Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1cf' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8479497-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.2 PID: 13041 Logging PID: 13042 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8479497, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'd7b1a0b47dd0c4e22564cab5ff6c4219ba18e825', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/python-bluepyopt', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-bluepyopt', 'package_version': '1.14.11-3', 'project_dirname': 'gcc-15-smoketest-3.failed.checker', 'project_name': 'gcc-15-smoketest-3.failed.checker', 'project_owner': 'dmalcolm', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3.failed.checker/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'dmalcolm/gcc-15-smoketest-3.failed.checker--dmalcolm', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'dmalcolm', 'tags': [], 'task_id': '8479497-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/python-bluepyopt /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed.checker/python-bluepyopt', '/var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt'... Running: git checkout d7b1a0b47dd0c4e22564cab5ff6c4219ba18e825 -- cmd: ['git', 'checkout', 'd7b1a0b47dd0c4e22564cab5ff6c4219ba18e825', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt rc: 0 stdout: stderr: Note: switching to 'd7b1a0b47dd0c4e22564cab5ff6c4219ba18e825'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d7b1a0b automatic import of python-bluepyopt Running: dist-git-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3.failed.checker/python-bluepyopt/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz/md5/4d1081a1e08d1996d54efbba73595ae8/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 28.2M 100 28.2M 0 0 77.5M 0 --:--:-- --:--:-- --:--:-- 77.6M INFO: Reading stdout from command: md5sum BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt/python-bluepyopt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736251236.857749 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt/python-bluepyopt.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736251236.857749 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt/python-bluepyopt.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1736251236.857749/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-bcc1a3b2-c43b-442f-8b2a-c60fcf40d903 INFO: Checking that 3b26c95bbe87cc88f475ce9c0ba4b394bf23541b10bebe9a634c9c8e61f73b10 image matches host's architecture INFO: Copy content of container 3b26c95bbe87cc88f475ce9c0ba4b394bf23541b10bebe9a634c9c8e61f73b10 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1736251236.857749/root INFO: mounting 3b26c95bbe87cc88f475ce9c0ba4b394bf23541b10bebe9a634c9c8e61f73b10 with podman image mount INFO: image 3b26c95bbe87cc88f475ce9c0ba4b394bf23541b10bebe9a634c9c8e61f73b10 as /var/lib/containers/storage/overlay/d3212d8beae72a97d426f4f4cbc9926037985c9d492b381ad2608549e5b9deb3/merged INFO: umounting image 3b26c95bbe87cc88f475ce9c0ba4b394bf23541b10bebe9a634c9c8e61f73b10 (/var/lib/containers/storage/overlay/d3212d8beae72a97d426f4f4cbc9926037985c9d492b381ad2608549e5b9deb3/merged) with podman image umount INFO: Removing image mock-bootstrap-bcc1a3b2-c43b-442f-8b2a-c60fcf40d903 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1736251236.857749/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-3.fc42.x86_64 dnf5-5.2.8.1-2.fc42.x86_64 dnf5-plugins-5.2.8.1-2.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 788.8 KiB/s | 27.6 KiB | 00m00s Copr repository 100% | 49.4 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 8.7 MiB/s | 1.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 copr_base 8.1 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-11.fc42 fedora 5.4 MiB cpio x86_64 2.15-2.fc42 copr_base 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.12 fedora 19.8 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc42 copr_base 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-26.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-2.fc42 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 300-1.fc42 fedora 186.8 KiB rpm-build x86_64 4.20.0-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.17.0-2.fc42 fedora 4.0 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-65.fc42 fedora 398.2 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.3-2.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.5.0-1.fc42 fedora 2.4 MiB alternatives x86_64 1.31-1.fc42 fedora 64.8 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-8.fc42 fedora 157.5 KiB authselect-libs x86_64 1.5.0-8.fc42 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.50-9.fc42 fedora 25.8 MiB build-reproducibility-srpm-macros noarch 0.5.0-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-4.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-11.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl x86_64 8.11.1-2.fc42 fedora 452.0 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-2.fc42 fedora 200.3 KiB dwz x86_64 0.15-8.fc42 fedora 299.2 KiB ed x86_64 1.20.2-2.fc42 copr_base 145.0 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils x86_64 0.192-7.fc42 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.192-7.fc42 fedora 81.4 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-7.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-7.fc42 fedora 662.9 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.12 fedora 0.0 B fedora-release-identity-basic noarch 42-0.12 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file x86_64 5.45-8.fc42 fedora 103.7 KiB file-libs x86_64 5.45-8.fc42 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-4.fc42 fedora 12.7 MiB gdbm x86_64 1:1.23-7.fc42 copr_base 462.4 KiB gdbm-libs x86_64 1:1.23-7.fc42 copr_base 126.8 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-26.fc42 fedora 6.7 MiB glibc-common x86_64 2.40.9000-26.fc42 fedora 1.0 MiB glibc-gconv-extra x86_64 2.40.9000-26.fc42 fedora 8.0 MiB gmp x86_64 1:6.3.0-2.fc42 copr_base 811.6 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson x86_64 2.14-1.fc42 fedora 93.1 KiB json-c x86_64 0.18-1.fc42 fedora 83.3 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-3.fc42 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.7-1.fc42 fedora 932.3 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.71-1.fc42 fedora 210.8 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.2-1.fc42 fedora 65.9 KiB libcurl x86_64 8.11.1-2.fc42 fedora 817.3 KiB libeconf x86_64 0.7.5-1.fc42 fedora 66.7 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-6.fc42 fedora 270.6 KiB libgomp x86_64 14.2.1-6.fc42 fedora 519.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.64.0-1.fc42 fedora 174.5 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.8-0.rc3.1.fc42 fedora 191.6 KiB libsemanage x86_64 3.8-0.rc3.1.fc42 fedora 305.3 KiB libsepol x86_64 3.8-0.rc3.1.fc42 fedora 812.3 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-6.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.6-1.rc3.fc42 fedora 197.6 KiB libtool-ltdl x86_64 2.5.4-1.fc42 fedora 68.1 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.37-4.fc42 fedora 269.6 KiB libxml2 x86_64 2.12.9-1.fc42 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.7-1.fc42 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-6.fc42 fedora 647.4 KiB openssl-libs x86_64 1:3.2.2-10.fc42 fedora 7.7 MiB p11-kit x86_64 0.25.5-4.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc42 fedora 403.8 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.7.0-3.fc42 fedora 1.8 MiB pam-libs x86_64 1.7.0-3.fc42 fedora 139.4 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.20.0-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 fedora 726.1 KiB rpm-sequoia x86_64 1.7.0-3.fc42 fedora 2.3 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-9.fc42 fedora 720.7 KiB sqlite-libs x86_64 3.47.2-1.fc42 fedora 1.4 MiB systemd-libs x86_64 257.1-1.fc42 fedora 2.2 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc42 fedora 88.5 KiB xz-libs x86_64 1:5.6.3-2.fc42 fedora 218.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-42.fc42 fedora 695.9 KiB zlib-ng-compat x86_64 2.2.2-1.fc42 fedora 134.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 155 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] redhat-rpm-config-0:300-1.fc42.no 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] rpm-build-0:4.20.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] unzip-0:6.0-65.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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[144/144] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/145] libidn2-0:2.3.7-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [145/145] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/146] libnghttp2-0:1.64.0-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [146/146] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/147] libpsl-0:0.21.5-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [147/147] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/148] libssh-0:0.11.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [148/148] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/149] openldap-0:2.6.8-6.fc42.x86_6 100% | 0.0 B/s | 0.0 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-------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/154] libevent-0:2.1.12-14.fc41.x86 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/155] libtool-ltdl-0:2.5.4-1.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [155/155] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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199.8 MiB/s | 818.4 KiB | 00m00s [125/157] Installing elfutils-debuginfo 100% | 40.9 MiB/s | 83.8 KiB | 00m00s [126/157] Installing elfutils-0:0.192-7 100% | 220.4 MiB/s | 2.6 MiB | 00m00s [127/157] Installing binutils-0:2.43.50 100% | 232.5 MiB/s | 25.8 MiB | 00m00s [128/157] Installing gdb-minimal-0:15.2 100% | 249.5 MiB/s | 12.7 MiB | 00m00s [129/157] Installing debugedit-0:5.1-2. 100% | 66.1 MiB/s | 203.0 KiB | 00m00s [130/157] Installing curl-0:8.11.1-2.fc 100% | 21.1 MiB/s | 454.5 KiB | 00m00s [131/157] Installing rpm-0:4.20.0-1.fc4 100% | 86.4 MiB/s | 2.5 MiB | 00m00s [132/157] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [133/157] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [134/157] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [135/157] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [136/157] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [137/157] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [138/157] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [139/157] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [140/157] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [141/157] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [142/157] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [143/157] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [144/157] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [145/157] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [146/157] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [147/157] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [148/157] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [149/157] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [150/157] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [151/157] Installing redhat-rpm-config- 100% | 47.2 MiB/s | 193.5 KiB | 00m00s [152/157] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [153/157] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [154/157] Installing util-linux-0:2.40. 100% | 88.5 MiB/s | 3.7 MiB | 00m00s [155/157] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [156/157] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s [157/157] Installing info-0:7.1.1-2.fc4 100% | 133.5 KiB/s | 362.2 KiB | 00m03s Warning: skipped OpenPGP checks for 7 packages from repository: copr_base Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-1.fc42.x86_64 alternatives-1.31-1.fc42.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-9.fc42.x86_64 build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch coreutils-9.5-11.fc42.x86_64 coreutils-common-9.5-11.fc42.x86_64 cpio-2.15-2.fc42.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-2.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc42.x86_64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.x86_64 elfutils-debuginfod-client-0.192-7.fc42.x86_64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.x86_64 elfutils-libs-0.192-7.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.12.noarch fedora-release-common-42-0.12.noarch fedora-release-identity-basic-42-0.12.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.x86_64 file-libs-5.45-8.fc42.x86_64 filesystem-3.18-29.fc42.x86_64 filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc42.x86_64 gdb-minimal-15.2-4.fc42.x86_64 gdbm-1.23-7.fc42.x86_64 gdbm-libs-1.23-7.fc42.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-26.fc42.x86_64 glibc-common-2.40.9000-26.fc42.x86_64 glibc-gconv-extra-2.40.9000-26.fc42.x86_64 glibc-minimal-langpack-2.40.9000-26.fc42.x86_64 gmp-6.3.0-2.fc42.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.18-1.fc42.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-3.fc42.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.7-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.71-1.fc42.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.2-1.fc42.x86_64 libcurl-8.11.1-2.fc42.x86_64 libeconf-0.7.5-1.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-6.fc42.x86_64 libgomp-14.2.1-6.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.8-0.rc3.1.fc42.x86_64 libsemanage-3.8-0.rc3.1.fc42.x86_64 libsepol-3.8-0.rc3.1.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.rc3.fc42.x86_64 libtool-ltdl-2.5.4-1.fc42.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.37-4.fc42.x86_64 libxml2-2.12.9-1.fc42.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.x86_64 openssl-libs-3.2.2-10.fc42.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.x86_64 pam-libs-1.7.0-3.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-300-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-3.fc42.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-9.fc42.noarch shadow-utils-4.17.0-2.fc42.x86_64 sqlite-libs-3.47.2-1.fc42.x86_64 systemd-libs-257.1-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-65.fc42.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.3-1.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.x86_64 zlib-ng-compat-2.2.2-1.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.11-3.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1736251236.857749/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-988y41kt/python-bluepyopt/python-bluepyopt.spec) Config(child) 0 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-bluepyopt-1.14.11-3.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1736251236.857749/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1736251236.857749/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1736251236.857749/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-3.fc42.x86_64 dnf5-5.2.8.1-2.fc42.x86_64 dnf5-plugins-5.2.8.1-2.fc42.x86_64 Finish: chroot init Start: build phase for python-bluepyopt-1.14.11-3.fc42.src.rpm Start: build setup for python-bluepyopt-1.14.11-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.11-3.fc42.src.rpm Updating and loading repositories: Copr repository 100% | 32.6 KiB/s | 1.5 KiB | 00m00s fedora 100% | 862.7 KiB/s | 27.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: arbor x86_64 0.9.0-10.fc42 copr_base 5.9 MiB gcc-c++ x86_64 14.2.1-6.fc42 fedora 38.1 MiB libX11-devel x86_64 1.8.10-2.fc42 fedora 1.0 MiB libXext-devel x86_64 1.3.6-2.fc41 fedora 98.9 KiB neuron-devel x86_64 8.2.2-11.fc41 fedora 471.2 KiB python3-devel x86_64 3.13.1-2.fc42 fedora 1.8 MiB python3-jupyter-client noarch 8.6.1-10.fc42 fedora 893.7 KiB python3-lfpy x86_64 2.3.2-5.fc42 fedora 1.8 MiB python3-matplotlib x86_64 3.9.4-2.fc42 fedora 21.0 MiB python3-meautility noarch 1.5.1-14.fc42 fedora 347.8 KiB python3-nbconvert noarch 7.16.4-4.fc41 fedora 1.2 MiB python3-neuron x86_64 8.2.2-11.fc41 fedora 4.7 MiB python3-papermill noarch 2.6.0-5.fc42 fedora 283.9 KiB python3-pytest noarch 8.3.4-1.fc42 fedora 20.8 MiB Installing dependencies: Lmod x86_64 8.7.55-1.fc42 fedora 1.3 MiB abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.80-1.fc42 fedora 98.6 KiB annobin-plugin-gcc x86_64 12.80-1.fc42 fedora 992.8 KiB autoconf noarch 2.72-3.fc41 fedora 2.8 MiB automake noarch 1.17-1.fc42 fedora 1.8 MiB cairo x86_64 1.18.2-2.fc42 fedora 1.7 MiB cmake-filesystem x86_64 3.31.3-1.fc42 fedora 0.0 B cpp x86_64 14.2.1-6.fc42 fedora 35.0 MiB dbus x86_64 1:1.16.0-1.fc42 fedora 0.0 B dbus-broker x86_64 36-4.fc41 fedora 382.8 KiB dbus-common noarch 1:1.16.0-1.fc42 fedora 11.2 KiB default-fonts-core-sans noarch 4.2-2.fc42 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat x86_64 2.6.4-1.fc42 fedora 285.5 KiB flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype x86_64 2.13.3-1.fc42 fedora 850.5 KiB fribidi x86_64 1.0.16-1.fc42 fedora 194.5 KiB gcc x86_64 14.2.1-6.fc42 fedora 104.3 MiB gcc-plugin-annobin x86_64 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libpng x86_64 2:1.6.44-1.fc42 fedora 245.8 KiB libpsm2 x86_64 12.0.1-1.fc42 fedora 440.0 KiB libqhull_r x86_64 1:8.0.2-5.fc41 fedora 483.4 KiB libquadmath x86_64 14.2.1-6.fc42 fedora 325.9 KiB libraqm x86_64 0.10.1-1.fc42 fedora 32.7 KiB librdmacm x86_64 54.0-3.fc42 fedora 155.0 KiB libseccomp x86_64 2.5.5-2.fc41 fedora 173.3 KiB libsodium x86_64 1.0.20-2.fc41 fedora 393.0 KiB libstdc++-devel x86_64 14.2.1-6.fc42 fedora 15.4 MiB libtiff x86_64 4.7.0-2.fc42 fedora 620.0 KiB libtool x86_64 2.5.4-1.fc42 fedora 2.7 MiB libunwind x86_64 1.8.0-5.fc42 fedora 179.5 KiB libwebp x86_64 1.5.0-1.fc42 fedora 814.4 KiB libxcb x86_64 1.17.0-3.fc42 fedora 1.2 MiB libxcb-devel x86_64 1.17.0-3.fc42 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.37-4.fc42 fedora 30.5 KiB libxslt x86_64 1.1.42-2.fc41 fedora 483.1 KiB libyaml x86_64 0.2.5-15.fc41 fedora 134.4 KiB llhttp x86_64 9.2.1-4.fc42 fedora 75.3 KiB logrotate x86_64 3.22.0-2.fc41 fedora 153.1 KiB lua x86_64 5.4.7-1.fc42 fedora 610.5 KiB lua-filesystem 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163.7 KiB perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB perl-Scalar-List-Utils x86_64 5:1.68-1.fc42 fedora 148.9 KiB perl-SelectSaver noarch 1.02-512.fc42 fedora 2.2 KiB perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB perl-Symbol noarch 1.09-512.fc42 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Thread-Queue noarch 3.14-511.fc41 fedora 28.9 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-URI noarch 5.31-1.fc42 fedora 257.0 KiB perl-base noarch 2.27-512.fc42 fedora 12.5 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-512.fc42 fedora 5.8 KiB perl-interpreter x86_64 4:5.40.0-512.fc42 fedora 122.3 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs x86_64 4:5.40.0-512.fc42 fedora 9.9 MiB perl-locale noarch 1.12-512.fc42 fedora 6.5 KiB perl-mro x86_64 1.29-512.fc42 fedora 45.6 KiB perl-overload noarch 1.37-512.fc42 fedora 71.5 KiB perl-overloading noarch 0.02-512.fc42 fedora 4.8 KiB perl-parent noarch 1:0.244-1.fc42 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-threads x86_64 1:2.40-511.fc41 fedora 115.1 KiB perl-threads-shared x86_64 1.69-511.fc41 fedora 83.7 KiB perl-vars noarch 1.05-512.fc42 fedora 3.9 KiB pixman x86_64 0.44.2-1.fc42 fedora 664.5 KiB pmix x86_64 4.2.8-3.fc41 fedora 2.0 MiB procps-ng x86_64 4.0.4-4.fc41 fedora 1.0 MiB prrte x86_64 3.0.6-1.fc42 fedora 174.9 KiB prrte-libs x86_64 3.0.6-1.fc42 fedora 1.7 MiB pugixml x86_64 1.14-1.fc42 fedora 261.5 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 fedora 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 x86_64 3.13.1-2.fc42 fedora 30.6 KiB python3-aiohappyeyeballs noarch 2.4.4-1.fc42 fedora 92.8 KiB python3-aiohttp x86_64 3.10.11-1.fc42 fedora 3.2 MiB python3-aiosignal noarch 1.3.2-1.fc42 fedora 33.4 KiB python3-ansicolors noarch 1.1.8-27.fc41 fedora 45.1 KiB python3-attrs noarch 24.3.0-2.fc42 fedora 396.8 KiB python3-beautifulsoup4 noarch 4.12.3-8.fc42 fedora 1.4 MiB python3-bleach noarch 6.2.0-1.fc42 fedora 187.5 KiB python3-cached_property noarch 2.0.1-1.fc42 fedora 34.8 KiB python3-cairo x86_64 1.25.1-5.fc41 fedora 492.5 KiB python3-charset-normalizer noarch 3.4.1-1.fc42 fedora 319.6 KiB python3-click noarch 8.1.7-6.fc41 fedora 1.1 MiB python3-contourpy x86_64 1.3.1-1.fc42 fedora 821.5 KiB python3-cycler noarch 0.11.0-13.fc41 fedora 37.6 KiB python3-cython x86_64 3.0.11-2.fc42 fedora 18.0 MiB python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB python3-defusedxml noarch 0.7.1-17.fc42 fedora 196.4 KiB python3-entrypoints noarch 0.4-7.fc42 fedora 132.0 KiB python3-fastjsonschema noarch 2.21.1-1.fc42 fedora 189.0 KiB python3-fonttools x86_64 4.55.3-2.fc42 fedora 18.1 MiB python3-frozenlist x86_64 1.5.0-2.fc42 fedora 156.2 KiB python3-h5py x86_64 3.12.1-4.fc42 copr_base 4.4 MiB python3-html5lib noarch 1:1.1-25.fc41 fedora 1.5 MiB python3-idna noarch 3.10-1.fc42 fedora 628.0 KiB python3-iniconfig noarch 1.1.1-23.fc41 fedora 20.6 KiB python3-jinja2 noarch 3.1.4-5.fc41 fedora 2.9 MiB python3-jsonschema noarch 4.19.1-6.fc41 fedora 850.0 KiB python3-jsonschema-specifications noarch 2023.11.2-6.fc41 fedora 45.8 KiB python3-jupyter-core noarch 5.7.2-7.fc42 fedora 196.8 KiB python3-jupyterlab_pygments noarch 0.3.0-7.fc41 fedora 41.5 KiB python3-kiwisolver x86_64 1.4.8-1.fc42 fedora 153.1 KiB python3-lfpykit noarch 0.5.1-5.fc41 fedora 891.7 KiB python3-libs x86_64 3.13.1-2.fc42 fedora 39.8 MiB python3-lxml x86_64 5.3.0-1.fc42 fedora 4.9 MiB python3-markupsafe x86_64 3.0.2-1.fc42 fedora 56.1 KiB python3-matplotlib-data noarch 3.9.4-2.fc42 fedora 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.4-2.fc42 fedora 7.9 MiB python3-matplotlib-tk x86_64 3.9.4-2.fc42 fedora 256.4 KiB python3-mistune noarch 3.0.2-1.fc42 fedora 315.3 KiB python3-mpi4py-mpich x86_64 4.0.1-1.fc42 fedora 3.2 MiB python3-mpi4py-openmpi x86_64 4.0.1-1.fc42 fedora 3.2 MiB python3-mpich x86_64 4.2.2-1.fc42 fedora 99.0 B python3-multidict x86_64 6.1.0-1.fc42 fedora 164.4 KiB python3-nbclient noarch 0.10.2-1.fc42 fedora 217.7 KiB python3-nbformat noarch 5.9.2-5.fc41 fedora 541.7 KiB python3-numpy x86_64 1:2.2.1-1.fc42 fedora 40.8 MiB python3-numpy-f2py x86_64 1:2.2.1-1.fc42 fedora 2.0 MiB python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB python3-openmpi x86_64 5.0.6-1.fc42 fedora 99.0 B python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB python3-pandocfilters noarch 1.5.1-3.fc41 fedora 38.6 KiB python3-pillow x86_64 11.0.0-1.fc42 fedora 3.9 MiB python3-pillow-tk x86_64 11.0.0-1.fc42 fedora 73.0 KiB python3-platformdirs noarch 4.2.2-2.fc41 fedora 168.6 KiB python3-pluggy noarch 1.5.0-1.fc41 fedora 193.2 KiB python3-pooch noarch 1.8.2-3.fc41 fedora 625.5 KiB python3-pygments noarch 2.18.0-2.fc42 fedora 10.6 MiB python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB python3-pyyaml x86_64 6.0.2-1.fc42 fedora 781.0 KiB python3-pyzmq x86_64 26.2.0-3.fc42 fedora 1.3 MiB python3-referencing noarch 0.35.1-3.fc41 fedora 326.0 KiB python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB python3-rpds-py x86_64 0.22.3-1.fc42 fedora 720.2 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-scipy x86_64 1.14.1-2.fc42 fedora 66.8 MiB python3-six noarch 1.17.0-1.fc42 fedora 116.9 KiB python3-soupsieve noarch 2.6-2.fc42 fedora 294.5 KiB python3-tenacity noarch 8.2.3-5.fc41 fedora 158.2 KiB python3-tinycss2 noarch 1.4.0-1.fc42 fedora 250.7 KiB python3-tkinter x86_64 3.13.1-2.fc42 fedora 1.9 MiB python3-tornado x86_64 6.4.1-1.fc42 fedora 5.1 MiB python3-tqdm noarch 4.67.1-1.fc42 fedora 566.8 KiB python3-traitlets noarch 5.14.3-3.fc41 fedora 966.9 KiB python3-urllib3 noarch 2.3.0-1.fc42 fedora 1.0 MiB python3-webencodings noarch 0.5.1-26.fc41 fedora 86.0 KiB python3-yarl x86_64 1.13.1-1.fc42 fedora 539.0 KiB readline-devel x86_64 8.2-11.fc42 fedora 553.0 KiB systemd x86_64 257.1-1.fc42 fedora 17.4 MiB systemd-pam x86_64 257.1-1.fc42 fedora 1.1 MiB systemd-rpm-macros noarch 257.1-1.fc42 fedora 10.7 KiB tcl x86_64 1:8.6.15-6.fc42 fedora 4.2 MiB tcsh x86_64 6.24.14-1.fc42 fedora 1.2 MiB tk x86_64 1:8.6.15-1.fc42 fedora 3.6 MiB torque-libs x86_64 6.1.3-13.fc42 fedora 458.3 KiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB ucx x86_64 1.17.0-3.fc42 fedora 2.4 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB yaksa x86_64 0.3-6.fc41 fedora 44.9 MiB zeromq x86_64 4.3.5-17.fc41 fedora 885.4 KiB Transaction Summary: Installing: 290 packages Total size of inbound packages is 220 MiB. 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kernel-headers-0:6 100% | 87.4 MiB/s | 6.6 MiB | 00m00s [ 48/292] Installing libxcrypt-devel-0: 100% | 8.0 MiB/s | 32.9 KiB | 00m00s [ 49/292] Installing glibc-devel-0:2.40 100% | 77.7 MiB/s | 2.3 MiB | 00m00s [ 50/292] Installing libstdc++-devel-0: 100% | 172.9 MiB/s | 15.6 MiB | 00m00s [ 51/292] Installing graphite2-0:1.3.14 100% | 64.3 MiB/s | 197.4 KiB | 00m00s [ 52/292] Installing dbus-common-1:1.16 100% | 315.1 KiB/s | 13.6 KiB | 00m00s [ 53/292] Installing dbus-broker-0:36-4 100% | 20.9 MiB/s | 385.3 KiB | 00m00s [ 54/292] Installing dbus-1:1.16.0-1.fc 100% | 0.0 B/s | 124.0 B | 00m00s [ 55/292] Installing libseccomp-0:2.5.5 100% | 57.0 MiB/s | 175.2 KiB | 00m00s [ 56/292] Installing systemd-pam-0:257. 100% | 109.9 MiB/s | 1.1 MiB | 00m00s [ 57/292] Installing systemd-0:257.1-1. 100% | 54.2 MiB/s | 17.5 MiB | 00m00s >>> Running post-install scriptlet: systemd-0:257.1-1.fc42.x86_64 >>> Finished post-install scriptlet: systemd-0:257.1-1.fc42.x86_64 >>> Scriptlet output: >>> Creating group 'systemd-journal' with GID 190. >>> Creating group 'systemd-oom' with GID 999. >>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and >>> [ 58/292] Installing logrotate-0:3.22.0 100% | 3.0 MiB/s | 155.7 KiB | 00m00s >>> Running post-install scriptlet: logrotate-0:3.22.0-2.fc41.x86_64 >>> Finished post-install scriptlet: logrotate-0:3.22.0-2.fc41.x86_64 >>> Scriptlet output: >>> Created symlink '/etc/systemd/system/timers.target.wants/logrotate.timer' ↠>>> [ 59/292] Installing munge-0:0.5.16-3.f 100% | 12.3 MiB/s | 352.4 KiB | 00m00s [ 60/292] Installing ncurses-c++-libs-0 100% | 39.8 MiB/s | 162.9 KiB | 00m00s [ 61/292] Installing ncurses-devel-0:6. 100% | 28.4 MiB/s | 1.0 MiB | 00m00s [ 62/292] Installing readline-devel-0:8 100% | 109.5 MiB/s | 560.5 KiB | 00m00s [ 63/292] Installing cmake-filesystem-0 100% | 1.9 MiB/s | 7.6 KiB | 00m00s [ 64/292] Installing openblas-0:0.3.28- 100% | 105.8 MiB/s | 108.3 KiB | 00m00s [ 65/292] Installing 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perl-Fcntl-0:1.18- 100% | 48.9 MiB/s | 50.1 KiB | 00m00s [117/292] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 12.9 KiB | 00m00s [118/292] Installing perl-overloading-0 100% | 5.4 MiB/s | 5.5 KiB | 00m00s [119/292] Installing perl-IO-0:1.55-512 100% | 50.5 MiB/s | 155.2 KiB | 00m00s [120/292] Installing perl-mro-0:1.29-51 100% | 45.6 MiB/s | 46.7 KiB | 00m00s [121/292] Installing perl-Pod-Usage-4:2 100% | 84.3 MiB/s | 86.3 KiB | 00m00s [122/292] Installing perl-Errno-0:1.38- 100% | 0.0 B/s | 8.8 KiB | 00m00s [123/292] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [124/292] Installing perl-constant-0:1. 100% | 26.7 MiB/s | 27.4 KiB | 00m00s [125/292] Installing perl-Scalar-List-U 100% | 49.7 MiB/s | 152.6 KiB | 00m00s [126/292] Installing perl-parent-1:0.24 100% | 10.7 MiB/s | 11.0 KiB | 00m00s [127/292] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [128/292] Installing perl-overload-0:1. 100% | 70.3 MiB/s | 71.9 KiB | 00m00s [129/292] Installing perl-MIME-Base64-0 100% | 23.6 MiB/s | 48.4 KiB | 00m00s [130/292] Installing perl-Getopt-Std-0: 100% | 11.5 MiB/s | 11.7 KiB | 00m00s [131/292] Installing perl-Getopt-Long-1 100% | 71.9 MiB/s | 147.2 KiB | 00m00s [132/292] Installing perl-Storable-1:3. 100% | 114.3 MiB/s | 234.0 KiB | 00m00s [133/292] Installing perl-Exporter-0:5. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [134/292] Installing perl-PathTools-0:3 100% | 60.1 MiB/s | 184.6 KiB | 00m00s [135/292] Installing perl-DynaLoader-0: 100% | 31.7 MiB/s | 32.5 KiB | 00m00s [136/292] Installing perl-Encode-4:3.21 100% | 214.5 MiB/s | 4.7 MiB | 00m00s [137/292] Installing perl-Carp-0:1.54-5 100% | 15.5 MiB/s | 47.7 KiB | 00m00s [138/292] Installing perl-libs-4:5.40.0 100% | 140.5 MiB/s | 10.0 MiB | 00m00s [139/292] Installing perl-interpreter-4 100% | 121.1 MiB/s | 124.0 KiB | 00m00s [140/292] Installing perl-threads-1:2.4 100% | 57.2 MiB/s | 117.2 KiB | 00m00s [141/292] Installing perl-threads-share 100% | 42.0 MiB/s | 86.0 KiB | 00m00s 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Complete! Finish: build setup for python-bluepyopt-1.14.11-3.fc42.src.rpm Start: rpmbuild python-bluepyopt-1.14.11-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.2lJClX + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + test -d /builddir/build/BUILD/python-bluepyopt-1.14.11-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-bluepyopt-1.14.11-build + /usr/bin/rm -rf /builddir/build/BUILD/python-bluepyopt-1.14.11-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cd90JS + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + rm -rf BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/467.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + cp -v /builddir/build/SOURCES/_version.py bluepyopt/_version.py '/builddir/build/SOURCES/_version.py' -> 'bluepyopt/_version.py' + sed -i '/scoop/ d' setup.py + sed -i 's/^\(.*:.*\)jupyter$/\1/' Makefile + sed -i 's/python l5pc_validate_neuron_arbor_pm.py/python3 l5pc_validate_neuron_arbor_pm.py/g' Makefile + rm -f bluepyopt/tests/test_neuroml_fcts.py + find examples/ -name .gitignore -delete + find examples/ -name dummy.inc -delete + find examples/ -type f -name '*.py' -exec sed -i 's|^#![ ]*/usr/bin/env.*$|#!/usr/bin/python3/|' '{}' ';' + find examples/ -type f -name '*.py' -exec chmod -x '{}' ';' + find examples/ -type f -name '*.mod' -exec sed -i 's/\r$//' '{}' ';' + find examples/ -type f -name '*.asc' -exec sed -i 's/\r$//' '{}' ';' + find examples/ -type f -name '*.csv' -exec sed -i 's/\r$//' '{}' ';' ++ grep '^MODSUBDIR' /usr/bin/nrnivmodl ++ cut -d = -f2 + export MODSUBDIR=x86_64 + MODSUBDIR=x86_64 + sed -i s/x86_64/x86_64/ Makefile + sed -i s/x86_64/x86_64/ bluepyopt/tests/test_l5pc.py + sed -i s/x86_64/x86_64/ bluepyopt/tests/test_stochkv.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.CE9oRW + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.11-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 986.0 KiB/s | 27.6 KiB | 00m00s Copr repository 100% | 29.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc42.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "arbor-0.9.0-10.fc42.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-10.fc42.noarch" is already installed. Package "python3-lfpy-2.3.2-5.fc42.x86_64" is already installed. Package "python3-matplotlib-3.9.4-2.fc42.x86_64" is already installed. Package "python3-meautility-1.5.1-14.fc42.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-5.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-pip noarch 24.3.1-1.fc42 fedora 11.3 MiB python3-setuptools noarch 74.1.3-4.fc42 fedora 8.4 MiB Transaction Summary: Installing: 2 packages Total size of inbound packages is 5 MiB. Need to download 5 MiB. After this operation, 20 MiB extra will be used (install 20 MiB, remove 0 B). [1/2] python3-setuptools-0:74.1.3-4.fc4 100% | 2.3 MiB/s | 2.0 MiB | 00m01s [2/2] python3-pip-0:24.3.1-1.fc42.noarc 100% | 2.8 MiB/s | 2.7 MiB | 00m01s -------------------------------------------------------------------------------- [2/2] Total 100% | 4.7 MiB/s | 4.7 MiB | 00m01s Running transaction [1/4] Verify package files 100% | 133.0 B/s | 2.0 B | 00m00s [2/4] Prepare transaction 100% | 34.0 B/s | 2.0 B | 00m00s [3/4] Installing python3-setuptools-0:7 100% | 95.1 MiB/s | 8.6 MiB | 00m00s [4/4] Installing python3-pip-0:24.3.1-1 100% | 67.9 MiB/s | 11.6 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.dH8sTx + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info creating bluepyopt.egg-info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt writing manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt-1.14.10.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 2.2.1) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: pandas >=0.18 Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: deap >=1.3.3 Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: efel >=2.13 Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: ipyparallel Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: pickleshare >=0.7.3 Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.4) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement not satisfied: Pebble >=4.6.0 Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.10.dist-info/ removed 'bluepyopt-1.14.10.dist-info/entry_points.txt' removed 'bluepyopt-1.14.10.dist-info/top_level.txt' removed 'bluepyopt-1.14.10.dist-info/METADATA' removed 'bluepyopt-1.14.10.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.10.dist-info/COPYING' removed 'bluepyopt-1.14.10.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.10.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.10.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.11-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Copr repository 100% | 47.9 KiB/s | 1.5 KiB | 00m00s fedora 100% | 1.1 MiB/s | 27.6 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc42.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "arbor-0.9.0-10.fc42.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-10.fc42.noarch" is already installed. Package "python3-lfpy-2.3.2-5.fc42.x86_64" is already installed. Package "python3-matplotlib-3.9.4-2.fc42.x86_64" is already installed. Package "python3-meautility-1.5.1-14.fc42.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-5.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-jinja2-3.1.4-5.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-deap x86_64 1.4.1-8.fc42 fedora 895.8 KiB python3-efel x86_64 5.4.0-6.fc41 fedora 551.5 KiB python3-ipyparallel noarch 9.0.0-3.fc42 fedora 1.9 MiB python3-pandas x86_64 2.2.3-1.fc42~bootstrap fedora 42.2 MiB python3-pebble noarch 5.1.0-2.fc42 fedora 208.9 KiB python3-pickleshare noarch 0.7.5-17.fc41 fedora 27.2 KiB Installing dependencies: python-jupyter-filesystem noarch 5.7.2-7.fc42 fedora 0.0 B python3-asttokens noarch 2.4.1-7.fc41 fedora 209.1 KiB python3-comm noarch 0.2.2-3.fc41 fedora 32.3 KiB python3-decorator noarch 5.1.1-13.fc42 fedora 78.4 KiB python3-executing noarch 2.1.0^20240916git3f11fdc-1.fc42 fedora 265.2 KiB python3-ipykernel noarch 6.29.3-8.fc42 fedora 953.8 KiB python3-ipython noarch 8.31.0-1.fc42 fedora 4.5 MiB python3-jedi noarch 0.19.1-10.fc41 fedora 5.6 MiB python3-matplotlib-inline noarch 0.1.7-3.fc41 fedora 39.6 KiB python3-neo noarch 0.13.4-3.fc42 fedora 6.5 MiB python3-nest-asyncio noarch 1.6.0-4.fc41 fedora 25.8 KiB python3-parso noarch 0.8.4-3.fc41 fedora 896.3 KiB python3-pexpect noarch 4.9.0-8.fc42 fedora 620.4 KiB python3-prompt-toolkit noarch 3.0.41-5.fc41 fedora 3.7 MiB python3-psutil x86_64 5.9.8-5.fc42 fedora 1.4 MiB python3-ptyprocess noarch 0.7.0-9.fc41 fedora 79.8 KiB python3-pure-eval noarch 0.2.3-1.fc41 fedora 100.3 KiB python3-pytz noarch 2024.2-1.fc42 fedora 223.7 KiB python3-quantities noarch 0.16.1-1.fc42 fedora 874.4 KiB python3-stack-data noarch 0.6.3-11.fc42 fedora 208.2 KiB python3-typing-extensions noarch 4.12.2-3.fc41 fedora 464.5 KiB python3-wcwidth noarch 0.2.13-5.fc41 fedora 559.8 KiB Transaction Summary: Installing: 28 packages Total size of inbound packages is 16 MiB. Need to download 16 MiB. After this operation, 73 MiB extra will be used (install 73 MiB, remove 0 B). [ 1/28] python3-efel-0:5.4.0-6.fc41.x86 100% | 1.0 MiB/s | 200.4 KiB | 00m00s [ 2/28] python3-ipyparallel-0:9.0.0-3.f 100% | 2.3 MiB/s | 525.3 KiB | 00m00s [ 3/28] python3-pebble-0:5.1.0-2.fc42.n 100% | 3.0 MiB/s | 81.8 KiB | 00m00s [ 4/28] python3-deap-0:1.4.1-8.fc42.x86 100% | 808.6 KiB/s | 220.0 KiB | 00m00s [ 5/28] python3-pickleshare-0:0.7.5-17. 100% | 812.9 KiB/s | 20.3 KiB | 00m00s [ 6/28] python3-typing-extensions-0:4.1 100% | 3.3 MiB/s | 93.8 KiB | 00m00s [ 7/28] python-jupyter-filesystem-0:5.7 100% | 359.3 KiB/s | 9.3 KiB | 00m00s [ 8/28] python3-decorator-0:5.1.1-13.fc 100% | 1.2 MiB/s | 31.0 KiB | 00m00s [ 9/28] python3-neo-0:0.13.4-3.fc42.noa 100% | 13.0 MiB/s | 1.4 MiB | 00m00s [10/28] python3-ipykernel-0:6.29.3-8.fc 100% | 6.8 MiB/s | 257.9 KiB | 00m00s [11/28] python3-psutil-0:5.9.8-5.fc42.x 100% | 4.2 MiB/s | 272.0 KiB | 00m00s [12/28] python3-pandas-0:2.2.3-1.fc42~b 100% | 27.6 MiB/s | 8.0 MiB | 00m00s [13/28] python3-ipython-0:8.31.0-1.fc42 100% | 11.0 MiB/s | 1.1 MiB | 00m00s [14/28] python3-pytz-0:2024.2-1.fc42.no 100% | 2.3 MiB/s | 64.4 KiB | 00m00s [15/28] python3-quantities-0:0.16.1-1.f 100% | 9.2 MiB/s | 264.4 KiB | 00m00s [16/28] python3-comm-0:0.2.2-3.fc41.noa 100% | 784.4 KiB/s | 20.4 KiB | 00m00s [17/28] python3-matplotlib-inline-0:0.1 100% | 921.9 KiB/s | 24.0 KiB | 00m00s [18/28] python3-nest-asyncio-0:1.6.0-4. 100% | 742.3 KiB/s | 19.3 KiB | 00m00s [19/28] python3-jedi-0:0.19.1-10.fc41.n 100% | 38.0 MiB/s | 1.6 MiB | 00m00s [20/28] python3-pexpect-0:4.9.0-8.fc42. 100% | 5.4 MiB/s | 177.1 KiB | 00m00s [21/28] python3-prompt-toolkit-0:3.0.41 100% | 23.1 MiB/s | 849.8 KiB | 00m00s [22/28] python3-stack-data-0:0.6.3-11.f 100% | 2.4 MiB/s | 63.6 KiB | 00m00s [23/28] python3-parso-0:0.8.4-3.fc41.no 100% | 6.3 MiB/s | 212.3 KiB | 00m00s [24/28] python3-ptyprocess-0:0.7.0-9.fc 100% | 1.4 MiB/s | 36.0 KiB | 00m00s [25/28] python3-wcwidth-0:0.2.13-5.fc41 100% | 2.0 MiB/s | 52.4 KiB | 00m00s [26/28] python3-asttokens-0:2.4.1-7.fc4 100% | 2.3 MiB/s | 62.6 KiB | 00m00s [27/28] python3-executing-0:2.1.0^20240 100% | 2.6 MiB/s | 70.2 KiB | 00m00s [28/28] python3-pure-eval-0:0.2.3-1.fc4 100% | 1.5 MiB/s | 38.4 KiB | 00m00s -------------------------------------------------------------------------------- [28/28] Total 100% | 23.5 MiB/s | 15.6 MiB | 00m01s Running transaction [ 1/30] Verify package files 100% | 509.0 B/s | 28.0 B | 00m00s [ 2/30] Prepare transaction 100% | 215.0 B/s | 28.0 B | 00m00s [ 3/30] Installing python3-matplotlib-i 100% | 14.2 MiB/s | 43.7 KiB | 00m00s [ 4/30] Installing python3-psutil-0:5.9 100% | 160.8 MiB/s | 1.4 MiB | 00m00s [ 5/30] Installing python3-decorator-0: 100% | 39.6 MiB/s | 81.1 KiB | 00m00s [ 6/30] Installing python-jupyter-files 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [ 7/30] Installing python3-pure-eval-0: 100% | 34.2 MiB/s | 105.0 KiB | 00m00s [ 8/30] Installing python3-executing-0: 100% | 66.0 MiB/s | 270.2 KiB | 00m00s [ 9/30] Installing python3-asttokens-0: 100% | 52.6 MiB/s | 215.3 KiB | 00m00s [10/30] Installing python3-stack-data-0 100% | 69.5 MiB/s | 213.5 KiB | 00m00s [11/30] Installing python3-wcwidth-0:0. 100% | 110.4 MiB/s | 565.4 KiB | 00m00s [12/30] Installing python3-prompt-toolk 100% | 86.9 MiB/s | 3.8 MiB | 00m00s [13/30] Installing python3-ptyprocess-0 100% | 27.3 MiB/s | 84.0 KiB | 00m00s [14/30] Installing python3-pexpect-0:4. 100% | 78.0 MiB/s | 638.7 KiB | 00m00s [15/30] Installing python3-parso-0:0.8. 100% | 68.5 MiB/s | 911.8 KiB | 00m00s [16/30] Installing python3-jedi-0:0.19. 100% | 35.7 MiB/s | 6.1 MiB | 00m00s [17/30] Installing python3-ipython-0:8. 100% | 113.4 MiB/s | 4.6 MiB | 00m00s [18/30] Installing python3-nest-asyncio 100% | 27.1 MiB/s | 27.8 KiB | 00m00s [19/30] Installing python3-comm-0:0.2.2 100% | 17.3 MiB/s | 35.3 KiB | 00m00s [20/30] Installing python3-ipykernel-0: 100% | 68.6 MiB/s | 983.1 KiB | 00m00s [21/30] Installing python3-quantities-0 100% | 50.1 MiB/s | 924.0 KiB | 00m00s [22/30] Installing python3-neo-0:0.13.4 100% | 94.7 MiB/s | 6.6 MiB | 00m00s [23/30] Installing python3-pytz-0:2024. 100% | 74.5 MiB/s | 229.0 KiB | 00m00s [24/30] Installing python3-typing-exten 100% | 114.0 MiB/s | 466.9 KiB | 00m00s [25/30] Installing python3-efel-0:5.4.0 100% | 54.8 MiB/s | 561.0 KiB | 00m00s [26/30] Installing python3-pandas-0:2.2 100% | 199.2 MiB/s | 42.4 MiB | 00m00s [27/30] Installing python3-ipyparallel- 100% | 89.9 MiB/s | 2.0 MiB | 00m00s [28/30] Installing python3-pickleshare- 100% | 14.3 MiB/s | 29.3 KiB | 00m00s [29/30] Installing python3-pebble-0:5.1 100% | 36.2 MiB/s | 222.2 KiB | 00m00s [30/30] Installing python3-deap-0:1.4.1 100% | 12.5 MiB/s | 912.4 KiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.V05xFD + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt-1.14.10.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 2.2.1) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pandas >=0.18 (installed: pandas 2.2.3) Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: deap >=1.3.3 (installed: deap 1.4.1) Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: efel >=2.13 (installed: efel 5.4.0) Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: ipyparallel (installed: ipyparallel 9.0.0) Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pickleshare >=0.7.3 (installed: pickleshare 0.7.5) Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.4) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Pebble >=4.6.0 (installed: Pebble 5.1.0) Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.10.dist-info/ removed 'bluepyopt-1.14.10.dist-info/entry_points.txt' removed 'bluepyopt-1.14.10.dist-info/top_level.txt' removed 'bluepyopt-1.14.10.dist-info/METADATA' removed 'bluepyopt-1.14.10.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.10.dist-info/COPYING' removed 'bluepyopt-1.14.10.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.10.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.10.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-bluepyopt-1.14.11-3.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 707.9 KiB/s | 27.6 KiB | 00m00s Copr repository 100% | 46.4 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-6.fc42.x86_64" is already installed. Package "libX11-devel-1.8.10-2.fc42.x86_64" is already installed. Package "libXext-devel-1.3.6-2.fc41.x86_64" is already installed. Package "neuron-devel-8.2.2-11.fc41.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "arbor-0.9.0-10.fc42.x86_64" is already installed. Package "python3-devel-3.13.1-2.fc42.x86_64" is already installed. Package "python3-jupyter-client-8.6.1-10.fc42.noarch" is already installed. Package "python3-lfpy-2.3.2-5.fc42.x86_64" is already installed. Package "python3-matplotlib-3.9.4-2.fc42.x86_64" is already installed. Package "python3-meautility-1.5.1-14.fc42.noarch" is already installed. Package "python3-nbconvert-7.16.4-4.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-papermill-2.6.0-5.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-deap-1.4.1-8.fc42.x86_64" is already installed. Package "python3-efel-5.4.0-6.fc41.x86_64" is already installed. Package "python3-ipyparallel-9.0.0-3.fc42.noarch" is already installed. Package "python3-jinja2-3.1.4-5.fc41.noarch" is already installed. Package "python3-neuron-8.2.2-11.fc41.x86_64" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.x86_64" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pandas-2.2.3-1.fc42~bootstrap.x86_64" is already installed. Package "python3-pebble-5.1.0-2.fc42.noarch" is already installed. Package "python3-pickleshare-0.7.5-17.fc41.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Nothing to do. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.jpUOFG + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + '[' -f setup.py ']' + echo 'python3dist(setuptools) >= 40.8' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir --output /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires -r Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt-1.14.10.dist-info' Handling numpy >=1.6 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: numpy >=1.6 (installed: numpy 2.2.1) Handling pandas >=0.18 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pandas >=0.18 (installed: pandas 2.2.3) Handling deap >=1.3.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: deap >=1.3.3 (installed: deap 1.4.1) Handling efel >=2.13 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: efel >=2.13 (installed: efel 5.4.0) Handling ipyparallel from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: ipyparallel (installed: ipyparallel 9.0.0) Handling pickleshare >=0.7.3 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: pickleshare >=0.7.3 (installed: pickleshare 0.7.5) Handling Jinja2 >=2.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Jinja2 >=2.8 (installed: Jinja2 3.1.4) Handling Pebble >=4.6.0 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: Pebble >=4.6.0 (installed: Pebble 5.1.0) Handling NEURON >=7.8 from hook generated metadata: Requires-Dist (bluepyopt) Requirement satisfied: NEURON >=7.8 (installed: NEURON 8.2.2) Handling pyneuroml >=0.5.20 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'all' Handling libNeuroML >=0.3.1 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'all' Handling LFPy >=2.3 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'all' Handling arbor >=0.7 ; extra == 'all' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'all' Handling arbor >=0.7 ; extra == 'arbor' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'arbor' Handling LFPy >=2.3 ; extra == 'lfpy' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'lfpy' Handling pyneuroml >=0.5.20 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'neuroml' Handling libNeuroML >=0.3.1 ; extra == 'neuroml' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'neuroml' Handling pyneuroml >=0.5.20 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: pyneuroml >=0.5.20 ; extra == 'tests' Handling libNeuroML >=0.3.1 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: libNeuroML >=0.3.1 ; extra == 'tests' Handling LFPy >=2.3 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: LFPy >=2.3 ; extra == 'tests' Handling arbor >=0.7 ; extra == 'tests' from hook generated metadata: Requires-Dist (bluepyopt) Ignoring alien requirement: arbor >=0.7 ; extra == 'tests' + cat /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-buildrequires + rm -rfv bluepyopt-1.14.10.dist-info/ removed 'bluepyopt-1.14.10.dist-info/entry_points.txt' removed 'bluepyopt-1.14.10.dist-info/top_level.txt' removed 'bluepyopt-1.14.10.dist-info/METADATA' removed 'bluepyopt-1.14.10.dist-info/LICENSE.txt' removed 'bluepyopt-1.14.10.dist-info/COPYING' removed 'bluepyopt-1.14.10.dist-info/COPYING.lesser' removed 'bluepyopt-1.14.10.dist-info/AUTHORS.txt' removed directory 'bluepyopt-1.14.10.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9amDTo + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir Processing /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/versioneer.py:432: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY["git"] = ''' Warning: 'keywords' should be a list, got type 'tuple' running dist_info creating /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info writing /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-modern-metadata-a2lqv81t/bluepyopt-1.14.10.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: bluepyopt Building wheel for bluepyopt (pyproject.toml): started Running command Building wheel for bluepyopt (pyproject.toml) Warning: 'keywords' should be a list, got type 'tuple' running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/bluepyopt copying bluepyopt/__init__.py -> build/lib/bluepyopt copying bluepyopt/_version.py -> build/lib/bluepyopt copying bluepyopt/api.py -> build/lib/bluepyopt copying bluepyopt/evaluators.py -> build/lib/bluepyopt copying bluepyopt/objectives.py -> build/lib/bluepyopt copying bluepyopt/optimisations.py -> build/lib/bluepyopt copying bluepyopt/parameters.py -> build/lib/bluepyopt copying bluepyopt/stoppingCriteria.py -> build/lib/bluepyopt copying bluepyopt/tools.py -> build/lib/bluepyopt creating build/lib/bluepyopt/deapext copying bluepyopt/deapext/CMA_MO.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/CMA_SO.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/__init__.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/algorithms.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/hype.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/optimisations.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/optimisationsCMA.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/stoppingCriteria.py -> build/lib/bluepyopt/deapext copying bluepyopt/deapext/utils.py -> build/lib/bluepyopt/deapext creating build/lib/bluepyopt/ephys copying bluepyopt/ephys/__init__.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/acc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/base.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/create_acc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/create_hoc.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/efeatures.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/evaluators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/extra_features_utils.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/locations.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/mechanisms.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/models.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/morphologies.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/objectives.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/objectivescalculators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/parameters.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/protocols.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/recordings.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/responses.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/serializer.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/simulators.py -> build/lib/bluepyopt/ephys copying bluepyopt/ephys/stimuli.py -> build/lib/bluepyopt/ephys creating build/lib/bluepyopt/ipyp copying bluepyopt/ipyp/__init__.py -> build/lib/bluepyopt/ipyp copying bluepyopt/ipyp/bpopt_tasksdb.py -> build/lib/bluepyopt/ipyp creating build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/__init__.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/biophys.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/cell.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/morphology.py -> build/lib/bluepyopt/neuroml copying bluepyopt/neuroml/simulation.py -> build/lib/bluepyopt/neuroml creating build/lib/bluepyopt/tests copying bluepyopt/tests/__init__.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/disable_simplecell_scoop.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_bluepyopt.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_evaluators.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_l5pc.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_lfpy.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_parameters.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_simplecell.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_stochkv.py -> build/lib/bluepyopt/tests copying bluepyopt/tests/test_tools.py -> build/lib/bluepyopt/tests creating build/lib/bluepyopt/deapext/tools copying bluepyopt/deapext/tools/__init__.py -> build/lib/bluepyopt/deapext/tools copying bluepyopt/deapext/tools/selIBEA.py -> build/lib/bluepyopt/deapext/tools creating build/lib/bluepyopt/ephys/examples copying bluepyopt/ephys/examples/__init__.py -> build/lib/bluepyopt/ephys/examples creating build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/__init__.py -> build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/acc_iexpr.py -> build/lib/bluepyopt/ephys/parameterscalers copying bluepyopt/ephys/parameterscalers/parameterscalers.py -> build/lib/bluepyopt/ephys/parameterscalers creating build/lib/bluepyopt/ephys/examples/simplecell copying bluepyopt/ephys/examples/simplecell/__init__.py -> build/lib/bluepyopt/ephys/examples/simplecell copying bluepyopt/ephys/examples/simplecell/simplecell.py -> build/lib/bluepyopt/ephys/examples/simplecell creating build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/__init__.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/deapext_test_utils.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_algorithms.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_hype.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_optimisations.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_optimisationsCMA.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_selIBEA.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_stoppingCriteria.py -> build/lib/bluepyopt/tests/test_deapext copying bluepyopt/tests/test_deapext/test_utils.py -> build/lib/bluepyopt/tests/test_deapext creating build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/__init__.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_acc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_create_acc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_create_hoc.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_evaluators.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_extra_features_utils.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_features.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_init.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_locations.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_mechanisms.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_models.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_morphologies.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_objectives.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_parameters.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_parameterscalers.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_protocols.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_recordings.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_serializer.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_simulators.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/test_stimuli.py -> build/lib/bluepyopt/tests/test_ephys copying bluepyopt/tests/test_ephys/utils.py -> build/lib/bluepyopt/tests/test_ephys creating build/lib/bluepyopt/tests/test_ephys/testmodels copying bluepyopt/tests/test_ephys/testmodels/__init__.py -> build/lib/bluepyopt/tests/test_ephys/testmodels copying bluepyopt/tests/test_ephys/testmodels/dummycells.py -> build/lib/bluepyopt/tests/test_ephys/testmodels creating build/lib/bluepyopt/ephys/static copying bluepyopt/ephys/static/arbor_mechanisms.json -> build/lib/bluepyopt/ephys/static creating build/lib/bluepyopt/ephys/templates copying bluepyopt/ephys/templates/cell_template.jinja2 -> build/lib/bluepyopt/ephys/templates creating build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/_json_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/decor_acc_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2 -> build/lib/bluepyopt/ephys/templates/acc copying bluepyopt/ephys/examples/simplecell/simple.swc -> build/lib/bluepyopt/ephys/examples/simplecell creating build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms copying bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml -> build/lib/bluepyopt/neuroml/NeuroML2_mechanisms UPDATING build/lib/bluepyopt/_version.py set build/lib/bluepyopt/_version.py to '1.14.10' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/bluepyopt copying build/lib/bluepyopt/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/api.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/evaluators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/objectives.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/optimisations.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/parameters.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/./bluepyopt copying build/lib/bluepyopt/tools.py -> build/bdist.linux-x86_64/wheel/./bluepyopt creating build/bdist.linux-x86_64/wheel/bluepyopt/deapext copying build/lib/bluepyopt/deapext/CMA_MO.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/CMA_SO.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/algorithms.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/hype.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/optimisations.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/optimisationsCMA.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext copying build/lib/bluepyopt/deapext/utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext creating build/bdist.linux-x86_64/wheel/bluepyopt/deapext/tools copying build/lib/bluepyopt/deapext/tools/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext/tools copying build/lib/bluepyopt/deapext/tools/selIBEA.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/deapext/tools creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys copying build/lib/bluepyopt/ephys/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/acc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/base.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/create_acc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/create_hoc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/efeatures.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/evaluators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/extra_features_utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/locations.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/mechanisms.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/models.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/morphologies.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/objectives.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/objectivescalculators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/parameters.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/protocols.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/recordings.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/responses.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/serializer.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/simulators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys copying build/lib/bluepyopt/ephys/stimuli.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples copying build/lib/bluepyopt/ephys/examples/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/examples creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/simplecell.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/examples/simplecell copying build/lib/bluepyopt/ephys/examples/simplecell/simple.swc -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/examples/simplecell creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/acc_iexpr.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/parameterscalers copying build/lib/bluepyopt/ephys/parameterscalers/parameterscalers.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/parameterscalers creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/static copying build/lib/bluepyopt/ephys/static/arbor_mechanisms.json -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/static creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates copying build/lib/bluepyopt/ephys/templates/cell_template.jinja2 -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/templates creating build/bdist.linux-x86_64/wheel/bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/_json_template.jinja2 -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/decor_acc_template.jinja2 -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/templates/acc copying build/lib/bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2 -> build/bdist.linux-x86_64/wheel/./bluepyopt/ephys/templates/acc creating build/bdist.linux-x86_64/wheel/bluepyopt/ipyp copying build/lib/bluepyopt/ipyp/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ipyp copying build/lib/bluepyopt/ipyp/bpopt_tasksdb.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/ipyp creating build/bdist.linux-x86_64/wheel/bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/biophys.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/cell.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/morphology.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml copying build/lib/bluepyopt/neuroml/simulation.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml creating build/bdist.linux-x86_64/wheel/bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms copying build/lib/bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml -> build/bdist.linux-x86_64/wheel/./bluepyopt/neuroml/NeuroML2_mechanisms creating build/bdist.linux-x86_64/wheel/bluepyopt/tests copying build/lib/bluepyopt/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/disable_simplecell_scoop.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_bluepyopt.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_evaluators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_l5pc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_lfpy.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_parameters.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_simplecell.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_stochkv.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests copying build/lib/bluepyopt/tests/test_tools.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/deapext_test_utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_algorithms.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_hype.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_optimisations.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_optimisationsCMA.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_selIBEA.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_stoppingCriteria.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext copying build/lib/bluepyopt/tests/test_deapext/test_utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_deapext creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_acc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_create_acc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_create_hoc.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_evaluators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_extra_features_utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_features.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_init.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_locations.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_mechanisms.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_models.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_morphologies.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_objectives.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_parameters.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_parameterscalers.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_protocols.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_recordings.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_serializer.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_simulators.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/test_stimuli.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys copying build/lib/bluepyopt/tests/test_ephys/utils.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys creating build/bdist.linux-x86_64/wheel/bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/tests/test_ephys/testmodels/__init__.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/tests/test_ephys/testmodels/dummycells.py -> build/bdist.linux-x86_64/wheel/./bluepyopt/tests/test_ephys/testmodels copying build/lib/bluepyopt/_version.py -> build/bdist.linux-x86_64/wheel/./bluepyopt running install_egg_info running egg_info writing bluepyopt.egg-info/PKG-INFO writing dependency_links to bluepyopt.egg-info/dependency_links.txt writing entry points to bluepyopt.egg-info/entry_points.txt writing requirements to bluepyopt.egg-info/requires.txt writing top-level names to bluepyopt.egg-info/top_level.txt reading manifest file 'bluepyopt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 9: unknown action 'include.txt' adding license file 'LICENSE.txt' adding license file 'COPYING' adding license file 'COPYING.lesser' adding license file 'AUTHORS.txt' writing manifest file 'bluepyopt.egg-info/SOURCES.txt' Copying bluepyopt.egg-info to build/bdist.linux-x86_64/wheel/./bluepyopt-1.14.10-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/bluepyopt-1.14.10.dist-info/WHEEL creating '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir/pip-wheel-b7bzyeui/.tmp-uwi7dqmw/bluepyopt-1.14.10-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'bluepyopt/__init__.py' adding 'bluepyopt/_version.py' adding 'bluepyopt/api.py' adding 'bluepyopt/evaluators.py' adding 'bluepyopt/objectives.py' adding 'bluepyopt/optimisations.py' adding 'bluepyopt/parameters.py' adding 'bluepyopt/stoppingCriteria.py' adding 'bluepyopt/tools.py' adding 'bluepyopt/deapext/CMA_MO.py' adding 'bluepyopt/deapext/CMA_SO.py' adding 'bluepyopt/deapext/__init__.py' adding 'bluepyopt/deapext/algorithms.py' adding 'bluepyopt/deapext/hype.py' adding 'bluepyopt/deapext/optimisations.py' adding 'bluepyopt/deapext/optimisationsCMA.py' adding 'bluepyopt/deapext/stoppingCriteria.py' adding 'bluepyopt/deapext/utils.py' adding 'bluepyopt/deapext/tools/__init__.py' adding 'bluepyopt/deapext/tools/selIBEA.py' adding 'bluepyopt/ephys/__init__.py' adding 'bluepyopt/ephys/acc.py' adding 'bluepyopt/ephys/base.py' adding 'bluepyopt/ephys/create_acc.py' adding 'bluepyopt/ephys/create_hoc.py' adding 'bluepyopt/ephys/efeatures.py' adding 'bluepyopt/ephys/evaluators.py' adding 'bluepyopt/ephys/extra_features_utils.py' adding 'bluepyopt/ephys/locations.py' adding 'bluepyopt/ephys/mechanisms.py' adding 'bluepyopt/ephys/models.py' adding 'bluepyopt/ephys/morphologies.py' adding 'bluepyopt/ephys/objectives.py' adding 'bluepyopt/ephys/objectivescalculators.py' adding 'bluepyopt/ephys/parameters.py' adding 'bluepyopt/ephys/protocols.py' adding 'bluepyopt/ephys/recordings.py' adding 'bluepyopt/ephys/responses.py' adding 'bluepyopt/ephys/serializer.py' adding 'bluepyopt/ephys/simulators.py' adding 'bluepyopt/ephys/stimuli.py' adding 'bluepyopt/ephys/examples/__init__.py' adding 'bluepyopt/ephys/examples/simplecell/__init__.py' adding 'bluepyopt/ephys/examples/simplecell/simple.swc' adding 'bluepyopt/ephys/examples/simplecell/simplecell.py' adding 'bluepyopt/ephys/parameterscalers/__init__.py' adding 'bluepyopt/ephys/parameterscalers/acc_iexpr.py' adding 'bluepyopt/ephys/parameterscalers/parameterscalers.py' adding 'bluepyopt/ephys/static/arbor_mechanisms.json' adding 'bluepyopt/ephys/templates/cell_template.jinja2' adding 'bluepyopt/ephys/templates/acc/_json_template.jinja2' adding 'bluepyopt/ephys/templates/acc/decor_acc_template.jinja2' adding 'bluepyopt/ephys/templates/acc/label_dict_acc_template.jinja2' adding 'bluepyopt/ipyp/__init__.py' adding 'bluepyopt/ipyp/bpopt_tasksdb.py' adding 'bluepyopt/neuroml/__init__.py' adding 'bluepyopt/neuroml/biophys.py' adding 'bluepyopt/neuroml/cell.py' adding 'bluepyopt/neuroml/morphology.py' adding 'bluepyopt/neuroml/simulation.py' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca_HVA.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ca_LVAst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Ih.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Im.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/K_Pst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/K_Tst.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/KdShu2007.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/NaTa_t.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/NaTs2_t.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/Nap_Et2.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/SK_E2.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/SKv3_1.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/StochKv_deterministic.channel.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/baseCaDynamics_E2_NML2.nml' adding 'bluepyopt/neuroml/NeuroML2_mechanisms/pas.channel.nml' adding 'bluepyopt/tests/__init__.py' adding 'bluepyopt/tests/disable_simplecell_scoop.py' adding 'bluepyopt/tests/test_bluepyopt.py' adding 'bluepyopt/tests/test_evaluators.py' adding 'bluepyopt/tests/test_l5pc.py' adding 'bluepyopt/tests/test_lfpy.py' adding 'bluepyopt/tests/test_parameters.py' adding 'bluepyopt/tests/test_simplecell.py' adding 'bluepyopt/tests/test_stochkv.py' adding 'bluepyopt/tests/test_tools.py' adding 'bluepyopt/tests/test_deapext/__init__.py' adding 'bluepyopt/tests/test_deapext/deapext_test_utils.py' adding 'bluepyopt/tests/test_deapext/test_algorithms.py' adding 'bluepyopt/tests/test_deapext/test_hype.py' adding 'bluepyopt/tests/test_deapext/test_optimisations.py' adding 'bluepyopt/tests/test_deapext/test_optimisationsCMA.py' adding 'bluepyopt/tests/test_deapext/test_selIBEA.py' adding 'bluepyopt/tests/test_deapext/test_stoppingCriteria.py' adding 'bluepyopt/tests/test_deapext/test_utils.py' adding 'bluepyopt/tests/test_ephys/__init__.py' adding 'bluepyopt/tests/test_ephys/test_acc.py' adding 'bluepyopt/tests/test_ephys/test_create_acc.py' adding 'bluepyopt/tests/test_ephys/test_create_hoc.py' adding 'bluepyopt/tests/test_ephys/test_evaluators.py' adding 'bluepyopt/tests/test_ephys/test_extra_features_utils.py' adding 'bluepyopt/tests/test_ephys/test_features.py' adding 'bluepyopt/tests/test_ephys/test_init.py' adding 'bluepyopt/tests/test_ephys/test_locations.py' adding 'bluepyopt/tests/test_ephys/test_mechanisms.py' adding 'bluepyopt/tests/test_ephys/test_models.py' adding 'bluepyopt/tests/test_ephys/test_morphologies.py' adding 'bluepyopt/tests/test_ephys/test_objectives.py' adding 'bluepyopt/tests/test_ephys/test_parameters.py' adding 'bluepyopt/tests/test_ephys/test_parameterscalers.py' adding 'bluepyopt/tests/test_ephys/test_protocols.py' adding 'bluepyopt/tests/test_ephys/test_recordings.py' adding 'bluepyopt/tests/test_ephys/test_serializer.py' adding 'bluepyopt/tests/test_ephys/test_simulators.py' adding 'bluepyopt/tests/test_ephys/test_stimuli.py' adding 'bluepyopt/tests/test_ephys/utils.py' adding 'bluepyopt/tests/test_ephys/testmodels/__init__.py' adding 'bluepyopt/tests/test_ephys/testmodels/dummycells.py' adding 'bluepyopt-1.14.10.dist-info/AUTHORS.txt' adding 'bluepyopt-1.14.10.dist-info/COPYING' adding 'bluepyopt-1.14.10.dist-info/COPYING.lesser' adding 'bluepyopt-1.14.10.dist-info/LICENSE.txt' adding 'bluepyopt-1.14.10.dist-info/METADATA' adding 'bluepyopt-1.14.10.dist-info/WHEEL' adding 'bluepyopt-1.14.10.dist-info/entry_points.txt' adding 'bluepyopt-1.14.10.dist-info/top_level.txt' adding 'bluepyopt-1.14.10.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for bluepyopt (pyproject.toml): finished with status 'done' Created wheel for bluepyopt: filename=bluepyopt-1.14.10-py3-none-any.whl size=208270 sha256=d35da3dbfa7ace3189351c30c2e71b61953583a8c6dc01f97f8f85bd50883680 Stored in directory: /builddir/.cache/pip/wheels/1c/b7/66/bea8bae800ded8bd4bf4a24b904ac47ecdb7e949d848d2c647 Successfully built bluepyopt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Vym7nc + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + '[' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-bluepyopt-1.14.11-build + mkdir /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e ++ xargs basename --multiple ++ ls /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir/bluepyopt-1.14.10-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=bluepyopt==1.14.10 + '[' -z bluepyopt==1.14.10 ']' + TMPDIR=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir bluepyopt==1.14.10 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/pyproject-wheeldir Processing ./pyproject-wheeldir/bluepyopt-1.14.10-py3-none-any.whl Installing collected packages: bluepyopt Creating /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin changing mode of /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin/bpopt_tasksdb to 755 Successfully installed bluepyopt-1.14.10 + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin/bpopt_tasksdb /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin/bpopt_tasksdb: updating + rm -rfv /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + site_dirs+=("/usr/lib/python3.13/site-packages") + '[' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT --record /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/RECORD --output /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/RECORD removed '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/REQUESTED removed '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt-1.14.10.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-record --prefix /usr -l bluepyopt + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/deapext/tools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_features.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_create_acc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_create_hoc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_mechanisms.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_locations.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_evaluators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_parameters.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_parameterscalers.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_models.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_morphologies.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_objectives.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_recordings.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_serializer.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_simulators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_protocols.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/disable_simplecell_scoop.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_bluepyopt.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_evaluators.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/test_ephys/__pycache__/test_stimuli.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_lfpy.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_l5pc.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_parameters.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_simplecell.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_stochkv.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_tools.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_evaluators.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/disable_simplecell_scoop.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_lfpy.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_tools.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_l5pc.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages/bluepyopt/tests/__pycache__/test_parameters.cpython-313.opt-1.pyc: replacing with normalized version 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rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-bluepyopt-1.14.11-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.MxPaMI + umask 022 + cd /builddir/build/BUILD/python-bluepyopt-1.14.11-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e + '[' '!' -f /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages + _PYTHONSITE=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-bluepyopt-1.14.11-build/python-bluepyopt-1.14.11-3.fc42.x86_64-pyproject-modules -e '*neuroml*' -e 'bluepyopt.tests*' Check import: bluepyopt Check import: bluepyopt.api Check import: bluepyopt.deapext Check import: bluepyopt.deapext.CMA_MO Check import: bluepyopt.deapext.CMA_SO Check import: bluepyopt.deapext.algorithms Check import: bluepyopt.deapext.hype Check import: bluepyopt.deapext.optimisations Check import: bluepyopt.deapext.optimisationsCMA Check import: bluepyopt.deapext.stoppingCriteria Check import: bluepyopt.deapext.tools Check import: bluepyopt.deapext.tools.selIBEA Check import: bluepyopt.deapext.utils Check import: bluepyopt.ephys Check import: bluepyopt.ephys.acc Check import: bluepyopt.ephys.base Check import: bluepyopt.ephys.create_acc Check import: bluepyopt.ephys.create_hoc Check import: bluepyopt.ephys.efeatures Check import: bluepyopt.ephys.evaluators Check import: bluepyopt.ephys.examples Check import: bluepyopt.ephys.examples.simplecell Check import: bluepyopt.ephys.examples.simplecell.simplecell Check import: bluepyopt.ephys.extra_features_utils Check import: bluepyopt.ephys.locations Check import: bluepyopt.ephys.mechanisms Check import: bluepyopt.ephys.models Check import: bluepyopt.ephys.morphologies Check import: bluepyopt.ephys.objectives Check import: bluepyopt.ephys.objectivescalculators Check import: bluepyopt.ephys.parameters Check import: bluepyopt.ephys.parameterscalers Check import: bluepyopt.ephys.parameterscalers.acc_iexpr Check import: bluepyopt.ephys.parameterscalers.parameterscalers Check import: bluepyopt.ephys.protocols Check import: bluepyopt.ephys.recordings Check import: bluepyopt.ephys.responses Check import: bluepyopt.ephys.serializer Check import: bluepyopt.ephys.simulators Check import: bluepyopt.ephys.stimuli Check import: bluepyopt.evaluators Check import: bluepyopt.ipyp Check import: bluepyopt.ipyp.bpopt_tasksdb Check import: bluepyopt.objectives Check import: bluepyopt.optimisations Check import: bluepyopt.parameters Check import: bluepyopt.stoppingCriteria Check import: bluepyopt.tools + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/make -O -j2 V=1 VERBOSE=1 stochkv_prepare l5pc_prepare sc_prepare meta_prepare cd examples/stochkv && ls mechanisms && nrnivmodl mechanisms StochKv.mod StochKv3.mod /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv Mod files: "mechanisms/mechanisms/StochKv.mod" "mechanisms/mechanisms/StochKv3.mod" Creating 'x86_64' directory for .o files. make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' -> NMODL ../mechanisms/StochKv.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "StochKv.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' -> NMODL ../mechanisms/StochKv3.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "StochKv3.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' -> Compiling mod_func.cpp gcc -DHAVE_CONFIG_H -I. -I/usr/include -fPIC -c mod_func.cpp -o mod_func.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' -> Compiling StochKv3.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c StochKv3.c -o StochKv3.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' -> Compiling StochKv.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c StochKv.c -o StochKv.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' => LINKING shared library ./libnrnmech.so g++ -std=c++11 -shared -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./StochKv.o ./StochKv3.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext g++ -std=c++11 -I /usr/include -I /usr/include/nrncvode -DAUTO_DLOPEN_NRNMECH=0 /usr/share/nrn/nrnmain.cpp -o ./special \ -L . -lnrnmech -L/usr/lib -lnrniv -lnrnmech -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64' Successfully created x86_64/special make[1]: warning: -j4 forced in submake: resetting jobserver mode. Translating StochKv.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64/StochKv.c Warning: bnl undefined. (declared within VERBATIM?) Warning: value undefined. (declared within VERBATIM?) Thread Safe Translating StochKv3.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/stochkv/x86_64/StochKv3.c Warning: bnl undefined. (declared within VERBATIM?) Warning: value undefined. (declared within VERBATIM?) Thread Safe cd examples/l5pc && nrnivmodl mechanisms /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc Mod files: "mechanisms/mechanisms/CaDynamics_E2.mod" "mechanisms/mechanisms/Ca_HVA.mod" "mechanisms/mechanisms/Ca_LVAst.mod" "mechanisms/mechanisms/Ih.mod" "mechanisms/mechanisms/Im.mod" "mechanisms/mechanisms/K_Pst.mod" "mechanisms/mechanisms/K_Tst.mod" "mechanisms/mechanisms/NaTa_t.mod" "mechanisms/mechanisms/NaTs2_t.mod" "mechanisms/mechanisms/Nap_Et2.mod" "mechanisms/mechanisms/SK_E2.mod" "mechanisms/mechanisms/SKv3_1.mod" Creating 'x86_64' directory for .o files. make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/CaDynamics_E2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "CaDynamics_E2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ca_LVAst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ca_LVAst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ca_HVA.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ca_HVA.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/Ih.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Ih.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/Im.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Im.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/K_Pst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "K_Pst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/K_Tst.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "K_Tst.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/NaTa_t.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "NaTa_t.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/Nap_Et2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "Nap_Et2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/NaTs2_t.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "NaTs2_t.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/SK_E2.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "SK_E2.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> NMODL ../mechanisms/SKv3_1.mod (cd "../mechanisms"; MODLUNIT=/usr/share/nrn/lib/nrnunits.lib /usr/bin/nocmodl "SKv3_1.mod" -o "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64") make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling mod_func.cpp gcc -DHAVE_CONFIG_H -I. -I/usr/include -fPIC -c mod_func.cpp -o mod_func.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling CaDynamics_E2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c CaDynamics_E2.c -o CaDynamics_E2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling Ih.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ih.c -o Ih.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling Ca_HVA.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ca_HVA.c -o Ca_HVA.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling Ca_LVAst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Ca_LVAst.c -o Ca_LVAst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling Im.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Im.c -o Im.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling NaTa_t.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c NaTa_t.c -o NaTa_t.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling K_Tst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c K_Tst.c -o K_Tst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling K_Pst.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c K_Pst.c -o K_Pst.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling NaTs2_t.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c NaTs2_t.c -o NaTs2_t.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling Nap_Et2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c Nap_Et2.c -o Nap_Et2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling SKv3_1.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c SKv3_1.c -o SKv3_1.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' -> Compiling SK_E2.c gcc -DHAVE_CONFIG_H -I"../mechanisms" -I. -I/usr/include -fPIC -c SK_E2.c -o SK_E2.o make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' => LINKING shared library ./libnrnmech.so g++ -std=c++11 -shared -I /usr/include -o ./libnrnmech.so -Wl,-soname,libnrnmech.so \ ./mod_func.o ./CaDynamics_E2.o ./Ca_HVA.o ./Ca_LVAst.o ./Ih.o ./Im.o ./K_Pst.o ./K_Tst.o ./NaTa_t.o ./NaTs2_t.o ./Nap_Et2.o ./SK_E2.o ./SKv3_1.o -L/usr/lib -lnrniv -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext rm -f ./.libs/libnrnmech.so ; mkdir -p ./.libs ; cp ./libnrnmech.so ./.libs/libnrnmech.so make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' make[1]: Entering directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' => LINKING executable ./special LDFLAGS are: -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext g++ -std=c++11 -I /usr/include -I /usr/include/nrncvode -DAUTO_DLOPEN_NRNMECH=0 /usr/share/nrn/nrnmain.cpp -o ./special \ -L . -lnrnmech -L/usr/lib -lnrniv -lnrnmech -lreadline -lcurses -lform -lpython3.13 -lX11 -lXext make[1]: Leaving directory '/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64' Successfully created x86_64/special make[1]: warning: -j4 forced in submake: resetting jobserver mode. Translating CaDynamics_E2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/CaDynamics_E2.c Thread Safe Translating Ca_LVAst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/Ca_LVAst.c Thread Safe Translating Ca_HVA.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/Ca_HVA.c Thread Safe Translating Ih.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/Ih.c Thread Safe Translating Im.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/Im.c Thread Safe Translating K_Pst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/K_Pst.c Thread Safe Translating K_Tst.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/K_Tst.c Thread Safe Translating NaTa_t.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/NaTa_t.c Thread Safe Translating Nap_Et2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/Nap_Et2.c Thread Safe Translating NaTs2_t.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/NaTs2_t.c Thread Safe Translating SK_E2.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/SK_E2.c Thread Safe Translating SKv3_1.mod into /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/examples/l5pc/x86_64/SKv3_1.c Thread Safe cd examples/l5pc && \ jupyter nbconvert --to python L5PC.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d;/neurom/d;/axes/d;/fig/d;/for index/d' L5PC.py >L5PC.tmp && \ mv L5PC.tmp L5PC.py && \ python3 l5pc_validate_neuron_arbor_pm.py --prepare-only --regions somatic --param-values ../../bluepyopt/tests/testdata/l5pc_validate_neuron_arbor/param_values.json && \ jupyter nbconvert --to python l5pc_validate_neuron_arbor_somatic.ipynb && \ sed '/get_ipython/d;/plt\./d;/import matplotlib/d;/from IPython.display/d;/multiprocessing/d;s/pool.map/map/g;s/# test_l5pc: insert //g;/# test_l5pc: skip/d' l5pc_validate_neuron_arbor_somatic.py >l5pc_validate_neuron_arbor_somatic.tmp && \ mv l5pc_validate_neuron_arbor_somatic.tmp l5pc_validate_neuron_arbor_somatic.py [NbConvertApp] Converting notebook L5PC.ipynb to python [NbConvertApp] Writing 9158 bytes to L5PC.py INFO:root:Outputting l5pc_validate_neuron_arbor notebook to ./l5pc_validate_neuron_arbor_somatic.ipynb with all local mechs/params... mechs = {'all': ['pas'], 'somatic': ['NaTs2_t', 'SKv3_1', 'SK_E2', 'CaDynamics_E2', 'Ca_HVA', 'Ca_LVAst', 'Ih']} extra_params = {'v_init': 'global', 'celsius': 'global', 'g_pas': ['all'], 'e_pas': ['all'], 'cm': ['all'], 'Ra': ['all'], 'ena': ['somatic'], 'ek': ['somatic']} INFO:papermill:Input Notebook: l5pc_validate_neuron_arbor.ipynb INFO:papermill:Output Notebook: ./l5pc_validate_neuron_arbor_somatic.ipynb [NbConvertApp] Converting notebook l5pc_validate_neuron_arbor_somatic.ipynb to python [NbConvertApp] Writing 24826 bytes to l5pc_validate_neuron_arbor_somatic.py cd examples/simplecell && \ jupyter nbconvert --to python simplecell.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' simplecell.py >simplecell.tmp && \ mv simplecell.tmp simplecell.py && \ jupyter nbconvert --to python simplecell_arbor.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' simplecell_arbor.py >simplecell_arbor.tmp && \ mv simplecell_arbor.tmp simplecell_arbor.py [NbConvertApp] Converting notebook simplecell.ipynb to python [NbConvertApp] Writing 10724 bytes to simplecell.py [NbConvertApp] Converting notebook simplecell_arbor.ipynb to python [NbConvertApp] Writing 10785 bytes to simplecell_arbor.py cd examples/metaparameters && \ jupyter nbconvert --to python metaparameters.ipynb && \ sed '/get_ipython/d;/plt\./d;/plot_responses/d;/import matplotlib/d' metaparameters.py >metaparameters.tmp && \ mv metaparameters.tmp metaparameters.py [NbConvertApp] Converting notebook metaparameters.ipynb to python [NbConvertApp] Writing 9314 bytes to metaparameters.py + k='not test_metaparameter' + k='not test_metaparameter and not test_NrnRampPulse_instantiate' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate' + k='not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate and not test_write_acc_expsyn' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest bluepyopt/tests/ -v -m 'unit and not neuroml' '-k not test_metaparameter and not test_NrnRampPulse_instantiate and not test_DEAPOptimisation_run and not test_DEAPOptimisation_run_from_parents and not test_optimisationsCMA_SO_run and not test_optimisationsCMA_MO_run and not test_LFPySquarePulse_instantiate and not test_write_acc_expsyn' ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e configfile: pytest.ini collecting ... collected 183 items / 20 deselected / 163 selected bluepyopt/tests/test_bluepyopt.py::test_import PASSED [ 0%] bluepyopt/tests/test_deapext/test_algorithms.py::test_eaAlphaMuPlusLambdaCheckpoint PASSED [ 1%] bluepyopt/tests/test_deapext/test_algorithms.py::test_eaAlphaMuPlusLambdaCheckpoint_with_checkpoint PASSED [ 1%] bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorExact PASSED [ 2%] bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorSampled PASSED [ 3%] bluepyopt/tests/test_deapext/test_optimisations.py::test_DEAPOptimisation_constructor PASSED [ 3%] bluepyopt/tests/test_deapext/test_optimisations.py::test_IBEADEAPOptimisation_constructor PASSED [ 4%] 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_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:424: in write_acc create_acc.write_acc(output_dir, self, param_values, bluepyopt/ephys/create_acc.py:878: in write_acc output = cell.create_acc( bluepyopt/ephys/models.py:398: in create_acc self.instantiate_morphology_3d(sim=sim) bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = simple_ax2[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError During handling of the above exception, another exception occurred: @pytest.mark.unit def test_cell_model_write_and_read_acc_replace_axon(): """ephys.create_acc: Test write_acc and read_acc w/ axon replacement""" cell = make_cell(replace_axon=True) param_values = {"gnabar_hh": 0.1, "gkbar_hh": 0.03} with tempfile.TemporaryDirectory() as acc_dir: try: nrn_sim = ephys.simulators.NrnSimulator() cell.write_acc(acc_dir, param_values, sim=nrn_sim) except Exception as e: # fail with an older Arbor version > assert isinstance(e, NotImplementedError) E AssertionError: assert False E + where False = isinstance(TypeError('Not an iterable HocObject'), NotImplementedError) bluepyopt/tests/test_ephys/test_create_acc.py:585: AssertionError ____________________________ test_write_acc_simple _____________________________ @pytest.mark.unit def test_write_acc_simple(): SIMPLECELL_PATH = str( ( pathlib.Path(__file__).parent / "../../../examples/simplecell" ).resolve() ) sys.path.insert(0, SIMPLECELL_PATH) ref_dir = (testdata_dir / "acc/simplecell").resolve() old_cwd = os.getcwd() try: os.chdir(SIMPLECELL_PATH) import simplecell_model param_values = { "gnabar_hh": 0.10299326453483033, "gkbar_hh": 0.027124836082684685, } cell = simplecell_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() > cell.instantiate_morphology_3d(nrn_sim) bluepyopt/tests/test_ephys/test_create_acc.py:691: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = simple_cell[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError _____________________________ test_write_acc_l5pc ______________________________ @pytest.mark.unit def test_write_acc_l5pc(): L5PC_PATH = str( (pathlib.Path(__file__).parent / "../../../examples/l5pc").resolve() ) sys.path.insert(0, L5PC_PATH) ref_dir = (testdata_dir / "acc/l5pc").resolve() old_cwd = os.getcwd() try: import l5pc_model param_values = { "gNaTs2_tbar_NaTs2_t.apical": 0.026145, "gSKv3_1bar_SKv3_1.apical": 0.004226, "gImbar_Im.apical": 0.000143, "gNaTa_tbar_NaTa_t.axonal": 3.137968, "gK_Tstbar_K_Tst.axonal": 0.089259, "gamma_CaDynamics_E2.axonal": 0.002910, "gNap_Et2bar_Nap_Et2.axonal": 0.006827, "gSK_E2bar_SK_E2.axonal": 0.007104, "gCa_HVAbar_Ca_HVA.axonal": 0.000990, "gK_Pstbar_K_Pst.axonal": 0.973538, "gSKv3_1bar_SKv3_1.axonal": 1.021945, "decay_CaDynamics_E2.axonal": 287.198731, "gCa_LVAstbar_Ca_LVAst.axonal": 0.008752, "gamma_CaDynamics_E2.somatic": 0.000609, "gSKv3_1bar_SKv3_1.somatic": 0.303472, "gSK_E2bar_SK_E2.somatic": 0.008407, "gCa_HVAbar_Ca_HVA.somatic": 0.000994, "gNaTs2_tbar_NaTs2_t.somatic": 0.983955, "decay_CaDynamics_E2.somatic": 210.485284, "gCa_LVAstbar_Ca_LVAst.somatic": 0.000333, } cell = l5pc_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() > cell.instantiate_morphology_3d(nrn_sim) bluepyopt/tests/test_ephys/test_create_acc.py:750: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:250: in instantiate_morphology_3d self.instantiate_morphology(sim=sim) bluepyopt/ephys/models.py:241: in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = l5pc[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError During handling of the above exception, another exception occurred: @pytest.mark.unit def test_write_acc_l5pc(): L5PC_PATH = str( (pathlib.Path(__file__).parent / "../../../examples/l5pc").resolve() ) sys.path.insert(0, L5PC_PATH) ref_dir = (testdata_dir / "acc/l5pc").resolve() old_cwd = os.getcwd() try: import l5pc_model param_values = { "gNaTs2_tbar_NaTs2_t.apical": 0.026145, "gSKv3_1bar_SKv3_1.apical": 0.004226, "gImbar_Im.apical": 0.000143, "gNaTa_tbar_NaTa_t.axonal": 3.137968, "gK_Tstbar_K_Tst.axonal": 0.089259, "gamma_CaDynamics_E2.axonal": 0.002910, "gNap_Et2bar_Nap_Et2.axonal": 0.006827, "gSK_E2bar_SK_E2.axonal": 0.007104, "gCa_HVAbar_Ca_HVA.axonal": 0.000990, "gK_Pstbar_K_Pst.axonal": 0.973538, "gSKv3_1bar_SKv3_1.axonal": 1.021945, "decay_CaDynamics_E2.axonal": 287.198731, "gCa_LVAstbar_Ca_LVAst.axonal": 0.008752, "gamma_CaDynamics_E2.somatic": 0.000609, "gSKv3_1bar_SKv3_1.somatic": 0.303472, "gSK_E2bar_SK_E2.somatic": 0.008407, "gCa_HVAbar_Ca_HVA.somatic": 0.000994, "gNaTs2_tbar_NaTs2_t.somatic": 0.983955, "decay_CaDynamics_E2.somatic": 210.485284, "gCa_LVAstbar_Ca_LVAst.somatic": 0.000333, } cell = l5pc_model.create(do_replace_axon=True) nrn_sim = ephys.simulators.NrnSimulator() cell.instantiate_morphology_3d(nrn_sim) with tempfile.TemporaryDirectory() as test_dir: cell.write_acc( test_dir, param_values, # ext_catalogues=ext_catalogues, create_mod_morph=True, ) check_acc_dir(test_dir, ref_dir) except Exception as e: # fail with an older Arbor version > assert isinstance(e, NotImplementedError) E AssertionError: assert False E + where False = isinstance(TypeError('Not an iterable HocObject'), NotImplementedError) bluepyopt/tests/test_ephys/test_create_acc.py:762: AssertionError _________________________ test_CellEvaluator_evaluate __________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 204, in _run_func cell_model.instantiate(sim=sim) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/models.py", line 256, in instantiate self.instantiate_morphology(sim) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/models.py", line 241, in instantiate_morphology self.morphology.instantiate(sim=sim, icell=self.icell) ~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/morphologies.py", line 158, in instantiate self.replace_axon(sim=sim, icell=icell) ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/morphologies.py", line 178, in replace_axon nsec = len([sec for sec in icell.axonal]) ^^^^^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_CellEvaluator_evaluate(): """ephys.evaluators: Test CellEvaluator evaluate""" sim = ephys.simulators.NrnSimulator() simple_morph = ephys.morphologies.NrnFileMorphology( simple_morphology_path, do_replace_axon=True) all_loc = ephys.locations.NrnSeclistLocation('all', 'all') cm = ephys.parameters.NrnRangeParameter( name='cm', param_name='cm', bounds=[.5, 1.5], locations=[all_loc]) cell_model = ephys.models.CellModel('CellModel', morph=simple_morph, mechs=[], params=[cm]) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.1, step_delay=100.0, step_duration=100, total_duration=200, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma]) mean = -65 efeature = ephys.efeatures.eFELFeature(name='test_eFELFeature', efel_feature_name='voltage_base', recording_names={'': 'soma.v'}, stim_start=100.0, stim_end=200.0, exp_mean=-65, exp_std=1) s_obj = ephys.objectives.SingletonObjective( 'singleton', feature=efeature) fitness_calc = ephys.objectivescalculators.ObjectivesCalculator( objectives=[s_obj]) evaluator = ephys.evaluators.CellEvaluator( cell_model=cell_model, param_names=['cm'], fitness_calculator=fitness_calc, fitness_protocols={'sweep': protocol}, sim=sim) > responses = protocol.run(cell_model, {'cm': 1.0}, sim=sim) bluepyopt/tests/test_ephys/test_evaluators.py:113: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _________________ TestNrnSeclistCompLocation.test_instantiate __________________ self = def test_instantiate(self): """ephys.locations.NrnSeclistCompLocation: test instantiate""" # Create a little test class with a soma and two dendritic sections class Cell(object): """Cell class""" pass cell = Cell() soma = self.sim.neuron.h.Section() dend1 = self.sim.neuron.h.Section(name="dend1") dend2 = self.sim.neuron.h.Section(name="dend2") cell.somatic = self.sim.neuron.h.SectionList() cell.somatic.append(soma) cell.basal = self.sim.neuron.h.SectionList() cell.basal.append(dend1) cell.basal.append(dend2) > soma_comp = self.loc.instantiate(sim=self.sim, icell=cell) bluepyopt/tests/test_ephys/test_locations.py:115: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fd6367d8ec0> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError ____________ TestNrnTrunkSomaDistanceCompLocation.test_instantiate _____________ self = def test_instantiate(self): """ephys.locations.NrnSomaDistanceCompLocation: test instantiate""" # Create a little test class with a soma and two dendritic sections class Cell(object): """Cell class""" pass cell = Cell() soma = self.sim.neuron.h.Section(name="soma[0]") cell.soma = [soma] cell.testdend = self.sim.neuron.h.SectionList() dend1 = self.sim.neuron.h.Section(name="dend[0]") dend2 = self.sim.neuron.h.Section(name="dend[1]") dend3 = self.sim.neuron.h.Section(name="dend[2]") dend4 = self.sim.neuron.h.Section(name="dend[3]") dend5 = self.sim.neuron.h.Section(name="dend[4]") cell.testdend.append(sec=dend1) cell.testdend.append(sec=dend2) cell.testdend.append(sec=dend3) cell.testdend.append(sec=dend4) cell.testdend.append(sec=dend5) x0 = self.sim.neuron.h.Vector([0] * 10) d = self.sim.neuron.h.Vector([1] * 10) x1 = self.sim.neuron.h.Vector(np.linspace(0, 100, 10)) self.sim.neuron.h.pt3dadd(x0, x1, x0, d, sec=dend1) x2 = self.sim.neuron.h.Vector(np.linspace(100, 200, 10)) self.sim.neuron.h.pt3dadd(x0, x2, x0, d, sec=dend2) x3 = self.sim.neuron.h.Vector(np.linspace(200, 300, 10)) self.sim.neuron.h.pt3dadd(x0, x3, x0, d, sec=dend3) x4 = self.sim.neuron.h.Vector(np.linspace(300, 400, 10)) self.sim.neuron.h.pt3dadd(x0, x4, x0, d, sec=dend4) x5 = self.sim.neuron.h.Vector(np.linspace(400, 500, 10)) self.sim.neuron.h.pt3dadd(x0, x5, x0, d, sec=dend5) dend1.connect(soma(0.5), 0.0) dend2.connect(dend1(1.0), 0.0) dend3.connect(dend1(1.0), 0.0) dend4.connect(dend3(1.0), 0.0) dend5.connect(dend4(1.0), 0.0) > comp = self.loc.instantiate(sim=self.sim, icell=cell) bluepyopt/tests/test_ephys/test_locations.py:325: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/locations.py:537: in instantiate self.set_sec_index(icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = icell = .Cell object at 0x7fd636011be0> def set_sec_index(self, icell=None): """Search for the point furthest away along given direction.""" points = np.array( [ [ section.x3d(section.n3d() - 1), section.y3d(section.n3d() - 1), section.z3d(section.n3d() - 1), ] > for section in getattr(icell, self.seclist_name) ] ) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:521: TypeError ___________________________ test_nrnmod_instantiate ____________________________ @pytest.mark.unit def test_nrnmod_instantiate(): """ephys.mechanisms: Testing insert mechanism""" test_mech = ephys.mechanisms.NrnMODMechanism( 'test.pas', suffix='pas', locations=[simplecell.somatic_loc]) assert str(test_mech) == "test.pas: pas at ['somatic']" > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:44: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError ___________________________ test_nrnmod_determinism ____________________________ @pytest.mark.unit def test_nrnmod_determinism(): """ephys.mechanisms: Testing determinism""" test_mech = ephys.mechanisms.NrnMODMechanism( 'pas', suffix='pas', deterministic=False, locations=[simplecell.somatic_loc]) > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:146: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError __________________________ test_pprocess_instantiate ___________________________ @pytest.mark.unit def test_pprocess_instantiate(): """ephys.mechanisms: Testing insert point process""" test_pprocess = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[simplecell.somacenter_loc]) assert ( str(test_pprocess) == "expsyn: ExpSyn at ['somatic[0](0.5)']") > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_mechanisms.py:171: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError _____________________ test_nrnfilemorphology_replace_axon ______________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon(): """ephys.morphologies: testing NrnFileMorphology replace_axon""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_replace') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:69: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_replace[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ___________________ test_nrnfilemorphology_replace_axon_ax1 ____________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon_ax1(): """ephys.morphologies: testing NrnFileMorphology replace_axon with ax1""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_ax1_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_ax1') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:93: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_ax1[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ___________________ test_nrnfilemorphology_replace_axon_ax2 ____________________ @pytest.mark.unit def test_nrnfilemorphology_replace_axon_ax2(): """ephys.morphologies: testing NrnFileMorphology replace_axon with ax2""" sim = ephys.simulators.NrnSimulator() morph = ephys.morphologies.NrnFileMorphology( simpleswc_ax2_morphpath, do_replace_axon=True) cell = ephys.models.CellModel(name='cell_ax2') icell = cell.create_empty_cell( cell.name, sim=sim, seclist_names=cell.seclist_names, secarray_names=cell.secarray_names) > morph.instantiate(sim=sim, icell=icell) bluepyopt/tests/test_ephys/test_morphologies.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/morphologies.py:158: in instantiate self.replace_axon(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ sim = icell = cell_ax2[0] @staticmethod def replace_axon(sim=None, icell=None): """Replace axon""" > nsec = len([sec for sec in icell.axonal]) E TypeError: Not an iterable HocObject bluepyopt/ephys/morphologies.py:178: TypeError ________________________ test_pprocessparam_instantiate ________________________ @pytest.mark.unit def test_pprocessparam_instantiate(): """ephys.parameters: Testing point process parameter""" simplecell = bluepyopt.ephys.examples.simplecell.SimpleCell() simple_cell = simplecell.cell_model simple_cell.freeze(simplecell.default_param_values) sim = simplecell.nrn_sim expsyn_mech = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[simplecell.somacenter_loc]) expsyn_loc = ephys.locations.NrnPointProcessLocation( 'expsyn_loc', pprocess_mech=expsyn_mech) expsyn_tau_param = ephys.parameters.NrnPointProcessParameter( name='expsyn_tau', param_name='tau', value=2, locations=[expsyn_loc]) simple_cell.mechanisms.append(expsyn_mech) simple_cell.params[expsyn_tau_param.name] = expsyn_tau_param > simple_cell.instantiate(sim=sim) bluepyopt/tests/test_ephys/test_parameters.py:42: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/models.py:260: in instantiate mechanism.instantiate(sim=sim, icell=self.icell) bluepyopt/ephys/mechanisms.py:101: in instantiate for isec in isec_list: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ .0 = > return (isection for isection in isectionlist) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:243: TypeError ____________________________ test_distloc_exception ____________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_distloc_exception(): """ephys.protocols: test if protocol raise dist loc exception""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) dend_loc = ephys.locations.NrnSomaDistanceCompLocation( name='dend_loc', soma_distance=800, seclist_name='apical') rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_dend = ephys.recordings.CompRecording( name='dend.v', location=dend_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[ rec_soma, rec_dend]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim) bluepyopt/tests/test_ephys/test_protocols.py:71: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException __________________________ test_sequenceprotocol_run ___________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sequenceprotocol_run(): """ephys.protocols: Test SequenceProtocol run""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) sweep_protocol = ephys.protocols.SweepProtocol( name='sweep_prot', stimuli=[stim], recordings=[rec_soma]) seq_protocol = ephys.protocols.SequenceProtocol( name='seq_prot', protocols=[sweep_protocol]) > responses = seq_protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim) bluepyopt/tests/test_ephys/test_protocols.py:221: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:89: in run response = protocol.run( bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException ______________________ test_sweepprotocol_run_unisolated _______________________ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) > self.instantiate(sim=sim, cell_model=cell_model) bluepyopt/ephys/protocols.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:314: in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) bluepyopt/ephys/stimuli.py:258: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fd635e10d70> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sweepprotocol_run_unisolated(): """ephys.protocols: Test SweepProtocol unisolated run""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() # icell = dummy_cell.instantiate(sim=nrn_sim) soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) unknown_loc = ephys.locations.NrnSomaDistanceCompLocation( name='unknown_loc', seclist_name='somatic', soma_distance=100) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_unknown = ephys.recordings.CompRecording( name='unknown.v', location=unknown_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma, rec_unknown]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=False) bluepyopt/tests/test_ephys/test_protocols.py:354: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:302: in run responses = self._run_func(cell_model=cell_model, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) self.instantiate(sim=sim, cell_model=cell_model) try: if isinstance(sim, LFPySimulator): sim.run( lfpy_cell=cell_model.lfpy_cell, lfpy_electrode=cell_model.lfpy_electrode, tstop=self.total_duration, cvode_active=self.cvode_active) else: sim.run( self.total_duration, cvode_active=self.cvode_active ) except (RuntimeError, simulators.NrnSimulatorException): logger.debug( 'SweepProtocol: Running of parameter set {%s} generated ' 'an exception, returning None in responses', str(param_values)) responses = {recording.name: None for recording in self.recordings} else: responses = { recording.name: recording.response for recording in self.recordings} self.destroy(sim=sim) cell_model.destroy(sim=sim) cell_model.unfreeze(param_values.keys()) return responses except BaseException as e: > raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol bluepyopt/ephys/protocols.py:239: SweepProtocolException _______________________ test_sweepprotocol_run_isolated ________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 206, in _run_func self.instantiate(sim=sim, cell_model=cell_model) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 314, in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/stimuli.py", line 258, in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/locations.py", line 98, in instantiate iseclist_size = len([x for x in iseclist]) ^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_sweepprotocol_run_isolated(): """ephys.protocols: Test SweepProtocol isolated run""" nrn_sim = ephys.simulators.NrnSimulator(dt=0.1) dummy_cell = dummycells.DummyCellModel1() soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) unknown_loc = ephys.locations.NrnSomaDistanceCompLocation( name='unknown_loc', seclist_name='somatic', soma_distance=100) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') rec_unknown = ephys.recordings.CompRecording( name='unknown.v', location=unknown_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma, rec_unknown]) > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=True) bluepyopt/tests/test_ephys/test_protocols.py:405: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _________________________ test_nrnsimulator_exception __________________________ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) > self.instantiate(sim=sim, cell_model=cell_model) bluepyopt/ephys/protocols.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:314: in instantiate stimulus.instantiate(sim=sim, icell=cell_model.icell) bluepyopt/ephys/stimuli.py:258: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fd636011fd0> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError The above exception was the direct cause of the following exception: @pytest.mark.unit def test_nrnsimulator_exception(): """ephys.protocols: test if protocol raise nrn sim exception""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() soma_loc = ephys.locations.NrnSeclistCompLocation( name='soma_loc', seclist_name='somatic', sec_index=0, comp_x=.5) rec_soma = ephys.recordings.CompRecording( name='soma.v', location=soma_loc, variable='v') stim = ephys.stimuli.NrnSquarePulse( step_amplitude=0.0, step_delay=0.0, step_duration=50, total_duration=50, location=soma_loc) protocol = ephys.protocols.SweepProtocol( name='prot', stimuli=[stim], recordings=[rec_soma]) nrn_sim.run = run_RuntimeError > responses = protocol.run( cell_model=dummy_cell, param_values={}, sim=nrn_sim, isolate=False) bluepyopt/tests/test_ephys/test_protocols.py:450: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:302: in run responses = self._run_func(cell_model=cell_model, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = cell_model = param_values = {} sim = def _run_func(self, cell_model, param_values, sim=None): """Run protocols""" try: cell_model.freeze(param_values) cell_model.instantiate(sim=sim) self.instantiate(sim=sim, cell_model=cell_model) try: if isinstance(sim, LFPySimulator): sim.run( lfpy_cell=cell_model.lfpy_cell, lfpy_electrode=cell_model.lfpy_electrode, tstop=self.total_duration, cvode_active=self.cvode_active) else: sim.run( self.total_duration, cvode_active=self.cvode_active ) except (RuntimeError, simulators.NrnSimulatorException): logger.debug( 'SweepProtocol: Running of parameter set {%s} generated ' 'an exception, returning None in responses', str(param_values)) responses = {recording.name: None for recording in self.recordings} else: responses = { recording.name: recording.response for recording in self.recordings} self.destroy(sim=sim) cell_model.destroy(sim=sim) cell_model.unfreeze(param_values.keys()) return responses except BaseException as e: > raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol bluepyopt/ephys/protocols.py:239: SweepProtocolException _______________________ test_nrnsimulator_cvode_minstep ________________________ pebble.common.types.RemoteTraceback: Traceback (most recent call last): File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 204, in _run_func cell_model.instantiate(sim=sim) ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/models.py", line 260, in instantiate mechanism.instantiate(sim=sim, icell=self.icell) ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/mechanisms.py", line 101, in instantiate for isec in isec_list: ^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/locations.py", line 243, in return (isection for isection in isectionlist) ^^^^^^^^^^^^ TypeError: Not an iterable HocObject The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/pebble/common/process.py", line 65, in process_execute return Result(ResultStatus.SUCCESS, function(*args, **kwargs)) ~~~~~~~~^^^^^^^^^^^^^^^^^ File "/builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/ephys/protocols.py", line 239, in _run_func raise SweepProtocolException( 'Failed to run Neuron Sweep Protocol') from e bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol The above exception was the direct cause of the following exception: @pytest.mark.unit def test_nrnsimulator_cvode_minstep(): """ephys.simulators: test if NrnSimulator constructor works""" # Check with minstep specified neuron_sim = ephys.simulators.NrnSimulator() assert neuron_sim.cvode.minstep() == 0.0 assert neuron_sim.cvode_minstep == 0.0 # Check default minstep before and after run neuron_sim = ephys.simulators.NrnSimulator(cvode_minstep=0.01) assert neuron_sim.cvode.minstep() == 0.0 neuron_sim.run(tstop=10) assert neuron_sim.cvode.minstep() == 0.0 # Check with that minstep is set back to the original value after run neuron_sim = ephys.simulators.NrnSimulator(cvode_minstep=0.0) neuron_sim.cvode_minstep = 0.05 assert neuron_sim.cvode.minstep() == 0.05 neuron_sim.run(tstop=10) assert neuron_sim.cvode.minstep() == 0.05 # Check that the minstep is effective cvode_minstep = 0.012 params = { "gnabar_hh": 0.10299326453483033, "gkbar_hh": 0.027124836082684685, } simplecell = examples.simplecell.SimpleCell() evaluator = simplecell.cell_evaluator evaluator.cell_model.unfreeze(params.keys()) evaluator.sim = ephys.simulators.NrnSimulator(cvode_minstep=cvode_minstep) > responses = evaluator.run_protocols( protocols=evaluator.fitness_protocols.values(), param_values=params ) bluepyopt/tests/test_ephys/test_simulators.py:92: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/evaluators.py:177: in run_protocols responses.update(self.run_protocol( bluepyopt/ephys/evaluators.py:155: in run_protocol return protocol.run( bluepyopt/ephys/protocols.py:189: in inner responses = func(self, cell_model, param_values, **kwargs) bluepyopt/ephys/protocols.py:294: in run responses = tasks.result() /usr/lib64/python3.13/concurrent/futures/_base.py:456: in result return self.__get_result() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = None def __get_result(self): if self._exception: try: > raise self._exception E bluepyopt.ephys.protocols.SweepProtocolException: Failed to run Neuron Sweep Protocol /usr/lib64/python3.13/concurrent/futures/_base.py:401: SweepProtocolException _____________________ test_NrnNetStimStimulus_instantiate ______________________ @pytest.mark.unit def test_NrnNetStimStimulus_instantiate(): """ephys.stimuli: test if NrnNetStimStimulus instantiate works""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() icell = dummy_cell.instantiate(sim=nrn_sim) somacenter_loc = ephys.locations.NrnSeclistCompLocation( name=None, seclist_name='somatic', sec_index=0, comp_x=.5) expsyn_mech = ephys.mechanisms.NrnMODPointProcessMechanism( name='expsyn', suffix='ExpSyn', locations=[somacenter_loc]) > expsyn_mech.instantiate(sim=nrn_sim, icell=icell) bluepyopt/tests/test_ephys/test_stimuli.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/mechanisms.py:308: in instantiate icomp = location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fd635e11400> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError ___________________ test_NrnCurrentPlayStimulus_instantiate ____________________ @pytest.mark.unit def test_NrnCurrentPlayStimulus_instantiate(): """ephys.stimuli: test if NrnNetStimStimulus instantiate works""" nrn_sim = ephys.simulators.NrnSimulator() dummy_cell = dummycells.DummyCellModel1() icell = dummy_cell.instantiate(sim=nrn_sim) somacenter_loc = ephys.locations.NrnSeclistCompLocation( name=None, seclist_name='somatic', sec_index=0, comp_x=.5) time_points = [10, 50] current_points = [0.1, 0.2] current_stim = ephys.stimuli.NrnCurrentPlayStimulus( time_points=time_points, current_points=current_points, location=somacenter_loc) assert current_stim.time_points == time_points assert current_stim.current_points == current_points assert str(current_stim) == 'Current play at somatic[0](0.5)' > current_stim.instantiate(sim=nrn_sim, icell=icell) bluepyopt/tests/test_ephys/test_stimuli.py:120: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ bluepyopt/ephys/stimuli.py:88: in instantiate icomp = self.location.instantiate(sim=sim, icell=icell) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = sim = icell = .Cell object at 0x7fd636011fd0> def instantiate(self, sim=None, icell=None): # pylint: disable=W0613 """Find the instantiate compartment""" iseclist = getattr(icell, self.seclist_name) > iseclist_size = len([x for x in iseclist]) E TypeError: Not an iterable HocObject bluepyopt/ephys/locations.py:98: TypeError =============================== warnings summary =============================== bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorExact /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/deapext/hype.py:71: RuntimeWarning: divide by zero encountered in divide alpha.append(numpy.prod((k - j) / (Ps - j) / i)) bluepyopt/tests/test_deapext/test_hype.py::test_hypeIndicatorSampled /builddir/build/BUILD/python-bluepyopt-1.14.11-build/BluePyOpt-43d63a88c0c9fc5b33cd69d6c5ce0db77f6dea1e/bluepyopt/deapext/hype.py:101: RuntimeWarning: divide by zero encountered in divide alpha.append(numpy.prod((k - j) / (nrP - j) / i)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_cell_model_write_and_read_acc_replace_axon FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_write_acc_simple FAILED bluepyopt/tests/test_ephys/test_create_acc.py::test_write_acc_l5pc - A... FAILED bluepyopt/tests/test_ephys/test_evaluators.py::test_CellEvaluator_evaluate FAILED bluepyopt/tests/test_ephys/test_locations.py::TestNrnSeclistCompLocation::test_instantiate FAILED bluepyopt/tests/test_ephys/test_locations.py::TestNrnTrunkSomaDistanceCompLocation::test_instantiate FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_nrnmod_instantiate FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_nrnmod_determinism FAILED bluepyopt/tests/test_ephys/test_mechanisms.py::test_pprocess_instantiate FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon_ax1 FAILED bluepyopt/tests/test_ephys/test_morphologies.py::test_nrnfilemorphology_replace_axon_ax2 FAILED bluepyopt/tests/test_ephys/test_parameters.py::test_pprocessparam_instantiate FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_distloc_exception FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sequenceprotocol_run FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sweepprotocol_run_unisolated FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_sweepprotocol_run_isolated FAILED bluepyopt/tests/test_ephys/test_protocols.py::test_nrnsimulator_exception FAILED bluepyopt/tests/test_ephys/test_simulators.py::test_nrnsimulator_cvode_minstep FAILED bluepyopt/tests/test_ephys/test_stimuli.py::test_NrnNetStimStimulus_instantiate FAILED bluepyopt/tests/test_ephys/test_stimuli.py::test_NrnCurrentPlayStimulus_instantiate ========== 21 failed, 142 passed, 20 deselected, 2 warnings in 7.86s =========== RPM build errors: error: Bad exit status from /var/tmp/rpm-tmp.MxPaMI (%check) Bad exit status from /var/tmp/rpm-tmp.MxPaMI (%check) Finish: rpmbuild python-bluepyopt-1.14.11-3.fc42.src.rpm Finish: build phase for python-bluepyopt-1.14.11-3.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1736251236.857749/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-bluepyopt-1.14.11-3.fc42.src.rpm) Config(fedora-rawhide-x86_64) 0 minutes 57 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 0f68f12690404bafa0113eb4d878a9a3 -D /var/lib/mock/fedora-rawhide-x86_64-1736251236.857749/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.56hycqiw:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target x86_64 /builddir/build/originals/python-bluepyopt.spec' Copr build error: Build failed