Mock Version: 3.3 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1668210476.437250/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7a0bd831f1284639986ef3271bb3817c', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1668210476.437250/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1667001600 Wrote: /builddir/build/SRPMS/nco-5.1.1-1.fc38.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1668210476.437250/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd1e3b22685314adab0b08727ee9ffeb5', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1668210476.437250/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.niqppvct:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/nco.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1667001600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NUzlrd + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf nco-5.1.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/nco-5.1.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd nco-5.1.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (nco-install_C_headers.patch):' Patch #0 (nco-install_C_headers.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .install_C_headers --fuzz=0 patching file src/nco/Makefile.in Hunk #1 succeeded at 783 (offset 16 lines). + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dritW6 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nco-5.1.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-10-28 13:17:41.000000000 +0000 +++ ./configure 2022-11-11 23:49:56.966046491 +0000 @@ -1957,7 +1957,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2022-11-11 23:49:56.966046491 +0000 +++ ./configure 2022-11-11 23:49:56.987046566 +0000 @@ -8653,7 +8653,7 @@ # Transform an extracted symbol line into a proper C declaration. # Some systems (esp. on ia64) link data and code symbols differently, # so use this general approach. -lt_cv_sys_global_symbol_to_cdecl="sed -n"\ +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" $lt_cdecl_hook\ " -e 's/^T .* \(.*\)$/extern int \1();/p'"\ " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'" @@ -23005,7 +23005,7 @@ compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`' GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`' -lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`' +lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`' + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./autobld/config.sub ++ basename ./autobld/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./autobld/config.sub '/usr/lib/rpm/redhat/config.sub' -> './autobld/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./autobld/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./autobld/config.guess ++ basename ./autobld/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./autobld/config.guess '/usr/lib/rpm/redhat/config.guess' -> './autobld/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./autobld/ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info HAVE_ANTLR=yes --disable-dependency-tracking --includedir=/usr/include/nco checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking target system type... x86_64-redhat-linux-gnu ./configure: line 3542: git: command not found checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for x86_64-redhat-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking whether yytext is a pointer... yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... no checking for ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ./configure: line 8659: -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p': No such file or directory ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for creat... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for egrep... (cached) /usr/bin/grep -E checking for fcntl.h... yes checking for getopt.h... yes checking for libintl.h... yes checking for limits.h... yes checking for locale.h... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking for gcc options needed to detect all undeclared functions... none needed checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking for netcdf_mem.h... yes checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... no checking for acosf... no checking for asinf... no checking for atanf... no checking for atan2f... no checking for cosf... no checking for expf... no checking for fabsf... no checking for fmodf... no checking for log10f... no checking for logf... no checking for powf... no checking for sinf... no checking for sqrtf... no checking for tanf... no checking for erff... no checking for erfcf... no checking for gammaf... no checking for acoshf... no checking for asinhf... no checking for atanhf... no checking for coshf... no checking for sinhf... no checking for tanhf... no checking for ceilf... no checking for floorf... no checking for nearbyint... no checking for rint... no checking for round... no checking for trunc... no checking for nearbyintf... no checking for rintf... no checking for roundf... no checking for truncf... no checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOS build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... yes configure: antlr library was found checking for antlr/CommonToken.hpp... yes INFO: ANTLR development support found---will build nco++ directory and ncap2 checking whether NCO C++ interface library libnco_c++ should be built... no ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled ######################################## # Testing for CCR support # ######################################## checking where to put HDF5 plugins... . checking whether Community Codec Repository library should be used... no checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## WARNING: Requested both UDUnits and UDUnits2 support---overriding UDUnits Will attempt to build NCO with UDUnits support from libudunits2, not from libudunits checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... yes checking for /usr/include/udunits2.h... no checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... no checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for /opt/local/lib/libudunits2.dylib... no checking for /usr/share/udunits/udunits2.xml... yes configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=6.8 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 CXX.................. g++ CXXFLAGS............. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ENABLE_CCR........... no ENABLE_DAP........... yes ENABLE_GSL........... yes ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... yes HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HDF5_PLUGIN_PATH..... . HOST................. HOSTNAME............. d1e3b22685314adab0b08727ee9ffeb5 LDFLAGS.............. -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes LIBS................. -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. x86_64-redhat-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in data make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -o big.nc big.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /builddir/build/BUILD/nco-5.1.1/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[2]: /builddir/build/BUILD/nco-5.1.1/src/nco/ncks: No such file or directory make[2]: [Makefile:586: in_4c.nc] Error 127 (ignored) make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -lb -o "file://in_zarr4#mode=nczarr,file" in_zarr4.cdl ncgen: NetCDF: NCZarr error (../../ncgen/genbin.c:genbin_netcdf:168) make[2]: [Makefile:658: in_zarr4] Error 1 (ignored) make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' ln -s -f in_zarr4 h0001 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' ln -s -f in_zarr4 h0002 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' ln -s -f in_zarr4 h0003 make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' Making all in src Making all in nco make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncatted.o ncatted.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_aux.lo nco_aux.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_aux.c -o nco_aux.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_bnr.lo nco_bnr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_bnr.c -o nco_bnr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_att_utl.lo nco_att_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_att_utl.c -o nco_att_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cln_utl.lo nco_cln_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cln_utl.c -o nco_cln_utl.o >/dev/null 2>&1 nco_cln_utl.c: In function 'nco_cln_var_prs': nco_cln_utl.c:1339:27: warning: 'mss_val_flt' may be used uninitialized [-Wmaybe-uninitialized] 1339 | if(var->has_mss_val && var->val.fp[idx] == mss_val_flt){ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_cln_utl.c:1335:11: note: 'mss_val_flt' was declared here 1335 | float mss_val_flt; | ^~~~~~~~~~~ nco_cln_utl.c:1320:27: warning: 'mss_val_dbl' may be used uninitialized [-Wmaybe-uninitialized] 1320 | if(var->has_mss_val && var->val.dp[idx] == mss_val_dbl){ | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_cln_utl.c:1316:12: note: 'mss_val_dbl' was declared here 1316 | double mss_val_dbl; | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cnf_dmn.lo nco_cnf_dmn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnf_dmn.c -o nco_cnf_dmn.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cnf_typ.lo nco_cnf_typ.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnf_typ.c -o nco_cnf_typ.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cnk.lo nco_cnk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnk.c -o nco_cnk.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' In file included from /usr/include/stdio.h:906, from nco_cnk.h:18, from nco_cnk.c:45: In function 'fprintf', inlined from 'nco_cnk_sz_set_trv' at nco_cnk.c:1326:8: /usr/include/bits/stdio2.h:79:10: warning: 'prt_sum' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_cnk.c: In function 'nco_cnk_sz_set_trv': nco_cnk.c:1301:12: note: 'prt_sum' was declared here 1301 | size_t prt_sum; /* [nbr] Partial sum (sum of coefficients times powers of two for higher powers */ | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cnv_arm.lo nco_cnv_arm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnv_arm.c -o nco_cnv_arm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_crt.lo nco_crt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_crt.c -fPIC -DPIC -o .libs/nco_crt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_crt.c -o nco_crt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_cnv_csm.lo nco_cnv_csm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_cnv_csm.c -o nco_cnv_csm.o >/dev/null 2>&1 In file included from /usr/include/stdio.h:906, from nco_cnv_csm.h:17, from nco_cnv_csm.c:10: In function 'fprintf', inlined from 'nco_cnv_cf_cll_mth_add' at nco_cnv_csm.c:504:48: /usr/include/bits/stdio2.h:79:10: warning: 'cll_mth_clm' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_cnv_csm.c: In function 'nco_cnv_cf_cll_mth_add': nco_cnv_csm.c:436:9: note: 'cll_mth_clm' was declared here 436 | char *cll_mth_clm; /* [sng] Cell methods for climatology */ | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_dbg.lo nco_dbg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_dbg.c -o nco_dbg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_dmn_utl.lo nco_dmn_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_dmn_utl.c -o nco_dmn_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_ctl.lo nco_ctl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ctl.c -o nco_ctl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_flt.lo nco_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_flt.c -fPIC -DPIC -o .libs/nco_flt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_flt.c -o nco_flt.o >/dev/null 2>&1 nco_flt.c: In function 'nco_flt_hdf5_prs': nco_flt.c:395:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short int[1]' [-Warray-bounds] 395 | u32_lst[u32_nbr++]=*ui32p; | ^~~~~~ nco_flt.c:392:15: note: object 'sht_foo' of size 2 392 | short sht_foo=(short)strtol(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10); | ^~~~~~~ nco_flt.c:389:28: warning: array subscript 'unsigned int[0]' is partly outside array bounds of 'short unsigned int[1]' [-Warray-bounds] 389 | u32_lst[u32_nbr++]=*ui32p; | ^~~~~~ nco_flt.c:386:24: note: object 'usht_foo' of size 2 386 | unsigned short usht_foo=(unsigned short)strtoul(prm_lst[prm_idx],&sng_cnv_rcd,NCO_SNG_CNV_BASE10); | ^~~~~~~~ nco_flt.c:330:37: warning: '%s' directive argument is null [-Wformat-overflow=] 330 | (void)fprintf(stderr,"%s: ERROR %s reports supplied filter string is empty\n",nco_prg_nm_get(),flt_sng); | ^~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_fl_utl.lo nco_fl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_fl_utl.c -o nco_fl_utl.o >/dev/null 2>&1 nco_fl_utl.c: In function 'nco_fl_nm_prs': nco_fl_utl.c:1660:45: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 1660 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~ nco_fl_utl.c:1660:41: note: directive argument in the range [-2147483648, 2147483645] 1660 | (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from nco_fl_utl.h:26, from nco_fl_utl.c:10: In function 'sprintf', inlined from 'nco_fl_nm_prs' at nco_fl_utl.c:1660:8: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 9 and 19 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:535, from nco_fl_utl.h:28: In function 'strncpy', inlined from 'nco_fl_mk_lcl' at nco_fl_utl.c:1339:13: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' destination unchanged after copying no bytes [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ nco_fl_utl.c: In function 'nco_fl_ncz2psx': nco_fl_utl.c:2491:29: warning: 'psx_fll_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2491 | if(psx_fll) psx_fll_lcl=(char *)strdup(psx_fll_lcl); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_fl_utl.c:2414:11: note: 'psx_fll_lcl' was declared here 2414 | char *psx_fll_lcl; /* O [sng] Full POSIX path with filename, suitable for file stat() */ | ^~~~~~~~~~~ nco_fl_utl.c:2503:25: warning: 'psx_drc_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2503 | if(psx_drc) *psx_drc=psx_drc_lcl; | ~~~~~~~~^~~~~~~~~~~~ nco_fl_utl.c:2415:11: note: 'psx_drc_lcl' was declared here 2415 | char *psx_drc_lcl; /* O [sng] POSIX path only, no filename, suitable for directory stat() */ | ^~~~~~~~~~~ nco_fl_utl.c:2504:25: warning: 'psx_stb_lcl' may be used uninitialized [-Wmaybe-uninitialized] 2504 | if(psx_stb) *psx_stb=psx_stb_lcl; | ~~~~~~~~^~~~~~~~~~~~ nco_fl_utl.c:2416:11: note: 'psx_stb_lcl' was declared here 2416 | char *psx_stb_lcl; /* O [sng] POSIX filename (stub) without path or suffix, suitable for netCDF dataset name */ | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_grp_trv.lo nco_grp_trv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_grp_trv.c -o nco_grp_trv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_kd.lo nco_kd.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_kd.c -fPIC -DPIC -o .libs/nco_kd.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_kd.c -o nco_kd.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_lmt.lo nco_lmt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_lmt.c -o nco_lmt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_lst_utl.c -o nco_lst_utl.o >/dev/null 2>&1 nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:89: warning: unknown escape sequence: '\.' 38 | const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ | ^ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_map.lo nco_map.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_map.c -o nco_map.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_map.c: In function 'nco_map_mk': nco_map.c:301:12: warning: variable 'flg_grd_out_rct' set but not used [-Wunused-but-set-variable] 301 | nco_bool flg_grd_out_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~~ nco_map.c:299:12: warning: variable 'flg_grd_in_rct' set but not used [-Wunused-but-set-variable] 299 | nco_bool flg_grd_in_rct=False; /* [flg] Rectangular coordinates */ | ^~~~~~~~~~~~~~ nco_map.c:230:7: warning: variable 'bnd_nbr_out' set but not used [-Wunused-but-set-variable] 230 | int bnd_nbr_out; /* [nbr] Number of vertices for destination grid coordinates */ | ^~~~~~~~~~~ nco_map.c:212:8: warning: variable 'col_nbr_in' set but not used [-Wunused-but-set-variable] 212 | long col_nbr_in; /* [idx] Number of columns in source grid */ | ^~~~~~~~~~ nco_map.c:211:7: warning: variable 'bnd_nbr_in' set but not used [-Wunused-but-set-variable] 211 | int bnd_nbr_in; /* [nbr] Number of vertices for source grid coordinates */ | ^~~~~~~~~~ nco_map.c:401:15: warning: 'lon_nbr_in' may be used uninitialized [-Wmaybe-uninitialized] 401 | if(idx%lon_nbr_in == 0) idx_tst=idx; | ~~~^~~~~~~~~~~ nco_map.c:213:8: note: 'lon_nbr_in' was declared here 213 | long lon_nbr_in; /* [idx] Number of longitudes in source grid */ | ^~~~~~~~~~ nco_map.c:417:15: warning: 'lon_nbr_out' may be used uninitialized [-Wmaybe-uninitialized] 417 | if(idx%lon_nbr_out == 0) idx_tst=idx; | ~~~^~~~~~~~~~~~ nco_map.c:232:8: note: 'lon_nbr_out' was declared here 232 | long lon_nbr_out; /* [nbr] Number of longitudes in destination grid */ | ^~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_grp_utl.c -o nco_grp_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_md5.lo nco_md5.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_md5.c -o nco_md5.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_mmr.lo nco_mmr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mmr.c -o nco_mmr.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mss_val.c -o nco_mss_val.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_mta.lo nco_mta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_mta.c -o nco_mta.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_msa.lo nco_msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_msa.c -o nco_msa.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_omp.c -o nco_omp.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_pck.lo nco_pck.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_pck.c -o nco_pck.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_pck.c: In function 'nco_pck_map_get': nco_pck.c:160:88: warning: '%s' directive argument is null [-Wformat-overflow=] 160 | (void)fprintf(stderr,"%s: ERROR %s reports empty user-specified packing map string %s\n",nco_prg_nm,fnc_nm,nco_pck_map_sng); | ^~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_netcdf.lo nco_netcdf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_netcdf.c -o nco_netcdf.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_ply.lo nco_ply.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ply.c -fPIC -DPIC -o .libs/nco_ply.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ply.c -o nco_ply.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_ply_lst.lo nco_ply_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ply_lst.c -fPIC -DPIC -o .libs/nco_ply_lst.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ply_lst.c -o nco_ply_lst.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_ply_lst.c: In function 'nco_poly_lst_mk_vrl_crt': nco_ply_lst.c:608:10: warning: variable 'size' set but not used [-Wunused-but-set-variable] 608 | kd_box size; | ^~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_ppc.lo nco_ppc.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_ppc.c -o nco_ppc.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_ppc.c: In function 'nco_ppc_bitmask': nco_ppc.c:1081:53: warning: 'u64_ptr' may be used uninitialized [-Wmaybe-uninitialized] 1081 | if(op1.dp[idx] != mss_val_cmp_dbl && u64_ptr[idx] != 0ULL) /* Never quantize upwards floating point values of zero */ | ~~~~~~~^~~~~ nco_ppc.c:678:27: note: 'u64_ptr' was declared here 678 | unsigned long long int *u64_ptr; | ^~~~~~~ nco_ppc.c:816:51: warning: 'u32_ptr' may be used uninitialized [-Wmaybe-uninitialized] 816 | if(op1.fp[idx] != mss_val_cmp_flt) u32_ptr[idx]&=msk_f32_u32_zro; | ~~~~~~~^~~~~ nco_ppc.c:674:17: note: 'u32_ptr' was declared here 674 | unsigned int *u32_ptr; | ^~~~~~~ nco_ppc.c:1021:55: warning: 'mss_val_cmp_flt' may be used uninitialized [-Wmaybe-uninitialized] 1021 | if(op1.fp[idx] != 0.0f && op1.fp[idx] != 1.0f && op1.fp[idx] != mss_val_cmp_flt){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_ppc.c:662:9: note: 'mss_val_cmp_flt' was declared here 662 | float mss_val_cmp_flt; /* Missing value for comparison to single precision values */ | ^~~~~~~~~~~~~~~ nco_ppc.c:1169:11: warning: 'mss_val_cmp_dbl' may be used uninitialized [-Wmaybe-uninitialized] 1169 | if(op1.dp[idx] != mss_val_cmp_dbl){ | ^ nco_ppc.c:660:10: note: 'mss_val_cmp_dbl' was declared here 660 | double mss_val_cmp_dbl; /* Missing value for comparison to double precision values */ | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rec_var.c -o nco_rec_var.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_prn.c -o nco_prn.o >/dev/null 2>&1 nco_prn.c: In function 'nco_prn_var_val_lmt': nco_prn.c:1644:53: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] 1644 | (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:906, from nco_prn.h:22, from nco_prn.c:10: In function 'sprintf', inlined from 'nco_prn_var_val_lmt' at nco_prn.c:1644:10: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 19 and 118 bytes into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_prn.c: In function 'nco_prn_var_dfn': nco_prn.c:1922:34: warning: 'vln_lng_avg' may be used uninitialized [-Wmaybe-uninitialized] 1922 | if(cls_typ == NC_VLEN) (void)fprintf(fp_out,"%*s%s size (RAM) = %s = %li*%g*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,sz_sng,var_sz,vln_lng_avg,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); else (void)fprintf(fp_out,"%*s%s size (RAM) = %s = %li*%lu = %lu bytes\n",prn_ndn,spc_sng,var_trv->nm,sz_sng,var_sz,(unsigned long)nco_typ_lng_udt(nc_id,bs_typ),(unsigned long)ram_sz_crr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:1721:9: note: 'vln_lng_avg' was declared here 1721 | float vln_lng_avg; /* [nbr] Mean vlen length */ | ^~~~~~~~~~~ nco_prn.c: In function 'nco_prn_att': nco_prn.c:807:15: warning: 'mbr_val' may be used uninitialized [-Wmaybe-uninitialized] 807 | rcd=nco_inq_enum_ident(grp_id,att[idx].type,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:478:15: note: 'mbr_val' was declared here 478 | long long mbr_val; | ^~~~~~~ nco_prn.c: In function 'nco_prn_var_val_trv': nco_prn.c:2572:74: warning: 'vln_lngm1' may be used uninitialized [-Wmaybe-uninitialized] 2572 | case NC_UINT64: for(vln_idx=0;vln_idxtype,mbr_val,mbr_nm); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nco_prn.c:2384:15: note: 'mbr_val' was declared here 2384 | long long mbr_val; | ^~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_rth_flt.lo nco_rth_flt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rth_flt.c -o nco_rth_flt.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_rth_utl.lo nco_rth_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rth_utl.c -o nco_rth_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_scl_utl.c -o nco_scl_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_s1d.lo nco_s1d.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_s1d.c -fPIC -DPIC -o .libs/nco_s1d.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_s1d.c -o nco_s1d.o >/dev/null 2>&1 nco_s1d.c: In function 'nco_s1d_unpack': nco_s1d.c:383:9: warning: variable 'lon_dmn_nm_out' set but not used [-Wunused-but-set-variable] 383 | char *lon_dmn_nm_out; | ^~~~~~~~~~~~~~ nco_s1d.c:382:9: warning: variable 'lat_dmn_nm_out' set but not used [-Wunused-but-set-variable] 382 | char *lat_dmn_nm_out; | ^~~~~~~~~~~~~~ nco_s1d.c:353:10: warning: variable 'grd_sz_in' set but not used [-Wunused-but-set-variable] 353 | size_t grd_sz_in; /* [nbr] Number of elements in single layer of input grid */ | ^~~~~~~~~ nco_s1d.c:45:9: warning: variable 'fl_out' set but not used [-Wunused-but-set-variable] 45 | char *fl_out; | ^~~~~~ nco_s1d.c:857:45: warning: 'fl_tpl' may be used uninitialized [-Wmaybe-uninitialized] 857 | if(FL_RTR_RMT_LCN && RM_RMT_FL_PST_PRC) (void)nco_fl_rm(fl_tpl); | ^~~~~~~~~~~~~~~~~~~~~~~ nco_s1d.c:46:9: note: 'fl_tpl' was declared here 46 | char *fl_tpl; /* [sng] Template file (contains horizontal grid) */ | ^~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_scm.lo nco_scm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_scm.c -o nco_scm.o >/dev/null 2>&1 In file included from /usr/include/string.h:535, from nco_scm.h:22, from nco_scm.c:10: In function 'strncpy', inlined from 'cvs_vrs_prs' at nco_scm.c:83:14: /usr/include/bits/string_fortified.h:95:10: warning: 'strncpy' offset 7 is out of the bounds [0, 7] of object 'cvs_Name' with type 'char[7]' [-Warray-bounds] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ nco_scm.c: In function 'cvs_vrs_prs': nco_scm.c:34:8: note: 'cvs_Name' declared here 34 | char cvs_Name[]="$Name$"; | ^~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sld.c -o nco_sld.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sng_utl.c -o nco_sng_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_sng_utl.c: In function 'nm2sng_cdl': nco_sng_utl.c:270:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 270 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In file included from /usr/include/stdio.h:906, from nco_sng_utl.h:21, from nco_sng_utl.c:10: In function 'snprintf', inlined from 'nm2sng_cdl' at nco_sng_utl.c:270:2: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_sng_utl.c: In function 'nm2sng_fl': nco_sng_utl.c:425:41: warning: '__snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 425 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); | ^ In function 'snprintf', inlined from 'nm2sng_fl' at nco_sng_utl.c:425:2: /usr/include/bits/stdio2.h:54:10: note: '__snprintf_chk' output 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_sph.lo nco_sph.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sph.c -fPIC -DPIC -o .libs/nco_sph.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_sph.c -o nco_sph.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' nco_sph.c: In function 'nco_sph_seg_int_old': nco_sph.c:508:10: warning: variable 'nx_ci' set but not used [-Wunused-but-set-variable] 508 | double nx_ci; | ^~~~~ nco_sph.c:506:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable] 506 | double nx3; | ^~~ nco_sph.c:505:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 505 | double nx2; | ^~~ nco_sph.c: In function 'nco_sph_seg_parallel': nco_sph.c:1426:10: warning: variable 'nx3' set but not used [-Wunused-but-set-variable] 1426 | double nx3; | ^~~ nco_sph.c:1425:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 1425 | double nx2; | ^~~ nco_sph.c:1424:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 1424 | double nx1; | ^~~ nco_sph.c: In function 'nco_sph_seg_vrt_int': nco_sph.c:1836:10: warning: variable 'nx_av' set but not used [-Wunused-but-set-variable] 1836 | double nx_av; | ^~~~~ nco_sph.c:1835:10: warning: variable 'nx_ab' set but not used [-Wunused-but-set-variable] 1835 | double nx_ab; | ^~~~~ nco_sph.c: In function 'nco_sph_is_convex': nco_sph.c:2469:8: warning: variable 'n1' set but not used [-Wunused-but-set-variable] 2469 | double n1; | ^~ nco_sph.c: In function 'nco_rll_intersect': nco_sph.c:3302:10: warning: variable 'nx2' set but not used [-Wunused-but-set-variable] 3302 | double nx2; | ^~~ nco_sph.c:3301:10: warning: variable 'nx1' set but not used [-Wunused-but-set-variable] 3301 | double nx1; | ^~~ In file included from /usr/include/stdio.h:906, from nco_sph.h:61, from nco_sph.c:49: In function 'fprintf', inlined from 'nco_sph_seg_int_old' at nco_sph.c:584:5: /usr/include/bits/stdio2.h:79:10: warning: 'nx_ai' may be used uninitialized [-Wmaybe-uninitialized] 79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ nco_sph.c: In function 'nco_sph_seg_int_old': nco_sph.c:507:10: note: 'nx_ai' was declared here 507 | double nx_ai; | ^~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_srm.lo nco_srm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_srm.c -o nco_srm.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_avg.c -o nco_var_avg.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_rgr.c -o nco_rgr.o >/dev/null 2>&1 nco_rgr.c: In function 'nco_ntp_vrt._omp_fn.0': nco_rgr.c:2147:21: warning: 'FIRST_WARNING_LHS' may be used uninitialized [-Wmaybe-uninitialized] 2147 | if(FIRST_WARNING_LHS) (void)fprintf(fp_stdout,"%s: INFO %s geopotential height extrapolated upward towards space using hypsometric equation with constant global mean virtual temperature = %g for variable %s\n",nco_prg_nm_get(),fnc_nm,tpt_vrt_avg,var_nm); | ^ nco_rgr.c:2050:20: note: 'FIRST_WARNING_LHS' was declared here 2050 | nco_bool FIRST_WARNING_LHS; /* [flg] First warning for LHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c:2203:21: warning: 'FIRST_WARNING_RHS' may be used uninitialized [-Wmaybe-uninitialized] 2203 | if(FIRST_WARNING_RHS) (void)fprintf(fp_stdout,"%s: INFO %s temperature extrapolated toward/into surface assuming constant moist adiabatic lapse rate = %g K/(100 mb) for variable %s\n",nco_prg_nm_get(),fnc_nm,gamma_moist*10000.0,var_nm); | ^ nco_rgr.c:2051:20: note: 'FIRST_WARNING_RHS' was declared here 2051 | nco_bool FIRST_WARNING_RHS; /* [flg] First warning for RHS extrapolation */ | ^~~~~~~~~~~~~~~~~ nco_rgr.c:2086:35: warning: 'dat_in_mnt' may be used uninitialized [-Wmaybe-uninitialized] 2086 | dat_in_mnt[in_idx]=dat_in[in_nbr-in_idx-1]; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:1996:19: note: 'dat_in_mnt' was declared here 1996 | double *dat_in_mnt; /* Input data (to be interpolated) reversed if necessary along with input grid */ | ^~~~~~~~~~ nco_rgr.c:2085:35: warning: 'crd_in_mnt' may be used uninitialized [-Wmaybe-uninitialized] 2085 | crd_in_mnt[in_idx]=crd_in[in_nbr-in_idx-1]; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:1994:19: note: 'crd_in_mnt' was declared here 1994 | double *crd_in_mnt; /* Input vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~ nco_rgr.c:2133:39: warning: 'dat_out_mnt' may be used uninitialized [-Wmaybe-uninitialized] 2133 | dat_out_mnt[out_idx]=dat_in_mnt[0]; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ nco_rgr.c:1997:19: note: 'dat_out_mnt' was declared here 1997 | double *dat_out_mnt; /* Output data (interpolated) reversed if necessary along with output grid */ | ^~~~~~~~~~~ nco_rgr.c:1995:19: warning: 'crd_out_mnt' may be used uninitialized [-Wmaybe-uninitialized] 1995 | double *crd_out_mnt; /* Output vertical coordinate reversed if necessary to be monotonically increasing */ | ^~~~~~~~~~~ nco_rgr.c: In function 'nco_rgr_ini': nco_rgr.c:513:9: warning: 'cnv_nbr' may be used uninitialized [-Wmaybe-uninitialized] 513 | if(cnv_nbr != 4) cnv_nbr=sscanf(rgr_lst[rgr_var_idx].val,"%lf,%lf,%lf,%lf",&rgr->lon_wst,&rgr->lon_est,&rgr->lat_sth,&rgr->lat_nrt); | ^ nco_rgr.c:249:7: note: 'cnv_nbr' was declared here 249 | int cnv_nbr; /* [nbr] Number of elements converted by sscanf() */ | ^~~~~~~ nco_rgr.c: In function 'nco_ntp_vrt': nco_rgr.c:1434:68: warning: 'lev_in_min' may be used uninitialized [-Wmaybe-uninitialized] 1434 | for(size_t idx_in=0;idx_inlev_nm_out) lev_nm_out=(char *)strdup(plev_nm_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ nco_rgr.c:936:9: note: 'plev_nm_in' was declared here 936 | char *plev_nm_in; /* [sng] Pure-pressure coordnate name */ | ^~~~~~~~~~ nco_rgr.c:1479:26: warning: 'dmn_nbr_out' may be used uninitialized [-Wmaybe-uninitialized] 1479 | for(dmn_idx=0;dmn_idx/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_scv.c -o nco_var_scv.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_rth.c -o nco_var_rth.o >/dev/null 2>&1 nco_var_rth.c: In function 'nco_var_sbt': nco_var_rth.c:3726:25: warning: 'tm_srt' may be used uninitialized [-Wmaybe-uninitialized] 3726 | tm_drn=1.0e6*(tm_end-tm_srt)/CLOCKS_PER_SEC; | ~~~~~~~^~~~~~~~ nco_var_rth.c:3539:11: note: 'tm_srt' was declared here 3539 | clock_t tm_srt; | ^~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o nco_var_utl.lo nco_var_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c nco_var_utl.c -o nco_var_utl.o >/dev/null 2>&1 make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncbo.o ncbo.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncecat.o ncecat.c ncecat.c: In function 'main': ncecat.c:842:17: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 842 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); | ^ ncecat.c:842:45: note: length computed here 842 | gpe_arg=strncpy(gpe_arg,stb_srt_psn,strlen(stb_srt_psn)-sfx_lng); | ^~~~~~~~~~~~~~~~~~~ ncecat.c:800:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 800 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~ ncecat.c:800:29: note: directive argument in the range [0, 2147483646] 800 | sprintf(grp_out_sfx,"%02d",fl_idx); | ^~~~~~ In file included from /usr/include/stdio.h:906, from ncecat.c:46: In function 'sprintf', inlined from 'main' at ncecat.c:800:9: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncecat.c: In function 'main': ncecat.c:218:10: warning: 'grp_out_lng' may be used uninitialized [-Wmaybe-uninitialized] 218 | size_t grp_out_lng; /* [nbr] Length of original, canonicalized GPE specification filename component */ | ^~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncflint.o ncflint.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncpdq.o ncpdq.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncks.o ncks.c ncks.c: In function 'main': ncks.c:198:8: warning: 'in_id_arr' may be used uninitialized [-Wmaybe-uninitialized] 198 | int *in_id_arr; /* [id] netCDF file IDs used by OpenMP code */ | ^~~~~~~~~ ncks.c:1563:51: warning: 'fl_lst_in' may be used uninitialized [-Wmaybe-uninitialized] 1563 | if(fl_lst_in && fl_lst_abb == NULL) fl_lst_in=nco_sng_lst_free(fl_lst_in,fl_nbr); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncks.c:124:10: note: 'fl_lst_in' was declared here 124 | char **fl_lst_in; | ^~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncrename.o ncrename.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncwa.o ncwa.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncra.o ncra.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncap_utl.o ncap_utl.c make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -c -o ncap_lex.o ncap_lex.c ncap_lex.c:2978:16: warning: 'input' defined but not used [-Wunused-function] 2978 | #else | ^ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:611:34: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 611 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:906, from ncap_lex.c:277: In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:611:13: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:587:36: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] 587 | (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:587:8: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 98 or more bytes (assuming 353) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ncap_lex.l: In function 'nco_yylex': ncap_lex.l:634:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] 634 | (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In function 'sprintf', inlined from 'nco_yylex' at ncap_lex.l:634:13: /usr/include/bits/stdio2.h:30:10: note: '__sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -release 5.1.1 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o libnco.la -rpath /usr/lib64 nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_flt.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/12/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_flt.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_s1d.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib64 -lnetcdf -lcurl -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/x86_64-redhat-linux/12 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-redhat-linux/12/crtendS.o /usr/lib/gcc/x86_64-redhat-linux/12/../../../../lib64/crtn.o -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -g -grecord-gcc-switches -fstack-protector-strong -m64 -mtune=generic -fopenmp -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -Wl,--build-id=sha1 -fopenmp -Wl,-soname -Wl,libnco-5.1.1.so -o .libs/libnco-5.1.1.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-5.1.1.so" "libnco.so") libtool: link: ar cru .libs/libnco.a nco_att_utl.o nco_aux.o nco_bnr.o nco_cln_utl.o nco_cnf_dmn.o nco_cnf_typ.o nco_cnk.o nco_cnv_arm.o nco_cnv_csm.o nco_crt.o nco_ctl.o nco_dbg.o nco_dmn_utl.o nco_fl_utl.o nco_flt.o nco_grp_utl.o nco_grp_trv.o nco_kd.o nco_lmt.o nco_lst_utl.o nco_map.o nco_md5.o nco_mmr.o nco_msa.o nco_mss_val.o nco_mta.o nco_netcdf.o nco_omp.o nco_pck.o nco_ply.o nco_ply_lst.o nco_ppc.o nco_prn.o nco_rec_var.o nco_rgr.o nco_rth_flt.o nco_rth_utl.o nco_scl_utl.o nco_s1d.o nco_scm.o nco_sld.o nco_sng_utl.o nco_sph.o nco_srm.o nco_var_avg.o nco_var_lst.o nco_var_rth.o nco_var_scv.o nco_var_utl.o libtool: link: ranlib .libs/libnco.a libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) In function 'strncpy', inlined from 'cvs_vrs_prs' at nco_scm.c:83:14: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' reading between 1 and 2147483647 bytes from a region of size 0 [-Wstringop-overread] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^ nco_scm.c: In function 'cvs_vrs_prs': nco_scm.c:34:8: note: at offset 7 into source object 'cvs_Name' of size 7 34 | char cvs_Name[]="$Name$"; | ^ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncatted ncatted.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncbo ncbo.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncecat ncecat.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncflint ncflint.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncpdq ncpdq.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncks ncks.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncks ncks.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncrename ncrename.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncra ncra.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncra ncra.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib64 ./.libs/libnco.so -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' Making all in nco++ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o Invoke.o Invoke.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from libnco++.hh:22: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/fstream:38, from Invoke.cc:9: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncap2.o ncap2.cc In file included from libnco++.hh:26, from ncap2.cc:80: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from fmc_gsl_cls.hh:12: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from libnco++.hh:22: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from ncap2.cc:45: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncap2_att.o ncap2_att.cc In file included from ncap2_utl.hh:54, from ncap2_att.hh:42, from ncap2_att.cc:1: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from ncap2_att.hh:9: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sdo_utl.o sdo_utl.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o sym_cls.o sym_cls.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o fmc_cls.o fmc_cls.cc In file included from ncap2_utl.hh:54, from vtl_cls.hh:11, from fmc_cls.hh:13, from fmc_cls.cc:3: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from fmc_cls.hh:12: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncap2_utl.o ncap2_utl.cc In file included from ncap2_utl.hh:54, from ncap2_utl.cc:11: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from ncap2_utl.hh:20: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o fmc_all_cls.o fmc_all_cls.cc In file included from prs_cls.hh:16, from ncoGrammar.g:30, from fmc_all_cls.hh:19, from fmc_all_cls.cc:10: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from fmc_all_cls.hh:14: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ fmc_all_cls.cc: In member function 'print_cls::fnd(antlr::ASTRefCount, antlr::ASTRefCount, fmc_cls&, ncoTree&)': fmc_all_cls.cc:5679:15: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 5679 | strncpy(var->val.cp,cp,sz); | ^ fmc_all_cls.cc:5675:17: note: length computed here 5675 | sz=strlen(cp); | ~~~~~~^~~~ fmc_all_cls.cc: In member function 'bil_cls::fnd(antlr::ASTRefCount, antlr::ASTRefCount, fmc_cls&, ncoTree&)': fmc_all_cls.cc:3834:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3834 | in_typ=var_arr[0]->type; | ~~~~~~~~~^ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ fmc_all_cls.cc:3838:31: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3838 | var_arr[1]=nco_var_cnf_typ(in_typ,var_arr[1]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ fmc_all_cls.cc:3855:19: warning: 'var_arr' may be used uninitialized [-Wmaybe-uninitialized] 3855 | if(var_arr[1]->nbr_dim < 2) | ~~~~~~~~~^ fmc_all_cls.cc:3780:12: note: 'var_arr' declared here 3780 | var_sct *var_arr[6]; | ^~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o prs_cls.o prs_cls.cc In file included from ncap2_utl.hh:54, from prs_cls.cc:23: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/ostream:38, from /usr/include/c++/12/iostream:39, from prs_cls.cc:13: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o NcapVar.o NcapVar.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o NcapVarVector.o NcapVarVector.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o fmc_gsl_cls.o fmc_gsl_cls.cc In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from ncap2_att.hh:5, from ncap2_utl.hh:60, from ncoGrammar.g:31, from fmc_gsl_cls.hh:43: ../../config.h:449: note: this is the location of the previous definition 449 | #define NCO_GSL_VERSION 207 | In file included from nco_gsl.hh:31, from fmc_gsl_cls.cc:11: ../../config.h:449: warning: "NCO_GSL_VERSION" redefined 449 | #define NCO_GSL_VERSION 207 | fmc_gsl_cls.hh:49: note: this is the location of the previous definition 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | In file included from prs_cls.hh:16, from ncoGrammar.g:30: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/c++/12/bits/locale_classes.h:40, from /usr/include/c++/12/bits/ios_base.h:41, from /usr/include/c++/12/ios:42, from /usr/include/c++/12/istream:38, from /usr/include/c++/12/sstream:38, from fmc_gsl_cls.hh:21: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ fmc_gsl_cls.cc: In member function 'gsl_mfit_cls::mfit_fnd(bool&, std::vector, std::allocator > >&, fmc_cls&, ncoTree&)': fmc_gsl_cls.cc:5212:33: warning: 'var_tmp' may be used uninitialized [-Wmaybe-uninitialized] 5212 | var_tmp=nco_var_cnf_typ(NC_DOUBLE,var_tmp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ fmc_gsl_cls.cc:5143:19: note: 'var_tmp' was declared here 5143 | var_sct *var_tmp; | ^~~~~~~ make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncoParser.o ncoParser.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoParser.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/TokenStream.hpp:12, from ncoParser.hpp:6: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncoLexer.o ncoLexer.cpp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoLexer.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/CommonToken.hpp:12, from ncoLexer.hpp:6: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mASSIGN(bool)': ncoLexer.cpp:416:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 416 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS_ASSIGN(bool)': ncoLexer.cpp:430:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 430 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS_ASSIGN(bool)': ncoLexer.cpp:444:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 444 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES_ASSIGN(bool)': ncoLexer.cpp:458:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 458 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE_ASSIGN(bool)': ncoLexer.cpp:472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINC(bool)': ncoLexer.cpp:486:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 486 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDEC(bool)': ncoLexer.cpp:500:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 500 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUESTION(bool)': ncoLexer.cpp:514:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 514 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPAREN(bool)': ncoLexer.cpp:528:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 528 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRPAREN(bool)': ncoLexer.cpp:542:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 542 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLCURL(bool)': ncoLexer.cpp:556:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 556 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRCURL(bool)': ncoLexer.cpp:570:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 570 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLSQUARE(bool)': ncoLexer.cpp:584:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 584 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mRSQUARE(bool)': ncoLexer.cpp:598:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 598 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOMMA(bool)': ncoLexer.cpp:612:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 612 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mQUOTE(bool)': ncoLexer.cpp:626:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 626 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mSEMI(bool)': ncoLexer.cpp:640:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 640 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCOLON(bool)': ncoLexer.cpp:654:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 654 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCARET(bool)': ncoLexer.cpp:668:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 668 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mTIMES(bool)': ncoLexer.cpp:682:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 682 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDIVIDE(bool)': ncoLexer.cpp:696:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 696 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMOD(bool)': ncoLexer.cpp:710:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 710 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mPLUS(bool)': ncoLexer.cpp:724:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 724 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mMINUS(bool)': ncoLexer.cpp:738:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 738 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mEQ(bool)': ncoLexer.cpp:752:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 752 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNEQ(bool)': ncoLexer.cpp:766:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 766 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLTHAN(bool)': ncoLexer.cpp:780:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 780 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGTHAN(bool)': ncoLexer.cpp:794:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 794 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLEQ(bool)': ncoLexer.cpp:808:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 808 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mGEQ(bool)': ncoLexer.cpp:822:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 822 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFLTHAN(bool)': ncoLexer.cpp:836:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 836 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mFGTHAN(bool)': ncoLexer.cpp:850:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 850 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLAND(bool)': ncoLexer.cpp:864:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 864 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLNOT(bool)': ncoLexer.cpp:878:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 878 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLOR(bool)': ncoLexer.cpp:892:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 892 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDOT(bool)': ncoLexer.cpp:906:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 906 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCALL_REF(bool)': ncoLexer.cpp:920:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 920 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mDGT(bool)': ncoLexer.cpp:934:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 934 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPH(bool)': ncoLexer.cpp:950:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 950 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mLPHDGT(bool)': ncoLexer.cpp:1036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mXPN(bool)': ncoLexer.cpp:1136:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1136 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_NM_QT(bool)': ncoLexer.cpp:1212:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1212 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mBLASTOUT(bool)': ncoLexer.cpp:1340:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1340 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mUNUSED_OPS(bool)': ncoLexer.cpp:1370:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1370 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mWS(bool)': ncoLexer.cpp:1422:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1422 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mCXX_COMMENT(bool)': ncoLexer.cpp:1472:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1472 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mC_COMMENT(bool)': ncoLexer.cpp:1502:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1502 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER_DOT(bool)': ncoLexer.cpp:1560:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1560 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mNUMBER(bool)': ncoLexer.cpp:1684:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 1684 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mVAR_ATT(bool)': ncoLexer.cpp:2036:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2036 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mATT_ID(bool)': ncoLexer.cpp:2317:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2317 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ ncoLexer.cpp: In member function 'void ncoLexer::mINCLUDE(bool)': ncoLexer.cpp:2688:51: warning: variable '_saveIndex' set but not used [-Wunused-but-set-variable] 2688 | ANTLR_USE_NAMESPACE(std)string::size_type _saveIndex; | ^~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o nco_gsl.o nco_gsl.cc make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' nco_gsl.cc:14:1: warning: 'double compute_covariance(const double*, size_t, const double*, size_t, size_t, double, double, const double*)' defined but not used [-Wunused-function] 14 | compute_covariance | ^~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf -DH5_USE_110_API -I/usr/include -I/usr/include/udunits2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c -o ncoTree.o ncoTree.cpp In file included from prs_cls.hh:16, from ncoGrammar.g:30, from ncoTree.cpp:2: NcapVector.hh:23:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 23 | struct less_mag : public std::binary_function< T, T, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/string:48, from /usr/include/antlr/Token.hpp:13, from /usr/include/antlr/AST.hpp:13, from /usr/include/antlr/TreeParser.hpp:12, from ncoTree.hpp:7: /usr/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/antlr/AST.hpp:12: In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::out_asn(antlr::ASTRefCount)' at ncoTree.cpp:4454:3: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::out_asn(antlr::ASTRefCount)' at ncoTree.cpp:4454:3: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3118:5: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3118:5: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3123:9: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3118:5: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3212:6: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3212:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3219:4: /usr/include/antlr/ASTRefCount.hpp:33:35: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3212:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3219:4: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3212:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3217:10: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3212:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3397:7: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3397:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3402:11: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlmake[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' ined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3397:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3459:8: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3459:8: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3464:12: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign_ntl(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3459:8: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::var_lmt_one_lhs(antlr::ASTRefCount, bool)' at ncoTree.cpp:5602:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::var_lmt_one_lhs(antlr::ASTRefCount, bool)' at ncoTree.cpp:5602:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::var_lmt_one_lhs(antlr::ASTRefCount, bool)' at ncoTree.cpp:5602:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::var_lmt_one_lhs(antlr::ASTRefCount, bool)' at ncoTree.cpp:5602:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3574:5: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3574:5: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3579:9: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3574:5: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3833:6: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3833:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3838:10: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:3833:6: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4111:7: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4111:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4118:5: /usr/include/antlr/ASTRefCount.hpp:33:35: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4111:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4118:5: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4111:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::increment()', inlined from 'antlr::ASTRefCount::operator=(antlr::ASTRefCount const&)' at /usr/include/antlr/ASTRefCount.hpp:77:50, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4116:11: /usr/include/antlr/ASTRefCount.hpp:28:19: warning: pointer may be used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 28 | ++count; | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4111:7: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4307:8: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::assign(antlr::ASTRefCount, bool, bool)' at ncoTree.cpp:4307:8: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::where_assign(antlr::ASTRefCount, var_sct_tag*)' at ncoTree.cpp:5245:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::where_assign(antlr::ASTRefCount, var_sct_tag*)' at ncoTree.cpp:5245:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::where_assign(antlr::ASTRefCount, var_sct_tag*)' at ncoTree.cpp:5245:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::where_assign(antlr::ASTRefCount, var_sct_tag*)' at ncoTree.cpp:5245:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::var_lmt_one(antlr::ASTRefCount)' at ncoTree.cpp:5398:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::var_lmt_one(antlr::ASTRefCount)' at ncoTree.cpp:5398:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ In member function 'antlr::ASTRef::decrement()', inlined from 'antlr::ASTRefCount::~ASTRefCount()' at /usr/include/antlr/ASTRefCount.hpp:59:28, inlined from 'ncoTree::var_lmt_one(antlr::ASTRefCount)' at ncoTree.cpp:5398:2: /usr/include/antlr/ASTRefCount.hpp:33:27: warning: pointer used after 'operator delete(void*, unsigned long)' [-Wuse-after-free] 33 | return (--count==0); | ^~~~~ In member function 'antlr::ASTRefCount::~ASTRefCount()', inlined from 'ncoTree::var_lmt_one(antlr::ASTRefCount)' at ncoTree.cpp:5398:2: /usr/include/antlr/ASTRefCount.hpp:60:25: note: call to 'operator delete(void*, unsigned long)' here 60 | delete ref; | ^~~~~~~~~~ make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' /bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection ../nco/libnco.la -lantlr -lgsl -lgslcblas -lm -L/usr/lib64 -lnetcdf -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o ../nco/.libs/libnco.so -L/usr/lib64 -lantlr -lnetcdf -lcurl -lgsl -lgslcblas -lm -ludunits2 -fopenmp make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Nothing to be done for 'all-am'. Making all in man make[2]: Nothing to be done for 'all'. Making all in doc make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/sh '/builddir/build/BUILD/nco-5.1.1/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/sh '/builddir/build/BUILD/nco-5.1.1/autobld/missing' makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/doc' + make -C doc html pdf make: Entering directory '/builddir/build/BUILD/nco-5.1.1/doc' rm -rf nco.htp if /bin/sh '/builddir/build/BUILD/nco-5.1.1/autobld/missing' makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi TEXINPUTS="../autobld:$TEXINPUTS" \ MAKEINFO='/bin/sh '/builddir/build/BUILD/nco-5.1.1/autobld/missing' makeinfo -I .' \ texi2dvi --pdf --batch --build-dir=nco.t2p -o nco.pdf \ nco.texi egrep: warning: egrep is obsolescent; using grep -E This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.1/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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[73] [74] [75] [76] [77] [78] [79] [80] [81] Overfull \hbox (176.23434pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (72.75797pt too wide) in paragraph at lines 7042--7042 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 7176--7176 [][] [82] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in 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7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (164.40764pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (175.90501pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (302.37614pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (802.51198pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (584.06184pt too wide) in paragraph at lines 7176--7176 [][] [84] Overfull \hbox (60.93126pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (578.31316pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (198.89977pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (101.17207pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (1020.96211pt too wide) in paragraph at lines 7176--7176 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 7211--7211 [][] [85] [86] Overfull \hbox (95.42339pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 7331--7331 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 7331--7331 [][] [87] Overfull \hbox (26.43913pt too wide) in paragraph at lines 7360--7360 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7360--7360 [][] Underfull \hbox (badness 10000) in paragraph at lines 7394--7402 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [88] [89] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7577--7577 [][] [90] [91] [92] [93] [94] [95] Overfull \hbox (55.18257pt too wide) in paragraph at lines 8088--8088 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8088--8088 [][] [96] [97] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8228--8228 [][] [98] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8287--8287 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8292--8292 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8294--8294 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8313--8313 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] [99] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8316--8316 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8317--8317 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8318--8318 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [100] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8485--8485 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8485--8485 [][] [101] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8485--8485 [][] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] [118] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9762--9762 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9762--9762 [][] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] [127] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] Underfull \hbox (badness 10000) in paragraph at lines 10457--10464 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10920--10920 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] [137] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11331--11331 [][] [138] [139] [140] [141] [142] [143] [144] [145] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12043--12043 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12050--12050 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12429--12429 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12430--12430 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12431--12431 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12432--12432 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12440--12440 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12482--12482 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12557--12557 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] [154] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12745--12745 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [155] [156] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13183--13228 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] [162] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13597--13618 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13681--13681 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14089--14089 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14092--14092 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14249--14249 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14289--14289 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14306--14306 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14335--14335 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] [177] [178] Overfull \hbox (118.41814pt too wide) in paragraph at lines 14609--14609 [][] [179] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14714--14714 [][] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14733--14733 [][] [181] [182] Overfull \hbox (83.92601pt too wide) in paragraph at lines 14903--14903 [][] [183] Overfull \hbox (95.42339pt too wide) in paragraph at lines 14929--14929 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14940--14940 [][] [184] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14986--14986 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 14986--14986 [][] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15238--15238 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [188] [189] Overfull \hbox (60.93126pt too wide) in paragraph at lines 15380--15380 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15506--15515 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15525--15525 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15567--15567 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15567--15567 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15658--15658 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15683--15683 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15885--15885 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15902--15902 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16043--16043 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16111--16111 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16194--16194 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16322--16322 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16339--16339 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16372--16372 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16656--16657 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16664--16665 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16668--16669 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16672--16673 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16676--16677 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16692--16693 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16697--16698 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16715--16715 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16716--16716 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16723--16723 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16748--16749 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16827--16828 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16828--16829 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16829--16830 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16830--16830 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16830--16831 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16839--16840 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16848--16849 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16849--16849 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16851--16852 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16852--16852 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16913--16913 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16990--16992 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17003--17004 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17021--17022 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17046--17046 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17073--17073 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17089--17089 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17090--17090 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17091--17091 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17098--17098 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17099--17099 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17100--17100 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17206--17206 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17208--17208 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17731--17747 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17791--17807 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17877--17887 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18090--18090 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18090--18090 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18172--18172 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18178--18178 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18806--18806 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18861--18861 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19288--19288 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19292--19292 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19295--19295 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19296--19296 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19344--19344 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20207--20207 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20208--20208 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20506--20506 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20508--20508 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20591--20591 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20636--20636 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20810--20810 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20811--20811 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20841--20841 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20847--20847 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20848--20848 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 20987--20987 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20994--20994 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20996--20996 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21064--21064 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21070--21070 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 21097--21097 [][] [262] [263] [264] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21324--21324 [][] [265] [266] [267] [268] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21635--21635 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt sl sz_lmn@texttt ][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21641--21641 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 21642--21642 []@texttt [-O] [-o @textttsl output- [269] [270] [271] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21881--21881 []@texttt nces -O ~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w eights[] [272] [273] [274] Overfull \hbox (43.6852pt too wide) in paragraph at lines 22153--22153 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [275] [276] [277] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22407--22407 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22408--22408 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 22411--22411 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 22412--22412 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [278] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22496--22496 []@texttt 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brea ks HDF ncgen[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 23046--23046 []@texttt hncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p ackages[] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23047--23047 []@texttt h4_ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda packages[] [286] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23048--23048 []@texttt ncgen-hdf -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De bian packages[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23049--23049 []@texttt hdp dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23050--23050 []@texttt h4_ncdump dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] [287] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23135--23135 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [288] Overfull \hbox (549.89905pt too wide) in paragraph at lines 23248--23248 [][] Overfull \hbox (463.66873pt too wide) in paragraph at lines 23248--23248 [][] [289] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23278--23278 [][] Overfull \hbox (94.43918pt too wide) in paragraph at lines 23278--23278 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23278--23278 [][] [290] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23343--23343 [][] Overfull \hbox (71.44443pt too wide) in paragraph at lines 23343--23343 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23343--23343 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23343--23343 [][] Overfull \hbox (123.18262pt too wide) in paragraph at lines 23382--23382 [][] Overfull \hbox (111.68524pt too wide) in paragraph at lines 23382--23382 [][] Overfull \hbox (232.40768pt too wide) in paragraph at lines 23382--23382 [][] Overfull \hbox (261.15112pt too wide) in paragraph at lines 23382--23382 [][] Overfull \hbox (151.92606pt too wide) in paragraph at lines 23382--23382 [][] [291] [292] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23548--23548 [][] [293] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23630--23630 []@texttt # 0.0,0.1,0.12,0.123,0.1234,0.12345,0.123456,0.1234567,0.12345678,0. 123456789[] Overfull \hbox (193.48041pt too wide) in paragraph at lines 23633--23633 []@texttt ppc_dbl = 0, 0.1, 0.12, 0.123, 0.1234, 0.12345, 0.123456, 0.1234567, 0.12345678, 0.123456789 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23638--23638 []@texttt ppc_dbl = 0., 0.1, 0.12, 0.123, 0.123, 0.123, 0.123, 0.123, 0.123, 0 .123 ;[] Overfull \hbox (78.50665pt too wide) in paragraph at lines 23722--23722 [][] [294] Overfull \hbox (147.4909pt too wide) in paragraph at lines 23765--23765 [][] Overfull \hbox (285.45941pt too wide) in paragraph at lines 23765--23765 [][] Underfull \hbox (badness 10000) in paragraph at lines 23780--23795 []@texttt ncks[] @textrm pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23813--23813 [][] [295] Overfull \hbox (26.76846pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23888--23888 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 23901--23901 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 23909--23909 [][] [296] Overfull \hbox (262.13533pt too wide) in paragraph at lines 24011--24011 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24011--24011 [][] Overfull \hbox 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24011--24011 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24011--24011 [][] [298] Overfull \hbox (26.43913pt too wide) in paragraph at lines 24091--24091 []@texttt # Change values to be sure original values are not copied in followi ng step[] [299] [300] [301] Overfull \hbox (32.18784pt too wide) in paragraph at lines 24312--24312 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [302] [303] Underfull \hbox (badness 10000) in paragraph at lines 24506--24511 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [304] Underfull \hbox (badness 10000) in paragraph at lines 24512--24518 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [305] [306] [307] [308] [309] Overfull \hbox (55.18257pt too wide) in paragraph at lines 24893--24893 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 24906--24906 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [310] Underfull \hbox (badness 10000) in paragraph at lines 24962--24962 []@texttt [-O] [-o @textttsl output- [311] [312] [313] [314] Underfull \hbox (badness 10000) in paragraph at lines 25281--25281 []@texttt [-O] [-o @textttsl output- [315] [316] Overfull \hbox (20.69044pt too wide) in paragraph at lines 25416--25416 []@texttt [-M] [-m @textttsl map_fl@texttt ] [--mpi_nbr=@textttsl mpi_nbr@text tt ] [--mpi_pfx=@textttsl mpi_pfx@texttt ] [--msh_fl=@textttsl msh_fl@texttt ][ ] Overfull \hbox (118.41814pt too wide) in paragraph at lines 25417--25417 []@texttt [--msk_apl] [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@texttt sl msk_out@texttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@texttt ][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 25419--25419 []@texttt [--no_add_fll] [--no_cll_msr] [--no_frm_trm] [--no_permute] [--no_st din] [--no_stg_grd][] [317] [318] Underfull \hbox (badness 6741) in paragraph at lines 25688--25699 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [319] [320] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25933--25933 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 25945--25945 [][] [321] Underfull \hbox (badness 10000) in paragraph at lines 26030--26032 []@reducedrm MOAB[] Underfull \hbox (badness 10000) in paragraph at lines 26033--26038 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d fv Underfull \hbox (badness 10000) in paragraph at lines 26042--26044 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type fv --in_np 2 --out_type cgll 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wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 26650--26650 [][] [329] [330] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] [331] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26961--26961 [][] [332] [333] [334] Overfull \hbox (684.99643pt too wide) in paragraph at lines 27250--27303 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg ories,R3,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [335] [336] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27359--27359 [][] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27382--27382 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27382--27382 [][] [337] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27460--27460 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 27507--27507 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27507--27507 [][] [338] [339] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27625--27625 []@texttt ncremap --sgs_frc=aice --sgs_msk=tmask --sgs_nrm=100 in.nc out.nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 27641--27641 []@texttt ncremap --sgs_frc=sgs_landfrac_ne30.nc/landfrac -m map.nc in.nc out. nc[] [340] Overfull \hbox (21.01978pt too wide) in paragraph at lines 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(60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [398] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [399] [400] Overfull \hbox (60.93126pt too wide) in paragraph at lines 30787--30787 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31097--31097 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] [413] [414] ) (see the transcript file for additional information) Output written on nco.pdf (418 pages, 1736654 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.1/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) 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8287--8287 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8292--8292 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8294--8294 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8313--8313 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8316--8316 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8317--8317 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8318--8318 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [99] [100] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8485--8485 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8485--8485 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8485--8485 [][] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9762--9762 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9762--9762 [][] [118] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] Underfull \hbox (badness 10000) in paragraph at lines 10457--10464 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [127] [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10920--10920 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11331--11331 [][] [137] [138] [139] [140] [141] [142] [143] [144] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12043--12043 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12050--12050 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [145] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12429--12429 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12430--12430 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12431--12431 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12432--12432 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12440--12440 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12482--12482 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12557--12557 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12745--12745 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [154] [155] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] [156] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13183--13228 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13597--13618 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [162] [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13681--13681 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14089--14089 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14092--14092 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14249--14249 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14289--14289 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14306--14306 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14335--14335 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] [177] [178] Overfull \hbox (118.41814pt too wide) in paragraph at lines 14609--14609 [][] [179] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14714--14714 [][] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14733--14733 [][] [181] [182] Overfull \hbox (83.92601pt too wide) in paragraph at lines 14903--14903 [][] [183] Overfull \hbox (95.42339pt too wide) in paragraph at lines 14929--14929 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14940--14940 [][] [184] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14986--14986 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 14986--14986 [][] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15238--15238 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [188] [189] Overfull \hbox (60.93126pt too wide) in paragraph at lines 15380--15380 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15506--15515 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15525--15525 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15567--15567 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15567--15567 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15658--15658 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15683--15683 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15885--15885 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15902--15902 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16043--16043 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16111--16111 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16194--16194 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16322--16322 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16339--16339 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16372--16372 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16656--16657 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16664--16665 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16668--16669 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16672--16673 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16676--16677 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16692--16693 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16697--16698 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16715--16715 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16716--16716 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16723--16723 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16748--16749 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16827--16828 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16828--16829 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16829--16830 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16830--16830 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16830--16831 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16839--16840 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16848--16849 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16849--16849 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16851--16852 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16852--16852 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16913--16913 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16990--16992 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17003--17004 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17021--17022 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17046--17046 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17073--17073 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17089--17089 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17090--17090 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17091--17091 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17098--17098 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17099--17099 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17100--17100 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17206--17206 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17208--17208 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17731--17747 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17791--17807 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17877--17887 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18090--18090 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18090--18090 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18172--18172 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18178--18178 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18806--18806 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18861--18861 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19288--19288 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19292--19292 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19295--19295 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19296--19296 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19344--19344 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20207--20207 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20208--20208 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20506--20506 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20508--20508 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20591--20591 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20636--20636 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20810--20810 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20811--20811 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20841--20841 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20847--20847 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20848--20848 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 20987--20987 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20994--20994 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20996--20996 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21064--21064 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21070--21070 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (78.17732pt too wide) in paragraph at 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~/1.nc ~/2.nc ~/2.nc ~/out.nc # Clumsy, limited to integer w eights[] [272] [273] [274] Overfull \hbox (43.6852pt too wide) in paragraph at lines 22153--22153 []@texttt ncflint --fix_rec_crd -w 0.8,0.0 emissions.nc emissions.nc scaled_em issions.nc[] [275] [276] [277] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22407--22407 []@texttt % ncks -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.nc[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 22408--22408 []@texttt % ls -l bnr.dat | cut -d ' ' -f 5 # 200 B contains time and one_dmn_ rec_var[] Overfull \hbox (49.76321pt too wide) in paragraph at lines 22411--22411 []@texttt % ncks -C -O -v one_dmn_rec_var -b bnr.dat -p ~/nco/data in.nc out.n c[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 22412--22412 []@texttt % ls -l bnr.dat | cut -d ' ' -f # 40 B contains one_dmn_rec_var only [] [278] Overfull \hbox (32.51715pt too wide) in paragraph at lines 22496--22496 []@texttt 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brea ks HDF ncgen[] Overfull \hbox (84.25534pt too wide) in paragraph at lines 23046--23046 []@texttt hncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is hncgen in some RPM p ackages[] Overfull \hbox (95.75272pt too wide) in paragraph at lines 23047--23047 []@texttt h4_ncgen -b -o hdf.hdf hdf.cdl # HDF ncgen is h4_ncgen in Anaconda packages[] [286] Overfull \hbox (118.74747pt too wide) in paragraph at lines 23048--23048 []@texttt ncgen-hdf -b -o hdf.hdf hdf.cdl # HDF ncgen is ncgen-hdf in some De bian packages[] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23049--23049 []@texttt hdp dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] Overfull \hbox (44.01453pt too wide) in paragraph at lines 23050--23050 []@texttt h4_ncdump dumpsds hdf.hdf # ncdump/h5dump-equivalent for HDF4 [] [287] Overfull \hbox (61.26059pt too wide) in paragraph at lines 23135--23135 []@texttt % ncks --trd -H -d lat,90.0 -d lev,1000.0 -v three_dmn_var in.nc out .nc[] [288] Overfull \hbox (549.89905pt too 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pro-vides ad-di-tional op-tions to con-fig-ure @reduc edrm NcML[] @textrm out-put: Overfull \hbox (44.01453pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 23813--23813 [][] [295] Overfull \hbox (26.76846pt too wide) in paragraph at lines 23813--23813 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 23888--23888 []@texttt ncks --trd -m in.nc | grep -E ': type' | cut -f 1 -d ' ' | sed 's/:/ /' | sort[] Overfull \hbox (129.91551pt too wide) in paragraph at lines 23901--23901 []@texttt ncks --trd -M -m in.nc | grep -E -i "^z attribute [0-9]+: purpose" | cut -f 11- -d ' ' | sort[] Overfull \hbox (262.13533pt too wide) in paragraph at lines 23909--23909 [][] [296] Overfull \hbox (262.13533pt too wide) in paragraph at lines 24011--24011 [][] Overfull \hbox (244.88927pt too wide) in paragraph at lines 24011--24011 [][] Overfull \hbox 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24011--24011 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 24011--24011 [][] [298] Overfull \hbox (26.43913pt too wide) in paragraph at lines 24091--24091 []@texttt # Change values to be sure original values are not copied in followi ng step[] [299] [300] [301] Overfull \hbox (32.18784pt too wide) in paragraph at lines 24312--24312 []@texttt [-R] [-r] [--ram_all] [-t @textttsl thr_nbr@texttt ] [-U] [--unn] [- v @textttsl var@texttt [,[]]] [-X ...] [-x][] [302] [303] Underfull \hbox (badness 10000) in paragraph at lines 24506--24511 []@textsl pck[]map[] @textrm key val-ues: `@texttt dbl_flt[]@textrm '[], `@tex ttt pck_map_dbl_flt[]@textrm '[], `@texttt dbl_sgl[]@textrm '[], [304] Underfull \hbox (badness 10000) in paragraph at lines 24512--24518 []@textsl pck[]map[] @textrm key val-ues: `@texttt flt_dbl[]@textrm '[], `@tex ttt pck_map_flt_dbl[]@textrm '[], `@texttt sgl_dbl[]@textrm '[], [305] [306] [307] [308] [309] Overfull \hbox (55.18257pt too wide) in paragraph at lines 24893--24893 []@texttt ncecat -O -u time in.nc out.nc # Create degenerate record dimension named "time"[] Overfull \hbox (20.69044pt too wide) in paragraph at lines 24906--24906 []@texttt ncks -O --mk_rec_dmn time in.nc out.nc # Change "time" to record dim ension[] [310] Underfull \hbox (badness 10000) in paragraph at lines 24962--24962 []@texttt [-O] [-o @textttsl output- [311] [312] [313] [314] Underfull \hbox (badness 10000) in paragraph at lines 25281--25281 []@texttt [-O] [-o @textttsl output- [315] [316] Overfull \hbox (20.69044pt too wide) in paragraph at lines 25416--25416 []@texttt [-M] [-m @textttsl map_fl@texttt ] [--mpi_nbr=@textttsl mpi_nbr@text tt ] [--mpi_pfx=@textttsl mpi_pfx@texttt ] [--msh_fl=@textttsl msh_fl@texttt ][ ] Overfull \hbox (118.41814pt too wide) in paragraph at lines 25417--25417 []@texttt [--msk_apl] [--msk_dst=@textttsl msk_dst@texttt ] [--msk_out=@texttt sl msk_out@texttt ] [--msk_src=@textttsl msk_src@texttt ] [--mss_val=@textttsl mss_val@texttt ][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 25419--25419 []@texttt [--no_add_fll] [--no_cll_msr] [--no_frm_trm] [--no_permute] [--no_st din] [--no_stg_grd][] [317] [318] Underfull \hbox (badness 6741) in paragraph at lines 25688--25699 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [319] [320] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25933--25933 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 25945--25945 [][] [321] Underfull \hbox (badness 10000) in paragraph at lines 26030--26032 []@reducedrm MOAB[] Underfull \hbox (badness 10000) in paragraph at lines 26033--26038 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d fv Underfull \hbox (badness 10000) in paragraph at lines 26042--26044 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type fv --in_np 2 --out_type cgll 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wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 26650--26650 [][] [329] [330] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] [331] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26961--26961 [][] [332] [333] [334] Overfull \hbox (684.99643pt too wide) in paragraph at lines 27250--27303 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg ories,R3,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [335] [336] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27359--27359 [][] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27382--27382 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27382--27382 [][] [337] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27460--27460 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 27507--27507 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27507--27507 [][] [338] [339] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27625--27625 []@texttt ncremap --sgs_frc=aice --sgs_msk=tmask --sgs_nrm=100 in.nc out.nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 27641--27641 []@texttt ncremap --sgs_frc=sgs_landfrac_ne30.nc/landfrac -m map.nc in.nc out. nc[] [340] Overfull \hbox (21.01978pt too wide) in paragraph at lines 27763--27763 []@texttt ncremap --permute=Time,new_dim,nCells --map=map.nc in.nc out.nc[] Overfull \hbox (21.01978pt too wide) in paragraph at lines 27764--27764 []@texttt ncremap --permute=time,new_dim,lat,lon --map=map.nc in.nc out.nc[] [341] [342] [343] [344] [345] Overfull \hbox (61.26059pt too wide) in paragraph at lines 28230--28230 []@texttt ncremap -V var_rgr -d dst.nc -O ~/rgr in.nc # CF coordinates convent ion[] Overfull \hbox (101.5014pt too wide) in paragraph at lines 28232--28232 []@texttt ncremap -R "--rgr lat_nm=xq --rgr lon_nm=zj" -d dst.nc -O ~/rgr in.n c # Manual[] [346] [347] Overfull \hbox (21.01978pt too wide) in paragraph at lines 28375--28375 [][] Overfull \hbox (44.01453pt too wide) in paragraph at lines 28375--28375 [][] Overfull \hbox (44.01453pt too wide) in paragraph at lines 28375--28375 [][] [348] Overfull \hbox (15.27109pt too wide) in paragraph at lines 28438--28438 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 28447--28447 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 28460--28460 [][] [349] [350] [351] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28749--28749 []@texttt ncpdq -a Time,nVertLevels,maxEdges,MaxEdges2,nEdges,nCells mpas.nc m pas_ncpdq.nc[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 28750--28750 []@texttt ncremap -R "--rgr col_nm=nCells" -i mpas_ncpdq.nc -m mpas120_to_t62. nc -O ~/rgr[] [352] [353] [354] [355] [356] [357] [358] [359] Overfull \hbox (187.40239pt too wide) in paragraph at lines 29302--29302 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 29302--29302 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 29314--29314 [][] [360] Overfull \hbox (216.14583pt too wide) in paragraph at lines 29343--29343 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 29362--29362 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 29362--29362 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 29362--29362 [][] [361] [362] Overfull \hbox (49.4339pt too wide) in paragraph at lines 29443--29443 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss] [-I][] Underfull \hbox (badness 10000) in paragraph at lines 29446--29446 []@texttt [-O] [-o @textttsl output- [363] [364] [365] [366] Chapter 5 [367] [368] [369] [370] [371] Chapter 6 [372] [373] Chapter 7 [374] (/builddir/build/BUILD/nco-5.1.1/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [375] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [376] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 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(60.93126pt too wide) in paragraph at lines 30787--30787 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31097--31097 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] (./nco.cps [413] Overfull \hbox (37.49283pt too wide) in paragraph at lines 132--132 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] Overfull \hbox (32.76788pt too wide) in paragraph at lines 141--141 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],\smallttsl subcycle\smalltt ],[\smallttsl interleave\ smalltt ][] [414] [415] [416] [417] [418] Overfull \hbox (37.49283pt too wide) in paragraph at lines 724--724 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Overfull \hbox (9.54256pt too wide) in paragraph at lines 2080--2080 \smalltt QuantizeBitGroomRoundNumberOfSignificantDigits[] Overfull \hbox (23.71739pt too wide) in paragraph at lines 2086--2086 \smalltt QuantizeGranularBitRoundNumberOfSignificantDigits[] [431] [432] [433] [434]) [435] [436] ) (see the transcript file for additional information) Output written on nco.pdf (444 pages, 2007392 bytes). Transcript written on nco.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (../../../.././nco.texi (/builddir/build/BUILD/nco-5.1.1/autobld/texinfo.tex Loading texinfo [version 2013-09-10.16]: pdf, fonts, markup, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/usr/share/texlive/texmf-dist/tex/generic/epsf/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (./nco.aux) (/builddir/build/BUILD/nco-5.1.1/doc/my-bib-macros.texi) [1{/usr/share/texlive/ texmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2] (./nco.toc [-1] [-2] [-3] [-4]) [-5] [-6] (./nco.toc) (./nco.toc) (Foreword) [1] [2] (Summary) [3] [4] Chapter 1 [5] [6] [7] [8] [9] [10] [11] [12] [13] Overfull \hbox (32.18782pt too wide) in paragraph at lines 1428--1428 []@texttt ncks fl.hdf fl.nc # Convert HDF4->netCDF4 (NCO 4.4.0+, netCDF 4.3.1+)[] [14] [15] Chapter 2 [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] Chapter 3 [27] [28] [29] [30] [31] [32] Overfull \hbox (55.18257pt too wide) in paragraph at lines 3119--3119 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 3147--3147 [][] [33] [34] [35] [36] [37] [38] [39] [40] Overfull \hbox (233.39189pt too wide) in paragraph at lines 3898--3898 []@texttt http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/ncep.reanalysis. dailyavgs/surface/pres.sfc.1969.nc ~/foo.nc[] [41] Overfull \hbox (382.85777pt too wide) in 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wide) in paragraph at lines 7360--7360 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 7360--7360 [][] [87] Underfull \hbox (badness 10000) in paragraph at lines 7394--7402 []@textrm `@texttt --rnr=@textttsl rnr_thr[]@textrm '[] or `@texttt --rgr_rnr=@ textttsl rnr_thr[]@textrm '[] or `@texttt --renormalize=@textttsl rnr_thr[]@tex trm '[] or [88] [89] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (135.6642pt too wide) in paragraph at lines 7577--7577 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 7577--7577 [][] [90] [91] [92] [93] [94] Overfull \hbox (55.18257pt too wide) in paragraph at lines 8088--8088 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8088--8088 [][] [95] [96] [97] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8228--8228 [][] [98] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8287--8287 []@texttt # Average seasonally contiguous climatological monthly means into NH winter[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8292--8292 []@texttt ncra --cb=2014,2016,1,12,0 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8294--8294 []@texttt ncra --cb=2014,2016,1,12,0 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 8313--8313 []@texttt # Average seasonally discontiguous diurnally resolved means into a s eason[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8316--8316 []@texttt nces --cb=2014,2016,1,12,8 -w 92,92,91,90 MAM.nc JJA.nc SON.nc DJF.n c ANN.nc[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 8317--8317 []@texttt # Reduce twelve diurnally resolved months to make into an annual cli matology[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 8318--8318 []@texttt nces --cb=2014,2016,1,12,8 -w 31,28,31,30,31,30,31,31,30,31,30,31 cl m_??.nc ANN.nc[] [99] [100] Overfull \hbox (43.6852pt too wide) in paragraph at lines 8485--8485 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 8485--8485 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 8485--8485 [][] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] [113] [114] [115] [116] [117] Overfull \hbox (14.94176pt too wide) in paragraph at lines 9762--9762 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 9762--9762 [][] [118] [119] [120] [121] [122] [123] [124] [125] [126] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 10455--10455 [][] Underfull \hbox (badness 10000) in paragraph at lines 10457--10464 []@textrm These @reducedrm NSD[] @textrm al-go-rithms write an algorithm- [127] [128] [129] [130] [131] Overfull \hbox (55.18257pt too wide) in paragraph at lines 10920--10920 []@texttt # b1850c5cn_doe_polar_merged_0_cesm1_2_0_HD+MAM4+tun2b.hp.e003.cam.h 0.0001-01.nc[] [132] [133] [134] [135] [136] Overfull \hbox (78.17732pt too wide) in paragraph at lines 11331--11331 [][] [137] [138] [139] [140] [141] [142] [143] [144] Overfull \hbox (20.69044pt too wide) in paragraph at lines 12043--12043 [] @texttt -s 'prs_sfc_sdn=sqrt((prs_sfc_anm^2).total($time)/($time.size- 1))' \[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12050--12050 []@texttt ncap2 -s 'prs_sfc_sdn=(prs_sfc-prs_sfc.avg($time)).rmssdn($time)' in .nc out.nc[] [145] [146] [147] [148] [149] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12429--12429 []@texttt # tpt_dbl = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 12430--12430 []@texttt # tpt_flt = 273.1, 273.2, 273.3, 273.4, 273.5, 273.6, 273.7, 273.8, 273.9, 274[] Overfull \hbox (66.67995pt too wide) in paragraph at lines 12431--12431 []@texttt # Create file with five "ten-month years" (i.e., 50 timesteps) of te mperature data[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12432--12432 []@texttt ncrcat -O -v tpt_flt,tpt_dbl -p ~/nco/data in.nc in.nc in.nc in.nc i n.nc ~/foo.nc[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12440--12440 []@texttt ncra --flt -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [150] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12482--12482 []@texttt ncra --dbl -O ~/foo_avg1.nc ~/foo_avg2.nc ~/foo_avg3.nc ~/foo_avg_mt h1.nc[] [151] Overfull \hbox (14.94176pt too wide) in paragraph at lines 12557--12557 []@texttt ncap2 -O -s 'TREFHT_dbl=double(TREFHT);area_dbl=double(area)' in.nc in.nc[] [152] [153] Overfull \hbox (32.18782pt too wide) in paragraph at lines 12745--12745 []@texttt ncap2 -s 'tpt=tpt.convert(NC_SHORT);prs=prs.convert(NC_DOUBLE)' in.n c out.nc[] [154] [155] Overfull \hbox (112.66945pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] [156] Overfull \hbox (78.17732pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (141.41289pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (193.15108pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] Overfull \hbox (239.14058pt too wide) in paragraph at lines 12945--12945 [][] [157] [158] Underfull \hbox (badness 6741) in paragraph at lines 13183--13228 @texttt areaTriangle[]@textrm , @texttt cellMask[]@textrm , @texttt cellsOnCell []@textrm , @texttt cellsOnEdge[]@textrm , @texttt cellsOnVertex[]@textrm , @te xttt dcEdge[]@textrm , [159] [160] [161] Chapter 4 Underfull \hbox (badness 10000) in paragraph at lines 13597--13618 @texttt "3.9.5" last modified 2008/05/11 built May 12 2008 on neige by [162] [163] [164] [165] Overfull \hbox (14.94176pt too wide) in paragraph at lines 13681--13681 []@texttt [-D @textttsl dbg@texttt ] [-F] [-f] [--glb ...] [-H] [-h] [--hdf] [ --hdr_pad @textttsl nbr@texttt ] [--hpss][] [166] [167] [168] [169] [170] Overfull \hbox (20.69044pt too wide) in paragraph at lines 14089--14089 []@texttt defdim("cnt",10,NC_UNLIMITED); # Dimension is unlimited (record dime nsion)[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14092--14092 []@texttt defdim("cnt",10,737); # All non-zero values indicate dimension size is fixed[] [171] [172] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14249--14249 [][] [173] Overfull \hbox (89.6747pt too wide) in paragraph at lines 14289--14289 []@texttt (C) var_out=array(val_srt,val_inc,/$dmn1,$dmn2...,$dmnN/); // Multi- dimensional output[] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14306--14306 []@texttt var_out=array(10.0,2,$time) // 10.5,12.5,14.5,16.5,18.5,20.5,22.5,24 .5,26.5,28.5[] [174] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14335--14335 []@texttt // 3.14159, 4.712385, 6.28318, 7.853975, 9.42477, 10.99557, 12.56636 , 14.13716 ;[] [175] [176] [177] [178] Overfull \hbox (118.41814pt too wide) in paragraph at lines 14609--14609 [][] [179] Overfull \hbox (32.18782pt too wide) in paragraph at lines 14714--14714 [][] [180] Overfull \hbox (14.94176pt too wide) in paragraph at lines 14733--14733 [][] [181] [182] Overfull \hbox (83.92601pt too wide) in paragraph at lines 14903--14903 [][] [183] Overfull \hbox (95.42339pt too wide) in paragraph at lines 14929--14929 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 14940--14940 [][] [184] Overfull \hbox (55.18257pt too wide) in paragraph at lines 14986--14986 [][] Overfull \hbox (181.6537pt too wide) in paragraph at lines 14986--14986 [][] [185] [186] [187] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15238--15238 []@texttt ncap2 -v -O -s 'rec_pck=pack(three_dmn_rec_var,-0.001,40.0);' in.nc foo.nc[] [188] [189] Overfull \hbox (60.93126pt too wide) in paragraph at lines 15380--15380 []@texttt n3=1/(three_dmn_var_dbl.cos().pow(2))-tan(three_dmn_var_dbl)^2; // n 3 type double[] [190] [191] Underfull \hbox (badness 10000) in paragraph at lines 15506--15515 []@textrm Consider ir-reg-u- Overfull \hbox (49.43388pt too wide) in paragraph at lines 15525--15525 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 15567--15567 [][] [192] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 15567--15567 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15567--15567 [][] [193] Overfull \hbox (43.6852pt too wide) in paragraph at lines 15658--15658 []@texttt export NCO_PATH=":/home/henryb/bin/:/usr/local/scripts:/opt/SOURCES/ nco/data:"[] [194] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15683--15683 []@texttt dsr_map=invert_map(srt_map); // Produce "de-sort" map that inverts s rt_map[] [195] [196] [197] Overfull \hbox (147.16158pt too wide) in paragraph at lines 15885--15885 []@texttt //print("sorted time (ascending order) and associated sort map =\n") ;print(time);print(srt_map);[] [198] Overfull \hbox (20.69044pt too wide) in paragraph at lines 15902--15902 [] @texttt 4. Add the 1-d sort map to the 3-d sort map (NCO automatically re sizes)[] [199] [200] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16035--16035 [][] Overfull \hbox (187.40239pt too wide) in paragraph at lines 16043--16043 [][] [201] Overfull \hbox (14.94176pt too wide) in paragraph at lines 16111--16111 [][] [202] Overfull \hbox (244.88927pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (124.16682pt too wide) in paragraph at lines 16182--16182 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 16194--16194 [][] [203] [204] Overfull \hbox (89.6747pt too wide) in paragraph at lines 16322--16322 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 16339--16339 []@texttt mask_var = (XLAT >= lat_min && XLAT <= lat_max) && (XLONG >= lon_min && XLONG <= lon_max);[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 16372--16372 []@texttt var_out=bilinear_interp(grid_in,grid_out,grid_out_x,grid_out_y,grid_ in_x,grid_in_y)[] [205] [206] [207] [208] Overfull \hbox (12.86244pt too wide) in paragraph at lines 16656--16657 @textrm status=gsl[]sf[]bessel[]Jn[]array(int,int,double,&var[]out)| Overfull \hbox (11.18951pt too wide) in paragraph at lines 16664--16665 @textrm status=gsl[]sf[]bessel[]In[]array(int,int,double,&var[]out)| Overfull \hbox (40.40187pt too wide) in paragraph at lines 16668--16669 @textrm staus=gsl[]sf[]bessel[]In[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (15.75204pt too wide) in paragraph at lines 16672--16673 @textrm status=gsl[]sf[]bessel[]Kn[]array(int,int,double,&var[]out)| Overfull \hbox (49.22275pt too wide) in paragraph at lines 16676--16677 @textrm status=gsl[]sf[]bessel[]Kn[]scaled[]array(int,int,double,&var[]out)| Overfull \hbox (24.5852pt too wide) in paragraph at lines 16692--16693 @textrm status=gsl[]sf[]bessel[]il[]scaled[]array(int,double,&var[]out)| Overfull \hbox (27.32272pt too wide) in paragraph at lines 16697--16698 @textrm status=gsl[]sf[]bessel[]kl[]scaled[]array(int,double,&var[]out)| Overfull \hbox (2.30698pt too wide) in paragraph at lines 16715--16715 @textrm gsl[]sf[]coulomb[]wave[]FGp[]array| Overfull \hbox (4.42094pt too wide) in paragraph at lines 16716--16716 @textrm gsl[]sf[]coulomb[]wave[]sphF[]array| Overfull \hbox (14.64099pt too wide) in paragraph at lines 16723--16723 @textrm gsl[]sf[]coupling[]6j[]INCORRECT[]e| Overfull \hbox (6.31714pt too wide) in paragraph at lines 16748--16749 @textrm gsl[]sf[]ellint[]RJ(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (19.27467pt too wide) in paragraph at lines 16827--16828 @textrm gsl[]sf[]hyperg[]2F1(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (43.86371pt too wide) in paragraph at lines 16828--16829 @textrm gsl[]sf[]hyperg[]2F1[]conj(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (58.2204pt too wide) in paragraph at lines 16829--16830 @textrm gsl[]sf[]hyperg[]2F1[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[]expr)| Overfull \hbox (7.07959pt too wide) in paragraph at lines 16830--16830 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm[]e| Overfull \hbox (82.80943pt too wide) in paragraph at lines 16830--16831 @textrm gsl[]sf[]hyperg[]2F1[]conj[]renorm(dbl[]expr,dbl[]expr,dbl[]expr,dbl[] expr)| Overfull \hbox (7.29619pt too wide) in paragraph at lines 16839--16840 @textrm status=gsl[]sf[]legendre[]Pl[]array(int,double,&var[]out)| Overfull \hbox (32.54205pt too wide) in paragraph at lines 16848--16849 @textrm status=gsl[]sf[]legendre[]Plm[]array(int,int,double,&var[]out)| Overfull \hbox (1.07516pt too wide) in paragraph at lines 16849--16849 @textrm gsl[]sf[]legendre[]Plm[]deriv[]array| Overfull \hbox (49.02791pt too wide) in paragraph at lines 16851--16852 @textrm status=gsl[]sf[]legendre[]sphPlm[]array(int,int,double,&var[]out)| Overfull \hbox (17.56102pt too wide) in paragraph at lines 16852--16852 @textrm gsl[]sf[]legendre[]sphPlm[]deriv[]array| Overfull \hbox (3.4296pt too wide) in paragraph at lines 16913--16913 @textrm gsl[]sf[]angle[]restrict[]symm[]err[]e| [209] [210] [211] [212] [213] [214] [215] [216] Underfull \hbox (badness 10000) in paragraph at lines 16990--16992 []@texttt status=@textbf gsl[]fit[]linear Underfull \hbox (badness 10000) in paragraph at lines 17003--17004 []@texttt status= @textbf gsl[]fit[]wlinear@texttt (data_x,stride_x,data_w,stri de_w,data_y,stride_ Underfull \hbox (badness 10000) in paragraph at lines 17021--17022 []@texttt status= @textbf gsl[]fit[]wmul@texttt (data_x,stride_x,data_w,stride_ w,data_y,stride_ [217] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17046--17046 [][] Overfull \hbox (129.91551pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 17073--17073 [][] Overfull \hbox (112.66945pt too wide) in paragraph at lines 17073--17073 [][] [218] Overfull \hbox (141.41289pt too wide) in paragraph at lines 17089--17089 []@texttt double gsl_stats_short_sd_with_fixed_mean (short data[], size_t stri de, size_t n, double mean);[] Overfull \hbox (124.16682pt too wide) in paragraph at lines 17090--17090 []@texttt double gsl_stats_wmean (double w[], size_t wstride, double data[], s ize_t stride, size_t n);[] Overfull \hbox (181.6537pt too wide) in paragraph at lines 17091--17091 []@texttt double gsl_stats_quantile_from_sorted_data (double sorted_data[], si ze_t stride, size_t n, double f) ;[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17098--17098 []@texttt double gsl_stats_sd_with_fixed_mean (var_data, data_stride, n, var_m ean);[] Overfull \hbox (95.42339pt too wide) in paragraph at lines 17099--17099 []@texttt double gsl_stats_wmean (var_weight, weight_stride, var_data, data_st ride, n, var_mean);[] Overfull \hbox (83.92601pt too wide) in paragraph at lines 17100--17100 []@texttt double gsl_stats_quantile_from_sorted_data (var_sorted_data, data_st ride, n, var_f) ;[] [219] [220] Overfull \hbox (175.90501pt too wide) in paragraph at lines 17206--17206 []@texttt // a2=9056646, 12776696, 1011656, 13354708, 5139066, 1388751, 111639 02, 7730127, 15531355, 10387694 ;[] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17208--17208 []@texttt ncap2 -v -O -s 'a1[time]=21;a2=gsl_rng_uniform_int(a1).sort();' in.n c foo.nc[] [221] [222] [223] [224] Underfull \hbox (badness 10000) in paragraph at lines 17731--17747 @texttt exp(x)[]@textsl Exponential @textrm Ex-po-nen-tial of @textsl x[]@text rm , $@texti e[]$@textrm . Ex-am-ple: [225] Underfull \hbox (badness 10000) in paragraph at lines 17791--17807 @texttt ln(x)[]@textsl Natural Log-a-rithm @textrm Nat-u-ral log-a-rithm of @t extsl x[]@textrm , $[](@texti x@textrm )$. Ex-am-ple: Underfull \hbox (badness 10000) in paragraph at lines 17877--17887 @texttt sin(x)[]@textsl Sine @textrm Sine of @textsl x[] @textrm where @textsl x[] @textrm is spec-i-fied in ra-di-ans. Ex-am-ple: [226] [227] Overfull \hbox (26.43913pt too wide) in paragraph at lines 18090--18090 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 18090--18090 [][] [228] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18172--18172 []@texttt my_time[time]={10.50, 11.0, 11.50, 12.0, 12.5, 13.0, 13.5, 14.0, 14. 50, 15.00};[] Overfull \hbox (187.40239pt too wide) in paragraph at lines 18178--18178 []@texttt // 32.05428, 27.61159, 24.55934, 23.45467, 24.55947, 27.61184, 32.05 458, 37.39353, 43.29914, 49.55782 ;[] [229] [230] [231] [232] [233] [234] [235] Overfull \hbox (49.43388pt too wide) in paragraph at lines 18806--18806 [][] [236] Overfull \hbox (20.69046pt too wide) in paragraph at lines 18861--18861 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss][] [237] [238] [239] [240] [241] Overfull \hbox (20.69044pt too wide) in paragraph at lines 19288--19288 []@texttt [-d @textttsl dbg_lvl@texttt ] [--d2f] [--dpf=@textttsl dpf@texttt ] [--dpt_fl=@textttsl dpt_fl@texttt ] [-E @textttsl yr_prv@texttt ] [-e @texttts l yr_end@texttt ][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 19292--19292 []@texttt [-n @textttsl nco_opt@texttt ] [--no_cll_msr] [--no_frm_trm] [--no_n tv_tms] [--no_stg_grd] [--no_stdin][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 19295--19295 []@texttt [-S @textttsl yr_prv@texttt ] [-s @textttsl yr_srt@texttt ] [--seaso ns=@textttsl csn_lst@texttt ] [--sgs_frc=@textttsl sgs_frc@texttt ] [--split][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 19296--19296 []@texttt [-t @textttsl thr_nbr@texttt ] [--tpd=@textttsl tpd@texttt ] [--uio] [-v @textttsl var_lst@texttt ] [--var_xtr=@textttsl var_xtr@texttt ] [--versio n][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 19344--19344 []@texttt ncclimo --case=caseid --start=srt_yr --end=end_yr --input=drc_in --o utput=drc_out[] [242] [243] [244] [245] [246] [247] [248] [249] [250] Overfull \hbox (38.26584pt too wide) in paragraph at lines 20207--20207 []@texttt ncclimo --seasons=none ... # Produce only monthly climos[ ] Overfull \hbox (49.76321pt too wide) in paragraph at lines 20208--20208 []@texttt ncclimo --seasons=mam,jja,son,djf ... # Monthly + MAM,JJA,SON,DJF,AN N[] [251] [252] [253] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20506--20506 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc | ncclimo -v T,Q,RH -s 1 -e 9 -o $dr c_out[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20508--20508 []@texttt cd $drc_in;ls *mdl*000[1-9]*.nc > foo;ncclimo -v T,Q,RH -s 1 -e 9 -o $drc_out < foo[] [254] Overfull \hbox (20.69044pt too wide) in paragraph at lines 20591--20591 [][] [255] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20636--20636 []@texttt ncclimo -c amip_xpt -s 1980 -e 1983 -i drc_in -o drc_out -r map_fl - O drc_rgr[] [256] [257] Underfull \hbox (badness 10000) in paragraph at lines 20810--20810 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1980 -e 1981 -i raw -o clm - Underfull \hbox (badness 10000) in paragraph at lines 20811--20811 []@texttt ncclimo -v FSNT,AODVIS -c ca-seid -s 1982 -e 1983 -i raw -o clm - Overfull \hbox (20.69044pt too wide) in paragraph at lines 20841--20841 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -r ma p.nc \[] Overfull \hbox (72.42863pt too wide) in paragraph at lines 20847--20847 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1980 -e 1981 -i raw -o prv -O rg r_prv -r map.nc[] Overfull \hbox (60.93126pt too wide) in paragraph at lines 20848--20848 []@texttt ncclimo -v FSNT,AODVIS -c caseid -s 1982 -e 1983 -i raw -o clm -O rg r -r map.nc \[] [258] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 20885--20885 [][] [259] Overfull \hbox (49.43388pt too wide) in paragraph at lines 20987--20987 []@texttt qsub -I -A CLI115 -V -l nodes=1 -l walltime=00:10:00 -lpartition=gpu -N ncclimo[] Overfull \hbox (14.94176pt too wide) in paragraph at lines 20994--20994 []@texttt qsub -I -A HiRes_EarthSys --nodecount=1 --time=00:10:00 --jobname=nc climo[] Overfull \hbox (43.6852pt too wide) in paragraph at lines 20996--20996 []@texttt salloc -A acme --nodes=1 --partition=debug --time=00:10:00 --job-na me=ncclimo[] [260] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21064--21064 [][] [261] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21070--21070 []@texttt qsub -A CLI115 -V -l nodes=12 -l walltime=00:30:00 -j oe -m e -N ncc limo \[] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (66.67995pt too wide) in paragraph at lines 21097--21097 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 21097--21097 [][] [262] [263] [264] Overfull \hbox (55.18257pt too wide) in paragraph at lines 21324--21324 [][] [265] [266] [267] [268] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21635--21635 []@texttt [--cmp @textttsl cmp_sng@texttt ] [--cnk_byt @textttsl sz_byt@texttt ] [--cnk_csh @textttsl sz_byt@texttt ] [--cnk_dmn @textttsl nm@texttt ,@texttt sl sz_lmn@texttt ][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21641--21641 []@texttt [--no_cll_msr] [--no_frm_trm] [--no_tmp_fl] [--nsm_fl|grp] [--nsm_sf x sfx][] Underfull \hbox (badness 10000) in paragraph at lines 21642--21642 []@texttt [-O] [-o @textttsl output- [269] [270] [271] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21881--21881 []@texttt nces -O 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][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 25419--25419 []@texttt [--no_add_fll] [--no_cll_msr] [--no_frm_trm] [--no_permute] [--no_st din] [--no_stg_grd][] [317] [318] Underfull \hbox (badness 6741) in paragraph at lines 25688--25699 @texttt lonCell[]@textrm , @texttt lonEdge[]@textrm , @texttt lonVertex[]@textr m , @texttt maxLevelEdgeTop[]@textrm , @texttt meshDensity[]@textrm , @texttt n EdgesOnCell[]@textrm , [319] [320] Overfull \hbox (15.27109pt too wide) in paragraph at lines 25933--25933 [][] Overfull \hbox (84.25534pt too wide) in paragraph at lines 25945--25945 [][] [321] Underfull \hbox (badness 10000) in paragraph at lines 26030--26032 []@reducedrm MOAB[] Underfull \hbox (badness 10000) in paragraph at lines 26033--26038 []@reducedrm MOAB[] @textrm op-tions: `@texttt --method cgll --order 4 --metho d fv Underfull \hbox (badness 10000) in paragraph at lines 26042--26044 []@reducedrm TR[] @textrm op-tions: `@texttt --in_type fv --in_np 2 --out_type cgll 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wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (176.23434pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (55.5119pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (112.99878pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (135.99353pt too wide) in paragraph at lines 26641--26641 [][] Overfull \hbox (204.97778pt too wide) in paragraph at lines 26650--26650 [][] [329] [330] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] Overfull \hbox (32.51715pt too wide) in paragraph at lines 26889--26889 [][] [331] Overfull \hbox (61.26059pt too wide) in paragraph at lines 26961--26961 [][] [332] [333] [334] Overfull \hbox (684.99643pt too wide) in paragraph at lines 27250--27303 @texttt Time,depth,nVertInterfaces,nVertLevels,nVertLevelsP1,nZBGCTracers,nBio LayersP1,nAlgaeIceLayers,nDisIronIceLayers,nIceLayers,maxEdges,MaxEdges2,nCateg ories,R3,ONE,TWO,FOUR,nEdges,nCells[]@textrm , [335] [336] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27359--27359 [][] Overfull \hbox (15.27109pt too wide) in paragraph at lines 27382--27382 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27382--27382 [][] [337] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27460--27460 [][] Overfull \hbox (67.00928pt too wide) in paragraph at lines 27507--27507 [][] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27507--27507 [][] [338] [339] Overfull \hbox (26.76846pt too wide) in paragraph at lines 27625--27625 []@texttt ncremap --sgs_frc=aice --sgs_msk=tmask --sgs_nrm=100 in.nc out.nc[] Overfull \hbox (55.5119pt too wide) in paragraph at lines 27641--27641 []@texttt ncremap --sgs_frc=sgs_landfrac_ne30.nc/landfrac -m map.nc in.nc out. nc[] [340] Overfull \hbox (21.01978pt too wide) in paragraph at lines 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\hbox (26.76846pt too wide) in paragraph at lines 28460--28460 [][] [349] [350] [351] Overfull \hbox (55.18257pt too wide) in paragraph at lines 28749--28749 []@texttt ncpdq -a Time,nVertLevels,maxEdges,MaxEdges2,nEdges,nCells mpas.nc m pas_ncpdq.nc[] Overfull \hbox (49.43388pt too wide) in paragraph at lines 28750--28750 []@texttt ncremap -R "--rgr col_nm=nCells" -i mpas_ncpdq.nc -m mpas120_to_t62. nc -O ~/rgr[] [352] [353] [354] [355] [356] [357] [358] [359] Overfull \hbox (187.40239pt too wide) in paragraph at lines 29302--29302 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 29302--29302 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 29314--29314 [][] [360] Overfull \hbox (216.14583pt too wide) in paragraph at lines 29343--29343 [][] Overfull \hbox (118.41814pt too wide) in paragraph at lines 29362--29362 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 29362--29362 [][] Overfull \hbox (106.92076pt too wide) in paragraph at lines 29362--29362 [][] [361] [362] Overfull \hbox (49.4339pt too wide) in paragraph at lines 29443--29443 []@texttt [-G @textttsl gpe_dsc@texttt ] [-g @textttsl grp@texttt [,[]]] [--gl b ...] [-H] [-h] [--hdr_pad @textttsl nbr@texttt ] [--hpss] [-I][] Underfull \hbox (badness 10000) in paragraph at lines 29446--29446 []@texttt [-O] [-o @textttsl output- [363] [364] [365] [366] Chapter 5 [367] [368] [369] [370] [371] Chapter 6 [372] [373] Chapter 7 [374] (/builddir/build/BUILD/nco-5.1.1/doc/xmp/cmb_fl.sh Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] [375] Overfull \hbox (32.18782pt too wide) in paragraph at lines 25--25 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 46--46 [][] [376] Overfull \hbox (55.18257pt too wide) in paragraph at lines 56--56 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 70--70 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 74--74 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 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[][] [385] Overfull \hbox (43.6852pt too wide) in paragraph at lines 42--42 [][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 47--47 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 71--71 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 85--85 [][] [386] Overfull \hbox (43.6852pt too wide) in paragraph at lines 93--93 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 97--97 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 105--105 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 114--114 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 122--122 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 127--127 [][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 129--129 [][] [387] Overfull \hbox (20.69044pt too wide) in paragraph at lines 138--138 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/gsl_rgr.nco Overfull \hbox (26.43913pt too wide) in paragraph at lines 5--5 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 21--21 [][] [388]) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/ann_avg_grp.sh Overfull \hbox (20.69044pt too wide) in paragraph at lines 12--12 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 15--15 [][] [389]) [390] (/builddir/build/BUILD/nco-5.1.1/doc/xmp/mcc.sh Overfull \hbox (20.69044pt too wide) in paragraph at lines 20--20 [][][][] Overfull \hbox (26.43913pt too wide) in paragraph at lines 21--21 [][][] [391] Overfull \hbox (72.42863pt too wide) in paragraph at lines 41--41 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 48--48 [][] Overfull \hbox (72.42863pt too wide) in paragraph at lines 49--49 [][] Overfull \hbox (83.92601pt too wide) in paragraph at lines 51--51 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 52--52 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 61--61 [][][] Overfull \hbox (55.18257pt too wide) in paragraph at lines 63--63 [][] Overfull \hbox (49.43388pt too wide) in paragraph at lines 68--68 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 71--71 [][] [392] Overfull \hbox (43.6852pt too wide) in paragraph at lines 76--76 [][] Overfull \hbox (60.93126pt too wide) in paragraph at lines 77--77 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/mcc_grp.sh [393]) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/rgr.sh [394] Overfull \hbox (32.18782pt too wide) in paragraph at lines 4--4 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 6--6 [][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 10--10 [][] Overfull \hbox (32.18782pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox 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(60.93126pt too wide) in paragraph at lines 26--26 [][][][] Overfull \hbox (78.17732pt too wide) in paragraph at lines 27--27 [][][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31--31 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 32--32 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/crd.nco Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] ) (/builddir/build/BUILD/nco-5.1.1/doc/xmp/pmt_crd.sh Overfull \hbox (37.93651pt too wide) in paragraph at lines 3--3 [][] Overfull \hbox (43.6852pt too wide) in paragraph at lines 7--7 [][][][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 8--8 [][][][] [398] Overfull \hbox (14.94176pt too wide) in paragraph at lines 17--17 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 20--20 [][] Overfull \hbox (37.93651pt too wide) in paragraph at lines 22--22 [][] Overfull \hbox (89.6747pt too wide) in paragraph at lines 31--31 [][] ) Chapter 8 [399] [400] Overfull \hbox (60.93126pt too wide) in paragraph at lines 30787--30787 [][] Chapter 9 [401] [402] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [403] [404] [405] [406] Overfull \hbox (37.93651pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (20.69044pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (95.42339pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (469.08809pt too wide) in paragraph at lines 31097--31097 [][] [407] Overfull \hbox (693.28691pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] Overfull \hbox (14.94176pt too wide) in paragraph at lines 31097--31097 [][] [408] Chapter 10 [409] [410] (General Index) [411] [412] (./nco.cps [413] Overfull \hbox (37.49283pt too wide) in paragraph at lines 132--132 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] Overfull \hbox (32.76788pt too wide) in paragraph at lines 141--141 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],\smallttsl subcycle\smalltt ],[\smallttsl interleave\ smalltt ][] [414] [415] [416] [417] [418] Overfull \hbox (37.49283pt too wide) in paragraph at lines 724--724 \smallttsl dim\smalltt ,[\smallttsl min\smalltt ],[\smallttsl max\smalltt ],[\s mallttsl stride\smalltt ],[\smallttsl subcycle\smalltt ],[\smallttsl interleave \smalltt ][] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Overfull \hbox (9.54256pt too wide) in paragraph at lines 2080--2080 \smalltt QuantizeBitGroomRoundNumberOfSignificantDigits[] Overfull \hbox (23.71739pt too wide) in paragraph at lines 2086--2086 \smalltt QuantizeGranularBitRoundNumberOfSignificantDigits[] [431] [432] [433] [434]) [435] [436] ) (see the transcript file for additional information) Output written on nco.pdf (444 pages, 2007469 bytes). Transcript written on nco.log. make: Leaving directory '/builddir/build/BUILD/nco-5.1.1/doc' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.a0nPug + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 ++ dirname /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd nco-5.1.1 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 'INSTALL=/usr/bin/install -p' Making install in data make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/data' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' /usr/bin/install -p ncclimo ncremap ncz2psx '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/data' Making install in src make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src' Making install in nco make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p libnco.la '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64' libtool: install: /usr/bin/install -p .libs/libnco-5.1.1.so /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco-5.1.1.so libtool: install: (cd /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64 && { ln -s -f libnco-5.1.1.so libnco.so || { rm -f libnco.so && ln -s libnco-5.1.1.so libnco.so; }; }) libtool: install: /usr/bin/install -p .libs/libnco.lai /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco.la libtool: install: /usr/bin/install -p .libs/libnco.a /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco.a libtool: install: chmod 644 /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco.a libtool: install: ranlib /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco.a libtool: warning: remember to run 'libtool --finish /usr/lib64' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncatted /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncbo /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncbo libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncecat /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncecat libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncflint /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncflint libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncks /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncks libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncpdq /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncpdq libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncra /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncra libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncrename /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncrename libtool: warning: 'libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncwa /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncwa /usr/bin/make install-exec-hook make[4]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco' cd /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[4]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco' Making install in nco++ make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -p ncap2 '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin' libtool: warning: '../nco/libnco.la' has not been installed in '/usr/lib64' libtool: install: /usr/bin/install -p .libs/ncap2 /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncap2 make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src/nco++' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src' make[3]: Entering directory '/builddir/build/BUILD/nco-5.1.1/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/src' Making install in man make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.1/man' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/man' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/man/man1' /usr/bin/install -p -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/man/man1' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/man' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/man' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.1/doc' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1/doc' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/info' /usr/bin/install -p -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/info' install-info --info-dir='/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/info' '/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/info/nco.info' make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/doc' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.1/doc' make[1]: Entering directory '/builddir/build/BUILD/nco-5.1.1' make[2]: Entering directory '/builddir/build/BUILD/nco-5.1.1' make[2]: Nothing to be done for 'install-exec-am'. make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/nco-5.1.1' make[1]: Leaving directory '/builddir/build/BUILD/nco-5.1.1' + rm /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco.la + rm -f /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/info/dir + chrpath -d -k /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncap2 /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncatted /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncbo /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncclimo /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncdiff /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncea /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncecat /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/nces /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncflint /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncks /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncpdq /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncra /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncrcat /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncremap /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncrename /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncwa /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncz2psx `/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncclimo' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncremap' probably isn't an ELF file. elf_open: Exec format error `/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncz2psx' probably isn't an ELF file. elf_open: Exec format error + : + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.1.1-1.fc38 --unique-debug-suffix -5.1.1-1.fc38.x86_64 --unique-debug-src-base nco-5.1.1-1.fc38.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/nco-5.1.1 extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncap2 extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncatted extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncbo extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncecat extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncflint extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncks extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncpdq extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncra extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncrename extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/bin/ncwa extracting debug info from /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/lib64/libnco-5.1.1.so original debug info size: 15208kB, size after compression: 13852kB /usr/bin/sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. cpio: src/nco/ncap_yacc.h: Cannot stat: No such file or directory cpio: src/nco/ncap_yacc.y: Cannot stat: No such file or directory 12177 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/ncz2psx from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/ncremap from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/bin/ncclimo from /usr/bin/env bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: nco-5.1.1-1.fc38.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.5MFtTt + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.1 + DOCDIR=/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr README README.md /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/rtfm.txt /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nco.html /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nco.pdf /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nco.css /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/index.shtml /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/TODO /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/ChangeLog /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nco.png /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nco_news.shtml /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + cp -pr doc/nsf.png /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/doc/nco + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.j3gtgf + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.1 + LICENSEDIR=/builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/licenses/nco + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/licenses/nco + cp -pr doc/LICENSE /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64/usr/share/licenses/nco + RPM_EC=0 ++ jobs -p + exit 0 Provides: libnco-5.1.1.so()(64bit) nco = 5.1.1-1.fc38 nco(x86-64) = 5.1.1-1.fc38 Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: /usr/bin/bash libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libnco-5.1.1.so()(64bit) libnetcdf.so.19()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libudunits2.so.0()(64bit) rtld(GNU_HASH) Processing files: nco-devel-5.1.1-1.fc38.x86_64 Provides: nco-devel = 5.1.1-1.fc38 nco-devel(x86-64) = 5.1.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-static-5.1.1-1.fc38.x86_64 Provides: nco-static = 5.1.1-1.fc38 nco-static(x86-64) = 5.1.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debugsource-5.1.1-1.fc38.x86_64 Provides: nco-debugsource = 5.1.1-1.fc38 nco-debugsource(x86-64) = 5.1.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: nco-debuginfo-5.1.1-1.fc38.x86_64 Provides: debuginfo(build-id) = 0bbac73cc1a8341ddb0fc716b993c046b24d347f debuginfo(build-id) = 2b27768cc12993b13c6e576ab7302a3f6bae88ca debuginfo(build-id) = 44da3024c130180318ec757bcff19fded8e41a70 debuginfo(build-id) = 4fba494df6a25de465484a5433d54bc22dc9aee3 debuginfo(build-id) = 5d53c88bbdf70dad2f06b4643706e51557c417ef debuginfo(build-id) = 6372aa9000ac86e21625196105e23c06ee40e6a4 debuginfo(build-id) = 71860bebad72f47ad263acf66ce1e0f96d2aa60a debuginfo(build-id) = 7603266e58ff04fb3a96fd98f976e463dd35394c debuginfo(build-id) = 90ac4ffc30adb437250750cc56f110c46f921c41 debuginfo(build-id) = a0f8f13bb10e36dd66fcda054b51f3899c0d029a debuginfo(build-id) = a551083f2a23babef43d0f9f2c1d9b2b9ded5a74 libnco-5.1.1.so-5.1.1-1.fc38.x86_64.debug()(64bit) nco-debuginfo = 5.1.1-1.fc38 nco-debuginfo(x86-64) = 5.1.1-1.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: nco-debugsource(x86-64) = 5.1.1-1.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 Wrote: /builddir/build/RPMS/nco-5.1.1-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/nco-debuginfo-5.1.1-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/nco-static-5.1.1-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/nco-devel-5.1.1-1.fc38.x86_64.rpm Wrote: /builddir/build/RPMS/nco-debugsource-5.1.1-1.fc38.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.TBUAkm + umask 022 + cd /builddir/build/BUILD + cd nco-5.1.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/nco-5.1.1-1.fc38.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qe7GFA + umask 022 + cd /builddir/build/BUILD + rm -rf nco-5.1.1 nco-5.1.1.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0