Warning: Permanently added '13.122.90.48' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8479800-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 1.2
PID: 20265
Logging PID: 20266
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 8479800,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'a1c5c2504e8b7d08fe6515fd749f8c748734abc7',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-20',
 'project_dirname': 'gcc-15-smoketest-3.failed.checker',
 'project_name': 'gcc-15-smoketest-3.failed.checker',
 'project_owner': 'dmalcolm',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3.failed.checker/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'dmalcolm/gcc-15-smoketest-3.failed.checker--dmalcolm',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'dmalcolm',
 'tags': [],
 'task_id': '8479800-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/mmseq /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq'...

Running: git checkout a1c5c2504e8b7d08fe6515fd749f8c748734abc7 --

cmd: ['git', 'checkout', 'a1c5c2504e8b7d08fe6515fd749f8c748734abc7', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq
rc: 0
stdout: 
stderr: Note: switching to 'a1c5c2504e8b7d08fe6515fd749f8c748734abc7'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at a1c5c25 automatic import of mmseq

Running: dist-git-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3.failed.checker/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  2661k      0  0:00:01  0:00:01 --:--:-- 2664k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736384473.167844 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736384473.167844 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq/mmseq.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736384473.167844/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-31afac3d-a35b-4004-be55-d794045139cc
INFO: Checking that 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 image matches host's architecture
INFO: Copy content of container 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736384473.167844/root
INFO: mounting 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 with podman image mount
INFO: image 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 as /var/lib/containers/storage/overlay/94ca247095614150848e67cea26d68d782195861139b4b21050cc50c991028f8/merged
INFO: umounting image 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 (/var/lib/containers/storage/overlay/94ca247095614150848e67cea26d68d782195861139b4b21050cc50c991028f8/merged) with podman image umount
INFO: Removing image mock-bootstrap-31afac3d-a35b-4004-be55-d794045139cc
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1736384473.167844/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.s390x
  rpm-sequoia-1.7.0-3.fc42.s390x
  dnf5-5.2.8.1-2.fc42.s390x
  dnf5-plugins-5.2.8.1-2.fc42.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |   9.5 KiB/s |   4.8 KiB |  00m01s
 Copr repository                        100% |   2.4 KiB/s |   1.5 KiB |  00m01s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:
 bash                              s390x  5.2.37-1.fc42              copr_base    8.3 MiB
 bzip2                             s390x  1.0.8-19.fc41              fedora      99.2 KiB
 coreutils                         s390x  9.5-11.fc42                fedora       5.7 MiB
 cpio                              s390x  2.15-2.fc42                copr_base    1.1 MiB
 diffutils                         s390x  3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 42-0.12                    fedora      19.8 KiB
 findutils                         s390x  1:4.10.0-4.fc41            fedora       1.9 MiB
 gawk                              s390x  5.3.0-4.fc41               fedora       1.8 MiB
 glibc-minimal-langpack            s390x  2.40.9000-26.fc42          fedora       0.0   B
 grep                              s390x  3.11-9.fc41                fedora       1.0 MiB
 gzip                              s390x  1.13-2.fc41                fedora     400.8 KiB
 info                              s390x  7.1.1-2.fc42               fedora     409.1 KiB
 patch                             s390x  2.7.6-25.fc41              fedora     298.3 KiB
 redhat-rpm-config                 noarch 300-1.fc42                 fedora     186.8 KiB
 rpm-build                         s390x  4.20.0-1.fc42              fedora     200.4 KiB
 sed                               s390x  4.9-3.fc41                 fedora     873.2 KiB
 shadow-utils                      s390x  2:4.17.0-2.fc42            fedora       4.0 MiB
 tar                               s390x  2:1.35-4.fc41              fedora       3.0 MiB
 unzip                             s390x  6.0-65.fc42                fedora       2.2 MiB
 util-linux                        s390x  2.40.2-8.fc42              fedora       3.7 MiB
 which                             s390x  2.21-42.fc41               fedora      83.9 KiB
 xz                                s390x  1:5.6.3-2.fc42             fedora       1.2 MiB
Installing dependencies:
 add-determinism                   s390x  0.5.0-1.fc42               fedora       3.3 MiB
 alternatives                      s390x  1.31-1.fc42                fedora      60.6 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        s390x  4.0.3-1.fc42               fedora     358.9 KiB
 authselect                        s390x  1.5.0-8.fc42               fedora     157.3 KiB
 authselect-libs                   s390x  1.5.0-8.fc42               fedora     823.5 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          s390x  2.43.50-9.fc42             fedora      27.4 MiB
 build-reproducibility-srpm-macros noarch 0.5.0-1.fc42               fedora     735.0   B
 bzip2-libs                        s390x  1.0.8-19.fc41              fedora      88.5 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-4.fc42  fedora       2.6 MiB
 coreutils-common                  s390x  9.5-11.fc42                fedora      11.2 MiB
 cracklib                          s390x  2.9.11-6.fc41              fedora     250.0 KiB
 crypto-policies                   noarch 20241128-1.gitbb7b0b0.fc42 fedora     137.3 KiB
 curl                              s390x  8.11.1-2.fc42              fedora     475.8 KiB
 cyrus-sasl-lib                    s390x  2.1.28-27.fc41             fedora       2.4 MiB
 debugedit                         s390x  5.1-2.fc42                 fedora     195.8 KiB
 dwz                               s390x  0.15-8.fc42                fedora     318.6 KiB
 ed                                s390x  1.20.2-2.fc42              copr_base  144.7 KiB
 efi-srpm-macros                   noarch 5-13.fc42                  fedora      40.2 KiB
 elfutils                          s390x  0.192-7.fc42               fedora       2.9 MiB
 elfutils-debuginfod-client        s390x  0.192-7.fc42               fedora      73.0 KiB
 elfutils-default-yama-scope       noarch 0.192-7.fc42               fedora       1.8 KiB
 elfutils-libelf                   s390x  0.192-7.fc42               fedora       1.2 MiB
 elfutils-libs                     s390x  0.192-7.fc42               fedora     746.5 KiB
 fedora-gpg-keys                   noarch 42-0.3                     fedora     126.4 KiB
 fedora-release                    noarch 42-0.12                    fedora       0.0   B
 fedora-release-identity-basic     noarch 42-0.12                    fedora     719.0   B
 fedora-repos                      noarch 42-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 42-0.3                     fedora       2.2 KiB
 file                              s390x  5.45-8.fc42                fedora      99.3 KiB
 file-libs                         s390x  5.45-8.fc42                fedora       9.9 MiB
 filesystem                        s390x  3.18-29.fc42               fedora     106.0   B
 filesystem-srpm-macros            noarch 3.18-29.fc42               fedora      36.1 KiB
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       s390x  15.2-4.fc42                fedora      14.7 MiB
 gdbm                              s390x  1:1.23-7.fc42              copr_base  465.5 KiB
 gdbm-libs                         s390x  1:1.23-7.fc42              copr_base  122.3 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               fedora     779.0   B
 glibc                             s390x  2.40.9000-26.fc42          fedora       5.1 MiB
 glibc-common                      s390x  2.40.9000-26.fc42          fedora       1.1 MiB
 glibc-gconv-extra                 s390x  2.40.9000-26.fc42          fedora       6.5 MiB
 gmp                               s390x  1:6.3.0-2.fc42             copr_base  763.0 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-5.fc42               fedora      60.8 KiB
 jansson                           s390x  2.14-1.fc42                fedora      92.9 KiB
 json-c                            s390x  0.18-1.fc42                fedora      82.9 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     s390x  1.6.3-4.fc41               fedora      54.2 KiB
 krb5-libs                         s390x  1.21.3-3.fc42              fedora       2.4 MiB
 libacl                            s390x  2.3.2-2.fc41               fedora      43.8 KiB
 libarchive                        s390x  3.7.7-1.fc42               fedora       1.0 MiB
 libattr                           s390x  2.5.2-4.fc41               fedora      28.3 KiB
 libblkid                          s390x  2.40.2-8.fc42              fedora     286.4 KiB
 libbrotli                         s390x  1.1.0-5.fc41               fedora     925.1 KiB
 libcap                            s390x  2.71-1.fc42                fedora     211.8 KiB
 libcap-ng                         s390x  0.8.5-3.fc41               fedora      76.7 KiB
 libcom_err                        s390x  1.47.2-1.fc42              fedora      57.7 KiB
 libcurl                           s390x  8.11.1-2.fc42              fedora     861.0 KiB
 libeconf                          s390x  0.7.5-1.fc42               fedora      62.5 KiB
 libevent                          s390x  2.1.12-14.fc41             fedora     938.8 KiB
 libfdisk                          s390x  2.40.2-8.fc42              fedora     394.8 KiB
 libffi                            s390x  3.4.6-3.fc42               copr_base   60.4 KiB
 libgcc                            s390x  14.2.1-6.fc42              fedora     169.2 KiB
 libgomp                           s390x  14.2.1-6.fc42              fedora     527.4 KiB
 libidn2                           s390x  2.3.7-2.fc41               fedora     328.9 KiB
 libmount                          s390x  2.40.2-8.fc42              fedora     375.8 KiB
 libnghttp2                        s390x  1.64.0-1.fc42              fedora     177.9 KiB
 libpkgconf                        s390x  2.3.0-1.fc42               fedora      85.9 KiB
 libpsl                            s390x  0.21.5-4.fc41              fedora      80.3 KiB
 libpwquality                      s390x  1.4.5-11.fc41              fedora     420.9 KiB
 libselinux                        s390x  3.8-0.rc3.1.fc42           fedora     203.4 KiB
 libsemanage                       s390x  3.8-0.rc3.1.fc42           fedora     305.1 KiB
 libsepol                          s390x  3.8-0.rc3.1.fc42           fedora     840.1 KiB
 libsmartcols                      s390x  2.40.2-8.fc42              fedora     192.2 KiB
 libssh                            s390x  0.11.1-1.fc42              fedora     585.3 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         s390x  14.2.1-6.fc42              fedora       3.1 MiB
 libtasn1                          s390x  4.19.0-9.fc41              fedora     187.5 KiB
 libtirpc                          s390x  1.3.6-1.rc3.fc42           fedora     205.3 KiB
 libtool-ltdl                      s390x  2.5.4-1.fc42               fedora      67.9 KiB
 libunistring                      s390x  1.1-8.fc41                 fedora       1.8 MiB
 libuuid                           s390x  2.40.2-8.fc42              fedora      41.2 KiB
 libverto                          s390x  0.3.2-9.fc41               fedora      29.3 KiB
 libxcrypt                         s390x  4.4.37-4.fc42              fedora     269.4 KiB
 libxml2                           s390x  2.12.9-1.fc42              fedora       1.8 MiB
 libzstd                           s390x  1.5.6-2.fc41               fedora     875.7 KiB
 lua-libs                          s390x  5.4.7-1.fc42               fedora     328.8 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          s390x  1.10.0-1.fc41              fedora     201.3 KiB
 mpfr                              s390x  4.2.1-5.fc41               fedora     698.7 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      s390x  6.5-2.20240629.fc41        fedora       1.1 MiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          s390x  2.6.8-6.fc42               fedora     654.5 KiB
 openssl-libs                      s390x  1:3.2.2-10.fc42            fedora       6.0 MiB
 p11-kit                           s390x  0.25.5-4.fc42              fedora       2.5 MiB
 p11-kit-trust                     s390x  0.25.5-4.fc42              fedora     479.2 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               s390x  1.7.0-3.fc42               fedora       1.5 MiB
 pam-libs                          s390x  1.7.0-3.fc42               fedora     122.5 KiB
 pcre2                             s390x  10.44-1.fc41.1             fedora     684.9 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           s390x  2.3.0-1.fc42               fedora      92.4 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                s390x  2.3.0-1.fc42               fedora     988.0   B
 popt                              s390x  1.19-7.fc41                fedora     144.7 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.16.4-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.8.1-4.fc42               fedora     456.0   B
 readline                          s390x  8.2-11.fc42                fedora     556.8 KiB
 rpm                               s390x  4.20.0-1.fc42              fedora       3.1 MiB
 rpm-build-libs                    s390x  4.20.0-1.fc42              fedora     218.4 KiB
 rpm-libs                          s390x  4.20.0-1.fc42              fedora     813.6 KiB
 rpm-sequoia                       s390x  1.7.0-3.fc42               fedora       3.2 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch 2.15.0-9.fc42              fedora     720.7 KiB
 sqlite-libs                       s390x  3.47.2-1.fc42              fedora       1.6 MiB
 systemd-libs                      s390x  257.1-1.fc42               fedora       2.2 MiB
 util-linux-core                   s390x  2.40.2-8.fc42              fedora       1.5 MiB
 xxhash-libs                       s390x  0.8.3-1.fc42               fedora      64.3 KiB
 xz-libs                           s390x  1:5.6.3-2.fc42             fedora     226.1 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               s390x  3.0-42.fc42                fedora     723.1 KiB
 zlib-ng-compat                    s390x  2.2.2-1.fc42               fedora     109.4 KiB
 zstd                              s390x  1.5.6-2.fc41               fedora       1.8 MiB
Installing groups:
 Buildsystem building group                                                              

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation, 184 MiB extra will be used (install 184 MiB, remove 0 B).
[1/1] tar-2:1.35-4.fc41.s390x           100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[1/1] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/2] bzip2-0:1.0.8-19.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[2/2] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/3] redhat-rpm-config-0:300-1.fc42.no 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[3/3] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/4] rpm-build-0:4.20.0-1.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[4/4] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/5] unzip-0:6.0-65.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[5/5] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/6] which-0:2.21-42.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[6/6] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/7] coreutils-0:9.5-11.fc42.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[7/7] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/8] grep-0:3.11-9.fc41.s390x          100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[8/8] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/9] patch-0:2.7.6-25.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[9/9] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/10] sed-0:4.9-3.fc41.s390x          100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[10/10] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/11] shadow-utils-2:4.17.0-2.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[11/11] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/12] util-linux-0:2.40.2-8.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[12/12] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/13] diffutils-0:3.10-8.fc41.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[13/13] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/14] fedora-release-common-0:42-0.12 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[14/14] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/15] findutils-1:4.10.0-4.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[15/15] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/16] gawk-0:5.3.0-4.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[16/16] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/17] glibc-minimal-langpack-0:2.40.9 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[17/17] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/18] gzip-0:1.13-2.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[18/18] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/19] info-0:7.1.1-2.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[19/19] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/20] xz-1:5.6.3-2.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[20/20] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/21] cpio-0:2.15-2.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[21/21] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/22] bash-0:5.2.37-1.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[22/22] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/23] glibc-0:2.40.9000-26.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[23/23] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/24] libacl-0:2.3.2-2.fc41.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[24/24] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/25] libselinux-0:3.8-0.rc3.1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[25/25] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/26] bzip2-libs-0:1.0.8-19.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[26/26] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/27] ansible-srpm-macros-0:1-16.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[27/27] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/28] build-reproducibility-srpm-macr 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[28/28] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/29] dwz-0:0.15-8.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[29/29] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/30] efi-srpm-macros-0:5-13.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[30/30] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/31] file-0:5.45-8.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[31/31] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/32] filesystem-srpm-macros-0:3.18-2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[32/32] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/33] fonts-srpm-macros-1:2.0.5-17.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[33/33] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/34] forge-srpm-macros-0:0.4.0-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[34/34] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/35] fpc-srpm-macros-0:1.3-13.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[35/35] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/36] ghc-srpm-macros-0:1.9.2-1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[36/36] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/37] gnat-srpm-macros-0:6-6.fc41.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[37/37] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/38] go-srpm-macros-0:3.6.0-5.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[38/38] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/39] kernel-srpm-macros-0:1.0-24.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[39/39] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/40] lua-srpm-macros-0:1-14.fc41.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[40/40] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/41] ocaml-srpm-macros-0:10-3.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[41/41] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/42] openblas-srpm-macros-0:2-18.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[42/42] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/43] package-notes-srpm-macros-0:0.5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[43/43] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/44] perl-srpm-macros-0:1-56.fc41.no 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[44/44] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/45] pyproject-srpm-macros-0:1.16.4- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[45/45] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/46] python-srpm-macros-0:3.13-3.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[46/46] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/47] qt5-srpm-macros-0:5.15.15-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[47/47] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/48] qt6-srpm-macros-0:6.8.1-4.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[48/48] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/49] rpm-0:4.20.0-1.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[49/49] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/50] rust-srpm-macros-0:26.3-3.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[50/50] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/51] zig-srpm-macros-0:1-3.fc41.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[51/51] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/52] zip-0:3.0-42.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[52/52] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/53] binutils-0:2.43.50-9.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[53/53] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/54] debugedit-0:5.1-2.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[54/54] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/55] elfutils-0:0.192-7.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[55/55] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/56] elfutils-libelf-0:0.192-7.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[56/56] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/57] libarchive-0:3.7.7-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[57/57] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/58] pkgconf-pkg-config-0:2.3.0-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[58/58] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/59] popt-0:1.19-7.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[59/59] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/60] readline-0:8.2-11.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[60/60] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/61] rpm-build-libs-0:4.20.0-1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[61/61] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/62] rpm-libs-0:4.20.0-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[62/62] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/63] zstd-0:1.5.6-2.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[63/63] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/64] coreutils-common-0:9.5-11.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[64/64] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/65] libattr-0:2.5.2-4.fc41.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[65/65] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/66] libcap-0:2.71-1.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[66/66] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/67] openssl-libs-1:3.2.2-10.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[67/67] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/68] systemd-libs-0:257.1-1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[68/68] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/69] pcre2-0:10.44-1.fc41.1.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[69/69] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/70] audit-libs-0:4.0.3-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[70/70] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/71] libeconf-0:0.7.5-1.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[71/71] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/72] libsemanage-0:3.8-0.rc3.1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[72/72] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/73] pam-libs-0:1.7.0-3.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[73/73] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/74] setup-0:2.15.0-9.fc42.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[74/74] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/75] authselect-libs-0:1.5.0-8.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[75/75] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/76] libblkid-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[76/76] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/77] libcap-ng-0:0.8.5-3.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[77/77] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/78] libfdisk-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[78/78] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/79] libmount-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[79/79] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/80] libsmartcols-0:2.40.2-8.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[80/80] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/81] libuuid-0:2.40.2-8.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[81/81] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/82] ncurses-libs-0:6.5-2.20240629.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[82/82] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/83] pam-0:1.7.0-3.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[83/83] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/84] util-linux-core-0:2.40.2-8.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[84/84] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/85] zlib-ng-compat-0:2.2.2-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[85/85] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/86] fedora-repos-0:42-0.3.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[86/86] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/87] filesystem-0:3.18-29.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[87/87] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/88] mpfr-0:4.2.1-5.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[88/88] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/89] glibc-common-0:2.40.9000-26.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[89/89] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/90] xz-libs-1:5.6.3-2.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[90/90] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/91] glibc-gconv-extra-0:2.40.9000-2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[91/91] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/92] basesystem-0:11-21.fc41.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[92/92] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/93] libgcc-0:14.2.1-6.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[93/93] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/94] libsepol-0:3.8-0.rc3.1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[94/94] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/95] add-determinism-0:0.5.0-1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[95/95] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/96] file-libs-0:5.45-8.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[96/96] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/97] curl-0:8.11.1-2.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[97/97] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/98] alternatives-0:1.31-1.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[98/98] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/99] elfutils-debuginfod-client-0:0. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[99/99] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[  1/100] jansson-0:2.14-1.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[100/100] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/101] libstdc++-0:14.2.1-6.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[101/101] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/102] elfutils-libs-0:0.192-7.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[102/102] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/103] libzstd-0:1.5.6-2.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[103/103] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/104] libxml2-0:2.12.9-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[104/104] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/105] lz4-libs-0:1.10.0-1.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[105/105] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/106] pkgconf-0:2.3.0-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[106/106] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/107] pkgconf-m4-0:2.3.0-1.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[107/107] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/108] libgomp-0:14.2.1-6.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[108/108] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/109] lua-libs-0:5.4.7-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[109/109] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/110] rpm-sequoia-0:1.7.0-3.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[110/110] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/111] sqlite-libs-0:3.47.2-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[111/111] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/112] ca-certificates-0:2024.2.69_v 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[112/112] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/113] crypto-policies-0:20241128-1. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[113/113] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/114] pcre2-syntax-0:10.44-1.fc41.1 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[114/114] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/115] ncurses-base-0:6.5-2.20240629 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[115/115] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/116] authselect-0:1.5.0-8.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[116/116] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/117] libpwquality-0:1.4.5-11.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[117/117] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/118] fedora-gpg-keys-0:42-0.3.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[118/118] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/119] fedora-repos-rawhide-0:42-0.3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[119/119] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/120] json-c-0:0.18-1.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[120/120] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/121] elfutils-default-yama-scope-0 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[121/121] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/122] libpkgconf-0:2.3.0-1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[122/122] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/123] p11-kit-0:0.25.5-4.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[123/123] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/124] p11-kit-trust-0:0.25.5-4.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[124/124] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/125] cracklib-0:2.9.11-6.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[125/125] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/126] libtasn1-0:4.19.0-9.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[126/126] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/127] libxcrypt-0:4.4.37-4.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[127/127] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/128] ed-0:1.20.2-2.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[128/128] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/129] gdbm-1:1.23-7.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[129/129] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/130] gdbm-libs-1:1.23-7.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[130/130] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/131] libtirpc-0:1.3.6-1.rc3.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[131/131] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/132] krb5-libs-0:1.21.3-3.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[132/132] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/133] keyutils-libs-0:1.6.3-4.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[133/133] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/134] libverto-0:0.3.2-9.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[134/134] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/135] libffi-0:3.4.6-3.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[135/135] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/136] gmp-1:6.3.0-2.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[136/136] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/137] libcom_err-0:1.47.2-1.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[137/137] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/138] fedora-release-0:42-0.12.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[138/138] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/139] gdb-minimal-0:15.2-4.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[139/139] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/140] xxhash-libs-0:0.8.3-1.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[140/140] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/141] fedora-release-identity-basic 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[141/141] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/142] libcurl-0:8.11.1-2.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[142/142] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/143] libbrotli-0:1.1.0-5.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[143/143] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/144] libidn2-0:2.3.7-2.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[144/144] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/145] libnghttp2-0:1.64.0-1.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[145/145] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/146] libpsl-0:0.21.5-4.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[146/146] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/147] libssh-0:0.11.1-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[147/147] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/148] openldap-0:2.6.8-6.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[148/148] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/149] libunistring-0:1.1-8.fc41.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[149/149] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/150] publicsuffix-list-dafsa-0:202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[150/150] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/151] libssh-config-0:0.11.1-1.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[151/151] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/152] cyrus-sasl-lib-0:2.1.28-27.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[152/152] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/153] libevent-0:2.1.12-14.fc41.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[153/153] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/154] libtool-ltdl-0:2.5.4-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[154/154] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 810.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.s390x
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.s390x
>>> [RPM] /var/lib/mock/fedora-rawhide-s390x-1736384473.167844/root/var/cache/dn
[  2/156] Prepare transaction           100% |   2.9 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.2.1-6. 100% | 166.9 MiB/s | 170.9 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  42.0 MiB/s | 172.2 KiB |  00m00s
[  8/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-9.f 100% |  50.7 MiB/s | 726.5 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/156] Installing filesystem-0:3.18- 100% |   3.1 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing ncurses-base-0:6.5 100% |  85.9 MiB/s | 351.7 KiB |  00m00s
[ 16/156] Installing bash-0:5.2.37-1.fc 100% | 333.5 MiB/s |   8.3 MiB |  00m00s
[ 17/156] Installing ncurses-libs-0:6.5 100% | 212.5 MiB/s |   1.1 MiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% | 121.1 KiB/s | 124.0   B |  00m00s
[ 19/156] Installing glibc-common-0:2.4 100% | 152.4 MiB/s |   1.1 MiB |  00m00s
[ 20/156] Installing glibc-gconv-extra- 100% | 245.4 MiB/s |   6.6 MiB |  00m00s
[ 21/156] Installing glibc-0:2.40.9000- 100% | 182.1 MiB/s |   5.1 MiB |  00m00s
[ 22/156] Installing zlib-ng-compat-0:2 100% |   0.0   B/s | 110.3 KiB |  00m00s
[ 23/156] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  89.6 KiB |  00m00s
[ 24/156] Installing xz-libs-1:5.6.3-2. 100% | 221.9 MiB/s | 227.2 KiB |  00m00s
[ 25/156] Installing popt-0:1.19-7.fc41 100% |  73.9 MiB/s | 151.3 KiB |  00m00s
[ 26/156] Installing readline-0:8.2-11. 100% | 272.9 MiB/s | 558.9 KiB |  00m00s
[ 27/156] Installing libuuid-0:2.40.2-8 100% |   0.0   B/s |  42.3 KiB |  00m00s
[ 28/156] Installing libblkid-0:2.40.2- 100% | 280.8 MiB/s | 287.6 KiB |  00m00s
[ 29/156] Installing libstdc++-0:14.2.1 100% | 310.4 MiB/s |   3.1 MiB |  00m00s
[ 30/156] Installing libzstd-0:1.5.6-2. 100% | 285.5 MiB/s | 877.0 KiB |  00m00s
[ 31/156] Installing elfutils-libelf-0: 100% | 391.6 MiB/s |   1.2 MiB |  00m00s
[ 32/156] Installing libxcrypt-0:4.4.37 100% | 265.7 MiB/s | 272.1 KiB |  00m00s
[ 33/156] Installing gmp-1:6.3.0-2.fc42 100% | 249.1 MiB/s | 765.2 KiB |  00m00s
[ 34/156] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.3 KiB |  00m00s
[ 35/156] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  44.6 KiB |  00m00s
[ 36/156] Installing libeconf-0:0.7.5-1 100% |   0.0   B/s |  64.2 KiB |  00m00s
[ 37/156] Installing gdbm-libs-1:1.23-7 100% | 121.1 MiB/s | 124.0 KiB |  00m00s
[ 38/156] Installing mpfr-0:4.2.1-5.fc4 100% | 228.0 MiB/s | 700.4 KiB |  00m00s
[ 39/156] Installing gawk-0:5.3.0-4.fc4 100% | 259.2 MiB/s |   1.8 MiB |  00m00s
[ 40/156] Installing dwz-0:0.15-8.fc42. 100% | 312.5 MiB/s | 320.0 KiB |  00m00s
[ 41/156] Installing unzip-0:6.0-65.fc4 100% | 736.0 MiB/s |   2.2 MiB |  00m00s
[ 42/156] Installing file-libs-0:5.45-8 100% | 621.4 MiB/s |   9.9 MiB |  00m00s
[ 43/156] Installing file-0:5.45-8.fc42 100% |  98.5 MiB/s | 100.8 KiB |  00m00s
[ 44/156] Installing libcap-ng-0:0.8.5- 100% |   0.0   B/s |  78.6 KiB |  00m00s
[ 45/156] Installing audit-libs-0:4.0.3 100% | 176.3 MiB/s | 361.0 KiB |  00m00s
[ 46/156] Installing pam-libs-0:1.7.0-3 100% | 121.8 MiB/s | 124.8 KiB |  00m00s
[ 47/156] Installing libcap-0:2.71-1.fc 100% | 105.8 MiB/s | 216.7 KiB |  00m00s
[ 48/156] Installing systemd-libs-0:257 100% | 280.7 MiB/s |   2.2 MiB |  00m00s
[ 49/156] Installing libsmartcols-0:2.4 100% | 188.7 MiB/s | 193.2 KiB |  00m00s
[ 50/156] Installing libsepol-0:3.8-0.r 100% | 273.8 MiB/s | 841.0 KiB |  00m00s
[ 51/156] Installing alternatives-0:1.3 100% |   0.0   B/s |  62.2 KiB |  00m00s
[ 52/156] Installing lz4-libs-0:1.10.0- 100% | 197.6 MiB/s | 202.4 KiB |  00m00s
[ 53/156] Installing lua-libs-0:5.4.7-1 100% | 322.3 MiB/s | 330.0 KiB |  00m00s
[ 54/156] Installing libtasn1-0:4.19.0- 100% | 184.9 MiB/s | 189.3 KiB |  00m00s
[ 55/156] Installing libffi-0:3.4.6-3.f 100% |  60.3 MiB/s |  61.7 KiB |  00m00s
[ 56/156] Installing p11-kit-0:0.25.5-4 100% | 251.2 MiB/s |   2.5 MiB |  00m00s
[ 57/156] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  58.8 KiB |  00m00s
[ 58/156] Installing libunistring-0:1.1 100% | 295.6 MiB/s |   1.8 MiB |  00m00s
[ 59/156] Installing libidn2-0:2.3.7-2. 100% |  46.7 MiB/s | 334.9 KiB |  00m00s
[ 60/156] Installing crypto-policies-0: 100% |  32.0 MiB/s | 163.7 KiB |  00m00s
[ 61/156] Installing libpsl-0:0.21.5-4. 100% |   0.0   B/s |  81.4 KiB |  00m00s
[ 62/156] Installing p11-kit-trust-0:0. 100% |  93.9 MiB/s | 480.9 KiB |  00m00s
[ 63/156] Installing zstd-0:1.5.6-2.fc4 100% | 305.8 MiB/s |   1.8 MiB |  00m00s
[ 64/156] Installing zip-0:3.0-42.fc42. 100% | 236.7 MiB/s | 727.0 KiB |  00m00s
[ 65/156] Installing gdbm-1:1.23-7.fc42 100% | 229.7 MiB/s | 470.4 KiB |  00m00s
[ 66/156] Installing cyrus-sasl-lib-0:2 100% | 298.6 MiB/s |   2.4 MiB |  00m00s
[ 67/156] Installing libfdisk-0:2.40.2- 100% | 193.3 MiB/s | 395.9 KiB |  00m00s
[ 68/156] Installing libxml2-0:2.12.9-1 100% | 263.6 MiB/s |   1.8 MiB |  00m00s
[ 69/156] Installing bzip2-0:1.0.8-19.f 100% | 101.3 MiB/s | 103.7 KiB |  00m00s
[ 70/156] Installing add-determinism-0: 100% | 297.0 MiB/s |   3.3 MiB |  00m00s
[ 71/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 72/156] Installing sqlite-libs-0:3.47 100% | 264.5 MiB/s |   1.6 MiB |  00m00s
[ 73/156] Installing diffutils-0:3.10-8 100% | 271.4 MiB/s |   1.6 MiB |  00m00s
[ 74/156] Installing cpio-0:2.15-2.fc42 100% | 277.1 MiB/s |   1.1 MiB |  00m00s
[ 75/156] Installing jansson-0:2.14-1.f 100% |  92.1 MiB/s |  94.3 KiB |  00m00s
[ 76/156] Installing libgomp-0:14.2.1-6 100% | 258.2 MiB/s | 528.8 KiB |  00m00s
[ 77/156] Installing json-c-0:0.18-1.fc 100% |  82.2 MiB/s |  84.1 KiB |  00m00s
[ 78/156] Installing libpkgconf-0:2.3.0 100% |   0.0   B/s |  87.0 KiB |  00m00s
[ 79/156] Installing pkgconf-0:2.3.0-1. 100% |  92.7 MiB/s |  94.9 KiB |  00m00s
[ 80/156] Installing ed-0:1.20.2-2.fc42 100% | 143.6 MiB/s | 147.1 KiB |  00m00s
[ 81/156] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.6 KiB |  00m00s
[ 82/156] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.1 KiB |  00m00s
[ 83/156] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  65.7 KiB |  00m00s
[ 84/156] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB |  00m00s
[ 85/156] Installing libnghttp2-0:1.64. 100% | 174.9 MiB/s | 179.1 KiB |  00m00s
[ 86/156] Installing libtool-ltdl-0:2.5 100% |   0.0   B/s |  69.0 KiB |  00m00s
[ 87/156] Installing filesystem-srpm-ma 100% |   0.0   B/s |  36.8 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 681.0 KiB/s |   2.0 KiB |  00m00s
[ 89/156] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.4 KiB |  00m00s
[ 90/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 91/156] Installing pcre2-0:10.44-1.fc 100% | 223.4 MiB/s | 686.3 KiB |  00m00s
[ 92/156] Installing libselinux-0:3.8-0 100% | 199.9 MiB/s | 204.7 KiB |  00m00s
[ 93/156] Installing sed-0:4.9-3.fc41.s 100% | 215.2 MiB/s | 881.4 KiB |  00m00s
[ 94/156] Installing findutils-1:4.10.0 100% | 270.4 MiB/s |   1.9 MiB |  00m00s
[ 95/156] Installing grep-0:3.11-9.fc41 100% | 203.7 MiB/s |   1.0 MiB |  00m00s
[ 96/156] Installing xz-1:5.6.3-2.fc42. 100% | 248.1 MiB/s |   1.2 MiB |  00m00s
[ 97/156] Installing libmount-0:2.40.2- 100% | 184.0 MiB/s | 376.9 KiB |  00m00s
[ 98/156] Installing util-linux-core-0: 100% | 220.5 MiB/s |   1.5 MiB |  00m00s
[ 99/156] Installing tar-2:1.35-4.fc41. 100% | 302.0 MiB/s |   3.0 MiB |  00m00s
[100/156] Installing patch-0:2.7.6-25.f 100% | 292.8 MiB/s | 299.9 KiB |  00m00s
[101/156] Installing libsemanage-0:3.8- 100% |  99.9 MiB/s | 306.9 KiB |  00m00s
[102/156] Installing shadow-utils-2:4.1 100% | 213.0 MiB/s |   4.0 MiB |  00m00s
[103/156] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[104/156] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[105/156] Installing coreutils-common-0 100% | 349.7 MiB/s |  11.2 MiB |  00m00s
[106/156] Installing openssl-libs-1:3.2 100% | 284.2 MiB/s |   6.0 MiB |  00m00s
[107/156] Installing coreutils-0:9.5-11 100% | 260.3 MiB/s |   5.7 MiB |  00m00s
[108/156] Installing ca-certificates-0: 100% |   1.7 MiB/s |   2.4 MiB |  00m01s
[109/156] Installing krb5-libs-0:1.21.3 100% | 219.8 MiB/s |   2.4 MiB |  00m00s
[110/156] Installing libarchive-0:3.7.7 100% | 249.5 MiB/s |   1.0 MiB |  00m00s
[111/156] Installing gzip-0:1.13-2.fc41 100% | 198.4 MiB/s | 406.3 KiB |  00m00s
[112/156] Installing authselect-libs-0: 100% | 163.8 MiB/s | 838.5 KiB |  00m00s
[113/156] Installing cracklib-0:2.9.11- 100% |  85.1 MiB/s | 261.4 KiB |  00m00s
[114/156] Installing libpwquality-0:1.4 100% | 141.0 MiB/s | 433.3 KiB |  00m00s
[115/156] Installing libtirpc-0:1.3.6-1 100% | 101.1 MiB/s | 207.1 KiB |  00m00s
[116/156] Installing pam-0:1.7.0-3.fc42 100% | 132.8 MiB/s |   1.6 MiB |  00m00s
[117/156] Installing libssh-0:0.11.1-1. 100% | 286.8 MiB/s | 587.4 KiB |  00m00s
[118/156] Installing rpm-sequoia-0:1.7. 100% | 287.3 MiB/s |   3.2 MiB |  00m00s
[119/156] Installing rpm-libs-0:4.20.0- 100% | 265.3 MiB/s | 815.1 KiB |  00m00s
[120/156] Installing rpm-build-libs-0:4 100% | 214.1 MiB/s | 219.3 KiB |  00m00s
[121/156] Installing libevent-0:2.1.12- 100% | 306.8 MiB/s | 942.6 KiB |  00m00s
[122/156] Installing openldap-0:2.6.8-6 100% | 214.3 MiB/s | 658.3 KiB |  00m00s
[123/156] Installing libcurl-0:8.11.1-2 100% | 210.5 MiB/s | 862.1 KiB |  00m00s
[124/156] Installing elfutils-debuginfo 100% |  73.5 MiB/s |  75.3 KiB |  00m00s
[125/156] Installing binutils-0:2.43.50 100% | 334.3 MiB/s |  27.4 MiB |  00m00s
[126/156] Installing elfutils-0:0.192-7 100% | 293.0 MiB/s |   2.9 MiB |  00m00s
[127/156] Installing gdb-minimal-0:15.2 100% | 312.9 MiB/s |  14.7 MiB |  00m00s
[128/156] Installing debugedit-0:5.1-2. 100% | 193.9 MiB/s | 198.5 KiB |  00m00s
[129/156] Installing curl-0:8.11.1-2.fc 100% |  58.4 MiB/s | 478.3 KiB |  00m00s
[130/156] Installing rpm-0:4.20.0-1.fc4 100% | 167.0 MiB/s |   2.5 MiB |  00m00s
[131/156] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[132/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[133/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[134/156] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[135/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[136/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[137/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[138/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[139/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[140/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[141/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[142/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[143/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[144/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[145/156] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |   0.0   B/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  94.5 MiB/s | 193.5 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.0 100% | 102.0 MiB/s | 209.0 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 169.5 MiB/s |   3.7 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% | 157.9 MiB/s | 161.7 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  84.1 MiB/s |  86.1 KiB |  00m00s
[156/156] Installing info-0:7.1.1-2.fc4 100% | 244.3 KiB/s | 409.5 KiB |  00m02s
Warning: skipped OpenPGP checks for 7 packages from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.5.0-1.fc42.s390x
alternatives-1.31-1.fc42.s390x
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.3-1.fc42.s390x
authselect-1.5.0-8.fc42.s390x
authselect-libs-1.5.0-8.fc42.s390x
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.s390x
binutils-2.43.50-9.fc42.s390x
build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch
bzip2-1.0.8-19.fc41.s390x
bzip2-libs-1.0.8-19.fc41.s390x
ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch
coreutils-9.5-11.fc42.s390x
coreutils-common-9.5-11.fc42.s390x
cpio-2.15-2.fc42.s390x
cracklib-2.9.11-6.fc41.s390x
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-2.fc42.s390x
cyrus-sasl-lib-2.1.28-27.fc41.s390x
debugedit-5.1-2.fc42.s390x
diffutils-3.10-8.fc41.s390x
dwz-0.15-8.fc42.s390x
ed-1.20.2-2.fc42.s390x
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.s390x
elfutils-debuginfod-client-0.192-7.fc42.s390x
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.s390x
elfutils-libs-0.192-7.fc42.s390x
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.12.noarch
fedora-release-common-42-0.12.noarch
fedora-release-identity-basic-42-0.12.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.s390x
file-libs-5.45-8.fc42.s390x
filesystem-3.18-29.fc42.s390x
filesystem-srpm-macros-3.18-29.fc42.noarch
findutils-4.10.0-4.fc41.s390x
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.s390x
gdb-minimal-15.2-4.fc42.s390x
gdbm-1.23-7.fc42.s390x
gdbm-libs-1.23-7.fc42.s390x
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-26.fc42.s390x
glibc-common-2.40.9000-26.fc42.s390x
glibc-gconv-extra-2.40.9000-26.fc42.s390x
glibc-minimal-langpack-2.40.9000-26.fc42.s390x
gmp-6.3.0-2.fc42.s390x
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.s390x
gzip-1.13-2.fc41.s390x
info-7.1.1-2.fc42.s390x
jansson-2.14-1.fc42.s390x
json-c-0.18-1.fc42.s390x
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.s390x
krb5-libs-1.21.3-3.fc42.s390x
libacl-2.3.2-2.fc41.s390x
libarchive-3.7.7-1.fc42.s390x
libattr-2.5.2-4.fc41.s390x
libblkid-2.40.2-8.fc42.s390x
libbrotli-1.1.0-5.fc41.s390x
libcap-2.71-1.fc42.s390x
libcap-ng-0.8.5-3.fc41.s390x
libcom_err-1.47.2-1.fc42.s390x
libcurl-8.11.1-2.fc42.s390x
libeconf-0.7.5-1.fc42.s390x
libevent-2.1.12-14.fc41.s390x
libfdisk-2.40.2-8.fc42.s390x
libffi-3.4.6-3.fc42.s390x
libgcc-14.2.1-6.fc42.s390x
libgomp-14.2.1-6.fc42.s390x
libidn2-2.3.7-2.fc41.s390x
libmount-2.40.2-8.fc42.s390x
libnghttp2-1.64.0-1.fc42.s390x
libpkgconf-2.3.0-1.fc42.s390x
libpsl-0.21.5-4.fc41.s390x
libpwquality-1.4.5-11.fc41.s390x
libselinux-3.8-0.rc3.1.fc42.s390x
libsemanage-3.8-0.rc3.1.fc42.s390x
libsepol-3.8-0.rc3.1.fc42.s390x
libsmartcols-2.40.2-8.fc42.s390x
libssh-0.11.1-1.fc42.s390x
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-6.fc42.s390x
libtasn1-4.19.0-9.fc41.s390x
libtirpc-1.3.6-1.rc3.fc42.s390x
libtool-ltdl-2.5.4-1.fc42.s390x
libunistring-1.1-8.fc41.s390x
libuuid-2.40.2-8.fc42.s390x
libverto-0.3.2-9.fc41.s390x
libxcrypt-4.4.37-4.fc42.s390x
libxml2-2.12.9-1.fc42.s390x
libzstd-1.5.6-2.fc41.s390x
lua-libs-5.4.7-1.fc42.s390x
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.s390x
mpfr-4.2.1-5.fc41.s390x
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.s390x
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.s390x
openssl-libs-3.2.2-10.fc42.s390x
p11-kit-0.25.5-4.fc42.s390x
p11-kit-trust-0.25.5-4.fc42.s390x
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.s390x
pam-libs-1.7.0-3.fc42.s390x
patch-2.7.6-25.fc41.s390x
pcre2-10.44-1.fc41.1.s390x
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.s390x
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.s390x
popt-1.19-7.fc41.s390x
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.4-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.s390x
redhat-rpm-config-300-1.fc42.noarch
rpm-4.20.0-1.fc42.s390x
rpm-build-4.20.0-1.fc42.s390x
rpm-build-libs-4.20.0-1.fc42.s390x
rpm-libs-4.20.0-1.fc42.s390x
rpm-sequoia-1.7.0-3.fc42.s390x
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.s390x
setup-2.15.0-9.fc42.noarch
shadow-utils-4.17.0-2.fc42.s390x
sqlite-libs-3.47.2-1.fc42.s390x
systemd-libs-257.1-1.fc42.s390x
tar-1.35-4.fc41.s390x
unzip-6.0-65.fc42.s390x
util-linux-2.40.2-8.fc42.s390x
util-linux-core-2.40.2-8.fc42.s390x
which-2.21-42.fc41.s390x
xxhash-libs-0.8.3-1.fc42.s390x
xz-5.6.3-2.fc42.s390x
xz-libs-5.6.3-2.fc42.s390x
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.s390x
zlib-ng-compat-2.2.2-1.fc42.s390x
zstd-1.5.6-2.fc41.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721260800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-20.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1736384473.167844/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-l8m2nn8h/mmseq/mmseq.spec) Config(child) 0 minutes 16 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-20.fc42.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736384473.167844/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736384473.167844/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1736384473.167844/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.s390x
  rpm-sequoia-1.7.0-3.fc42.s390x
  dnf5-5.2.8.1-2.fc42.s390x
  dnf5-plugins-5.2.8.1-2.fc42.s390x
Finish: chroot init
Start: build phase for mmseq-1.0.11-20.fc42.src.rpm
Start: build setup for mmseq-1.0.11-20.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721260800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-20.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% |  14.8 KiB/s |   4.8 KiB |  00m00s
 Copr repository                        100% |   3.6 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version              Repository      Size
Installing:
 armadillo-devel             s390x  12.8.1-5.fc42        copr_base    7.3 MiB
 boost-devel                 s390x  1.83.0-9.fc42        fedora     143.0 MiB
 flexiblas-devel             s390x  3.4.4-3.fc41         fedora       4.8 MiB
 gcc-c++                     s390x  14.2.1-6.fc42        fedora      29.5 MiB
 gsl-devel                   s390x  2.7.1-11.fc41        fedora       1.6 MiB
 htslib-devel                s390x  1.15.1-6.fc41        fedora     411.0 KiB
 make                        s390x  1:4.4.1-9.fc42       fedora       1.9 MiB
 perl-generators             noarch 1.16-6.fc41          fedora      21.8 KiB
 zlib-ng-compat-devel        s390x  2.2.2-1.fc42         fedora     106.8 KiB
Installing dependencies:
 SuperLU                     s390x  7.0.0-1.fc42         fedora     590.1 KiB
 SuperLU-devel               s390x  7.0.0-1.fc42         fedora     103.4 KiB
 annobin-docs                noarch 12.80-1.fc42         fedora      98.6 KiB
 annobin-plugin-gcc          s390x  12.80-1.fc42         fedora     988.6 KiB
 armadillo                   s390x  12.8.1-5.fc42        copr_base  126.4 KiB
 arpack                      s390x  3.9.1-4.fc41         fedora     633.5 KiB
 arpack-devel                s390x  3.9.1-4.fc41         fedora      69.1 KiB
 autoconf                    noarch 2.72-3.fc41          fedora       2.8 MiB
 automake                    noarch 1.17-1.fc42          fedora       1.8 MiB
 boost                       s390x  1.83.0-9.fc42        fedora       1.3 KiB
 boost-atomic                s390x  1.83.0-9.fc42        fedora      15.5 KiB
 boost-chrono                s390x  1.83.0-9.fc42        fedora      31.5 KiB
 boost-container             s390x  1.83.0-9.fc42        fedora      63.5 KiB
 boost-context               s390x  1.83.0-9.fc42        fedora      11.3 KiB
 boost-contract              s390x  1.83.0-9.fc42        fedora      95.6 KiB
 boost-coroutine             s390x  1.83.0-9.fc42        fedora      19.5 KiB
 boost-date-time             s390x  1.83.0-9.fc42        fedora       7.1 KiB
 boost-fiber                 s390x  1.83.0-9.fc42        fedora      79.6 KiB
 boost-filesystem            s390x  1.83.0-9.fc42        fedora     139.8 KiB
 boost-graph                 s390x  1.83.0-9.fc42        fedora     356.0 KiB
 boost-iostreams             s390x  1.83.0-9.fc42        fedora      87.5 KiB
 boost-json                  s390x  1.83.0-9.fc42        fedora     355.8 KiB
 boost-locale                s390x  1.83.0-9.fc42        fedora     616.3 KiB
 boost-log                   s390x  1.83.0-9.fc42        fedora       1.5 MiB
 boost-math                  s390x  1.83.0-9.fc42        fedora     686.0 KiB
 boost-nowide                s390x  1.83.0-9.fc42        fedora      19.5 KiB
 boost-numpy3                s390x  1.83.0-9.fc42        fedora      51.5 KiB
 boost-program-options       s390x  1.83.0-9.fc42        fedora     275.5 KiB
 boost-python3               s390x  1.83.0-9.fc42        fedora     250.9 KiB
 boost-random                s390x  1.83.0-9.fc42        fedora      27.5 KiB
 boost-regex                 s390x  1.83.0-9.fc42        fedora     287.5 KiB
 boost-serialization         s390x  1.83.0-9.fc42        fedora     449.7 KiB
 boost-stacktrace            s390x  1.83.0-9.fc42        fedora      47.5 KiB
 boost-system                s390x  1.83.0-9.fc42        fedora       7.1 KiB
 boost-test                  s390x  1.83.0-9.fc42        fedora     650.2 KiB
 boost-thread                s390x  1.83.0-9.fc42        fedora     131.6 KiB
 boost-timer                 s390x  1.83.0-9.fc42        fedora      19.5 KiB
 boost-type_erasure          s390x  1.83.0-9.fc42        fedora      51.6 KiB
 boost-wave                  s390x  1.83.0-9.fc42        fedora     668.2 KiB
 cmake-filesystem            s390x  3.31.3-1.fc42        fedora       0.0   B
 cpp                         s390x  14.2.1-6.fc42        fedora      26.2 MiB
 emacs-filesystem            noarch 1:30.0-3.fc41        fedora       0.0   B
 expat                       s390x  2.6.4-1.fc42         fedora     308.9 KiB
 flexiblas                   s390x  3.4.4-3.fc41         fedora      48.5 KiB
 flexiblas-netlib            s390x  3.4.4-3.fc41         fedora      12.4 MiB
 flexiblas-netlib64          s390x  3.4.4-3.fc41         fedora      12.4 MiB
 flexiblas-openblas-openmp   s390x  3.4.4-3.fc41         fedora      43.1 KiB
 flexiblas-openblas-openmp64 s390x  3.4.4-3.fc41         fedora      43.2 KiB
 gcc                         s390x  14.2.1-6.fc42        fedora      78.2 MiB
 gcc-gfortran                s390x  14.2.1-6.fc42        fedora      28.2 MiB
 gcc-plugin-annobin          s390x  14.2.1-6.fc42        fedora      57.1 KiB
 glibc-devel                 s390x  2.40.9000-26.fc42    fedora       2.6 MiB
 groff-base                  s390x  1.23.0-7.fc41        fedora       4.3 MiB
 gsl                         s390x  2.7.1-11.fc41        fedora       3.7 MiB
 hdf5                        s390x  1.14.5-2.fc42        fedora       7.3 MiB
 hdf5-devel                  s390x  1.14.5-2.fc42        fedora       3.2 MiB
 htslib                      s390x  1.15.1-6.fc41        fedora       1.2 MiB
 kernel-headers              s390x  6.13.0-0.rc6.48.fc42 fedora       6.5 MiB
 libaec                      s390x  1.1.3-1.fc42         fedora     117.7 KiB
 libaec-devel                s390x  1.1.3-1.fc42         fedora      12.5 KiB
 libasan                     s390x  14.2.1-6.fc42        fedora       1.6 MiB
 libatomic                   s390x  14.2.1-6.fc42        fedora      28.3 KiB
 libb2                       s390x  0.98.1-12.fc41       fedora      42.0 KiB
 libgfortran                 s390x  14.2.1-6.fc42        fedora       2.2 MiB
 libicu                      s390x  76.1-2.fc42          fedora      36.6 MiB
 libicu-devel                s390x  76.1-2.fc42          fedora       5.0 MiB
 libmpc                      s390x  1.3.1-6.fc41         fedora     164.5 KiB
 libstdc++-devel             s390x  14.2.1-6.fc42        fedora      15.2 MiB
 libubsan                    s390x  14.2.1-6.fc42        fedora     487.2 KiB
 libxcrypt-devel             s390x  4.4.37-4.fc42        fedora      30.5 KiB
 m4                          s390x  1.4.19-10.fc42       copr_base  619.5 KiB
 metis                       s390x  5.1.0.3-6.fc41       fedora       1.1 MiB
 mpdecimal                   s390x  2.5.1-16.fc41        fedora     224.7 KiB
 ncurses                     s390x  6.5-2.20240629.fc41  fedora     641.5 KiB
 openblas                    s390x  0.3.28-2.fc42        fedora     106.6 KiB
 openblas-openmp             s390x  0.3.28-2.fc42        fedora      15.2 MiB
 openblas-openmp64           s390x  0.3.28-2.fc42        fedora      15.2 MiB
 perl-AutoLoader             noarch 5.74-512.fc42        fedora      20.5 KiB
 perl-B                      s390x  1.89-512.fc42        fedora     517.7 KiB
 perl-Carp                   noarch 1.54-511.fc41        fedora      46.6 KiB
 perl-Class-Struct           noarch 0.68-512.fc42        fedora      25.4 KiB
 perl-Data-Dumper            s390x  2.189-512.fc41       fedora     115.5 KiB
 perl-Digest                 noarch 1.20-511.fc41        fedora      35.3 KiB
 perl-Digest-MD5             s390x  2.59-5.fc41          fedora      59.6 KiB
 perl-DynaLoader             s390x  1.56-512.fc42        fedora      32.1 KiB
 perl-Encode                 s390x  4:3.21-511.fc41      fedora       9.6 MiB
 perl-Errno                  s390x  1.38-512.fc42        fedora       8.4 KiB
 perl-Exporter               noarch 5.78-511.fc41        fedora      54.3 KiB
 perl-Fcntl                  s390x  1.18-512.fc42        fedora      56.8 KiB
 perl-Fedora-VSP             noarch 0.001-35.fc41        fedora      39.7 KiB
 perl-File-Basename          noarch 2.86-512.fc42        fedora      14.0 KiB
 perl-File-Compare           noarch 1.100.800-512.fc42   fedora       5.6 KiB
 perl-File-Copy              noarch 2.41-512.fc42        fedora      19.6 KiB
 perl-File-Find              noarch 1.44-512.fc42        fedora      41.9 KiB
 perl-File-Path              noarch 2.18-511.fc41        fedora      63.5 KiB
 perl-File-Temp              noarch 1:0.231.100-511.fc41 fedora     162.3 KiB
 perl-File-stat              noarch 1.14-512.fc42        fedora      12.5 KiB
 perl-FileHandle             noarch 2.05-512.fc42        fedora       9.3 KiB
 perl-Getopt-Long            noarch 1:2.58-2.fc41        fedora     144.5 KiB
 perl-Getopt-Std             noarch 1.14-512.fc42        fedora      11.2 KiB
 perl-HTTP-Tiny              noarch 0.090-1.fc42         fedora     154.4 KiB
 perl-IO                     s390x  1.55-512.fc42        fedora     150.9 KiB
 perl-IO-Socket-IP           noarch 0.43-1.fc42          fedora     100.3 KiB
 perl-IO-Socket-SSL          noarch 2.089-1.fc42         fedora     703.3 KiB
 perl-IPC-Open3              noarch 1.22-512.fc42        fedora      22.5 KiB
 perl-MIME-Base32            noarch 1.303-21.fc41        fedora      30.7 KiB
 perl-MIME-Base64            s390x  3.16-511.fc41        fedora      45.9 KiB
 perl-Net-SSLeay             s390x  1.94-7.fc41          fedora       1.4 MiB
 perl-POSIX                  s390x  2.20-512.fc42        fedora     250.9 KiB
 perl-PathTools              s390x  3.91-511.fc41        fedora     179.8 KiB
 perl-Pod-Escapes            noarch 1:1.07-511.fc41      fedora      24.9 KiB
 perl-Pod-Perldoc            noarch 3.28.01-512.fc41     fedora     163.7 KiB
 perl-Pod-Simple             noarch 1:3.45-511.fc41      fedora     560.9 KiB
 perl-Pod-Usage              noarch 4:2.03-511.fc41      fedora      84.8 KiB
 perl-Scalar-List-Utils      s390x  5:1.68-1.fc42        fedora     152.6 KiB
 perl-SelectSaver            noarch 1.02-512.fc42        fedora       2.2 KiB
 perl-Socket                 s390x  4:2.038-511.fc41     fedora     127.8 KiB
 perl-Storable               s390x  1:3.32-511.fc41      fedora     232.2 KiB
 perl-Symbol                 noarch 1.09-512.fc42        fedora       6.8 KiB
 perl-Term-ANSIColor         noarch 5.01-512.fc41        fedora      97.5 KiB
 perl-Term-Cap               noarch 1.18-511.fc41        fedora      29.3 KiB
 perl-Text-ParseWords        noarch 3.31-511.fc41        fedora      13.6 KiB
 perl-Text-Tabs+Wrap         noarch 2024.001-511.fc41    fedora      22.6 KiB
 perl-Thread-Queue           noarch 3.14-511.fc41        fedora      28.9 KiB
 perl-Time-Local             noarch 2:1.350-511.fc41     fedora      69.0 KiB
 perl-URI                    noarch 5.31-1.fc42          fedora     257.0 KiB
 perl-base                   noarch 2.27-512.fc42        fedora      12.5 KiB
 perl-constant               noarch 1.33-512.fc41        fedora      26.2 KiB
 perl-if                     noarch 0.61.000-512.fc42    fedora       5.8 KiB
 perl-interpreter            s390x  4:5.40.0-512.fc42    fedora     122.1 KiB
 perl-libnet                 noarch 3.15-512.fc41        fedora     289.4 KiB
 perl-libs                   s390x  4:5.40.0-512.fc42    fedora      10.2 MiB
 perl-locale                 noarch 1.12-512.fc42        fedora       6.5 KiB
 perl-macros                 noarch 4:5.40.0-512.fc42    fedora       5.5 KiB
 perl-mro                    s390x  1.29-512.fc42        fedora      45.4 KiB
 perl-overload               noarch 1.37-512.fc42        fedora      71.5 KiB
 perl-overloading            noarch 0.02-512.fc42        fedora       4.8 KiB
 perl-parent                 noarch 1:0.244-1.fc42       fedora      10.3 KiB
 perl-podlators              noarch 1:6.0.2-2.fc41       fedora     317.5 KiB
 perl-threads                s390x  1:2.40-511.fc41      fedora     114.9 KiB
 perl-threads-shared         s390x  1.69-511.fc41        fedora      83.5 KiB
 perl-vars                   noarch 1.05-512.fc42        fedora       3.9 KiB
 pyproject-rpm-macros        noarch 1.16.4-1.fc42        fedora     113.0 KiB
 python-pip-wheel            noarch 24.3.1-1.fc42        fedora       1.2 MiB
 python-rpm-macros           noarch 3.13-3.fc41          fedora      22.1 KiB
 python3                     s390x  3.13.1-2.fc42        fedora      22.4 KiB
 python3-devel               s390x  3.13.1-2.fc42        fedora       1.8 MiB
 python3-libs                s390x  3.13.1-2.fc42        fedora      40.0 MiB
 python3-numpy               s390x  1:2.2.1-1.fc42       fedora      36.0 MiB
 python3-numpy-f2py          s390x  1:2.2.1-1.fc42       fedora       2.0 MiB
 python3-packaging           noarch 24.2-2.fc42          fedora     555.7 KiB
 python3-rpm-generators      noarch 14-11.fc41           fedora      81.7 KiB
 python3-rpm-macros          noarch 3.13-3.fc41          fedora       6.4 KiB
 tzdata                      noarch 2024b-1.fc42         fedora       1.6 MiB

Transaction Summary:
 Installing:       163 packages

Total size of inbound packages is 155 MiB. Need to download 63 MiB.
After this operation, 594 MiB extra will be used (install 594 MiB, remove 0 B).
[1/3] gcc-c++-0:14.2.1-6.fc42.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[2/6] make-1:4.4.1-9.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[3/8] zlib-ng-compat-devel-0:2.2.2-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 4/16] gcc-0:14.2.1-6.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 5/17] libmpc-0:1.3.1-6.fc41.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 6/18] libstdc++-devel-0:14.2.1-6.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 7/19] automake-0:1.17-1.fc42.noarch   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 8/23] perl-File-Basename-0:2.86-512.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 9/24] perl-interpreter-4:5.40.0-512.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[10/26] cmake-filesystem-0:3.31.3-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[11/58] libicu-0:76.1-2.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[12/62] cpp-0:14.2.1-6.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[13/63] glibc-devel-0:2.40.9000-26.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[14/64] libasan-0:14.2.1-6.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[15/65] libatomic-0:14.2.1-6.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[16/66] libubsan-0:14.2.1-6.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[17/67] autoconf-0:2.72-3.fc41.noarch   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[18/68] perl-Carp-0:1.54-511.fc41.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[19/69] perl-Class-Struct-0:0.68-512.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[20/70] perl-Errno-0:1.38-512.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[21/71] perl-Exporter-0:5.78-511.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[22/72] perl-File-Path-0:2.18-511.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[23/73] perl-Getopt-Long-1:2.58-2.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[24/74] perl-IO-0:1.55-512.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[25/75] perl-PathTools-0:3.91-511.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[26/76] perl-Thread-Queue-0:3.14-511.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[27/77] perl-constant-0:1.33-512.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[28/78] perl-libs-4:5.40.0-512.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
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[29/79] perl-threads-1:2.40-511.fc41.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[30/82] python3-0:3.13.1-2.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[31/86] kernel-headers-0:6.13.0-0.rc6.4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[32/87] emacs-filesystem-1:30.0-3.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[33/88] perl-Data-Dumper-0:2.189-512.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[34/89] perl-File-Compare-0:1.100.800-5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[35/90] perl-File-Copy-0:2.41-512.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[36/91] perl-File-Find-0:1.44-512.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[37/92] perl-File-Temp-1:0.231.100-511. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[38/93] perl-File-stat-0:1.14-512.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[39/94] perl-POSIX-0:2.20-512.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[40/95] perl-Text-ParseWords-0:3.31-511 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[41/96] perl-vars-0:1.05-512.fc42.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[42/97] perl-Pod-Usage-4:2.03-511.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[43/98] perl-base-0:2.27-512.fc42.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[44/99] perl-overload-0:1.37-512.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 45/100] perl-Fcntl-0:1.18-512.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 46/101] perl-SelectSaver-0:1.02-512.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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--------------------------------------------------------------------------------
[163/163] Total                         100% |   9.5 MiB/s |  62.9 MiB |  00m07s
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Warning: skipped OpenPGP checks for 3 packages from repository: copr_base
Complete!
Finish: build setup for mmseq-1.0.11-20.fc42.src.rpm
Start: rpmbuild mmseq-1.0.11-20.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721260800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.5C6ZET
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4hdWZJ
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0TajUA
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/cclq2lqB.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x41ec): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2XzSPp
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-20.fc42 --unique-debug-suffix -1.0.11-20.fc42.s390x --unique-debug-src-base mmseq-1.0.11-20.fc42.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-20.fc42.s390x
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.91RC9f
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-20.fc42.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.iSA3ue
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-20.fc42 mmseq(s390-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-20.fc42.s390x
Provides: mmseq-debugsource = 1.0.11-20.fc42 mmseq-debugsource(s390-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-20.fc42.s390x
Provides: debuginfo(build-id) = 0737b85e6ce4a2788c6f15dc33cc036768439e73 debuginfo(build-id) = 24fa87b26f15bea4f831ecc1932f6fab0ae34850 debuginfo(build-id) = 502c1537b9b026cc9c062591aeb469cb4b93381e debuginfo(build-id) = 582bf457cad86dcedf6364e9f25d534c5ac56261 debuginfo(build-id) = 5d737a9a1b9ad6161a8fcca087204574a74e3d09 debuginfo(build-id) = 81b774608c3558eeda5db2592f9af38234e2db86 debuginfo(build-id) = 8484200a5a4b6101dba0486d4e074077182fbb01 debuginfo(build-id) = a198c2545ab94547b8d57c2fefc6dc6e70ebe9dc mmseq-debuginfo = 1.0.11-20.fc42 mmseq-debuginfo(s390-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-20.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-20.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-20.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-20.fc42.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xRWCPH
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-20.fc42.src.rpm
Finish: build phase for mmseq-1.0.11-20.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1736384473.167844/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-20.fc42.src.rpm) Config(child) 1 minutes 41 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "s390x"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "src"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "s390x"
        }
    ]
}
RPMResults finished