.3 MB/s | 282 kB 00:00 (10/136): keyutils-libs-1.6.1-5.fc38.x86_64.rpm 757 kB/s | 32 kB 00:00 (11/136): libattr-2.5.1-5.fc38.x86_64.rpm 2.1 MB/s | 18 kB 00:00 (12/136): libb2-0.98.1-7.fc38.x86_64.rpm 2.7 MB/s | 25 kB 00:00 (13/136): libblkid-2.38.1-2.fc38.x86_64.rpm 10 MB/s | 107 kB 00:00 (14/136): libcap-2.48-5.fc38.x86_64.rpm 7.2 MB/s | 67 kB 00:00 (15/136): libcomps-0.1.18-4.fc38.x86_64.rpm 8.3 MB/s | 77 kB 00:00 (16/136): libevent-2.1.12-7.fc38.x86_64.rpm 23 MB/s | 259 kB 00:00 (17/136): libffi-3.4.2-9.fc38.x86_64.rpm 4.1 MB/s | 38 kB 00:00 (18/136): libfsverity-1.4-8.fc38.x86_64.rpm 2.2 MB/s | 20 kB 00:00 (19/136): libidn2-2.3.4-1.fc38.x86_64.rpm 14 MB/s | 154 kB 00:00 (20/136): libmount-2.38.1-2.fc38.x86_64.rpm 11 MB/s | 136 kB 00:00 (21/136): libnghttp2-1.50.0-1.fc38.x86_64.rpm 5.4 MB/s | 75 kB 00:00 (22/136): libnsl2-2.0.0-4.fc38.x86_64.rpm 1.8 MB/s | 31 kB 00:00 (23/136): libpsl-0.21.1-6.fc38.x86_64.rpm 1.6 MB/s | 64 kB 00:00 (24/136): libsepol-3.4-3.fc38.x86_64.rpm 7.2 MB/s | 322 kB 00:00 (25/136): libsigsegv-2.14-3.fc38.x86_64.rpm 737 kB/s | 27 kB 00:00 (26/136): libsmartcols-2.38.1-2.fc38.x86_64.rpm 4.6 MB/s | 65 kB 00:00 (27/136): libunistring-1.0-2.fc38.x86_64.rpm 36 MB/s | 549 kB 00:00 (28/136): libtirpc-1.3.3-0.fc38.x86_64.rpm 5.5 MB/s | 94 kB 00:00 (29/136): libuuid-2.38.1-2.fc38.x86_64.rpm 747 kB/s | 28 kB 00:00 (30/136): libxcrypt-4.4.30-1.fc38.x86_64.rpm 3.9 MB/s | 118 kB 00:00 (31/136): libyaml-0.2.5-8.fc38.x86_64.rpm 2.1 MB/s | 60 kB 00:00 (32/136): lua-libs-5.4.4-6.fc38.x86_64.rpm 6.6 MB/s | 132 kB 00:00 (33/136): lz4-libs-1.9.3-5.fc38.x86_64.rpm 1.8 MB/s | 71 kB 00:00 (34/136): mpdecimal-2.5.1-4.fc38.x86_64.rpm 1.4 MB/s | 102 kB 00:00 (35/136): mpfr-4.1.0-10.fc38.x86_64.rpm 3.6 MB/s | 331 kB 00:00 (36/136): ncurses-base-6.3-3.20220501.fc38.noar 839 kB/s | 62 kB 00:00 (37/136): ncurses-libs-6.3-3.20220501.fc38.x86_ 4.0 MB/s | 329 kB 00:00 (38/136): nettle-3.8-2.fc38.x86_64.rpm 4.9 MB/s | 414 kB 00:00 (39/136): npth-1.6-10.fc38.x86_64.rpm 299 kB/s | 25 kB 00:00 (40/136): pcre2-10.40-1.fc38.1.x86_64.rpm 4.2 MB/s | 237 kB 00:00 (41/136): pcre2-syntax-10.40-1.fc38.1.noarch.rp 6.0 MB/s | 143 kB 00:00 (42/136): popt-1.19-1.fc38.x86_64.rpm 2.3 MB/s | 59 kB 00:00 (43/136): python3-dateutil-2.8.2-4.fc38.noarch. 14 MB/s | 350 kB 00:00 (44/136): python3-libcomps-0.1.18-4.fc38.x86_64 2.5 MB/s | 48 kB 00:00 (45/136): readline-8.2-2.fc38.x86_64.rpm 8.6 MB/s | 211 kB 00:00 (46/136): sed-4.8-11.fc38.x86_64.rpm 16 MB/s | 297 kB 00:00 (47/136): sqlite-libs-3.39.4-1.fc38.x86_64.rpm 19 MB/s | 659 kB 00:00 (48/136): tpm2-tss-3.2.0-3.fc38.x86_64.rpm 16 MB/s | 596 kB 00:00 (49/136): zlib-1.2.12-5.fc38.x86_64.rpm 3.1 MB/s | 94 kB 00:00 (50/136): basesystem-11-14.fc37.noarch.rpm 185 kB/s | 7.0 kB 00:00 (51/136): audit-libs-3.0.9-1.fc38.x86_64.rpm 1.2 MB/s | 116 kB 00:00 (52/136): crypto-policies-20221003-1.gitcb1ad32 3.2 MB/s | 86 kB 00:00 (53/136): ca-certificates-2022.2.54-5.fc37.noar 6.9 MB/s | 829 kB 00:00 (54/136): curl-7.86.0-2.fc38.x86_64.rpm 6.9 MB/s | 334 kB 00:00 (55/136): bash-5.2.2-2.fc38.x86_64.rpm 11 MB/s | 1.8 MB 00:00 (56/136): dbus-libs-1.14.4-1.fc38.x86_64.rpm 6.6 MB/s | 156 kB 00:00 (57/136): cyrus-sasl-lib-2.1.28-8.fc38.x86_64.r 25 MB/s | 792 kB 00:00 (58/136): dnf-4.14.0-1.fc38.noarch.rpm 17 MB/s | 480 kB 00:00 (59/136): dnf-data-4.14.0-1.fc38.noarch.rpm 2.1 MB/s | 43 kB 00:00 (60/136): dnf-plugins-core-4.3.1-1.fc38.noarch. 1.6 MB/s | 34 kB 00:00 (61/136): elfutils-default-yama-scope-0.188-3.f 695 kB/s | 15 kB 00:00 (62/136): elfutils-libelf-0.188-3.fc38.x86_64.r 6.3 MB/s | 196 kB 00:00 (63/136): elfutils-libs-0.188-3.fc38.x86_64.rpm 8.3 MB/s | 257 kB 00:00 (64/136): expat-2.4.8-2.fc37.x86_64.rpm 3.9 MB/s | 110 kB 00:00 (65/136): fedora-gpg-keys-38-0.3.noarch.rpm 4.7 MB/s | 125 kB 00:00 (66/136): fedora-release-38-0.4.noarch.rpm 537 kB/s | 11 kB 00:00 (67/136): fedora-release-common-38-0.4.noarch.r 1.1 MB/s | 22 kB 00:00 (68/136): fedora-release-identity-basic-38-0.4. 623 kB/s | 12 kB 00:00 (69/136): fedora-repos-38-0.3.noarch.rpm 534 kB/s | 10 kB 00:00 (70/136): fedora-repos-rawhide-38-0.3.noarch.rp 515 kB/s | 9.7 kB 00:00 (71/136): gawk-5.1.1-4.fc37.x86_64.rpm 28 MB/s | 1.0 MB 00:00 (72/136): filesystem-3.18-2.fc37.x86_64.rpm 19 MB/s | 1.1 MB 00:00 (73/136): glib2-2.74.1-2.fc38.x86_64.rpm 43 MB/s | 2.7 MB 00:00 (74/136): glibc-common-2.36.9000-11.fc38.x86_64 12 MB/s | 301 kB 00:00 (75/136): glibc-2.36.9000-11.fc38.x86_64.rpm 38 MB/s | 2.1 MB 00:00 (76/136): glibc-minimal-langpack-2.36.9000-11.f 1.1 MB/s | 22 kB 00:00 (77/136): gmp-6.2.1-3.fc37.x86_64.rpm 14 MB/s | 315 kB 00:00 (78/136): gpgme-1.17.0-4.fc37.x86_64.rpm 8.8 MB/s | 210 kB 00:00 (79/136): gnutls-3.7.8-9.fc38.x86_64.rpm 32 MB/s | 1.1 MB 00:00 (80/136): ima-evm-utils-1.4-6.fc37.x86_64.rpm 2.5 MB/s | 63 kB 00:00 (81/136): json-c-0.16-3.fc38.x86_64.rpm 2.1 MB/s | 41 kB 00:00 (82/136): libacl-2.3.1-4.fc37.x86_64.rpm 998 kB/s | 23 kB 00:00 (83/136): krb5-libs-1.19.2-11.fc37.1.x86_64.rpm 22 MB/s | 727 kB 00:00 (84/136): libarchive-3.6.1-2.fc37.x86_64.rpm 15 MB/s | 397 kB 00:00 (85/136): libassuan-2.5.5-5.fc37.x86_64.rpm 3.3 MB/s | 67 kB 00:00 (86/136): libbrotli-1.0.9-9.fc37.x86_64.rpm 14 MB/s | 315 kB 00:00 (87/136): libcap-ng-0.8.3-3.fc37.x86_64.rpm 1.7 MB/s | 33 kB 00:00 (88/136): libcom_err-1.46.5-3.fc37.x86_64.rpm 1.3 MB/s | 25 kB 00:00 (89/136): libcurl-7.86.0-2.fc38.x86_64.rpm 14 MB/s | 305 kB 00:00 (90/136): libdnf-0.68.0-1.fc38.x86_64.rpm 23 MB/s | 673 kB 00:00 (91/136): libgcc-12.2.1-3.fc38.x86_64.rpm 5.2 MB/s | 108 kB 00:00 (92/136): libgcrypt-1.10.1-4.fc37.x86_64.rpm 22 MB/s | 512 kB 00:00 (93/136): libgomp-12.2.1-3.fc38.x86_64.rpm 13 MB/s | 295 kB 00:00 (94/136): libgpg-error-1.46-1.fc38.x86_64.rpm 10 MB/s | 227 kB 00:00 (95/136): libksba-1.6.2-1.fc38.x86_64.rpm 7.8 MB/s | 158 kB 00:00 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94 kB 00:00 (125/136): python3-six-1.16.0-8.fc37.noarch.rpm 1.3 MB/s | 42 kB 00:00 (126/136): rpm-4.18.0-3.fc38.x86_64.rpm 13 MB/s | 570 kB 00:00 (127/136): rpm-build-libs-4.18.0-3.fc38.x86_64. 2.4 MB/s | 94 kB 00:00 (128/136): rpm-libs-4.18.0-3.fc38.x86_64.rpm 8.0 MB/s | 320 kB 00:00 (129/136): rpm-sign-libs-4.18.0-3.fc38.x86_64.r 763 kB/s | 27 kB 00:00 (130/136): python3-libs-3.11.0-1.fc38.x86_64.rp 65 MB/s | 9.6 MB 00:00 (131/136): setup-2.14.2-1.fc38.noarch.rpm 5.2 MB/s | 151 kB 00:00 (132/136): shadow-utils-4.12.3-3.fc38.x86_64.rp 41 MB/s | 1.3 MB 00:00 (133/136): systemd-libs-252-587.fc38.x86_64.rpm 20 MB/s | 631 kB 00:00 (134/136): tzdata-2022f-1.fc38.noarch.rpm 22 MB/s | 715 kB 00:00 (135/136): xz-libs-5.2.7-1.fc38.x86_64.rpm 4.6 MB/s | 93 kB 00:00 (136/136): zchunk-libs-1.2.3-1.fc38.x86_64.rpm 2.3 MB/s | 51 kB 00:00 -------------------------------------------------------------------------------- Total 35 MB/s | 56 MB 00:01 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.x86_64 1/1 Preparing : 1/1 Installing : libgcc-12.2.1-3.fc38.x86_64 1/136 Running scriptlet: libgcc-12.2.1-3.fc38.x86_64 1/136 Installing : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/136 Running scriptlet: crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 2/136 Installing : tzdata-2022f-1.fc38.noarch 3/136 Installing : fedora-release-identity-basic-38-0.4.noarch 4/136 Installing : python-setuptools-wheel-65.5.0-1.fc38.noarch 5/136 Installing : publicsuffix-list-dafsa-20210518-5.fc37.noarch 6/136 Installing : libssh-config-0.10.4-2.fc38.noarch 7/136 Installing : libreport-filesystem-2.17.6-1.fc38.noarch 8/136 Installing : dnf-data-4.14.0-1.fc38.noarch 9/136 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-38-0.3.noarch 10/136 Installing : fedora-release-38-0.4.noarch 11/136 Installing : fedora-release-common-38-0.4.noarch 12/136 Installing : fedora-repos-rawhide-38-0.3.noarch 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libmodulemd-2.14.0-4.fc37.x86_64 101/136 Installing : libfsverity-1.4-8.fc38.x86_64 102/136 Installing : zchunk-libs-1.2.3-1.fc38.x86_64 103/136 Installing : libsolv-0.7.22-3.fc37.x86_64 104/136 Installing : libnsl2-2.0.0-4.fc38.x86_64 105/136 Installing : libssh-0.10.4-2.fc38.x86_64 106/136 Installing : rpm-build-libs-4.18.0-3.fc38.x86_64 107/136 Installing : python-pip-wheel-22.2.2-2.fc38.noarch 108/136 Installing : python3-3.11.0-1.fc38.x86_64 109/136 Installing : python3-libs-3.11.0-1.fc38.x86_64 110/136 Installing : python3-dbus-1.3.2-1.fc38.x86_64 111/136 Installing : python3-libcomps-0.1.18-4.fc38.x86_64 112/136 Installing : python3-distro-1.8.0-1.fc38.noarch 113/136 Installing : python3-six-1.16.0-8.fc37.noarch 114/136 Installing : python3-dateutil-1:2.8.2-4.fc38.noarch 115/136 Installing : libevent-2.1.12-7.fc38.x86_64 116/136 Installing : openldap-2.6.3-1.fc38.x86_64 117/136 Installing : libcurl-7.86.0-2.fc38.x86_64 118/136 Installing : gnupg2-2.3.8-1.fc38.x86_64 119/136 Installing : gpgme-1.17.0-4.fc37.x86_64 120/136 Installing : librepo-1.14.4-1.fc38.x86_64 121/136 Installing : libdnf-0.68.0-1.fc38.x86_64 122/136 Installing : python3-libdnf-0.68.0-1.fc38.x86_64 123/136 Installing : python3-hawkey-0.68.0-1.fc38.x86_64 124/136 Installing : python3-gpg-1.17.0-4.fc37.x86_64 125/136 Running scriptlet: tpm2-tss-3.2.0-3.fc38.x86_64 126/136 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-3.2.0-3.fc38.x86_64 126/136 Installing : ima-evm-utils-1.4-6.fc37.x86_64 127/136 Installing : rpm-sign-libs-4.18.0-3.fc38.x86_64 128/136 Installing : python3-rpm-4.18.0-3.fc38.x86_64 129/136 Installing : python3-dnf-4.14.0-1.fc38.noarch 130/136 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 131/136 Installing : curl-7.86.0-2.fc38.x86_64 132/136 Installing : libarchive-3.6.1-2.fc37.x86_64 133/136 Running scriptlet: rpm-4.18.0-3.fc38.x86_64 134/136 Installing : rpm-4.18.0-3.fc38.x86_64 134/136 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/136 Installing : dnf-4.14.0-1.fc38.noarch 136/136 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/136 Running scriptlet: filesystem-3.18-2.fc37.x86_64 136/136 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 136/136 Running scriptlet: rpm-4.18.0-3.fc38.x86_64 136/136 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/136 Verifying : alternatives-1.21-1.fc38.x86_64 1/136 Verifying : bzip2-libs-1.0.8-12.fc38.x86_64 2/136 Verifying : coreutils-9.1-8.fc38.x86_64 3/136 Verifying : coreutils-common-9.1-8.fc38.x86_64 4/136 Verifying : file-libs-5.42-4.fc38.x86_64 5/136 Verifying : findutils-1:4.9.0-2.fc38.x86_64 6/136 Verifying : gdbm-libs-1:1.23-2.fc38.x86_64 7/136 Verifying : gnupg2-2.3.8-1.fc38.x86_64 8/136 Verifying : grep-3.8-1.fc38.x86_64 9/136 Verifying : keyutils-libs-1.6.1-5.fc38.x86_64 10/136 Verifying : libattr-2.5.1-5.fc38.x86_64 11/136 Verifying : libb2-0.98.1-7.fc38.x86_64 12/136 Verifying : libblkid-2.38.1-2.fc38.x86_64 13/136 Verifying : libcap-2.48-5.fc38.x86_64 14/136 Verifying : libcomps-0.1.18-4.fc38.x86_64 15/136 Verifying : libevent-2.1.12-7.fc38.x86_64 16/136 Verifying : libffi-3.4.2-9.fc38.x86_64 17/136 Verifying : libfsverity-1.4-8.fc38.x86_64 18/136 Verifying : libidn2-2.3.4-1.fc38.x86_64 19/136 Verifying : libmount-2.38.1-2.fc38.x86_64 20/136 Verifying : libnghttp2-1.50.0-1.fc38.x86_64 21/136 Verifying : libnsl2-2.0.0-4.fc38.x86_64 22/136 Verifying : libpsl-0.21.1-6.fc38.x86_64 23/136 Verifying : libsepol-3.4-3.fc38.x86_64 24/136 Verifying : libsigsegv-2.14-3.fc38.x86_64 25/136 Verifying : libsmartcols-2.38.1-2.fc38.x86_64 26/136 Verifying : libtirpc-1.3.3-0.fc38.x86_64 27/136 Verifying : libunistring-1.0-2.fc38.x86_64 28/136 Verifying : libuuid-2.38.1-2.fc38.x86_64 29/136 Verifying : libxcrypt-4.4.30-1.fc38.x86_64 30/136 Verifying : libyaml-0.2.5-8.fc38.x86_64 31/136 Verifying : lua-libs-5.4.4-6.fc38.x86_64 32/136 Verifying : lz4-libs-1.9.3-5.fc38.x86_64 33/136 Verifying : mpdecimal-2.5.1-4.fc38.x86_64 34/136 Verifying : mpfr-4.1.0-10.fc38.x86_64 35/136 Verifying : ncurses-base-6.3-3.20220501.fc38.noarch 36/136 Verifying : ncurses-libs-6.3-3.20220501.fc38.x86_64 37/136 Verifying : nettle-3.8-2.fc38.x86_64 38/136 Verifying : npth-1.6-10.fc38.x86_64 39/136 Verifying : pcre2-10.40-1.fc38.1.x86_64 40/136 Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 41/136 Verifying : popt-1.19-1.fc38.x86_64 42/136 Verifying : python3-dateutil-1:2.8.2-4.fc38.noarch 43/136 Verifying : python3-libcomps-0.1.18-4.fc38.x86_64 44/136 Verifying : readline-8.2-2.fc38.x86_64 45/136 Verifying : sed-4.8-11.fc38.x86_64 46/136 Verifying : sqlite-libs-3.39.4-1.fc38.x86_64 47/136 Verifying : tpm2-tss-3.2.0-3.fc38.x86_64 48/136 Verifying : zlib-1.2.12-5.fc38.x86_64 49/136 Verifying : audit-libs-3.0.9-1.fc38.x86_64 50/136 Verifying : basesystem-11-14.fc37.noarch 51/136 Verifying : bash-5.2.2-2.fc38.x86_64 52/136 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 53/136 Verifying : crypto-policies-20221003-1.gitcb1ad32.fc38.noarc 54/136 Verifying : curl-7.86.0-2.fc38.x86_64 55/136 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.x86_64 56/136 Verifying : dbus-libs-1:1.14.4-1.fc38.x86_64 57/136 Verifying : dnf-4.14.0-1.fc38.noarch 58/136 Verifying : dnf-data-4.14.0-1.fc38.noarch 59/136 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 60/136 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 61/136 Verifying : elfutils-libelf-0.188-3.fc38.x86_64 62/136 Verifying : elfutils-libs-0.188-3.fc38.x86_64 63/136 Verifying : expat-2.4.8-2.fc37.x86_64 64/136 Verifying : fedora-gpg-keys-38-0.3.noarch 65/136 Verifying : fedora-release-38-0.4.noarch 66/136 Verifying : fedora-release-common-38-0.4.noarch 67/136 Verifying : fedora-release-identity-basic-38-0.4.noarch 68/136 Verifying : fedora-repos-38-0.3.noarch 69/136 Verifying : fedora-repos-rawhide-38-0.3.noarch 70/136 Verifying : filesystem-3.18-2.fc37.x86_64 71/136 Verifying : gawk-5.1.1-4.fc37.x86_64 72/136 Verifying : glib2-2.74.1-2.fc38.x86_64 73/136 Verifying : glibc-2.36.9000-11.fc38.x86_64 74/136 Verifying : glibc-common-2.36.9000-11.fc38.x86_64 75/136 Verifying : glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 76/136 Verifying : gmp-1:6.2.1-3.fc37.x86_64 77/136 Verifying : gnutls-3.7.8-9.fc38.x86_64 78/136 Verifying : gpgme-1.17.0-4.fc37.x86_64 79/136 Verifying : ima-evm-utils-1.4-6.fc37.x86_64 80/136 Verifying : json-c-0.16-3.fc38.x86_64 81/136 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 82/136 Verifying : libacl-2.3.1-4.fc37.x86_64 83/136 Verifying : libarchive-3.6.1-2.fc37.x86_64 84/136 Verifying : libassuan-2.5.5-5.fc37.x86_64 85/136 Verifying : libbrotli-1.0.9-9.fc37.x86_64 86/136 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 87/136 Verifying : libcom_err-1.46.5-3.fc37.x86_64 88/136 Verifying : libcurl-7.86.0-2.fc38.x86_64 89/136 Verifying : libdnf-0.68.0-1.fc38.x86_64 90/136 Verifying : libgcc-12.2.1-3.fc38.x86_64 91/136 Verifying : libgcrypt-1.10.1-4.fc37.x86_64 92/136 Verifying : libgomp-12.2.1-3.fc38.x86_64 93/136 Verifying : libgpg-error-1.46-1.fc38.x86_64 94/136 Verifying : libksba-1.6.2-1.fc38.x86_64 95/136 Verifying : libmodulemd-2.14.0-4.fc37.x86_64 96/136 Verifying : librepo-1.14.4-1.fc38.x86_64 97/136 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 98/136 Verifying : libselinux-3.4-5.fc37.x86_64 99/136 Verifying : libsemanage-3.4-5.fc37.x86_64 100/136 Verifying : libsolv-0.7.22-3.fc37.x86_64 101/136 Verifying : libssh-0.10.4-2.fc38.x86_64 102/136 Verifying : libssh-config-0.10.4-2.fc38.noarch 103/136 Verifying : libstdc++-12.2.1-3.fc38.x86_64 104/136 Verifying : libtasn1-4.18.0-3.fc37.x86_64 105/136 Verifying : libverto-0.3.2-4.fc37.x86_64 106/136 Verifying : libxml2-2.10.3-2.fc38.x86_64 107/136 Verifying : libzstd-1.5.2-3.fc37.x86_64 108/136 Verifying : openldap-2.6.3-1.fc38.x86_64 109/136 Verifying : openssl-libs-1:3.0.5-6.fc38.x86_64 110/136 Verifying : p11-kit-0.24.1-3.fc37.x86_64 111/136 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 112/136 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 113/136 Verifying : python-pip-wheel-22.2.2-2.fc38.noarch 114/136 Verifying : python-setuptools-wheel-65.5.0-1.fc38.noarch 115/136 Verifying : python3-3.11.0-1.fc38.x86_64 116/136 Verifying : python3-dbus-1.3.2-1.fc38.x86_64 117/136 Verifying : python3-distro-1.8.0-1.fc38.noarch 118/136 Verifying : python3-dnf-4.14.0-1.fc38.noarch 119/136 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 120/136 Verifying : python3-gpg-1.17.0-4.fc37.x86_64 121/136 Verifying : python3-hawkey-0.68.0-1.fc38.x86_64 122/136 Verifying : python3-libdnf-0.68.0-1.fc38.x86_64 123/136 Verifying : python3-libs-3.11.0-1.fc38.x86_64 124/136 Verifying : python3-rpm-4.18.0-3.fc38.x86_64 125/136 Verifying : python3-six-1.16.0-8.fc37.noarch 126/136 Verifying : rpm-4.18.0-3.fc38.x86_64 127/136 Verifying : rpm-build-libs-4.18.0-3.fc38.x86_64 128/136 Verifying : rpm-libs-4.18.0-3.fc38.x86_64 129/136 Verifying : rpm-sign-libs-4.18.0-3.fc38.x86_64 130/136 Verifying : setup-2.14.2-1.fc38.noarch 131/136 Verifying : shadow-utils-2:4.12.3-3.fc38.x86_64 132/136 Verifying : systemd-libs-252-587.fc38.x86_64 133/136 Verifying : tzdata-2022f-1.fc38.noarch 134/136 Verifying : xz-libs-5.2.7-1.fc38.x86_64 135/136 Verifying : zchunk-libs-1.2.3-1.fc38.x86_64 136/136 Installed products updated. Installed: alternatives-1.21-1.fc38.x86_64 audit-libs-3.0.9-1.fc38.x86_64 basesystem-11-14.fc37.noarch bash-5.2.2-2.fc38.x86_64 bzip2-libs-1.0.8-12.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.x86_64 coreutils-common-9.1-8.fc38.x86_64 crypto-policies-20221003-1.gitcb1ad32.fc38.noarch curl-7.86.0-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 dbus-libs-1:1.14.4-1.fc38.x86_64 dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 expat-2.4.8-2.fc37.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.4.noarch fedora-release-common-38-0.4.noarch fedora-release-identity-basic-38-0.4.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc38.x86_64 gawk-5.1.1-4.fc37.x86_64 gdbm-libs-1:1.23-2.fc38.x86_64 glib2-2.74.1-2.fc38.x86_64 glibc-2.36.9000-11.fc38.x86_64 glibc-common-2.36.9000-11.fc38.x86_64 glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnupg2-2.3.8-1.fc38.x86_64 gnutls-3.7.8-9.fc38.x86_64 gpgme-1.17.0-4.fc37.x86_64 grep-3.8-1.fc38.x86_64 ima-evm-utils-1.4-6.fc37.x86_64 json-c-0.16-3.fc38.x86_64 keyutils-libs-1.6.1-5.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libassuan-2.5.5-5.fc37.x86_64 libattr-2.5.1-5.fc38.x86_64 libb2-0.98.1-7.fc38.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcomps-0.1.18-4.fc38.x86_64 libcurl-7.86.0-2.fc38.x86_64 libdnf-0.68.0-1.fc38.x86_64 libevent-2.1.12-7.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libfsverity-1.4-8.fc38.x86_64 libgcc-12.2.1-3.fc38.x86_64 libgcrypt-1.10.1-4.fc37.x86_64 libgomp-12.2.1-3.fc38.x86_64 libgpg-error-1.46-1.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libksba-1.6.2-1.fc38.x86_64 libmodulemd-2.14.0-4.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.50.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc38.x86_64 libpsl-0.21.1-6.fc38.x86_64 librepo-1.14.4-1.fc38.x86_64 libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc38.x86_64 libsigsegv-2.14-3.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libsolv-0.7.22-3.fc37.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-12.2.1-3.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc38.x86_64 libunistring-1.0-2.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.30-1.fc38.x86_64 libxml2-2.10.3-2.fc38.x86_64 libyaml-0.2.5-8.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-6.fc38.x86_64 lz4-libs-1.9.3-5.fc38.x86_64 mpdecimal-2.5.1-4.fc38.x86_64 mpfr-4.1.0-10.fc38.x86_64 ncurses-base-6.3-3.20220501.fc38.noarch ncurses-libs-6.3-3.20220501.fc38.x86_64 nettle-3.8-2.fc38.x86_64 npth-1.6-10.fc38.x86_64 openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-6.fc38.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 pcre2-10.40-1.fc38.1.x86_64 pcre2-syntax-10.40-1.fc38.1.noarch popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-pip-wheel-22.2.2-2.fc38.noarch python-setuptools-wheel-65.5.0-1.fc38.noarch python3-3.11.0-1.fc38.x86_64 python3-dateutil-1:2.8.2-4.fc38.noarch python3-dbus-1.3.2-1.fc38.x86_64 python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.0-4.fc37.x86_64 python3-hawkey-0.68.0-1.fc38.x86_64 python3-libcomps-0.1.18-4.fc38.x86_64 python3-libdnf-0.68.0-1.fc38.x86_64 python3-libs-3.11.0-1.fc38.x86_64 python3-rpm-4.18.0-3.fc38.x86_64 python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.x86_64 rpm-4.18.0-3.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 rpm-libs-4.18.0-3.fc38.x86_64 rpm-sign-libs-4.18.0-3.fc38.x86_64 sed-4.8-11.fc38.x86_64 setup-2.14.2-1.fc38.noarch shadow-utils-2:4.12.3-3.fc38.x86_64 sqlite-libs-3.39.4-1.fc38.x86_64 systemd-libs-252-587.fc38.x86_64 tpm2-tss-3.2.0-3.fc38.x86_64 tzdata-2022f-1.fc38.noarch xz-libs-5.2.7-1.fc38.x86_64 zchunk-libs-1.2.3-1.fc38.x86_64 zlib-1.2.12-5.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 52 kB/s | 3.0 kB 00:00 Copr repository 55 MB/s | 23 MB 00:00 fedora 421 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.2-2.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-12.fc38 copr_base 53 k coreutils x86_64 9.1-8.fc38 copr_base 1.1 M cpio x86_64 2.13-13.fc38 copr_base 270 k diffutils x86_64 3.8-3.fc37 fedora 378 k fedora-release-common noarch 38-0.4 fedora 22 k findutils x86_64 1:4.9.0-2.fc38 copr_base 483 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36.9000-11.fc38 fedora 22 k grep x86_64 3.8-1.fc38 copr_base 282 k gzip x86_64 1.12-2.fc38 copr_base 159 k info x86_64 6.8-4.fc38 copr_base 225 k patch x86_64 2.7.6-17.fc38 copr_base 124 k redhat-rpm-config noarch 233-1.fc38 fedora 81 k rpm-build x86_64 4.18.0-3.fc38 fedora 77 k sed x86_64 4.8-11.fc38 copr_base 297 k shadow-utils x86_64 2:4.12.3-3.fc38 fedora 1.3 M tar x86_64 2:1.34-5.fc38 fedora 885 k unzip x86_64 6.0-58.fc38 copr_base 183 k util-linux x86_64 2.38.1-2.fc38 copr_base 2.3 M which x86_64 2.21-36.fc38 fedora 41 k xz x86_64 5.2.7-1.fc38 fedora 304 k Installing dependencies: alternatives x86_64 1.21-1.fc38 copr_base 38 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs x86_64 3.0.9-1.fc38 fedora 116 k authselect x86_64 1.4.0-3.fc37 fedora 144 k authselect-libs x86_64 1.4.0-3.fc37 fedora 248 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.39-3.fc38 fedora 5.4 M binutils-gold x86_64 2.39-3.fc38 fedora 778 k bzip2-libs x86_64 1.0.8-12.fc38 copr_base 42 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common x86_64 9.1-8.fc38 copr_base 2.0 M cracklib x86_64 2.9.7-30.fc38 copr_base 81 k crypto-policies noarch 20221003-1.gitcb1ad32.fc38 fedora 86 k curl x86_64 7.86.0-2.fc38 fedora 334 k cyrus-sasl-lib x86_64 2.1.28-8.fc38 fedora 792 k debugedit x86_64 5.0-5.fc38 copr_base 77 k dwz x86_64 0.15-1.fc38 fedora 136 k ed x86_64 1.18-2.fc38 copr_base 79 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.188-3.fc38 fedora 529 k elfutils-debuginfod-client x86_64 0.188-3.fc38 fedora 40 k elfutils-default-yama-scope noarch 0.188-3.fc38 fedora 15 k elfutils-libelf x86_64 0.188-3.fc38 fedora 196 k elfutils-libs x86_64 0.188-3.fc38 fedora 257 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.4 fedora 11 k fedora-release-identity-basic noarch 38-0.4 fedora 12 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file x86_64 5.42-4.fc38 copr_base 49 k file-libs x86_64 5.42-4.fc38 copr_base 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-9.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 12.1-9.fc38 fedora 3.7 M gdbm-libs x86_64 1:1.23-2.fc38 copr_base 56 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc x86_64 2.36.9000-11.fc38 fedora 2.1 M glibc-common x86_64 2.36.9000-11.fc38 fedora 301 k glibc-gconv-extra x86_64 2.36.9000-11.fc38 fedora 1.6 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson x86_64 2.13.1-5.fc38 copr_base 45 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc38 copr_base 32 k krb5-libs x86_64 1.19.2-11.fc37.1 fedora 727 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-2.fc37 fedora 397 k libattr x86_64 2.5.1-5.fc38 copr_base 18 k libblkid x86_64 2.38.1-2.fc38 copr_base 107 k libbrotli x86_64 1.0.9-9.fc37 fedora 315 k libcap x86_64 2.48-5.fc38 copr_base 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.86.0-2.fc38 fedora 305 k libdb x86_64 5.3.28-53.fc37 fedora 760 k libeconf x86_64 0.4.0-4.fc38 copr_base 28 k libevent x86_64 2.1.12-7.fc38 copr_base 259 k libfdisk x86_64 2.38.1-2.fc38 copr_base 161 k libffi x86_64 3.4.2-9.fc38 copr_base 38 k libgcc x86_64 12.2.1-3.fc38 fedora 108 k libgomp x86_64 12.2.1-3.fc38 fedora 295 k libidn2 x86_64 2.3.4-1.fc38 copr_base 154 k libmount x86_64 2.38.1-2.fc38 copr_base 136 k libnghttp2 x86_64 1.50.0-1.fc38 copr_base 75 k libnsl2 x86_64 2.0.0-4.fc38 copr_base 31 k libpkgconf x86_64 1.8.0-3.fc38 copr_base 36 k libpsl x86_64 0.21.1-6.fc38 copr_base 64 k libpwquality x86_64 1.4.4-11.fc38 copr_base 105 k libselinux x86_64 3.4-5.fc37 fedora 86 k libsemanage x86_64 3.4-5.fc37 fedora 120 k libsepol x86_64 3.4-3.fc38 copr_base 322 k libsigsegv x86_64 2.14-3.fc38 copr_base 27 k libsmartcols x86_64 2.38.1-2.fc38 copr_base 65 k libssh x86_64 0.10.4-2.fc38 fedora 209 k libssh-config noarch 0.10.4-2.fc38 fedora 8.8 k libstdc++ x86_64 12.2.1-3.fc38 fedora 799 k libtasn1 x86_64 4.18.0-3.fc37 fedora 75 k libtirpc x86_64 1.3.3-0.fc38 copr_base 94 k libunistring x86_64 1.0-2.fc38 copr_base 549 k libutempter x86_64 1.2.1-7.fc38 copr_base 26 k libuuid x86_64 2.38.1-2.fc38 copr_base 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.30-1.fc38 copr_base 118 k libxml2 x86_64 2.10.3-2.fc38 fedora 705 k libzstd x86_64 1.5.2-3.fc37 fedora 294 k lua-libs x86_64 5.4.4-6.fc38 copr_base 132 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.3-5.fc38 copr_base 71 k mpfr x86_64 4.1.0-10.fc38 copr_base 331 k ncurses-base noarch 6.3-3.20220501.fc38 copr_base 62 k ncurses-libs x86_64 6.3-3.20220501.fc38 copr_base 329 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.3-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.5-6.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-3.fc37 fedora 376 k p11-kit-trust x86_64 0.24.1-3.fc37 fedora 138 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam x86_64 1.5.2-14.fc37 fedora 560 k pam-libs x86_64 1.5.2-14.fc37 fedora 58 k pcre2 x86_64 10.40-1.fc38.1 copr_base 237 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k pkgconf x86_64 1.8.0-3.fc38 copr_base 42 k pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k pkgconf-pkg-config x86_64 1.8.0-3.fc38 copr_base 11 k popt x86_64 1.19-1.fc38 copr_base 59 k publicsuffix-list-dafsa noarch 20210518-5.fc37 fedora 58 k python-srpm-macros noarch 3.11-5.fc38 fedora 24 k qt5-srpm-macros noarch 5.15.7-1.fc38 fedora 7.9 k readline x86_64 8.2-2.fc38 copr_base 211 k rpm x86_64 4.18.0-3.fc38 fedora 570 k rpm-build-libs x86_64 4.18.0-3.fc38 fedora 94 k rpm-libs x86_64 4.18.0-3.fc38 fedora 320 k rpmautospec-rpm-macros noarch 0.3.0-1.fc37 fedora 8.8 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.2-1.fc38 fedora 151 k sqlite-libs x86_64 3.39.4-1.fc38 copr_base 659 k systemd-libs x86_64 252-587.fc38 fedora 631 k tzdata noarch 2022f-1.fc38 fedora 715 k util-linux-core x86_64 2.38.1-2.fc38 copr_base 455 k xxhash-libs x86_64 0.8.1-3.fc38 copr_base 41 k xz-libs x86_64 5.2.7-1.fc38 fedora 93 k zip x86_64 3.0-33.fc38 copr_base 260 k zlib x86_64 1.2.12-5.fc38 copr_base 94 k zstd x86_64 1.5.2-3.fc37 fedora 447 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total size: 51 M Installed size: 176 M Downloading Packages: [SKIPPED] alternatives-1.21-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] info-6.8-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.2-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.50.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.4-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.4-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc38.x86_64.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.30-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.0-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-3.20220501.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-3.20220501.fc38.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc38.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc38.1.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.39.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-33.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.12-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.9-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-20221003-1.gitcb1ad32.fc38.noarch.rpm: Already downloaded [SKIPPED] curl-7.86.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.4.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-9.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] krb5-libs-1.19.2-11.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcurl-7.86.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded [SKIPPED] libgcc-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgomp-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.4-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libstdc++-12.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.18.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-14.fc37.x86_64.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20210518-5.fc37.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-5.fc38.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] redhat-rpm-config-233-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.0-1.fc37.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] setup-2.14.2-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.12.3-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-252-587.fc38.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2022f-1.fc38.noarch.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.2.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.2.7-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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glibc-gconv-extra-2.36.9000-11.fc38.x86_64 96/151 Verifying : glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 97/151 Verifying : gmp-1:6.2.1-3.fc37.x86_64 98/151 Verifying : gnat-srpm-macros-4-16.fc37.noarch 99/151 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 100/151 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 101/151 Verifying : krb5-libs-1.19.2-11.fc37.1.x86_64 102/151 Verifying : libacl-2.3.1-4.fc37.x86_64 103/151 Verifying : libarchive-3.6.1-2.fc37.x86_64 104/151 Verifying : libbrotli-1.0.9-9.fc37.x86_64 105/151 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 106/151 Verifying : libcom_err-1.46.5-3.fc37.x86_64 107/151 Verifying : libcurl-7.86.0-2.fc38.x86_64 108/151 Verifying : libdb-5.3.28-53.fc37.x86_64 109/151 Verifying : libgcc-12.2.1-3.fc38.x86_64 110/151 Verifying : libgomp-12.2.1-3.fc38.x86_64 111/151 Verifying : libselinux-3.4-5.fc37.x86_64 112/151 Verifying : libsemanage-3.4-5.fc37.x86_64 113/151 Verifying : libssh-0.10.4-2.fc38.x86_64 114/151 Verifying : libssh-config-0.10.4-2.fc38.noarch 115/151 Verifying : libstdc++-12.2.1-3.fc38.x86_64 116/151 Verifying : libtasn1-4.18.0-3.fc37.x86_64 117/151 Verifying : libverto-0.3.2-4.fc37.x86_64 118/151 Verifying : libxml2-2.10.3-2.fc38.x86_64 119/151 Verifying : libzstd-1.5.2-3.fc37.x86_64 120/151 Verifying : lua-srpm-macros-1-7.fc37.noarch 121/151 Verifying : nim-srpm-macros-3-7.fc37.noarch 122/151 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 123/151 Verifying : openblas-srpm-macros-2-12.fc37.noarch 124/151 Verifying : openldap-2.6.3-1.fc38.x86_64 125/151 Verifying : openssl-libs-1:3.0.5-6.fc38.x86_64 126/151 Verifying : p11-kit-0.24.1-3.fc37.x86_64 127/151 Verifying : p11-kit-trust-0.24.1-3.fc37.x86_64 128/151 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 129/151 Verifying : pam-1.5.2-14.fc37.x86_64 130/151 Verifying : pam-libs-1.5.2-14.fc37.x86_64 131/151 Verifying : perl-srpm-macros-1-46.fc37.noarch 132/151 Verifying : publicsuffix-list-dafsa-20210518-5.fc37.noarch 133/151 Verifying : python-srpm-macros-3.11-5.fc38.noarch 134/151 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 135/151 Verifying : redhat-rpm-config-233-1.fc38.noarch 136/151 Verifying : rpm-4.18.0-3.fc38.x86_64 137/151 Verifying : rpm-build-4.18.0-3.fc38.x86_64 138/151 Verifying : rpm-build-libs-4.18.0-3.fc38.x86_64 139/151 Verifying : rpm-libs-4.18.0-3.fc38.x86_64 140/151 Verifying : rpmautospec-rpm-macros-0.3.0-1.fc37.noarch 141/151 Verifying : rust-srpm-macros-23-1.fc38.noarch 142/151 Verifying : setup-2.14.2-1.fc38.noarch 143/151 Verifying : shadow-utils-2:4.12.3-3.fc38.x86_64 144/151 Verifying : systemd-libs-252-587.fc38.x86_64 145/151 Verifying : tar-2:1.34-5.fc38.x86_64 146/151 Verifying : tzdata-2022f-1.fc38.noarch 147/151 Verifying : which-2.21-36.fc38.x86_64 148/151 Verifying : xz-5.2.7-1.fc38.x86_64 149/151 Verifying : xz-libs-5.2.7-1.fc38.x86_64 150/151 Verifying : zstd-1.5.2-3.fc37.x86_64 151/151 Installed: alternatives-1.21-1.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-1.fc38.x86_64 authselect-1.4.0-3.fc37.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.2.2-2.fc38.x86_64 binutils-2.39-3.fc38.x86_64 binutils-gold-2.39-3.fc38.x86_64 bzip2-1.0.8-12.fc38.x86_64 bzip2-libs-1.0.8-12.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.x86_64 coreutils-common-9.1-8.fc38.x86_64 cpio-2.13-13.fc38.x86_64 cracklib-2.9.7-30.fc38.x86_64 crypto-policies-20221003-1.gitcb1ad32.fc38.noarch curl-7.86.0-2.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 debugedit-5.0-5.fc38.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.15-1.fc38.x86_64 ed-1.18-2.fc38.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.4.noarch fedora-release-common-38-0.4.noarch fedora-release-identity-basic-38-0.4.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.x86_64 file-libs-5.42-4.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc38.x86_64 fonts-srpm-macros-1:2.0.5-9.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-12.1-9.fc38.x86_64 gdbm-libs-1:1.23-2.fc38.x86_64 ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-11.fc38.x86_64 glibc-common-2.36.9000-11.fc38.x86_64 glibc-gconv-extra-2.36.9000-11.fc38.x86_64 glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.x86_64 gzip-1.12-2.fc38.x86_64 info-6.8-4.fc38.x86_64 jansson-2.13.1-5.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-2.fc37.x86_64 libattr-2.5.1-5.fc38.x86_64 libblkid-2.38.1-2.fc38.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.86.0-2.fc38.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.4.0-4.fc38.x86_64 libevent-2.1.12-7.fc38.x86_64 libfdisk-2.38.1-2.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libgcc-12.2.1-3.fc38.x86_64 libgomp-12.2.1-3.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libmount-2.38.1-2.fc38.x86_64 libnghttp2-1.50.0-1.fc38.x86_64 libnsl2-2.0.0-4.fc38.x86_64 libpkgconf-1.8.0-3.fc38.x86_64 libpsl-0.21.1-6.fc38.x86_64 libpwquality-1.4.4-11.fc38.x86_64 libselinux-3.4-5.fc37.x86_64 libsemanage-3.4-5.fc37.x86_64 libsepol-3.4-3.fc38.x86_64 libsigsegv-2.14-3.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 libssh-0.10.4-2.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch libstdc++-12.2.1-3.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 libtirpc-1.3.3-0.fc38.x86_64 libunistring-1.0-2.fc38.x86_64 libutempter-1.2.1-7.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.30-1.fc38.x86_64 libxml2-2.10.3-2.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 lua-libs-5.4.4-6.fc38.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc38.x86_64 mpfr-4.1.0-10.fc38.x86_64 ncurses-base-6.3-3.20220501.fc38.noarch ncurses-libs-6.3-3.20220501.fc38.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.x86_64 openssl-libs-1:3.0.5-6.fc38.x86_64 p11-kit-0.24.1-3.fc37.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc38.x86_64 pcre2-10.40-1.fc38.1.x86_64 pcre2-syntax-10.40-1.fc38.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc38.x86_64 pkgconf-m4-1.8.0-3.fc38.noarch pkgconf-pkg-config-1.8.0-3.fc38.x86_64 popt-1.19-1.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch python-srpm-macros-3.11-5.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.x86_64 redhat-rpm-config-233-1.fc38.noarch rpm-4.18.0-3.fc38.x86_64 rpm-build-4.18.0-3.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 rpm-libs-4.18.0-3.fc38.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc38.x86_64 setup-2.14.2-1.fc38.noarch shadow-utils-2:4.12.3-3.fc38.x86_64 sqlite-libs-3.39.4-1.fc38.x86_64 systemd-libs-252-587.fc38.x86_64 tar-2:1.34-5.fc38.x86_64 tzdata-2022f-1.fc38.noarch unzip-6.0-58.fc38.x86_64 util-linux-2.38.1-2.fc38.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 which-2.21-36.fc38.x86_64 xxhash-libs-0.8.1-3.fc38.x86_64 xz-5.2.7-1.fc38.x86_64 xz-libs-5.2.7-1.fc38.x86_64 zip-3.0-33.fc38.x86_64 zlib-1.2.12-5.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: basesystem-11-14.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc38.x86_64 redhat-rpm-config-233-1.fc38.noarch ghc-srpm-macros-1.5.0-7.fc37.noarch curl-7.86.0-2.fc38.x86_64 libsepol-3.4-3.fc38.x86_64 libxcrypt-4.4.30-1.fc38.x86_64 sed-4.8-11.fc38.x86_64 libpwquality-1.4.4-11.fc38.x86_64 rpm-4.18.0-3.fc38.x86_64 libpsl-0.21.1-6.fc38.x86_64 fpc-srpm-macros-1.3-6.fc37.noarch ncurses-base-6.3-3.20220501.fc38.noarch bzip2-libs-1.0.8-12.fc38.x86_64 libblkid-2.38.1-2.fc38.x86_64 shadow-utils-4.12.3-3.fc38.x86_64 libpkgconf-1.8.0-3.fc38.x86_64 qt5-srpm-macros-5.15.7-1.fc38.noarch pkgconf-m4-1.8.0-3.fc38.noarch libutempter-1.2.1-7.fc38.x86_64 lua-libs-5.4.4-6.fc38.x86_64 cpio-2.13-13.fc38.x86_64 libsmartcols-2.38.1-2.fc38.x86_64 rpm-build-libs-4.18.0-3.fc38.x86_64 libcom_err-1.46.5-3.fc37.x86_64 rpmautospec-rpm-macros-0.3.0-1.fc37.noarch pkgconf-1.8.0-3.fc38.x86_64 zstd-1.5.2-3.fc37.x86_64 libmount-2.38.1-2.fc38.x86_64 gawk-5.1.1-4.fc37.x86_64 cracklib-2.9.7-30.fc38.x86_64 fonts-srpm-macros-2.0.5-9.fc38.noarch p11-kit-0.24.1-3.fc37.x86_64 rust-srpm-macros-23-1.fc38.noarch perl-srpm-macros-1-46.fc37.noarch sqlite-libs-3.39.4-1.fc38.x86_64 coreutils-9.1-8.fc38.x86_64 dwz-0.15-1.fc38.x86_64 ca-certificates-2022.2.54-5.fc37.noarch libxml2-2.10.3-2.fc38.x86_64 libbrotli-1.0.9-9.fc37.x86_64 authselect-1.4.0-3.fc37.x86_64 libcap-2.48-5.fc38.x86_64 info-6.8-4.fc38.x86_64 ncurses-libs-6.3-3.20220501.fc38.x86_64 grep-3.8-1.fc38.x86_64 debugedit-5.0-5.fc38.x86_64 libsemanage-3.4-5.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch libevent-2.1.12-7.fc38.x86_64 python-srpm-macros-3.11-5.fc38.noarch audit-libs-3.0.9-1.fc38.x86_64 ocaml-srpm-macros-7-2.fc37.noarch glibc-gconv-extra-2.36.9000-11.fc38.x86_64 rpm-libs-4.18.0-3.fc38.x86_64 libunistring-1.0-2.fc38.x86_64 p11-kit-trust-0.24.1-3.fc37.x86_64 libselinux-3.4-5.fc37.x86_64 which-2.21-36.fc38.x86_64 libidn2-2.3.4-1.fc38.x86_64 libdb-5.3.28-53.fc37.x86_64 util-linux-core-2.38.1-2.fc38.x86_64 elfutils-libs-0.188-3.fc38.x86_64 fedora-repos-38-0.3.noarch glibc-minimal-langpack-2.36.9000-11.fc38.x86_64 patch-2.7.6-17.fc38.x86_64 lz4-libs-1.9.3-5.fc38.x86_64 pam-libs-1.5.2-14.fc37.x86_64 bzip2-1.0.8-12.fc38.x86_64 gzip-1.12-2.fc38.x86_64 binutils-2.39-3.fc38.x86_64 libgcc-12.2.1-3.fc38.x86_64 fedora-release-common-38-0.4.noarch gnat-srpm-macros-4-16.fc37.noarch gpg-pubkey-5323552a-6112bcdc zip-3.0-33.fc38.x86_64 rpm-build-4.18.0-3.fc38.x86_64 util-linux-2.38.1-2.fc38.x86_64 bash-5.2.2-2.fc38.x86_64 go-srpm-macros-3.2.0-1.fc38.noarch fedora-release-38-0.4.noarch setup-2.14.2-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch libattr-2.5.1-5.fc38.x86_64 fedora-repos-rawhide-38-0.3.noarch libfdisk-2.38.1-2.fc38.x86_64 coreutils-common-9.1-8.fc38.x86_64 libffi-3.4.2-9.fc38.x86_64 libacl-2.3.1-4.fc37.x86_64 libnghttp2-1.50.0-1.fc38.x86_64 tar-1.34-5.fc38.x86_64 pcre2-10.40-1.fc38.1.x86_64 ed-1.18-2.fc38.x86_64 libverto-0.3.2-4.fc37.x86_64 gdbm-libs-1.23-2.fc38.x86_64 tzdata-2022f-1.fc38.noarch mpfr-4.1.0-10.fc38.x86_64 libstdc++-12.2.1-3.fc38.x86_64 xxhash-libs-0.8.1-3.fc38.x86_64 openssl-libs-3.0.5-6.fc38.x86_64 pcre2-syntax-10.40-1.fc38.1.noarch elfutils-0.188-3.fc38.x86_64 unzip-6.0-58.fc38.x86_64 elfutils-debuginfod-client-0.188-3.fc38.x86_64 jansson-2.13.1-5.fc38.x86_64 libgomp-12.2.1-3.fc38.x86_64 krb5-libs-1.19.2-11.fc37.1.x86_64 systemd-libs-252-587.fc38.x86_64 libarchive-3.6.1-2.fc37.x86_64 libtirpc-1.3.3-0.fc38.x86_64 pam-1.5.2-14.fc37.x86_64 libssh-0.10.4-2.fc38.x86_64 libzstd-1.5.2-3.fc37.x86_64 findutils-4.9.0-2.fc38.x86_64 libsigsegv-2.14-3.fc38.x86_64 libssh-config-0.10.4-2.fc38.noarch openblas-srpm-macros-2-12.fc37.noarch gpg-pubkey-eb10b464-6202d9c6 gmp-6.2.1-3.fc37.x86_64 fedora-gpg-keys-38-0.3.noarch file-5.42-4.fc38.x86_64 glibc-2.36.9000-11.fc38.x86_64 gdb-minimal-12.1-9.fc38.x86_64 filesystem-3.18-2.fc37.x86_64 package-notes-srpm-macros-0.5-6.fc38.noarch keyutils-libs-1.6.1-5.fc38.x86_64 readline-8.2-2.fc38.x86_64 libtasn1-4.18.0-3.fc37.x86_64 elfutils-libelf-0.188-3.fc38.x86_64 ansible-srpm-macros-1-8.1.fc38.noarch crypto-policies-20221003-1.gitcb1ad32.fc38.noarch libcurl-7.86.0-2.fc38.x86_64 xz-5.2.7-1.fc38.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch libnsl2-2.0.0-4.fc38.x86_64 alternatives-1.21-1.fc38.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 glibc-common-2.36.9000-11.fc38.x86_64 authselect-libs-1.4.0-3.fc37.x86_64 binutils-gold-2.39-3.fc38.x86_64 xz-libs-5.2.7-1.fc38.x86_64 libuuid-2.38.1-2.fc38.x86_64 publicsuffix-list-dafsa-20210518-5.fc37.noarch openldap-2.6.3-1.fc38.x86_64 cyrus-sasl-lib-2.1.28-8.fc38.x86_64 zlib-1.2.12-5.fc38.x86_64 diffutils-3.8-3.fc37.x86_64 popt-1.19-1.fc38.x86_64 file-libs-5.42-4.fc38.x86_64 fedora-release-identity-basic-38-0.4.noarch nim-srpm-macros-3-7.fc37.noarch lua-srpm-macros-1-7.fc37.noarch libeconf-0.4.0-4.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-3.fc38.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ohvfu39_/smoldyn/smoldyn.spec) Config(child) 1 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=108000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1667993433.618873 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.3 starting (python version = 3.10.4, NVR = mock-3.3-1.fc35)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667993433.618873/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1667993433.618873/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.3 INFO: Mock Version: 3.3 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 49 kB/s | 3.0 kB 00:00 Copr repository 34 MB/s | 23 MB 00:00 fedora 440 kB/s | 20 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-3.fc38.src.rpm Start: build setup for smoldyn-2.67.3-3.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-3.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 53 kB/s | 3.0 kB 00:00 Copr repository 32 MB/s | 23 MB 00:00 fedora 437 kB/s | 20 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: boost-devel x86_64 1.78.0-9.fc37 fedora 13 M cmake x86_64 3.25.0-0.5.rc3.fc38 fedora 6.8 M freeglut-devel x86_64 3.4.0-1.fc38 copr_base 891 k gcc x86_64 12.2.1-3.fc38 fedora 33 M gcc-c++ x86_64 12.2.1-3.fc38 fedora 13 M libXi-devel x86_64 1.8-3.fc37 fedora 116 k libXmu-devel x86_64 1.1.4-1.fc38 fedora 27 k libglvnd-devel x86_64 1:1.5.0-1.fc38 copr_base 156 k libtiff-devel x86_64 4.4.0-4.fc38 copr_base 514 k make x86_64 1:4.4-1.fc38 copr_base 571 k perl-macros noarch 4:5.36.0-492.fc38 copr_base 15 k pybind11-devel x86_64 2.10.1-1.fc38 fedora 167 k python3-devel x86_64 3.11.0-1.fc38 fedora 269 k python3-flaky noarch 3.7.0-9.fc37 fedora 46 k python3-matplotlib x86_64 3.6.2-1.fc38 fedora 4.2 M python3-setuptools noarch 65.5.0-1.fc38 fedora 1.7 M python3-wheel noarch 1:0.37.1-4.fc37 fedora 102 k xorg-x11-server-Xvfb x86_64 1.20.14-8.fc37 fedora 893 k zlib-devel x86_64 1.2.12-5.fc38 copr_base 45 k Installing dependencies: annobin-docs noarch 10.92-1.fc38 fedora 92 k annobin-plugin-gcc x86_64 10.92-1.fc38 fedora 888 k boost x86_64 1.78.0-9.fc37 fedora 14 k boost-atomic x86_64 1.78.0-9.fc37 fedora 20 k boost-chrono x86_64 1.78.0-9.fc37 fedora 27 k boost-container x86_64 1.78.0-9.fc37 fedora 40 k boost-context x86_64 1.78.0-9.fc37 fedora 17 k boost-contract x86_64 1.78.0-9.fc37 fedora 47 k boost-coroutine x86_64 1.78.0-9.fc37 fedora 22 k boost-date-time x86_64 1.78.0-9.fc37 fedora 16 k boost-fiber x86_64 1.78.0-9.fc37 fedora 42 k boost-filesystem x86_64 1.78.0-9.fc37 fedora 66 k boost-graph x86_64 1.78.0-9.fc37 fedora 149 k boost-iostreams x86_64 1.78.0-9.fc37 fedora 42 k boost-json x86_64 1.78.0-9.fc37 fedora 111 k boost-locale x86_64 1.78.0-9.fc37 fedora 218 k boost-log x86_64 1.78.0-9.fc37 fedora 483 k boost-math x86_64 1.78.0-9.fc37 fedora 204 k boost-nowide x86_64 1.78.0-9.fc37 fedora 21 k boost-numpy3 x86_64 1.78.0-9.fc37 fedora 30 k boost-program-options x86_64 1.78.0-9.fc37 fedora 107 k boost-python3 x86_64 1.78.0-9.fc37 fedora 96 k boost-random x86_64 1.78.0-9.fc37 fedora 26 k boost-regex x86_64 1.78.0-9.fc37 fedora 113 k boost-serialization x86_64 1.78.0-9.fc37 fedora 134 k boost-stacktrace x86_64 1.78.0-9.fc37 fedora 30 k boost-system x86_64 1.78.0-9.fc37 fedora 16 k boost-test x86_64 1.78.0-9.fc37 fedora 234 k boost-thread x86_64 1.78.0-9.fc37 fedora 59 k boost-timer x86_64 1.78.0-9.fc37 fedora 26 k boost-type_erasure x86_64 1.78.0-9.fc37 fedora 35 k boost-wave x86_64 1.78.0-9.fc37 fedora 204 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cmake-data noarch 3.25.0-0.5.rc3.fc38 fedora 2.2 M cmake-filesystem x86_64 3.25.0-0.5.rc3.fc38 fedora 16 k cmake-rpm-macros noarch 3.25.0-0.5.rc3.fc38 fedora 16 k cpp x86_64 12.2.1-3.fc38 fedora 11 M dejavu-sans-fonts noarch 2.37-19.fc37 fedora 1.3 M emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat x86_64 2.4.8-2.fc37 fedora 110 k flexiblas x86_64 3.2.1-2.fc38 copr_base 33 k flexiblas-netlib x86_64 3.2.1-2.fc38 copr_base 3.1 M flexiblas-openblas-openmp x86_64 3.2.1-2.fc38 copr_base 18 k fontconfig x86_64 2.14.1-1.fc38 copr_base 281 k fonts-filesystem noarch 1:2.0.5-9.fc38 fedora 7.8 k freeglut x86_64 3.4.0-1.fc38 copr_base 155 k freetype x86_64 2.12.1-3.fc38 copr_base 407 k fribidi x86_64 1.0.12-2.fc38 copr_base 89 k gc x86_64 8.2.2-1.fc38 copr_base 110 k gcc-plugin-annobin x86_64 12.2.1-3.fc38 fedora 53 k gl-manpages noarch 1.1-25.20190306.fc38 copr_base 1.0 M glib2 x86_64 2.74.1-2.fc38 fedora 2.7 M glibc-devel x86_64 2.36.9000-11.fc38 fedora 39 k glibc-headers-x86 noarch 2.36.9000-11.fc38 fedora 516 k gnutls x86_64 3.7.8-9.fc38 fedora 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-5.fc38 fedora 18 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-5.fc38 fedora 728 k graphite2 x86_64 1.3.14-10.fc37 fedora 95 k groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M guile22 x86_64 2.2.7-6.fc38 copr_base 6.4 M harfbuzz x86_64 5.3.1-1.fc38 copr_base 811 k hwdata noarch 0.364-1.fc38 copr_base 1.5 M jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k jsoncpp x86_64 1.9.5-3.fc37 fedora 98 k kernel-headers x86_64 6.1.0-0.rc4.git0.1.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-26.fc37 fedora 10 k lcms2 x86_64 2.14-1.fc38 fedora 176 k libICE x86_64 1.0.10-9.fc38 copr_base 71 k libICE-devel x86_64 1.0.10-9.fc38 copr_base 46 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libSM-devel x86_64 1.2.3-11.fc37 fedora 12 k libX11 x86_64 1.8.1-2.fc38 copr_base 648 k libX11-common noarch 1.8.1-2.fc38 copr_base 150 k libX11-devel x86_64 1.8.1-2.fc38 copr_base 939 k libX11-xcb x86_64 1.8.1-2.fc38 copr_base 12 k libXau x86_64 1.0.10-1.fc38 copr_base 32 k libXau-devel x86_64 1.0.10-1.fc38 copr_base 14 k libXdmcp x86_64 1.1.3-9.fc37 fedora 35 k libXext x86_64 1.3.5-1.fc38 fedora 39 k libXext-devel x86_64 1.3.5-1.fc38 fedora 85 k libXfixes x86_64 6.0.0-4.fc38 copr_base 20 k libXfixes-devel x86_64 6.0.0-4.fc38 copr_base 13 k libXfont2 x86_64 2.0.3-13.fc38 copr_base 143 k libXft x86_64 2.3.6-1.fc38 fedora 71 k libXi x86_64 1.8-3.fc37 fedora 39 k libXmu x86_64 1.1.4-1.fc38 fedora 76 k libXrender x86_64 0.9.11-1.fc38 fedora 27 k libXt x86_64 1.2.1-3.fc38 copr_base 181 k libXt-devel x86_64 1.2.1-3.fc38 copr_base 408 k libXxf86vm x86_64 1.1.5-1.fc38 fedora 18 k libb2 x86_64 0.98.1-7.fc38 copr_base 25 k libdrm x86_64 2.4.112-1.fc38 fedora 157 k libdrm-devel x86_64 2.4.112-1.fc38 fedora 159 k libfontenc x86_64 1.1.6-1.fc38 fedora 32 k libgfortran x86_64 12.2.1-3.fc38 fedora 900 k libglvnd x86_64 1:1.5.0-1.fc38 copr_base 133 k libglvnd-core-devel x86_64 1:1.5.0-1.fc38 copr_base 18 k libglvnd-egl x86_64 1:1.5.0-1.fc38 copr_base 36 k libglvnd-gles x86_64 1:1.5.0-1.fc38 copr_base 32 k libglvnd-glx x86_64 1:1.5.0-1.fc38 copr_base 140 k libglvnd-opengl x86_64 1:1.5.0-1.fc38 copr_base 43 k libicu x86_64 71.1-2.fc38 copr_base 10 M libicu-devel x86_64 71.1-2.fc38 copr_base 842 k libimagequant x86_64 2.17.0-3.fc38 copr_base 63 k libjpeg-turbo x86_64 2.1.4-1.fc38 fedora 181 k libmpc x86_64 1.2.1-5.fc38 copr_base 61 k libpciaccess x86_64 0.16-7.fc38 copr_base 27 k libpciaccess-devel x86_64 0.16-7.fc38 copr_base 13 k libpng x86_64 2:1.6.37-13.fc38 copr_base 119 k libqhull_r x86_64 1:7.2.1-11.fc38 copr_base 169 k libquadmath x86_64 12.2.1-3.fc38 fedora 201 k libquadmath-devel x86_64 12.2.1-3.fc38 fedora 42 k libraqm x86_64 0.8.0-2.fc37 fedora 20 k libstdc++-devel x86_64 12.2.1-3.fc38 fedora 2.5 M libtiff x86_64 4.4.0-4.fc38 copr_base 198 k libtool-ltdl x86_64 2.4.7-2.fc37 fedora 37 k libunwind x86_64 1.6.2-5.fc38 copr_base 68 k libuv x86_64 1:1.44.2-2.fc38 copr_base 152 k libwayland-client x86_64 1.21.0-1.fc37 fedora 33 k libwayland-server x86_64 1.21.0-1.fc37 fedora 41 k libwebp x86_64 1.2.4-2.fc38 fedora 278 k libxcb x86_64 1.13.1-10.fc37 fedora 231 k libxcb-devel x86_64 1.13.1-10.fc37 fedora 1.4 M libxcrypt-devel x86_64 4.4.30-1.fc38 copr_base 29 k libxkbfile x86_64 1.1.1-1.fc38 fedora 90 k libxshmfence x86_64 1.3-11.fc38 copr_base 12 k libxslt x86_64 1.1.37-1.fc38 copr_base 185 k mesa-libEGL x86_64 22.2.3-1.fc38 fedora 125 k mesa-libGL x86_64 22.2.3-1.fc38 fedora 176 k mesa-libGL-devel x86_64 22.2.3-1.fc38 fedora 35 k mesa-libGLU x86_64 9.0.1-7.fc38 copr_base 154 k mesa-libGLU-devel x86_64 9.0.1-7.fc38 copr_base 13 k mesa-libgbm x86_64 22.2.3-1.fc38 fedora 45 k mesa-libglapi x86_64 22.2.3-1.fc38 fedora 54 k mpdecimal x86_64 2.5.1-4.fc38 copr_base 102 k ncurses x86_64 6.3-3.20220501.fc38 copr_base 404 k nettle x86_64 3.8-2.fc38 copr_base 414 k openblas x86_64 0.3.21-3.fc38 copr_base 36 k openblas-openmp x86_64 0.3.21-3.fc38 copr_base 5.1 M openjpeg2 x86_64 2.5.0-2.fc38 copr_base 178 k perl-Carp noarch 1.52-489.fc38 copr_base 29 k perl-Class-Struct noarch 0.66-492.fc38 copr_base 26 k perl-DynaLoader x86_64 1.52-492.fc38 copr_base 29 k perl-Encode x86_64 4:3.19-492.fc38 copr_base 1.7 M perl-Errno x86_64 1.36-492.fc38 copr_base 18 k perl-Exporter noarch 5.77-489.fc38 copr_base 32 k perl-Fcntl x86_64 1.15-492.fc38 copr_base 24 k perl-File-Basename noarch 2.85-492.fc38 copr_base 21 k perl-File-Path noarch 2.18-489.fc38 copr_base 36 k perl-File-Temp noarch 1:0.231.100-489.fc38 copr_base 60 k perl-File-stat noarch 1.12-492.fc38 copr_base 21 k perl-Getopt-Long noarch 1:2.52-489.fc38 copr_base 60 k perl-Getopt-Std noarch 1.13-492.fc38 copr_base 19 k perl-HTTP-Tiny noarch 0.082-1.fc38 copr_base 56 k perl-IO x86_64 1.50-492.fc38 copr_base 90 k perl-IPC-Open3 noarch 1.22-492.fc38 copr_base 26 k perl-MIME-Base64 x86_64 3.16-489.fc38 copr_base 31 k perl-POSIX x86_64 2.03-492.fc38 copr_base 101 k perl-PathTools x86_64 3.84-489.fc38 copr_base 85 k perl-Pod-Escapes noarch 1:1.07-489.fc38 copr_base 20 k perl-Pod-Perldoc noarch 3.28.01-490.fc38 copr_base 84 k perl-Pod-Simple noarch 1:3.43-490.fc38 copr_base 216 k perl-Pod-Usage noarch 4:2.03-3.fc38 copr_base 41 k perl-Scalar-List-Utils x86_64 5:1.63-489.fc38 copr_base 73 k perl-SelectSaver noarch 1.02-492.fc38 copr_base 15 k perl-Socket x86_64 4:2.036-1.fc38 copr_base 56 k perl-Storable x86_64 1:3.26-489.fc38 copr_base 97 k perl-Symbol noarch 1.09-492.fc38 copr_base 18 k perl-Term-ANSIColor noarch 5.01-490.fc38 copr_base 48 k perl-Term-Cap noarch 1.17-489.fc37 fedora 22 k perl-Text-ParseWords noarch 3.31-489.fc38 copr_base 17 k perl-Text-Tabs+Wrap noarch 2021.0814-489.fc38 copr_base 23 k perl-Time-Local noarch 2:1.300-489.fc38 copr_base 34 k perl-constant noarch 1.33-490.fc38 copr_base 23 k perl-if noarch 0.61.000-492.fc38 copr_base 17 k perl-interpreter x86_64 4:5.36.0-492.fc38 copr_base 76 k perl-libs x86_64 4:5.36.0-492.fc38 copr_base 2.1 M perl-mro x86_64 1.26-492.fc38 copr_base 32 k perl-overload noarch 1.35-492.fc38 copr_base 49 k perl-overloading noarch 0.02-492.fc38 copr_base 16 k perl-parent noarch 1:0.238-489.fc38 copr_base 14 k perl-podlators noarch 1:4.14-489.fc38 copr_base 112 k perl-subs noarch 1.04-492.fc38 copr_base 15 k perl-vars noarch 1.05-492.fc38 copr_base 16 k pixman x86_64 0.40.0-6.fc37 fedora 277 k pyproject-rpm-macros noarch 1.4.0-1.fc38 fedora 41 k python-pip-wheel noarch 22.2.2-2.fc38 fedora 1.4 M python-rpm-macros noarch 3.11-5.fc38 fedora 19 k python-setuptools-wheel noarch 65.5.0-1.fc38 fedora 715 k python3 x86_64 3.11.0-1.fc38 fedora 27 k python3-appdirs noarch 1.4.4-7.fc37 fedora 24 k python3-brotli x86_64 1.0.9-9.fc37 fedora 319 k python3-cairo x86_64 1.21.0-3.fc37 fedora 124 k python3-contourpy x86_64 1.0.6-1.fc38 fedora 227 k python3-cycler noarch 0.11.0-6.fc37 fedora 21 k python3-dateutil noarch 1:2.8.2-4.fc38 copr_base 350 k python3-fonttools x86_64 4.38.0-1.fc38 fedora 2.5 M python3-fs noarch 2.4.11-12.fc37 fedora 294 k python3-kiwisolver x86_64 1.4.4-1.fc37 fedora 65 k python3-libs x86_64 3.11.0-1.fc38 fedora 9.6 M python3-lxml x86_64 4.9.1-1.fc38 fedora 1.2 M python3-matplotlib-data noarch 3.6.2-1.fc38 fedora 543 k python3-matplotlib-data-fonts noarch 3.6.2-1.fc38 fedora 2.3 M python3-matplotlib-tk x86_64 3.6.2-1.fc38 fedora 53 k python3-munkres noarch 1.1.2-13.fc37 fedora 26 k python3-numpy x86_64 1:1.22.0-7.fc37 fedora 7.3 M python3-numpy-f2py x86_64 1:1.22.0-7.fc37 fedora 413 k python3-olefile noarch 0.46-18.fc38 copr_base 68 k python3-packaging noarch 21.3-7.fc38 fedora 98 k python3-pillow x86_64 9.3.0-2.fc38 fedora 921 k python3-pillow-tk x86_64 9.3.0-2.fc38 fedora 30 k python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k python3-pytz noarch 2022.6-1.fc38 fedora 65 k python3-rpm-generators noarch 13-2.fc37 fedora 30 k python3-rpm-macros noarch 3.11-5.fc38 fedora 14 k python3-scipy x86_64 1.8.1-6.fc37 fedora 20 M python3-six noarch 1.16.0-8.fc37 fedora 42 k python3-tkinter x86_64 3.11.0-1.fc38 fedora 417 k rhash x86_64 1.4.3-1.fc38 copr_base 194 k tcl x86_64 1:8.6.12-3.fc38 copr_base 1.1 M tk x86_64 1:8.6.12-3.fc38 copr_base 1.6 M valgrind x86_64 1:3.20.0-1.fc38 copr_base 4.8 M valgrind-devel x86_64 1:3.20.0-1.fc38 copr_base 49 k vim-filesystem noarch 2:9.0.828-1.fc38 fedora 19 k xkbcomp x86_64 1.4.5-4.fc38 copr_base 100 k xkeyboard-config noarch 2.36-2.fc37 fedora 957 k xml-common noarch 0.6.3-59.fc38 copr_base 31 k xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k xorg-x11-server-common x86_64 1.20.14-8.fc37 fedora 34 k xorg-x11-xauth x86_64 1:1.1.2-2.fc38 copr_base 36 k Transaction Summary ======================================================================================== Install 249 Packages Total size: 209 M Total download size: 82 M Installed size: 878 M Downloading Packages: [SKIPPED] fontconfig-2.14.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] freetype-2.12.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-5.3.1-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] hwdata-0.364-1.fc38.noarch.rpm: Already downloaded [SKIPPED] libICE-1.0.10-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] libICE-devel-1.0.10-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.1-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libX11-devel-1.8.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-xcb-1.8.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXau-1.0.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXau-devel-1.0.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXfixes-6.0.0-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXt-1.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libXt-devel-1.2.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libb2-0.98.1-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-core-devel-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-devel-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-egl-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-gles-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-glx-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libglvnd-opengl-1.5.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libicu-71.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpciaccess-0.16-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpng-1.6.37-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] libuv-1.44.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.30-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxshmfence-1.3-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxslt-1.1.37-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] make-4.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] mpdecimal-2.5.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-6.3-3.20220501.fc38.x86_64.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Carp-1.52-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Class-Struct-0.66-492.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-DynaLoader-1.52-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Encode-3.19-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Errno-1.36-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] perl-Exporter-5.77-489.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-Fcntl-1.15-492.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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boost-serialization-1.78.0-9.fc37.x86_64 boost-stacktrace-1.78.0-9.fc37.x86_64 boost-system-1.78.0-9.fc37.x86_64 boost-test-1.78.0-9.fc37.x86_64 boost-thread-1.78.0-9.fc37.x86_64 boost-timer-1.78.0-9.fc37.x86_64 boost-type_erasure-1.78.0-9.fc37.x86_64 boost-wave-1.78.0-9.fc37.x86_64 cairo-1.17.6-2.fc37.x86_64 cmake-3.25.0-0.5.rc3.fc38.x86_64 cmake-data-3.25.0-0.5.rc3.fc38.noarch cmake-filesystem-3.25.0-0.5.rc3.fc38.x86_64 cmake-rpm-macros-3.25.0-0.5.rc3.fc38.noarch cpp-12.2.1-3.fc38.x86_64 dejavu-sans-fonts-2.37-19.fc37.noarch emacs-filesystem-1:28.1-3.fc37.noarch expat-2.4.8-2.fc37.x86_64 flexiblas-3.2.1-2.fc38.x86_64 flexiblas-netlib-3.2.1-2.fc38.x86_64 flexiblas-openblas-openmp-3.2.1-2.fc38.x86_64 fontconfig-2.14.1-1.fc38.x86_64 fonts-filesystem-1:2.0.5-9.fc38.noarch freeglut-3.4.0-1.fc38.x86_64 freeglut-devel-3.4.0-1.fc38.x86_64 freetype-2.12.1-3.fc38.x86_64 fribidi-1.0.12-2.fc38.x86_64 gc-8.2.2-1.fc38.x86_64 gcc-12.2.1-3.fc38.x86_64 gcc-c++-12.2.1-3.fc38.x86_64 gcc-plugin-annobin-12.2.1-3.fc38.x86_64 gl-manpages-1.1-25.20190306.fc38.noarch glib2-2.74.1-2.fc38.x86_64 glibc-devel-2.36.9000-11.fc38.x86_64 glibc-headers-x86-2.36.9000-11.fc38.noarch gnutls-3.7.8-9.fc38.x86_64 google-noto-fonts-common-20201206^1.git0c78c8329-5.fc38.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-5.fc38.noarch graphite2-1.3.14-10.fc37.x86_64 groff-base-1.22.4-10.fc37.x86_64 guile22-2.2.7-6.fc38.x86_64 harfbuzz-5.3.1-1.fc38.x86_64 hwdata-0.364-1.fc38.noarch jbigkit-libs-2.1-24.fc37.x86_64 jsoncpp-1.9.5-3.fc37.x86_64 kernel-headers-6.1.0-0.rc4.git0.1.fc38.x86_64 langpacks-core-font-en-3.0-26.fc37.noarch lcms2-2.14-1.fc38.x86_64 libICE-1.0.10-9.fc38.x86_64 libICE-devel-1.0.10-9.fc38.x86_64 libSM-1.2.3-11.fc37.x86_64 libSM-devel-1.2.3-11.fc37.x86_64 libX11-1.8.1-2.fc38.x86_64 libX11-common-1.8.1-2.fc38.noarch libX11-devel-1.8.1-2.fc38.x86_64 libX11-xcb-1.8.1-2.fc38.x86_64 libXau-1.0.10-1.fc38.x86_64 libXau-devel-1.0.10-1.fc38.x86_64 libXdmcp-1.1.3-9.fc37.x86_64 libXext-1.3.5-1.fc38.x86_64 libXext-devel-1.3.5-1.fc38.x86_64 libXfixes-6.0.0-4.fc38.x86_64 libXfixes-devel-6.0.0-4.fc38.x86_64 libXfont2-2.0.3-13.fc38.x86_64 libXft-2.3.6-1.fc38.x86_64 libXi-1.8-3.fc37.x86_64 libXi-devel-1.8-3.fc37.x86_64 libXmu-1.1.4-1.fc38.x86_64 libXmu-devel-1.1.4-1.fc38.x86_64 libXrender-0.9.11-1.fc38.x86_64 libXt-1.2.1-3.fc38.x86_64 libXt-devel-1.2.1-3.fc38.x86_64 libXxf86vm-1.1.5-1.fc38.x86_64 libb2-0.98.1-7.fc38.x86_64 libdrm-2.4.112-1.fc38.x86_64 libdrm-devel-2.4.112-1.fc38.x86_64 libfontenc-1.1.6-1.fc38.x86_64 libgfortran-12.2.1-3.fc38.x86_64 libglvnd-1:1.5.0-1.fc38.x86_64 libglvnd-core-devel-1:1.5.0-1.fc38.x86_64 libglvnd-devel-1:1.5.0-1.fc38.x86_64 libglvnd-egl-1:1.5.0-1.fc38.x86_64 libglvnd-gles-1:1.5.0-1.fc38.x86_64 libglvnd-glx-1:1.5.0-1.fc38.x86_64 libglvnd-opengl-1:1.5.0-1.fc38.x86_64 libicu-71.1-2.fc38.x86_64 libicu-devel-71.1-2.fc38.x86_64 libimagequant-2.17.0-3.fc38.x86_64 libjpeg-turbo-2.1.4-1.fc38.x86_64 libmpc-1.2.1-5.fc38.x86_64 libpciaccess-0.16-7.fc38.x86_64 libpciaccess-devel-0.16-7.fc38.x86_64 libpng-2:1.6.37-13.fc38.x86_64 libqhull_r-1:7.2.1-11.fc38.x86_64 libquadmath-12.2.1-3.fc38.x86_64 libquadmath-devel-12.2.1-3.fc38.x86_64 libraqm-0.8.0-2.fc37.x86_64 libstdc++-devel-12.2.1-3.fc38.x86_64 libtiff-4.4.0-4.fc38.x86_64 libtiff-devel-4.4.0-4.fc38.x86_64 libtool-ltdl-2.4.7-2.fc37.x86_64 libunwind-1.6.2-5.fc38.x86_64 libuv-1:1.44.2-2.fc38.x86_64 libwayland-client-1.21.0-1.fc37.x86_64 libwayland-server-1.21.0-1.fc37.x86_64 libwebp-1.2.4-2.fc38.x86_64 libxcb-1.13.1-10.fc37.x86_64 libxcb-devel-1.13.1-10.fc37.x86_64 libxcrypt-devel-4.4.30-1.fc38.x86_64 libxkbfile-1.1.1-1.fc38.x86_64 libxshmfence-1.3-11.fc38.x86_64 libxslt-1.1.37-1.fc38.x86_64 make-1:4.4-1.fc38.x86_64 mesa-libEGL-22.2.3-1.fc38.x86_64 mesa-libGL-22.2.3-1.fc38.x86_64 mesa-libGL-devel-22.2.3-1.fc38.x86_64 mesa-libGLU-9.0.1-7.fc38.x86_64 mesa-libGLU-devel-9.0.1-7.fc38.x86_64 mesa-libgbm-22.2.3-1.fc38.x86_64 mesa-libglapi-22.2.3-1.fc38.x86_64 mpdecimal-2.5.1-4.fc38.x86_64 ncurses-6.3-3.20220501.fc38.x86_64 nettle-3.8-2.fc38.x86_64 openblas-0.3.21-3.fc38.x86_64 openblas-openmp-0.3.21-3.fc38.x86_64 openjpeg2-2.5.0-2.fc38.x86_64 perl-Carp-1.52-489.fc38.noarch perl-Class-Struct-0.66-492.fc38.noarch perl-DynaLoader-1.52-492.fc38.x86_64 perl-Encode-4:3.19-492.fc38.x86_64 perl-Errno-1.36-492.fc38.x86_64 perl-Exporter-5.77-489.fc38.noarch perl-Fcntl-1.15-492.fc38.x86_64 perl-File-Basename-2.85-492.fc38.noarch perl-File-Path-2.18-489.fc38.noarch perl-File-Temp-1:0.231.100-489.fc38.noarch perl-File-stat-1.12-492.fc38.noarch perl-Getopt-Long-1:2.52-489.fc38.noarch perl-Getopt-Std-1.13-492.fc38.noarch perl-HTTP-Tiny-0.082-1.fc38.noarch perl-IO-1.50-492.fc38.x86_64 perl-IPC-Open3-1.22-492.fc38.noarch perl-MIME-Base64-3.16-489.fc38.x86_64 perl-POSIX-2.03-492.fc38.x86_64 perl-PathTools-3.84-489.fc38.x86_64 perl-Pod-Escapes-1:1.07-489.fc38.noarch perl-Pod-Perldoc-3.28.01-490.fc38.noarch perl-Pod-Simple-1:3.43-490.fc38.noarch perl-Pod-Usage-4:2.03-3.fc38.noarch perl-Scalar-List-Utils-5:1.63-489.fc38.x86_64 perl-SelectSaver-1.02-492.fc38.noarch perl-Socket-4:2.036-1.fc38.x86_64 perl-Storable-1:3.26-489.fc38.x86_64 perl-Symbol-1.09-492.fc38.noarch perl-Term-ANSIColor-5.01-490.fc38.noarch perl-Term-Cap-1.17-489.fc37.noarch perl-Text-ParseWords-3.31-489.fc38.noarch perl-Text-Tabs+Wrap-2021.0814-489.fc38.noarch perl-Time-Local-2:1.300-489.fc38.noarch perl-constant-1.33-490.fc38.noarch perl-if-0.61.000-492.fc38.noarch perl-interpreter-4:5.36.0-492.fc38.x86_64 perl-libs-4:5.36.0-492.fc38.x86_64 perl-macros-4:5.36.0-492.fc38.noarch perl-mro-1.26-492.fc38.x86_64 perl-overload-1.35-492.fc38.noarch perl-overloading-0.02-492.fc38.noarch perl-parent-1:0.238-489.fc38.noarch perl-podlators-1:4.14-489.fc38.noarch perl-subs-1.04-492.fc38.noarch perl-vars-1.05-492.fc38.noarch pixman-0.40.0-6.fc37.x86_64 pybind11-devel-2.10.1-1.fc38.x86_64 pyproject-rpm-macros-1.4.0-1.fc38.noarch python-pip-wheel-22.2.2-2.fc38.noarch python-rpm-macros-3.11-5.fc38.noarch python-setuptools-wheel-65.5.0-1.fc38.noarch python3-3.11.0-1.fc38.x86_64 python3-appdirs-1.4.4-7.fc37.noarch python3-brotli-1.0.9-9.fc37.x86_64 python3-cairo-1.21.0-3.fc37.x86_64 python3-contourpy-1.0.6-1.fc38.x86_64 python3-cycler-0.11.0-6.fc37.noarch python3-dateutil-1:2.8.2-4.fc38.noarch python3-devel-3.11.0-1.fc38.x86_64 python3-flaky-3.7.0-9.fc37.noarch python3-fonttools-4.38.0-1.fc38.x86_64 python3-fs-2.4.11-12.fc37.noarch python3-kiwisolver-1.4.4-1.fc37.x86_64 python3-libs-3.11.0-1.fc38.x86_64 python3-lxml-4.9.1-1.fc38.x86_64 python3-matplotlib-3.6.2-1.fc38.x86_64 python3-matplotlib-data-3.6.2-1.fc38.noarch python3-matplotlib-data-fonts-3.6.2-1.fc38.noarch python3-matplotlib-tk-3.6.2-1.fc38.x86_64 python3-munkres-1.1.2-13.fc37.noarch python3-numpy-1:1.22.0-7.fc37.x86_64 python3-numpy-f2py-1:1.22.0-7.fc37.x86_64 python3-olefile-0.46-18.fc38.noarch python3-packaging-21.3-7.fc38.noarch python3-pillow-9.3.0-2.fc38.x86_64 python3-pillow-tk-9.3.0-2.fc38.x86_64 python3-pyparsing-3.0.9-2.fc37.noarch python3-pytz-2022.6-1.fc38.noarch python3-rpm-generators-13-2.fc37.noarch python3-rpm-macros-3.11-5.fc38.noarch python3-scipy-1.8.1-6.fc37.x86_64 python3-setuptools-65.5.0-1.fc38.noarch python3-six-1.16.0-8.fc37.noarch python3-tkinter-3.11.0-1.fc38.x86_64 python3-wheel-1:0.37.1-4.fc37.noarch rhash-1.4.3-1.fc38.x86_64 tcl-1:8.6.12-3.fc38.x86_64 tk-1:8.6.12-3.fc38.x86_64 valgrind-1:3.20.0-1.fc38.x86_64 valgrind-devel-1:3.20.0-1.fc38.x86_64 vim-filesystem-2:9.0.828-1.fc38.noarch xkbcomp-1.4.5-4.fc38.x86_64 xkeyboard-config-2.36-2.fc37.noarch xml-common-0.6.3-59.fc38.noarch xorg-x11-proto-devel-2022.2-2.fc38.noarch xorg-x11-server-Xvfb-1.20.14-8.fc37.x86_64 xorg-x11-server-common-1.20.14-8.fc37.x86_64 xorg-x11-xauth-1:1.1.2-2.fc38.x86_64 zlib-devel-1.2.12-5.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-3.fc38.src.rpm Start: rpmbuild smoldyn-2.67.3-3.fc38.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1658534400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.HBGCai + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (smoldyn-fix_libpaths.patch): + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.qAD0al + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 12.2.1 -- The C compiler identification is GNU 12.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.11 (found version "3.11.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.1") -- [TEST] Found 15 test scripts -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c make[2]: 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-std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 24%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 50%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc 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make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu11 -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 65%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 66%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Linking CXX static library libsmoldyn_static.a /usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c: In function 'cmdlongrangeforce': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4755:82: warning: 'j2' may be used uninitialized [-Wmaybe-uninitialized] 4755 | moleclist->datad4[j2][d]+=force; }}}} | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c:4638:22: note: 'j2' was declared here 4638 | int itct,i,j,j2,ll,d,dim,wrap[DIMMAX],m,duplicate; | ^~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wno-unused-parameter -Wall -Wextra -std=gnu++14 -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu11 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -std=gnu++14 -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -std=gnu++14 -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:556:14: note: in a call to allocation function 'calloc' declared here 556 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn creating build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.cSAs41 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Built target Steve /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py running build_ext /usr/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-3.fc38 --unique-debug-suffix -2.67.3-3.fc38.x86_64 --unique-debug-src-base smoldyn-2.67.3-3.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/bin/smoldyn original debug info size: 4984kB, size after compression: 4572kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3516 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JHCFra + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/lib64/python3.11/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:420 Here: 420 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:705 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:432 Here: 432 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:3014 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:3019 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:3039 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:705 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:402 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1782 Constructing a list of tests /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_actions /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_api /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_connect_func /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_connect_var /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_getters /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_sanity /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2386 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:2429 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1833 Done constructing a list of tests /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:977 Updating test list for fixtures /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:1200 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:1412 Checking test dependency graph... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:1441 Checking test dependency graph end /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 2 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:518 Start 2: test_api /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:777 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:949 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:952 Testing test_api ... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.24 sec /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 3 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:518 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:777 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 3: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:949 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:952 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.46 sec /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 14 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:518 Start 14: test_sanity /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:777 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 14: test_newcursim /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 14: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 14: Testing test_get_err /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:42 14: (, '') /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:949 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:952 Testing test_sanity ... /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.21 sec /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/cmCTest.cxx:306 Current_Time: Nov 09 11:34 UTC /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:441 The following tests passed: /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:446 test_api /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:446 test_biosimulators /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:446 test_sanity /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:606 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.25.0-rc3/Source/CTest/cmCTestTestHandler.cxx:622 Total Test time (real) = 0.92 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-3.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.s9DmbG + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + cp -pr Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + cp -pr README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-3.fc38 smoldyn(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-3.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.20chTn + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + cp -pr docs/BioNetGen docs/CMakeLists.txt docs/Doxyfile.in docs/README.md docs/SmolCrowd docs/SmolEmulate docs/Smoldyn docs/_static docs/build_doxygen docs/conf.py docs/doxygen docs/examples docs/index.rst docs/libSteve docs/python docs/requirements.txt docs/tikz docs/user docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-3.fc38.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.z6gTlz + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-3.fc38 smoldyn-libs(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-3.fc38.x86_64 Provides: smoldyn-libs-devel = 2.67.3-3.fc38 smoldyn-libs-devel(x86-64) = 2.67.3-3.fc38 smoldyn-libs-static = 0:2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-3.fc38.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9jNs0m + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-3.fc38 python3-smoldyn = 2.67.3-3.fc38 python3-smoldyn(x86-64) = 2.67.3-3.fc38 python3.11-smoldyn = 2.67.3-3.fc38 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-3.fc38 Processing files: smoldyn-debugsource-2.67.3-3.fc38.x86_64 Provides: smoldyn-debugsource = 2.67.3-3.fc38 smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-3.fc38.x86_64 Provides: debuginfo(build-id) = d6a75dc180c271ded7ff997df63102c09cd6c32e smoldyn-debuginfo = 2.67.3-3.fc38 smoldyn-debuginfo(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Processing files: smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64 Provides: debuginfo(build-id) = 138388937137a498bd2605a2c5cfafbccddd290a libsmoldyn_shared.so.2.67.3-2.67.3-3.fc38.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-3.fc38 smoldyn-libs-debuginfo(x86-64) = 2.67.3-3.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-3.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-3.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-3.fc38.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.1DnA6V + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-3.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.6c4BJv + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild smoldyn-2.67.3-3.fc38.src.rpm Finish: build phase for smoldyn-2.67.3-3.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1667993433.618873/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-3.fc38.src.rpm) Config(child) 2 minutes 24 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool