Warning: Permanently added '13.121.86.224' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8477094-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 1.2 PID: 39859 Logging PID: 39860 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8477094, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ffdcbe2c642dd6ee4d3d3c521d469d593f4669c1', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed/python-neatdend', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-neatdend', 'package_version': '0.9.2-19', 'project_dirname': 'gcc-15-smoketest-3.failed', 'project_name': 'gcc-15-smoketest-3.failed', 'project_owner': 'dmalcolm', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3.failed/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch', 'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch', 'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}], 'sandbox': 'dmalcolm/gcc-15-smoketest-3.failed--dmalcolm', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'dmalcolm', 'tags': [], 'task_id': '8477094-fedora-rawhide-s390x', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed/python-neatdend /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3.failed/python-neatdend', '/var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend'... Running: git checkout ffdcbe2c642dd6ee4d3d3c521d469d593f4669c1 -- cmd: ['git', 'checkout', 'ffdcbe2c642dd6ee4d3d3c521d469d593f4669c1', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend rc: 0 stdout: stderr: Note: switching to 'ffdcbe2c642dd6ee4d3d3c521d469d593f4669c1'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ffdcbe2 automatic import of python-neatdend Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading python-neatdend-0.9.2.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o python-neatdend-0.9.2.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3.failed/python-neatdend/python-neatdend-0.9.2.tar.gz/md5/4afcae52ad6827841b9ee89218b4303a/python-neatdend-0.9.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2381k 100 2381k 0 0 2392k 0 --:--:-- --:--:-- --:--:-- 2391k INFO: Reading stdout from command: md5sum python-neatdend-0.9.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend/python-neatdend.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736281610.623727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend/python-neatdend.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736281610.623727 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend/python-neatdend.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736281610.623727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-698a3074-94b4-445b-bb9c-8502b8e913d4 INFO: Checking that 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 image matches host's architecture INFO: Copy content of container 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736281610.623727/root INFO: mounting 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 with podman image mount INFO: image 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 as /var/lib/containers/storage/overlay/94ca247095614150848e67cea26d68d782195861139b4b21050cc50c991028f8/merged INFO: umounting image 9d51fc14eabf1f09e05b6d1fa310b363473951efb08a7c2d51486e9e0aeaa872 (/var/lib/containers/storage/overlay/94ca247095614150848e67cea26d68d782195861139b4b21050cc50c991028f8/merged) with podman image umount INFO: Removing image mock-bootstrap-698a3074-94b4-445b-bb9c-8502b8e913d4 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1736281610.623727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.s390x rpm-sequoia-1.7.0-3.fc42.s390x dnf5-5.2.8.1-2.fc42.s390x dnf5-plugins-5.2.8.1-2.fc42.s390x Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 5.8 KiB/s | 3.2 KiB | 00m01s Copr repository 100% | 2.6 KiB/s | 1.5 KiB | 00m01s Additional repo https_fedorapeople_org 100% | 4.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 2.2 MiB/s | 393.6 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash s390x 5.2.37-1.fc42 fedora 8.4 MiB bzip2 s390x 1.0.8-19.fc41 fedora 99.2 KiB coreutils s390x 9.5-11.fc42 copr_base 5.4 MiB cpio s390x 2.15-2.fc41 fedora 1.1 MiB diffutils s390x 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.12 fedora 19.8 KiB findutils s390x 1:4.10.0-4.fc41 fedora 1.9 MiB gawk s390x 5.3.0-4.fc41 fedora 1.8 MiB glibc-minimal-langpack s390x 2.40.9000-26.fc42 fedora 0.0 B grep s390x 3.11-9.fc41 fedora 1.0 MiB gzip s390x 1.13-2.fc41 fedora 400.8 KiB info s390x 7.1.1-2.fc42 fedora 409.1 KiB patch s390x 2.7.6-25.fc41 fedora 298.3 KiB redhat-rpm-config noarch 300-1.no_annobin.0.fc42 copr_base 186.6 KiB rpm-build s390x 4.20.0-1.fc42 fedora 200.4 KiB sed s390x 4.9-3.fc41 fedora 873.2 KiB shadow-utils s390x 2:4.17.0-2.fc42 fedora 4.0 MiB tar s390x 2:1.35-4.fc41 fedora 3.0 MiB unzip s390x 6.0-65.fc42 fedora 2.2 MiB util-linux s390x 2.40.2-8.fc42 fedora 3.7 MiB which s390x 2.21-42.fc41 fedora 83.9 KiB xz s390x 1:5.6.3-2.fc42 fedora 1.2 MiB Installing dependencies: add-determinism s390x 0.5.0-1.fc42 fedora 3.3 MiB alternatives s390x 1.31-1.fc42 fedora 60.6 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs s390x 4.0.2-1.fc41 fedora 350.9 KiB authselect s390x 1.5.0-8.fc42 fedora 157.3 KiB authselect-libs s390x 1.5.0-8.fc42 fedora 823.5 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils s390x 2.43.50-9.fc42 fedora 27.4 MiB build-reproducibility-srpm-macros noarch 0.5.0-1.fc42 fedora 735.0 B bzip2-libs s390x 1.0.8-19.fc41 fedora 88.5 KiB ca-certificates noarch 2024.2.69_v8.0.401-4.fc42 fedora 2.6 MiB coreutils-common s390x 9.5-11.fc42 copr_base 11.2 MiB cracklib s390x 2.9.11-6.fc41 fedora 250.0 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl s390x 8.11.1-2.fc42 fedora 475.8 KiB cyrus-sasl-lib s390x 2.1.28-27.fc41 fedora 2.4 MiB debugedit s390x 5.1-2.fc42 fedora 195.8 KiB dwz s390x 0.15-8.fc42 fedora 318.6 KiB ed s390x 1.20.2-2.fc41 fedora 150.6 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils s390x 0.192-7.fc42 fedora 2.9 MiB elfutils-debuginfod-client s390x 0.192-7.fc42 fedora 73.0 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 fedora 1.8 KiB elfutils-libelf s390x 0.192-7.fc42 fedora 1.2 MiB elfutils-libs s390x 0.192-7.fc42 fedora 746.5 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.12 fedora 0.0 B fedora-release-identity-basic noarch 42-0.12 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file s390x 5.45-8.fc42 fedora 99.3 KiB file-libs s390x 5.45-8.fc42 fedora 9.9 MiB filesystem s390x 3.18-29.fc42 fedora 106.0 B filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal s390x 15.2-4.fc42 fedora 14.7 MiB gdbm s390x 1:1.23-7.fc41 fedora 483.9 KiB gdbm-libs s390x 1:1.23-7.fc41 fedora 133.4 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc s390x 2.40.9000-26.fc42 fedora 5.1 MiB glibc-common s390x 2.40.9000-26.fc42 fedora 1.1 MiB glibc-gconv-extra s390x 2.40.9000-26.fc42 fedora 6.5 MiB gmp s390x 1:6.3.0-2.fc41 fedora 770.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson s390x 2.14-1.fc42 fedora 92.9 KiB json-c s390x 0.18-1.fc42 fedora 82.9 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs s390x 1.6.3-4.fc41 fedora 54.2 KiB krb5-libs s390x 1.21.3-3.fc42 fedora 2.4 MiB libacl s390x 2.3.2-2.fc41 fedora 43.8 KiB libarchive s390x 3.7.7-1.fc42 fedora 1.0 MiB libattr s390x 2.5.2-4.fc41 fedora 28.3 KiB libblkid s390x 2.40.2-8.fc42 fedora 286.4 KiB libbrotli s390x 1.1.0-5.fc41 fedora 925.1 KiB libcap s390x 2.71-1.fc42 fedora 211.8 KiB libcap-ng s390x 0.8.5-3.fc41 fedora 76.7 KiB libcom_err s390x 1.47.2-1.fc42 fedora 57.7 KiB libcurl s390x 8.11.1-2.fc42 fedora 861.0 KiB libeconf s390x 0.7.5-1.fc42 fedora 62.5 KiB libevent s390x 2.1.12-14.fc41 fedora 938.8 KiB libfdisk s390x 2.40.2-8.fc42 fedora 394.8 KiB libffi s390x 3.4.6-3.fc42 fedora 65.9 KiB libgcc s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 166.7 KiB libgomp s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 529.0 KiB libidn2 s390x 2.3.7-2.fc41 fedora 328.9 KiB libmount s390x 2.40.2-8.fc42 fedora 375.8 KiB libnghttp2 s390x 1.64.0-1.fc42 fedora 177.9 KiB libpkgconf s390x 2.3.0-1.fc42 fedora 85.9 KiB libpsl s390x 0.21.5-4.fc41 fedora 80.3 KiB libpwquality s390x 1.4.5-11.fc41 fedora 420.9 KiB libselinux s390x 3.8-0.rc3.1.fc42 fedora 203.4 KiB libsemanage s390x 3.8-0.rc3.1.fc42 fedora 305.1 KiB libsepol s390x 3.8-0.rc3.1.fc42 fedora 840.1 KiB libsmartcols s390x 2.40.2-8.fc42 fedora 192.2 KiB libssh s390x 0.11.1-1.fc42 fedora 585.3 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 3.1 MiB libtasn1 s390x 4.19.0-9.fc41 fedora 187.5 KiB libtirpc s390x 1.3.6-1.rc3.fc42 fedora 205.3 KiB libtool-ltdl s390x 2.5.4-1.fc42 copr_base 67.9 KiB libunistring s390x 1.1-8.fc41 fedora 1.8 MiB libuuid s390x 2.40.2-8.fc42 fedora 41.2 KiB libverto s390x 0.3.2-9.fc41 fedora 29.3 KiB libxcrypt s390x 4.4.37-4.fc42 fedora 269.4 KiB libxml2 s390x 2.12.9-1.fc42 fedora 1.8 MiB libzstd s390x 1.5.6-2.fc41 fedora 875.7 KiB lua-libs s390x 5.4.7-1.fc42 fedora 328.8 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs s390x 1.10.0-1.fc41 fedora 201.3 KiB mpfr s390x 4.2.1-5.fc41 fedora 698.7 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs s390x 6.5-2.20240629.fc41 fedora 1.1 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap s390x 2.6.8-6.fc42 fedora 654.5 KiB openssl-libs s390x 1:3.2.2-10.fc42 fedora 6.0 MiB p11-kit s390x 0.25.5-4.fc42 fedora 2.5 MiB p11-kit-trust s390x 0.25.5-4.fc42 fedora 479.2 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam s390x 1.7.0-3.fc42 fedora 1.5 MiB pam-libs s390x 1.7.0-3.fc42 fedora 122.5 KiB pcre2 s390x 10.44-1.fc41.1 fedora 684.9 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf s390x 2.3.0-1.fc42 fedora 92.4 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config s390x 2.3.0-1.fc42 fedora 988.0 B popt s390x 1.19-7.fc41 fedora 144.7 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 fedora 456.0 B readline s390x 8.2-11.fc42 fedora 556.8 KiB rpm s390x 4.20.0-1.fc42 fedora 3.1 MiB rpm-build-libs s390x 4.20.0-1.fc42 fedora 218.4 KiB rpm-libs s390x 4.20.0-1.fc42 fedora 813.6 KiB rpm-sequoia s390x 1.7.0-3.fc42 fedora 3.2 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-9.fc42 fedora 720.7 KiB sqlite-libs s390x 3.47.2-1.fc42 fedora 1.6 MiB systemd-libs s390x 257.1-1.fc42 fedora 2.2 MiB util-linux-core s390x 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs s390x 0.8.3-1.fc42 fedora 64.3 KiB xz-libs s390x 1:5.6.3-2.fc42 fedora 226.1 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip s390x 3.0-42.fc42 fedora 723.1 KiB zlib-ng-compat s390x 2.2.2-1.fc42 fedora 109.4 KiB zstd s390x 1.5.6-2.fc41 fedora 1.8 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 0 B. After this operation, 183 MiB extra will be used (install 183 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] bzip2-0:1.0.8-19.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] rpm-build-0:4.20.0-1.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] unzip-0:6.0-65.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] cpio-0:2.15-2.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/154] libtool-ltdl-0:2.5.4-1.fc42.s 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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[100/156] Installing elfutils-default-y 100% | 510.7 KiB/s | 2.0 KiB | 00m00s [101/156] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.4 KiB | 00m00s [102/156] Installing cpio-0:2.15-2.fc41 100% | 223.8 MiB/s | 1.1 MiB | 00m00s [103/156] Installing diffutils-0:3.10-8 100% | 271.4 MiB/s | 1.6 MiB | 00m00s [104/156] Installing jansson-0:2.14-1.f 100% | 92.1 MiB/s | 94.3 KiB | 00m00s [105/156] Installing json-c-0:0.18-1.fc 100% | 0.0 B/s | 84.1 KiB | 00m00s [106/156] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 87.0 KiB | 00m00s [107/156] Installing pkgconf-0:2.3.0-1. 100% | 92.7 MiB/s | 94.9 KiB | 00m00s [108/156] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.6 KiB | 00m00s [109/156] Installing libverto-0:0.3.2-9 100% | 30.3 MiB/s | 31.1 KiB | 00m00s [110/156] Installing krb5-libs-0:1.21.3 100% | 241.7 MiB/s | 2.4 MiB | 00m00s [111/156] Installing libtirpc-0:1.3.6-1 100% | 101.1 MiB/s | 207.1 KiB | 00m00s [112/156] Installing pam-0:1.7.0-3.fc42 100% | 132.8 MiB/s | 1.6 MiB | 00m00s [113/156] Installing libssh-0:0.11.1-1. 100% | 286.8 MiB/s | 587.4 KiB | 00m00s [114/156] Installing libgomp-0:15.0.0-0 100% | 259.0 MiB/s | 530.4 KiB | 00m00s [115/156] Installing rpm-build-libs-0:4 100% | 214.1 MiB/s | 219.3 KiB | 00m00s [116/156] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 65.7 KiB | 00m00s [117/156] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB | 00m00s [118/156] Installing libnghttp2-0:1.64. 100% | 174.9 MiB/s | 179.1 KiB | 00m00s [119/156] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 69.0 KiB | 00m00s [120/156] Installing openldap-0:2.6.8-6 100% | 214.3 MiB/s | 658.3 KiB | 00m00s [121/156] Installing libcurl-0:8.11.1-2 100% | 210.5 MiB/s | 862.1 KiB | 00m00s [122/156] Installing elfutils-debuginfo 100% | 73.5 MiB/s | 75.3 KiB | 00m00s [123/156] Installing binutils-0:2.43.50 100% | 338.4 MiB/s | 27.4 MiB | 00m00s [124/156] Installing elfutils-0:0.192-7 100% | 293.0 MiB/s | 2.9 MiB | 00m00s [125/156] Installing gdb-minimal-0:15.2 100% | 312.9 MiB/s | 14.7 MiB | 00m00s [126/156] Installing debugedit-0:5.1-2. 100% | 193.9 MiB/s | 198.5 KiB | 00m00s [127/156] Installing curl-0:8.11.1-2.fc 100% | 58.4 MiB/s | 478.3 KiB | 00m00s [128/156] Installing rpm-0:4.20.0-1.fc4 100% | 167.0 MiB/s | 2.5 MiB | 00m00s [129/156] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [130/156] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [131/156] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [132/156] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [133/156] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [134/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [135/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [136/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [137/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [138/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [139/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [140/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [141/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [142/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [143/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [144/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [145/156] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 94.3 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 102.0 MiB/s | 209.0 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 169.5 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 78.9 MiB/s | 161.7 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 84.1 MiB/s | 86.1 KiB | 00m00s [156/156] Installing info-0:7.1.1-2.fc4 100% | 242.6 KiB/s | 409.5 KiB | 00m02s Warning: skipped OpenPGP checks for 7 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-1.fc42.s390x alternatives-1.31-1.fc42.s390x ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.s390x authselect-1.5.0-8.fc42.s390x authselect-libs-1.5.0-8.fc42.s390x basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.s390x binutils-2.43.50-9.fc42.s390x build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch bzip2-1.0.8-19.fc41.s390x bzip2-libs-1.0.8-19.fc41.s390x ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch coreutils-9.5-11.fc42.s390x coreutils-common-9.5-11.fc42.s390x cpio-2.15-2.fc41.s390x cracklib-2.9.11-6.fc41.s390x crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.s390x cyrus-sasl-lib-2.1.28-27.fc41.s390x debugedit-5.1-2.fc42.s390x diffutils-3.10-8.fc41.s390x dwz-0.15-8.fc42.s390x ed-1.20.2-2.fc41.s390x efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.s390x elfutils-debuginfod-client-0.192-7.fc42.s390x elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.s390x elfutils-libs-0.192-7.fc42.s390x fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.12.noarch fedora-release-common-42-0.12.noarch fedora-release-identity-basic-42-0.12.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.s390x file-libs-5.45-8.fc42.s390x filesystem-3.18-29.fc42.s390x filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc41.s390x fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.s390x gdb-minimal-15.2-4.fc42.s390x gdbm-1.23-7.fc41.s390x gdbm-libs-1.23-7.fc41.s390x ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-26.fc42.s390x glibc-common-2.40.9000-26.fc42.s390x glibc-gconv-extra-2.40.9000-26.fc42.s390x glibc-minimal-langpack-2.40.9000-26.fc42.s390x gmp-6.3.0-2.fc41.s390x gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.s390x gzip-1.13-2.fc41.s390x info-7.1.1-2.fc42.s390x jansson-2.14-1.fc42.s390x json-c-0.18-1.fc42.s390x kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.s390x krb5-libs-1.21.3-3.fc42.s390x libacl-2.3.2-2.fc41.s390x libarchive-3.7.7-1.fc42.s390x libattr-2.5.2-4.fc41.s390x libblkid-2.40.2-8.fc42.s390x libbrotli-1.1.0-5.fc41.s390x libcap-2.71-1.fc42.s390x libcap-ng-0.8.5-3.fc41.s390x libcom_err-1.47.2-1.fc42.s390x libcurl-8.11.1-2.fc42.s390x libeconf-0.7.5-1.fc42.s390x libevent-2.1.12-14.fc41.s390x libfdisk-2.40.2-8.fc42.s390x libffi-3.4.6-3.fc42.s390x libgcc-15.0.0-0.2.fc42.s390x libgomp-15.0.0-0.2.fc42.s390x libidn2-2.3.7-2.fc41.s390x libmount-2.40.2-8.fc42.s390x libnghttp2-1.64.0-1.fc42.s390x libpkgconf-2.3.0-1.fc42.s390x libpsl-0.21.5-4.fc41.s390x libpwquality-1.4.5-11.fc41.s390x libselinux-3.8-0.rc3.1.fc42.s390x libsemanage-3.8-0.rc3.1.fc42.s390x libsepol-3.8-0.rc3.1.fc42.s390x libsmartcols-2.40.2-8.fc42.s390x libssh-0.11.1-1.fc42.s390x libssh-config-0.11.1-1.fc42.noarch libstdc++-15.0.0-0.2.fc42.s390x libtasn1-4.19.0-9.fc41.s390x libtirpc-1.3.6-1.rc3.fc42.s390x libtool-ltdl-2.5.4-1.fc42.s390x libunistring-1.1-8.fc41.s390x libuuid-2.40.2-8.fc42.s390x libverto-0.3.2-9.fc41.s390x libxcrypt-4.4.37-4.fc42.s390x libxml2-2.12.9-1.fc42.s390x libzstd-1.5.6-2.fc41.s390x lua-libs-5.4.7-1.fc42.s390x lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.s390x mpfr-4.2.1-5.fc41.s390x ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.s390x ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.s390x openssl-libs-3.2.2-10.fc42.s390x p11-kit-0.25.5-4.fc42.s390x p11-kit-trust-0.25.5-4.fc42.s390x package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.s390x pam-libs-1.7.0-3.fc42.s390x patch-2.7.6-25.fc41.s390x pcre2-10.44-1.fc41.1.s390x pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.s390x pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.s390x popt-1.19-7.fc41.s390x publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.s390x redhat-rpm-config-300-1.no_annobin.0.fc42.noarch rpm-4.20.0-1.fc42.s390x rpm-build-4.20.0-1.fc42.s390x rpm-build-libs-4.20.0-1.fc42.s390x rpm-libs-4.20.0-1.fc42.s390x rpm-sequoia-1.7.0-3.fc42.s390x rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.s390x setup-2.15.0-9.fc42.noarch shadow-utils-4.17.0-2.fc42.s390x sqlite-libs-3.47.2-1.fc42.s390x systemd-libs-257.1-1.fc42.s390x tar-1.35-4.fc41.s390x unzip-6.0-65.fc42.s390x util-linux-2.40.2-8.fc42.s390x util-linux-core-2.40.2-8.fc42.s390x which-2.21-42.fc41.s390x xxhash-libs-0.8.3-1.fc42.s390x xz-5.6.3-2.fc42.s390x xz-libs-5.6.3-2.fc42.s390x zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.s390x zlib-ng-compat-2.2.2-1.fc42.s390x zstd-1.5.6-2.fc41.s390x Start: buildsrpm Start: rpmbuild -bs Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-19.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1736281610.623727/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-291bia7u/python-neatdend/python-neatdend.spec) Config(child) 0 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-neatdend-0.9.2-19.fc42.src.rpm) Config(fedora-rawhide-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736281610.623727/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1736281610.623727/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1736281610.623727/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.s390x rpm-sequoia-1.7.0-3.fc42.s390x dnf5-5.2.8.1-2.fc42.s390x dnf5-plugins-5.2.8.1-2.fc42.s390x Finish: chroot init Start: build phase for python-neatdend-0.9.2-19.fc42.src.rpm Start: build setup for python-neatdend-0.9.2-19.fc42.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-19.fc42.src.rpm Updating and loading repositories: Additional repo https_fedorapeople_org 100% | 4.8 KiB/s | 1.5 KiB | 00m00s fedora 100% | 10.1 KiB/s | 3.2 KiB | 00m00s Copr repository 100% | 13.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 79.2 MiB gcc-c++ s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 29.9 MiB git-core s390x 2.47.1-1.fc42 fedora 23.5 MiB neuron-devel s390x 8.2.2-11.fc41 fedora 506.9 KiB python3-devel s390x 3.13.1-2.fc42 fedora 1.8 MiB python3-neuron s390x 8.2.2-11.fc41 fedora 4.7 MiB python3-pytest noarch 8.3.4-1.fc42 fedora 20.8 MiB Installing dependencies: annobin-docs noarch 12.80-1.fc42 fedora 98.6 KiB annobin-plugin-gcc s390x 12.80-1.fc42 fedora 988.6 KiB autoconf noarch 2.72-3.fc41 fedora 2.8 MiB automake noarch 1.17-1.fc42 fedora 1.8 MiB cmake-filesystem s390x 3.31.3-1.fc42 fedora 0.0 B cpp s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 26.6 MiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat s390x 2.6.4-1.fc42 fedora 308.9 KiB gcc-plugin-annobin s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 51.3 KiB glibc-devel s390x 2.40.9000-26.fc42 fedora 2.6 MiB groff-base s390x 1.23.0-7.fc41 fedora 4.3 MiB iv s390x 0.1-0.10.20200818git14890c4.fc41 fedora 4.2 MiB iv-devel s390x 0.1-0.10.20200818git14890c4.fc41 fedora 1.1 MiB kernel-headers s390x 6.13.0-0.rc6.48.fc42 fedora 6.5 MiB less s390x 668-1.fc42 fedora 457.6 KiB libICE s390x 1.1.2-1.fc42 fedora 199.8 KiB libSM s390x 1.2.5-1.fc42 fedora 103.4 KiB libX11 s390x 1.8.10-2.fc42 fedora 1.4 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libX11-devel s390x 1.8.10-2.fc42 fedora 1.0 MiB libX11-xcb s390x 1.8.10-2.fc42 fedora 14.8 KiB libXau s390x 1.0.12-1.fc42 fedora 67.6 KiB libXau-devel s390x 1.0.12-1.fc42 fedora 7.5 KiB libXext s390x 1.3.6-2.fc41 fedora 97.7 KiB libXext-devel s390x 1.3.6-2.fc41 fedora 98.9 KiB libXt s390x 1.3.1-1.fc42 fedora 472.2 KiB libasan s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 1.6 MiB libatomic s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 26.0 KiB libb2 s390x 0.98.1-12.fc41 fedora 42.0 KiB libcbor s390x 0.11.0-2.fc41 fedora 81.7 KiB libedit s390x 3.1-54.20250104cvs.fc42 fedora 267.1 KiB libfido2 s390x 1.15.0-2.fc41 fedora 238.2 KiB libmpc s390x 1.3.1-6.fc41 fedora 164.5 KiB libstdc++-devel s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 15.4 MiB libtool s390x 2.5.4-1.fc42 copr_base 2.7 MiB libubsan s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 480.5 KiB libxcb s390x 1.17.0-3.fc42 fedora 1.2 MiB libxcb-devel s390x 1.17.0-3.fc42 fedora 2.7 MiB libxcrypt-devel s390x 4.4.37-4.fc42 fedora 30.5 KiB m4 s390x 1.4.19-10.fc41 fedora 628.5 KiB make s390x 1:4.4.1-9.fc42 fedora 1.9 MiB mpdecimal s390x 2.5.1-16.fc41 fedora 224.7 KiB ncurses s390x 6.5-2.20240629.fc41 fedora 641.5 KiB ncurses-c++-libs s390x 6.5-2.20240629.fc41 fedora 161.1 KiB ncurses-devel s390x 6.5-2.20240629.fc41 fedora 870.1 KiB neuron s390x 8.2.2-11.fc41 fedora 5.6 MiB openssh s390x 9.9p1-5.fc42 fedora 1.4 MiB openssh-clients s390x 9.9p1-5.fc42 fedora 2.8 MiB perl-AutoLoader noarch 5.74-512.fc42 fedora 20.5 KiB perl-B s390x 1.89-512.fc42 fedora 517.7 KiB perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB perl-Class-Struct noarch 0.68-512.fc42 fedora 25.4 KiB perl-Data-Dumper s390x 2.189-512.fc41 fedora 115.5 KiB perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB perl-Digest-MD5 s390x 2.59-5.fc41 fedora 59.6 KiB perl-DynaLoader s390x 1.56-512.fc42 fedora 32.1 KiB perl-Encode s390x 4:3.21-511.fc41 fedora 9.6 MiB perl-Errno s390x 1.38-512.fc42 fedora 8.4 KiB perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB perl-Fcntl s390x 1.18-512.fc42 fedora 56.8 KiB perl-File-Basename noarch 2.86-512.fc42 fedora 14.0 KiB perl-File-Compare noarch 1.100.800-512.fc42 fedora 5.6 KiB perl-File-Copy noarch 2.41-512.fc42 fedora 19.6 KiB perl-File-Find noarch 1.44-512.fc42 fedora 41.9 KiB perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB perl-File-stat noarch 1.14-512.fc42 fedora 12.5 KiB perl-FileHandle noarch 2.05-512.fc42 fedora 9.3 KiB perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-512.fc42 fedora 11.2 KiB perl-HTTP-Tiny noarch 0.090-1.fc42 fedora 154.4 KiB perl-IO s390x 1.55-512.fc42 fedora 150.9 KiB perl-IO-Socket-IP noarch 0.43-1.fc42 fedora 100.3 KiB perl-IO-Socket-SSL noarch 2.089-1.fc42 fedora 703.3 KiB perl-IPC-Open3 noarch 1.22-512.fc42 fedora 22.5 KiB perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB perl-MIME-Base64 s390x 3.16-511.fc41 fedora 45.9 KiB perl-Net-SSLeay s390x 1.94-7.fc41 fedora 1.4 MiB perl-POSIX s390x 2.20-512.fc42 fedora 250.9 KiB perl-PathTools s390x 3.91-511.fc41 fedora 179.8 KiB perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB perl-Scalar-List-Utils s390x 5:1.68-1.fc42 fedora 152.6 KiB perl-SelectSaver noarch 1.02-512.fc42 fedora 2.2 KiB perl-Socket s390x 4:2.038-511.fc41 fedora 127.8 KiB perl-Storable s390x 1:3.32-511.fc41 fedora 232.2 KiB perl-Symbol noarch 1.09-512.fc42 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Thread-Queue noarch 3.14-511.fc41 fedora 28.9 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-URI noarch 5.31-1.fc42 fedora 257.0 KiB perl-base noarch 2.27-512.fc42 fedora 12.5 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-512.fc42 fedora 5.8 KiB perl-interpreter s390x 4:5.40.0-512.fc42 fedora 122.1 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs s390x 4:5.40.0-512.fc42 fedora 10.2 MiB perl-locale noarch 1.12-512.fc42 fedora 6.5 KiB perl-mro s390x 1.29-512.fc42 fedora 45.4 KiB perl-overload noarch 1.37-512.fc42 fedora 71.5 KiB perl-overloading noarch 0.02-512.fc42 fedora 4.8 KiB perl-parent noarch 1:0.244-1.fc42 fedora 10.3 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-threads s390x 1:2.40-511.fc41 fedora 114.9 KiB perl-threads-shared s390x 1.69-511.fc41 fedora 83.5 KiB perl-vars noarch 1.05-512.fc42 fedora 3.9 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 fedora 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 s390x 3.13.1-2.fc42 fedora 22.4 KiB python3-iniconfig noarch 1.1.1-23.fc41 fedora 20.6 KiB python3-libs s390x 3.13.1-2.fc42 fedora 40.0 MiB python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB python3-pluggy noarch 1.5.0-1.fc41 fedora 193.2 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB readline-devel s390x 8.2-11.fc42 fedora 553.0 KiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB Transaction Summary: Installing: 131 packages Total size of inbound packages is 101 MiB. Need to download 14 MiB. After this operation, 329 MiB extra will be used (install 329 MiB, remove 0 B). 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Finish: build setup for python-neatdend-0.9.2-19.fc42.src.rpm Start: rpmbuild python-neatdend-0.9.2-19.fc42.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.LGdKIN + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + test -d /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/rm -rf /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ApCltN + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + rm -rf NEAT-0.9.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/python-neatdend-0.9.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd NEAT-0.9.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1721347200 + GIT_AUTHOR_DATE=@1721347200 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-neatdend-0.9.2 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-feat-support-all-arches.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/neuron/neuronmodel.py... Applied patch neat/tools/simtools/neuron/neuronmodel.py cleanly. + GIT_COMMITTER_DATE=@1721347200 + GIT_AUTHOR_DATE=@1721347200 + /usr/bin/git commit -q -m 0001-feat-support-all-arches.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/504b39822b9913e5a8c6aff65df840cc2e31167d.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/simtools/net/netsim.pyx... Applied patch neat/tools/simtools/net/netsim.pyx cleanly. + GIT_COMMITTER_DATE=@1721347200 + GIT_AUTHOR_DATE=@1721347200 + /usr/bin/git commit -q -m 504b39822b9913e5a8c6aff65df840cc2e31167d.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch + /usr/bin/git apply --index --reject - Checking patch neat/tools/plottools/scalebars.py... Applied patch neat/tools/plottools/scalebars.py cleanly. + GIT_COMMITTER_DATE=@1721347200 + GIT_AUTHOR_DATE=@1721347200 + /usr/bin/git commit -q -m 8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch --author 'rpm-build ' + sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt + sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt + sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt + sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt + sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt + sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt + sed -i 's/^cython~=0.29.4/cython>=3.0.0/' requirements/requirements.txt + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.FT3ob7 + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement not satisfied: setuptools Handling wheel from build-system.requires Requirement not satisfied: wheel Handling Cython from build-system.requires Requirement not satisfied: Cython Handling numpy from build-system.requires Requirement not satisfied: numpy Handling setuptools >= 40.8 from default build backend Requirement not satisfied: setuptools >= 40.8 Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-19.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 9.1 KiB/s | 3.2 KiB | 00m00s Copr repository 100% | 4.6 KiB/s | 1.5 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 4.8 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-15.0.0-0.2.fc42.s390x" is already installed. Package "gcc-c++-15.0.0-0.2.fc42.s390x" is already installed. Package "git-core-2.47.1-1.fc42.s390x" is already installed. Package "neuron-devel-8.2.2-11.fc41.s390x" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.s390x" is already installed. Package "python3-neuron-8.2.2-11.fc41.s390x" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-cython s390x 3.0.11-2.fc42 fedora 18.0 MiB python3-numpy s390x 1:2.2.1-1.fc42 fedora 36.0 MiB python3-pip noarch 24.3.1-1.fc42 fedora 11.3 MiB python3-setuptools noarch 74.1.3-4.fc42 fedora 8.4 MiB python3-wheel noarch 1:0.45.1-1.fc42 fedora 541.9 KiB Installing dependencies: flexiblas s390x 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib s390x 3.4.4-3.fc41 fedora 12.4 MiB flexiblas-openblas-openmp s390x 3.4.4-3.fc41 fedora 43.1 KiB libgfortran s390x 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 2.4 MiB openblas s390x 0.3.28-2.fc42 fedora 106.6 KiB openblas-openmp s390x 0.3.28-2.fc42 fedora 15.2 MiB python3-numpy-f2py s390x 1:2.2.1-1.fc42 fedora 2.0 MiB Transaction Summary: Installing: 12 packages Total size of inbound packages is 25 MiB. Need to download 4 MiB. After this operation, 106 MiB extra will be used (install 106 MiB, remove 0 B). [1/2] python3-pip-0:24.3.1-1.fc42.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/3] python3-setuptools-0:74.1.3-4.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [3/4] python3-wheel-1:0.45.1-1.fc42.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [4/5] python3-numpy-1:2.2.1-1.fc42.s390 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [5/6] flexiblas-netlib-0:3.4.4-3.fc41.s 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [6/7] python3-numpy-f2py-1:2.2.1-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [7/8] flexiblas-0:3.4.4-3.fc41.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [8/9] flexiblas-openblas-openmp-0:3.4.4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/10] openblas-openmp-0:0.3.28-2.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [10/11] openblas-0:0.3.28-2.fc42.s390x 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [11/12] libgfortran-0:15.0.0-0.2.fc42.s 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [12/12] python3-cython-0:3.0.11-2.fc42. 100% | 11.8 MiB/s | 3.9 MiB | 00m00s -------------------------------------------------------------------------------- [12/12] Total 100% | 4.9 MiB/s | 3.9 MiB | 00m01s Running transaction [ 1/14] Verify package files 100% | 157.0 B/s | 12.0 B | 00m00s [ 2/14] Prepare transaction 100% | 200.0 B/s | 12.0 B | 00m00s [ 3/14] Installing libgfortran-0:15.0.0 100% | 299.8 MiB/s | 2.4 MiB | 00m00s [ 4/14] Installing openblas-0:0.3.28-2. 100% | 0.0 B/s | 108.3 KiB | 00m00s [ 5/14] Installing openblas-openmp-0:0. 100% | 323.1 MiB/s | 15.2 MiB | 00m00s [ 6/14] Installing flexiblas-0:3.4.4-3. 100% | 0.0 B/s | 49.7 KiB | 00m00s [ 7/14] Installing flexiblas-openblas-o 100% | 0.0 B/s | 44.0 KiB | 00m00s [ 8/14] Installing flexiblas-netlib-0:3 100% | 302.4 MiB/s | 12.4 MiB | 00m00s [ 9/14] Installing python3-numpy-f2py-1 100% | 137.8 MiB/s | 2.1 MiB | 00m00s [10/14] Installing python3-numpy-1:2.2. 100% | 330.2 MiB/s | 36.3 MiB | 00m00s [11/14] Installing python3-wheel-1:0.45 100% | 91.5 MiB/s | 562.0 KiB | 00m00s [12/14] Installing python3-setuptools-0 100% | 208.7 MiB/s | 8.6 MiB | 00m00s [13/14] Installing python3-pip-0:24.3.1 100% | 207.4 MiB/s | 11.6 MiB | 00m00s [14/14] Installing python3-cython-0:3.0 100% | 224.0 MiB/s | 18.1 MiB | 00m00s Warning: skipped OpenPGP checks for 1 package from repository: https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.N6TgEh + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. Compiling neat/tools/simtools/net/netsim.pyx because it changed. [1/1] Cythonizing neat/tools/simtools/net/netsim.pyx running egg_info creating neatdend.egg-info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt writing manifest file 'neatdend.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.1) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: matplotlib>=3.4.1 Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: scipy>=1.6.3 Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: sympy>=1.7.1 Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement not satisfied: scikit-learn>=0.24.2 + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-19.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 6.1 KiB/s | 3.2 KiB | 00m01s Additional repo https_fedorapeople_org 100% | 4.3 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 5.0 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-15.0.0-0.2.fc42.s390x" is already installed. Package "gcc-c++-15.0.0-0.2.fc42.s390x" is already installed. Package "git-core-2.47.1-1.fc42.s390x" is already installed. Package "neuron-devel-8.2.2-11.fc41.s390x" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.s390x" is already installed. Package "python3-neuron-8.2.2-11.fc41.s390x" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-cython-3.0.11-2.fc42.s390x" is already installed. Package "python3-cython-3.0.11-2.fc42.s390x" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.s390x" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.s390x" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-wheel-1:0.45.1-1.fc42.noarch" is already installed. Package Arch Version Repository Size Installing: python3-matplotlib s390x 3.9.4-2.fc42 fedora 20.9 MiB python3-scikit-learn s390x 1.6.0-1.fc42 fedora 54.5 MiB python3-scipy s390x 1.14.1-2.fc42 fedora 68.0 MiB python3-sympy s390x 1.13.3-1.fc42 fedora 78.3 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB cairo s390x 1.18.2-2.fc42 fedora 1.7 MiB default-fonts-core-sans noarch 4.2-2.fc42 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB fontconfig s390x 2.15.0-8.fc41 fedora 825.6 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype s390x 2.13.3-1.fc42 fedora 934.9 KiB fribidi s390x 1.0.16-1.fc42 fedora 206.0 KiB glib2 s390x 2.83.0-3.fc42 fedora 14.9 MiB gnutls s390x 3.8.8-1.fc42 fedora 3.2 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 s390x 1.3.14-16.fc41 fedora 207.4 KiB harfbuzz s390x 10.1.0-2.fc42 fedora 2.7 MiB jbigkit-libs s390x 2.1-30.fc41 fedora 121.2 KiB lcms2 s390x 2.16-4.fc41 fedora 456.7 KiB libXft s390x 2.3.8-7.fc41 fedora 172.2 KiB libXrender s390x 0.9.12-1.fc42 fedora 48.5 KiB libimagequant s390x 4.0.3-5.fc41 fedora 835.9 KiB libjpeg-turbo s390x 3.1.0-1.fc42 fedora 742.7 KiB liblerc s390x 4.0.0-7.fc41 fedora 269.0 KiB libpng s390x 2:1.6.44-1.fc42 fedora 257.6 KiB libqhull_r s390x 1:8.0.2-5.fc41 fedora 495.2 KiB libraqm s390x 0.10.1-1.fc42 fedora 40.5 KiB libtiff s390x 4.7.0-2.fc42 fedora 658.4 KiB libwebp s390x 1.5.0-1.fc42 fedora 633.3 KiB nettle s390x 3.10-3.fc41 fedora 849.2 KiB openjpeg s390x 2.5.3-2.fc42 fedora 479.1 KiB pixman s390x 0.44.2-1.fc42 fedora 524.2 KiB python3-cairo s390x 1.25.1-5.fc41 fedora 520.3 KiB python3-charset-normalizer noarch 3.4.1-1.fc42 fedora 319.6 KiB python3-cloudpickle noarch 3.1.0-2.fc42 fedora 128.0 KiB python3-contourpy s390x 1.3.1-1.fc42 fedora 810.9 KiB python3-cycler noarch 0.11.0-13.fc41 fedora 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB python3-fonttools s390x 4.55.3-2.fc42 fedora 18.1 MiB python3-idna noarch 3.10-1.fc42 fedora 628.0 KiB python3-joblib noarch 1.4.2-4.fc42 fedora 2.1 MiB python3-kiwisolver s390x 1.4.8-1.fc42 fedora 160.8 KiB python3-matplotlib-data noarch 3.9.4-2.fc42 fedora 741.5 KiB python3-matplotlib-data-fonts noarch 3.9.4-2.fc42 fedora 7.9 MiB python3-matplotlib-tk s390x 3.9.4-2.fc42 fedora 252.3 KiB python3-mpmath noarch 1.3.0-10.fc41 fedora 5.2 MiB python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB python3-pillow s390x 11.0.0-1.fc42 fedora 4.0 MiB python3-pillow-tk s390x 11.0.0-1.fc42 fedora 72.7 KiB python3-platformdirs noarch 4.2.2-2.fc41 fedora 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 fedora 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB python3-six noarch 1.17.0-1.fc42 fedora 116.9 KiB python3-threadpoolctl noarch 3.5.0-4.fc41 fedora 136.8 KiB python3-tkinter s390x 3.13.1-2.fc42 fedora 1.9 MiB python3-urllib3 noarch 2.3.0-1.fc42 fedora 1.0 MiB tcl s390x 1:8.6.15-6.fc42 fedora 4.4 MiB tk s390x 1:8.6.15-1.fc42 fedora 3.9 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB Transaction Summary: Installing: 61 packages Total size of inbound packages is 74 MiB. Need to download 54 MiB. After this operation, 315 MiB extra will be used (install 315 MiB, remove 0 B). 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python3-pooch-0:1.8.2-3.fc41.no 100% | 1.3 MiB/s | 138.6 KiB | 00m00s [56/61] python3-scipy-0:1.14.1-2.fc42.s 100% | 8.5 MiB/s | 17.6 MiB | 00m02s [57/61] python3-mpmath-0:1.3.0-10.fc41. 100% | 8.2 MiB/s | 1.1 MiB | 00m00s [58/61] python3-cloudpickle-0:3.1.0-2.f 100% | 433.1 KiB/s | 47.2 KiB | 00m00s [59/61] python3-sympy-0:1.13.3-1.fc42.s 100% | 13.6 MiB/s | 15.5 MiB | 00m01s [60/61] python3-platformdirs-0:4.2.2-2. 100% | 458.9 KiB/s | 46.3 KiB | 00m00s [61/61] python3-matplotlib-data-fonts-0 100% | 10.6 MiB/s | 2.3 MiB | 00m00s -------------------------------------------------------------------------------- [61/61] Total 100% | 20.3 MiB/s | 53.5 MiB | 00m03s Running transaction [ 1/63] Verify package files 100% | 268.0 B/s | 61.0 B | 00m00s [ 2/63] Prepare transaction 100% | 476.0 B/s | 61.0 B | 00m00s [ 3/63] Installing fonts-filesystem-1:2 100% | 0.0 B/s | 788.0 B | 00m00s [ 4/63] Installing python3-matplotlib-d 100% | 304.3 MiB/s | 7.9 MiB | 00m00s [ 5/63] Installing 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Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.RNCjTb + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.1) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: matplotlib>=3.4.1 (installed: matplotlib 3.9.4) Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scipy>=1.6.3 (installed: scipy 1.14.1) Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: sympy>=1.7.1 (installed: sympy 1.13.3) Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scikit-learn>=0.24.2 (installed: scikit-learn 1.6.0) + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-neatdend-0.9.2-19.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 8.8 KiB/s | 3.2 KiB | 00m00s Copr repository 100% | 5.0 KiB/s | 1.5 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 4.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "gcc-15.0.0-0.2.fc42.s390x" is already installed. Package "gcc-c++-15.0.0-0.2.fc42.s390x" is already installed. Package "git-core-2.47.1-1.fc42.s390x" is already installed. Package "neuron-devel-8.2.2-11.fc41.s390x" is already installed. Package "pyproject-rpm-macros-1.16.3-1.fc42.noarch" is already installed. Package "python3-devel-3.13.1-2.fc42.s390x" is already installed. Package "python3-neuron-8.2.2-11.fc41.s390x" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-cython-3.0.11-2.fc42.s390x" is already installed. Package "python3-cython-3.0.11-2.fc42.s390x" is already installed. Package "python3-matplotlib-3.9.4-2.fc42.s390x" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.s390x" is already installed. Package "python3-numpy-1:2.2.1-1.fc42.s390x" is already installed. Package "python3-packaging-24.2-2.fc42.noarch" is already installed. Package "python3-pip-24.3.1-1.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-1.fc42.noarch" is already installed. Package "python3-scikit-learn-1.6.0-1.fc42.s390x" is already installed. Package "python3-scipy-1.14.1-2.fc42.s390x" is already installed. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Nothing to do. Package "python3-setuptools-74.1.3-4.fc42.noarch" is already installed. Package "python3-sympy-1.13.3-1.fc42.s390x" is already installed. Package "python3-wheel-1:0.45.1-1.fc42.noarch" is already installed. Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1721347200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.MuUloc + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + cd NEAT-0.9.2 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires -r Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.11) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.1) Handling setuptools >= 40.8 from default build backend Requirement satisfied: setuptools >= 40.8 (installed: setuptools 74.1.3) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/neatdend-0.9.1.dist-info' Handling numpy>=1.20.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: numpy>=1.20.2 (installed: numpy 2.2.1) Handling matplotlib>=3.4.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: matplotlib>=3.4.1 (installed: matplotlib 3.9.4) Handling cython>=3.0.0 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: cython>=3.0.0 (installed: cython 3.0.11) Handling scipy>=1.6.3 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scipy>=1.6.3 (installed: scipy 1.14.1) Handling sympy>=1.7.1 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: sympy>=1.7.1 (installed: sympy 1.13.3) Handling pytest>=5.3.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: pytest>=5.3.2 (installed: pytest 8.3.4) Handling scikit-learn>=0.24.2 from hook generated metadata: Requires-Dist (neatdend) Requirement satisfied: scikit-learn>=0.24.2 (installed: scikit-learn 1.6.0) + cat /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-buildrequires + rm -rfv neatdend-0.9.1.dist-info/ removed 'neatdend-0.9.1.dist-info/top_level.txt' removed 'neatdend-0.9.1.dist-info/METADATA' removed 'neatdend-0.9.1.dist-info/LICENSE.txt' removed directory 'neatdend-0.9.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.52WlAN + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir Processing /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running dist_info creating /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info writing /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-modern-metadata-vew6jg0b/neatdend-0.9.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: neatdend Building wheel for neatdend (pyproject.toml): started Running command Building wheel for neatdend (pyproject.toml) Warning: Multiple cython sources found for extension 'netsim': ['neat/tools/simtools/net/netsim.pyx', 'neat/tools/simtools/net/netsim.pyx'] See https://cython.readthedocs.io/en/latest/src/userguide/sharing_declarations.html for sharing declarations among Cython files. running bdist_wheel running build running build_py creating build creating build/lib.linux-s390x-cpython-313 creating build/lib.linux-s390x-cpython-313/neat copying neat/__init__.py -> build/lib.linux-s390x-cpython-313/neat copying neat/__version__.py -> build/lib.linux-s390x-cpython-313/neat creating build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/__init__.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/compartmenttree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/greenstree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/morphtree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/netree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/phystree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/sovtree.py -> build/lib.linux-s390x-cpython-313/neat/trees copying neat/trees/stree.py -> build/lib.linux-s390x-cpython-313/neat/trees creating build/lib.linux-s390x-cpython-313/neat/tools copying neat/tools/__init__.py -> build/lib.linux-s390x-cpython-313/neat/tools copying neat/tools/kernelextraction.py -> build/lib.linux-s390x-cpython-313/neat/tools creating build/lib.linux-s390x-cpython-313/neat/tools/fittools copying neat/tools/fittools/__init__.py -> build/lib.linux-s390x-cpython-313/neat/tools/fittools copying neat/tools/fittools/compartmentfitter.py -> build/lib.linux-s390x-cpython-313/neat/tools/fittools copying neat/tools/fittools/histogramsegmentation.py -> build/lib.linux-s390x-cpython-313/neat/tools/fittools copying neat/tools/fittools/iepsolver.py -> build/lib.linux-s390x-cpython-313/neat/tools/fittools copying neat/tools/fittools/zerofinding.py -> build/lib.linux-s390x-cpython-313/neat/tools/fittools creating build/lib.linux-s390x-cpython-313/neat/tools/plottools copying neat/tools/plottools/__init__.py -> build/lib.linux-s390x-cpython-313/neat/tools/plottools copying neat/tools/plottools/scalebars.py -> build/lib.linux-s390x-cpython-313/neat/tools/plottools creating build/lib.linux-s390x-cpython-313/neat/tools/simtools creating build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/__init__.py -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron copying neat/tools/simtools/neuron/neuronmodel.py -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron creating build/lib.linux-s390x-cpython-313/neat/channels copying neat/channels/__init__.py -> build/lib.linux-s390x-cpython-313/neat/channels copying neat/channels/concmechs.py -> build/lib.linux-s390x-cpython-313/neat/channels copying neat/channels/ionchannels.py -> build/lib.linux-s390x-cpython-313/neat/channels copying neat/channels/writecppcode.py -> build/lib.linux-s390x-cpython-313/neat/channels copying neat/channels/writemodfiles.py -> build/lib.linux-s390x-cpython-313/neat/channels creating build/lib.linux-s390x-cpython-313/neat/channels/channelcollection copying neat/channels/channelcollection/__init__.py -> build/lib.linux-s390x-cpython-313/neat/channels/channelcollection copying neat/channels/channelcollection/channelcollection.py -> build/lib.linux-s390x-cpython-313/neat/channels/channelcollection running egg_info writing neatdend.egg-info/PKG-INFO writing dependency_links to neatdend.egg-info/dependency_links.txt writing requirements to neatdend.egg-info/requires.txt writing top-level names to neatdend.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'neatdend.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'LICENCE.txt' adding license file 'LICENSE.txt' writing manifest file 'neatdend.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'neat.tools.simtools.net' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.net' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neat.tools.simtools.net' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neat.tools.simtools.net' to be distributed and are already explicitly excluding 'neat.tools.simtools.net' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'neat.tools.simtools.neuron.mech_storage' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'neat.tools.simtools.neuron.mech_storage' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'neat.tools.simtools.neuron.mech_storage' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'neat.tools.simtools.neuron.mech_storage' to be distributed and are already explicitly excluding 'neat.tools.simtools.neuron.mech_storage' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.cc -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Ionchannels.h -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.cc -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/NETC.h -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.cc -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Synapses.h -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/Tools.cc -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.cpp -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net copying neat/tools/simtools/net/netsim.pyx -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/net creating build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/gap.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/rel.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage copying neat/channels/compilechannels -> build/lib.linux-s390x-cpython-313/neat/channels running build_ext building 'netsim' extension creating build/temp.linux-s390x-cpython-313 creating build/temp.linux-s390x-cpython-313/neat creating build/temp.linux-s390x-cpython-313/neat/tools creating build/temp.linux-s390x-cpython-313/neat/tools/simtools creating build/temp.linux-s390x-cpython-313/neat/tools/simtools/net g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Ionchannels.cc -o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Ionchannels.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/NETC.cc -o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/NETC.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Synapses.cc -o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Synapses.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/Tools.cc -o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Tools.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -Ineat/tools/simtools/net -I/usr/lib64/python3.13/site-packages/numpy/_core/include -Ineat/tools/simtools/net/*.h -I/usr/include/python3.13 -c neat/tools/simtools/net/netsim.cpp -o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/netsim.o -w -O3 -std=gnu++11 g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Ionchannels.o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/NETC.o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Synapses.o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/Tools.o build/temp.linux-s390x-cpython-313/neat/tools/simtools/net/netsim.o -L/usr/lib64 -o build/lib.linux-s390x-cpython-313/neat/netsim.cpython-313-s390x-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting neat/channels/compilechannels -> build/scripts-3.13 changing mode of build/scripts-3.13/compilechannels from 644 to 755 installing to build/bdist.linux-s390x/wheel running install running install_lib creating build/bdist.linux-s390x creating build/bdist.linux-s390x/wheel creating build/bdist.linux-s390x/wheel/neat copying build/lib.linux-s390x-cpython-313/neat/__init__.py -> build/bdist.linux-s390x/wheel/./neat copying build/lib.linux-s390x-cpython-313/neat/__version__.py -> build/bdist.linux-s390x/wheel/./neat creating build/bdist.linux-s390x/wheel/neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/__init__.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/compartmenttree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/greenstree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/morphtree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/netree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/phystree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/sovtree.py -> build/bdist.linux-s390x/wheel/./neat/trees copying build/lib.linux-s390x-cpython-313/neat/trees/stree.py -> build/bdist.linux-s390x/wheel/./neat/trees creating build/bdist.linux-s390x/wheel/neat/tools copying build/lib.linux-s390x-cpython-313/neat/tools/__init__.py -> build/bdist.linux-s390x/wheel/./neat/tools copying build/lib.linux-s390x-cpython-313/neat/tools/kernelextraction.py -> build/bdist.linux-s390x/wheel/./neat/tools creating build/bdist.linux-s390x/wheel/neat/tools/fittools copying build/lib.linux-s390x-cpython-313/neat/tools/fittools/__init__.py -> build/bdist.linux-s390x/wheel/./neat/tools/fittools copying build/lib.linux-s390x-cpython-313/neat/tools/fittools/compartmentfitter.py -> build/bdist.linux-s390x/wheel/./neat/tools/fittools copying build/lib.linux-s390x-cpython-313/neat/tools/fittools/histogramsegmentation.py -> build/bdist.linux-s390x/wheel/./neat/tools/fittools copying build/lib.linux-s390x-cpython-313/neat/tools/fittools/iepsolver.py -> build/bdist.linux-s390x/wheel/./neat/tools/fittools copying build/lib.linux-s390x-cpython-313/neat/tools/fittools/zerofinding.py -> build/bdist.linux-s390x/wheel/./neat/tools/fittools creating build/bdist.linux-s390x/wheel/neat/tools/plottools copying build/lib.linux-s390x-cpython-313/neat/tools/plottools/__init__.py -> build/bdist.linux-s390x/wheel/./neat/tools/plottools copying build/lib.linux-s390x-cpython-313/neat/tools/plottools/scalebars.py -> build/bdist.linux-s390x/wheel/./neat/tools/plottools creating build/bdist.linux-s390x/wheel/neat/tools/simtools creating build/bdist.linux-s390x/wheel/neat/tools/simtools/neuron copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/__init__.py -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/neuronmodel.py -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron creating build/bdist.linux-s390x/wheel/neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/CaDyn.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/CaPump.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/OUClamp.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/OUConductance.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/OUReversal.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/Shunt.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/SinClamp.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/VecStim.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/WNClamp.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/gap.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/rel.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/neuron/mech_storage/release_BMK.mod -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/neuron/mech_storage creating build/bdist.linux-s390x/wheel/neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/Ionchannels.cc -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/Ionchannels.h -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/NETC.cc -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/NETC.h -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/Synapses.cc -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/Synapses.h -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/Tools.cc -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/netsim.cpp -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net copying build/lib.linux-s390x-cpython-313/neat/tools/simtools/net/netsim.pyx -> build/bdist.linux-s390x/wheel/./neat/tools/simtools/net creating build/bdist.linux-s390x/wheel/neat/channels copying build/lib.linux-s390x-cpython-313/neat/channels/__init__.py -> build/bdist.linux-s390x/wheel/./neat/channels copying build/lib.linux-s390x-cpython-313/neat/channels/concmechs.py -> build/bdist.linux-s390x/wheel/./neat/channels copying build/lib.linux-s390x-cpython-313/neat/channels/ionchannels.py -> build/bdist.linux-s390x/wheel/./neat/channels copying build/lib.linux-s390x-cpython-313/neat/channels/writecppcode.py -> build/bdist.linux-s390x/wheel/./neat/channels copying build/lib.linux-s390x-cpython-313/neat/channels/writemodfiles.py -> build/bdist.linux-s390x/wheel/./neat/channels creating build/bdist.linux-s390x/wheel/neat/channels/channelcollection copying build/lib.linux-s390x-cpython-313/neat/channels/channelcollection/__init__.py -> build/bdist.linux-s390x/wheel/./neat/channels/channelcollection copying build/lib.linux-s390x-cpython-313/neat/channels/channelcollection/channelcollection.py -> build/bdist.linux-s390x/wheel/./neat/channels/channelcollection copying build/lib.linux-s390x-cpython-313/neat/channels/compilechannels -> build/bdist.linux-s390x/wheel/./neat/channels copying build/lib.linux-s390x-cpython-313/neat/netsim.cpython-313-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/./neat running install_egg_info Copying neatdend.egg-info to build/bdist.linux-s390x/wheel/./neatdend-0.9.1-py3.13.egg-info running install_scripts creating build/bdist.linux-s390x/wheel/neatdend-0.9.1.data creating build/bdist.linux-s390x/wheel/neatdend-0.9.1.data/scripts copying build/scripts-3.13/compilechannels -> build/bdist.linux-s390x/wheel/neatdend-0.9.1.data/scripts changing mode of build/bdist.linux-s390x/wheel/neatdend-0.9.1.data/scripts/compilechannels to 755 creating build/bdist.linux-s390x/wheel/neatdend-0.9.1.dist-info/WHEEL creating '/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir/pip-wheel-53aw8vnt/.tmp-uz8yp4j6/neatdend-0.9.1-cp313-cp313-linux_s390x.whl' and adding 'build/bdist.linux-s390x/wheel' to it adding 'neat/__init__.py' adding 'neat/__version__.py' adding 'neat/netsim.cpython-313-s390x-linux-gnu.so' adding 'neat/channels/__init__.py' adding 'neat/channels/compilechannels' adding 'neat/channels/concmechs.py' adding 'neat/channels/ionchannels.py' adding 'neat/channels/writecppcode.py' adding 'neat/channels/writemodfiles.py' adding 'neat/channels/channelcollection/__init__.py' adding 'neat/channels/channelcollection/channelcollection.py' adding 'neat/tools/__init__.py' adding 'neat/tools/kernelextraction.py' adding 'neat/tools/fittools/__init__.py' adding 'neat/tools/fittools/compartmentfitter.py' adding 'neat/tools/fittools/histogramsegmentation.py' adding 'neat/tools/fittools/iepsolver.py' adding 'neat/tools/fittools/zerofinding.py' adding 'neat/tools/plottools/__init__.py' adding 'neat/tools/plottools/scalebars.py' adding 'neat/tools/simtools/net/Ionchannels.cc' adding 'neat/tools/simtools/net/Ionchannels.h' adding 'neat/tools/simtools/net/NETC.cc' adding 'neat/tools/simtools/net/NETC.h' adding 'neat/tools/simtools/net/Synapses.cc' adding 'neat/tools/simtools/net/Synapses.h' adding 'neat/tools/simtools/net/Tools.cc' adding 'neat/tools/simtools/net/netsim.cpp' adding 'neat/tools/simtools/net/netsim.pyx' adding 'neat/tools/simtools/neuron/__init__.py' adding 'neat/tools/simtools/neuron/neuronmodel.py' adding 'neat/tools/simtools/neuron/mech_storage/CaDyn.mod' adding 'neat/tools/simtools/neuron/mech_storage/CaPump.mod' adding 'neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUClamp2.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUConductance.mod' adding 'neat/tools/simtools/neuron/mech_storage/OUReversal.mod' adding 'neat/tools/simtools/neuron/mech_storage/Shunt.mod' adding 'neat/tools/simtools/neuron/mech_storage/SinClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/VecStim.mod' adding 'neat/tools/simtools/neuron/mech_storage/WNClamp.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca_.mod' adding 'neat/tools/simtools/neuron/mech_storage/conc_ca__.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_modified2.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_rescaled_prox.mod' adding 'neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA_v_from_vector.mod' adding 'neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod' adding 'neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod' adding 'neat/tools/simtools/neuron/mech_storage/gap.mod' adding 'neat/tools/simtools/neuron/mech_storage/rel.mod' adding 'neat/tools/simtools/neuron/mech_storage/release_BMK.mod' adding 'neat/trees/__init__.py' adding 'neat/trees/compartmenttree.py' adding 'neat/trees/greenstree.py' adding 'neat/trees/morphtree.py' adding 'neat/trees/netree.py' adding 'neat/trees/phystree.py' adding 'neat/trees/sovtree.py' adding 'neat/trees/stree.py' adding 'neatdend-0.9.1.data/scripts/compilechannels' adding 'neatdend-0.9.1.dist-info/LICENSE.txt' adding 'neatdend-0.9.1.dist-info/METADATA' adding 'neatdend-0.9.1.dist-info/WHEEL' adding 'neatdend-0.9.1.dist-info/top_level.txt' adding 'neatdend-0.9.1.dist-info/RECORD' removing build/bdist.linux-s390x/wheel Building wheel for neatdend (pyproject.toml): finished with status 'done' Created wheel for neatdend: filename=neatdend-0.9.1-cp313-cp313-linux_s390x.whl size=1658397 sha256=1e9d1f63949e736b39ec6f74db56459b9a6eb80baec8ada159467b4b59032e6b Stored in directory: /builddir/.cache/pip/wheels/4c/52/e5/f12a0b26b7bc958a1b068dd72e437c3fd1e5ec3827dcb974e8 Successfully built neatdend + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QEWMUi + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + '[' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-neatdend-0.9.2-build + mkdir /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 ++ ls /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir/neatdend-0.9.1-cp313-cp313-linux_s390x.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=neatdend==0.9.1 + '[' -z neatdend==0.9.1 ']' + TMPDIR=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir neatdend==0.9.1 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/pyproject-wheeldir Processing ./pyproject-wheeldir/neatdend-0.9.1-cp313-cp313-linux_s390x.whl Installing collected packages: neatdend Successfully installed neatdend-0.9.1 + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/compilechannels /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/compilechannels: updating + rm -rfv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --record /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD --output /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-record + rm -fv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD removed '/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/REQUESTED removed '/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatdend-0.9.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-files --output-modules /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-modules --buildroot /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-neatdend-0.9.2-build/python-neatdend-0.9.2-19.fc42.s390x-pyproject-record --prefix /usr -l neat + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.9.2-19.fc42 --unique-debug-suffix -0.9.2-19.fc42.s390x --unique-debug-src-base python-neatdend-0.9.2-19.fc42.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/net/netsim.pyx is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/NMDA_Mg_T.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUClamp2.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/OUConductance.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/Shunt.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/VecStim.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/WNClamp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca_.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/conc_ca__.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/double_exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/epsc_double_exp.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/exp_AMPA_NMDA.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/gap.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/rel.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech_storage/release_BMK.mod is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x/neat/tools/simtools/net/NETC.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x/neat/tools/simtools/net/NETC.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x/neat/tools/simtools/net/Synapses.cc is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x/neat/tools/simtools/net/Synapses.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/python-neatdend-0.9.2-19.fc42.s390x/neat/tools/simtools/net/Tools.cc is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/neat/channels/ionchannels.py:111: SyntaxWarning: invalid escape sequence '\o' /usr/lib64/python3.13/site-packages/neat/channels/ionchannels.py:111: SyntaxWarning: invalid escape sequence '\o' /usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:962: SyntaxWarning: invalid escape sequence '\l' /usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:962: SyntaxWarning: invalid escape sequence '\l' /usr/lib64/python3.13/site-packages/neat/trees/netree.py:21: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/neat/trees/netree.py:21: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2405: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2639: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2405: SyntaxWarning: invalid escape sequence '\m' /usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:2639: SyntaxWarning: invalid escape sequence '\m' Bytecompiling .py files below /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/__pycache__/channelcollection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/concmechs.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/writecppcode.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/writemodfiles.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/ionchannels.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/__pycache__/ionchannels.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/histogramsegmentation.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/iepsolver.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/compartmentfitter.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/zerofinding.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/zerofinding.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/histogramsegmentation.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/compartmentfitter.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/plottools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/plottools/__pycache__/scalebars.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/__pycache__/iepsolver.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/neuronmodel.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/__pycache__/neuronmodel.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/kernelextraction.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/__pycache__/kernelextraction.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/greenstree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/compartmenttree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/netree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/phystree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/morphtree.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/sovtree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/netree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/stree.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/phystree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/compartmenttree.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/__pycache__/__version__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/__pycache__/morphtree.cpython-313.opt-1.pyc: replacing with normalized version Scanned 40 directories and 135 files, processed 39 inodes, 39 modified (22 replaced + 17 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-neatdend-0.9.2-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.kg7ulY + umask 022 + cd /builddir/build/BUILD/python-neatdend-0.9.2-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd NEAT-0.9.2 + mkdir testdir ~/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/testdir ~/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 + pushd testdir + PYTHONPATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/lib/python3.13/site-packages:/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/lib64/python3.13/site-packages + /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT//usr/bin/compilechannels default Warning: no DISPLAY environment variable. --No graphics will be displayed. /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron Mod files: "mech/mech//CaDyn.mod" "mech/mech//CaPump.mod" "mech/mech//IKv3_1.mod" "mech/mech//INa_Ta.mod" "mech/mech//ISK.mod" "mech/mech//ITestChannel.mod" "mech/mech//ITestChannel2.mod" "mech/mech//Ih.mod" "mech/mech//NMDA_Mg_T.mod" "mech/mech//OUClamp.mod" "mech/mech//OUClamp2.mod" "mech/mech//OUConductance.mod" "mech/mech//OUReversal.mod" "mech/mech//Shunt.mod" "mech/mech//SinClamp.mod" "mech/mech//VecStim.mod" "mech/mech//WNClamp.mod" "mech/mech//conc_ca.mod" "mech/mech//conc_ca_.mod" "mech/mech//conc_ca__.mod" "mech/mech//double_exp_AMPA_NMDA.mod" "mech/mech//double_exp_AMPA_NMDA_modified.mod" "mech/mech//double_exp_AMPA_NMDA_modified2.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled.mod" "mech/mech//double_exp_AMPA_NMDA_rescaled_prox.mod" "mech/mech//double_exp_AMPA_NMDA_v_from_vector.mod" "mech/mech//epsc_double_exp.mod" "mech/mech//exp_AMPA_NMDA.mod" "mech/mech//gap.mod" "mech/mech//rel.mod" "mech/mech//release_BMK.mod" Creating 's390x' directory for .o files. -> Compiling mod_func.cpp -> NMODL ../mech//CaDyn.mod -> NMODL ../mech//CaPump.mod Translating CaDyn.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/CaDyn.c Translating CaPump.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/CaPump.c Thread Safe -> NMODL ../mech//IKv3_1.mod Thread Safe -> NMODL ../mech//INa_Ta.mod -> NMODL ../mech//ISK.mod Translating IKv3_1.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/IKv3_1.c Thread Safe Translating ISK.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/ISK.c Translating INa_Ta.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/INa_Ta.c Thread Safe -> NMODL ../mech//ITestChannel2.mod -> NMODL ../mech//ITestChannel.mod Thread Safe Translating ITestChannel.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/ITestChannel.c Thread Safe -> NMODL ../mech//Ih.mod Translating ITestChannel2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-package -> NMODL ../mech//NMDA_Mg_T.mod s/neat/tools/simtools/neuron/s390x/ITestChannel2.c Thread Safe -> NMODL ../mech//OUClamp.mod Translating NMDA_Mg_T.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/NMDA_Mg_T.c Notice: Use of POINTER is not thread safe. Translating Ih.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/Ih.c NEURON's CVode method ignores conservation Notice: Assignment to the GLOBAL variable, "rmd2u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd2b", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1u", is not thread safe Notice: Assignment to the GLOBAL variable, "rmd1b", is not thread safe Translating OUClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatThread Safe /tools/simtools/neuron/s390x/OUClamp.c Notice: set_seed is not thread safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE -> NMODL ../mech//OUClamp2.mod -> NMODL ../mech//OUConductance.mod -> NMODL ../mech//OUReversal.mod Translating OUClamp2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/OUClamp2.c Translating OUConductance.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packageThread Safe s/neat/tools/simtools/neuron/s390x/OUConductance.c Notice: set_seed is not thread safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE -> NMODL ../mech//SinClamp.mod -> NMODL ../mech//Shunt.mod -> NMODL ../mech//VecStim.mod Translating OUReversal.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/OUReversal.c Notice: set_seed is not thread safe Notice: normrand is not thread safe Notice: This mechanism cannot be used with CVODE Translating Shunt.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/Shunt.c Thread Safe -> NMODL ../mech//WNClamp.mod Translating SinClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neaTranslating VecStim.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/VecStim.c Notice: VERBATIM blocks are not thread safe -> NMODL ../mech//conc_ca.mod t/tools/simtools/neuron/s390x/SinClamp.c Thread Safe Translating WNClamp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neatTranslating conc_ca.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/conc_ca.c /tools/simtools/neuron/s390x/WNClamp.c Thread Safe -> NMODL ../mech//conc_ca_.mod -> NMODL ../mech//conc_ca__.mod Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA.mod Translating conc_ca_.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/conc_ca_.c -> NMODL ../mech//double_exp_AMPA_NMDA_modified.mod Thread Safe Translating double_exp_AMPA_NMDA.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA.c -> NMODL ../mech//double_exp_AMPA_NMDA_modified2.mod Translating conc_ca__.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/conc_ca__.c Thread Safe Translating double_exp_AMPA_NMDA_modified.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA_modified.c Translating double_exp_AMPA_NMDA_modified2.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA_modified2.c Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled.mod -> NMODL ../mech//double_exp_AMPA_NMDA_rescaled_prox.mod Thread Safe Thread Safe -> NMODL ../mech//double_exp_AMPA_NMDA_v_from_vector.mod Translating double_exp_AMPA_NMDA_rescaled.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA_rescaled.c -> NMODL ../mech//epsc_double_exp.mod Translating double_exp_AMPA_NMDA_rescaled_prox.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/pyThread Safe thon3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA_rescaled_prox.c Translating double_exp_AMPA_NMDA_v_from_vector.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/double_exp_AMPA_NMDA_v_from_vector.c Thread Safe Thread Safe -> NMODL ../mech//gap.mod Translating epsc_double_exp.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/epsc_double_exp.c -> NMODL ../mech//exp_AMPA_NMDA.mod Thread Safe -> NMODL ../mech//rel.mod Translating gap.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/too -> NMODL ../mech//release_BMK.mod ls/simtools/neuron/s390x/gap.c Notice: Use of POINTER is not thread safe. Translating exp_AMPA_NMDA.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/exp_AMPA_NMDA.c Thread Safe -> Compiling CaDyn.c Translating rel.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/rel.c Translating release_BMK.mod into /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/s390x/release_BMK.c Thread Safe -> Compiling CaPump.c Thread Safe -> Compiling IKv3_1.c -> Compiling INa_Ta.c In file included from /usr/include/section.h:37, from CaDyn.c:11: CaDyn.c:42:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 42 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ make: *** [makemod2c_inc:7: CaDyn.o] Error 1 make: *** Waiting for unfinished jobs.... In file included from /usr/include/section.h:37, from CaPump.c:11: CaPump.c:42:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 42 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ make: *** [makemod2c_inc:15: CaPump.o] Error 1 In file included from /usr/include/section.h:37, from INa_Ta.c:11: INa_Ta.c:43:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 43 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ INa_Ta.c: In function ‘_hoc_rates’: INa_Ta.c:302:37: error: too many arguments to function ‘hoc_getarg’ 302 | rates ( _p, _ppvar, _thread, _nt, *getarg(1) ); | ^~~~~~ INa_Ta.c:43:25: note: declared here 43 | extern double *getarg(); | ^~~~~~ In file included from /usr/include/section.h:37, from IKv3_1.c:11: IKv3_1.c:43:25: error: conflicting types for ‘hoc_getarg’; have ‘double *(void)’ 43 | extern double *getarg(); | ^~~~~~ /usr/include/oc_ansi.h:49:16: note: previous declaration of ‘hoc_getarg’ with type ‘double *(int)’ 49 | extern double* getarg(int); | ^~~~~~ IKv3_1.c: In function ‘_hoc_rates’: IKv3_1.c:284:37: error: too many arguments to function ‘hoc_getarg’ 284 | rates ( _p, _ppvar, _thread, _nt, *getarg(1) ); | ^~~~~~ IKv3_1.c:43:25: note: declared here 43 | extern double *getarg(); | ^~~~~~ make: *** [makemod2c_inc:31: INa_Ta.o] Error 1 make: *** [makemod2c_inc:23: IKv3_1.o] Error 1 --- writing channels from /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/channels/channelcollection/ to /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/mech/ Reading channels from: __init__ Reading channels from: channelcollection - write .mod file for: Kv3_1 - write .mod file for: Na_Ta - write .mod file for: SK - write .mod file for: TestChannel - write .mod file for: TestChannel2 - write .mod file for: h + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest ../ ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /builddir/build/BUILD/python-neatdend-0.9.2-build/NEAT-0.9.2 configfile: pyproject.toml collected 80 items ../tests/test_cnet.py ....F [ 6%] ../tests/test_compartmentfitter.py ..FFFFF.F. [ 18%] ../tests/test_compartmenttree.py FFFFFFF.. [ 30%] ../tests/test_greenstree.py FF [ 32%] ../tests/test_ionchannels.py F... [ 37%] ../tests/test_morphtree.py .................. [ 60%] ../tests/test_net.py .F... [ 66%] ../tests/test_neurontree.py FFF.... [ 75%] ../tests/test_phystree.py .... [ 80%] ../tests/test_sovtree.py F.F [ 83%] ../tests/test_stree.py ............. [100%] =================================== FAILURES =================================== _____________________________ TestCNET.testChannel _____________________________ self = def testChannel(self): > self.createPointNeurons() ../tests/test_cnet.py:522: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_cnet.py:50: in createPointNeurons self.sim_tree.initModel(dt=self.dt) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 1.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ___________________ TestCompartmentFitter.testChannelFitMats ___________________ self = def testChannelFitMats(self): self.loadBall() cm = CompartmentFitter(self.tree) > cm.setCTree([(1,.5)]) ../tests/test_compartmentfitter.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError _____________________ TestCompartmentFitter.testPassiveFit _____________________ self = def testPassiveFit(self): self.loadTTree() fit_locs = [(1,.5), (4,1.), (5,.5), (8,.5)] # fit a tree directly from CompartmentTree greens_tree = self.tree.__copy__(new_tree=GreensTree()) greens_tree.setCompTree() freqs = np.array([0.]) > greens_tree.setImpedance(freqs) ../tests/test_compartmentfitter.py:271: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError _______________ TestCompartmentFitter.testRecalcImpedanceMatrix ________________ self = g_inp = array([0. , 0.00052632, 0.00105263, 0.00157895, 0.00210526, 0.00263158, 0.00315789, 0.00368421, 0.004210...16, 0.00578947, 0.00631579, 0.00684211, 0.00736842, 0.00789474, 0.00842105, 0.00894737, 0.00947368, 0.01 ]) def testRecalcImpedanceMatrix(self, g_inp=np.linspace(0.,0.01, 20)): self.loadBall() fit_locs = [(1,.5)] cm = CompartmentFitter(self.tree) > cm.setCTree(fit_locs) ../tests/test_compartmentfitter.py:353: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError _____________________ TestCompartmentFitter.testSynRescale _____________________ self = sv_h = None, many_freqs = False, recompute = False, pprint = False def setImpedancesInTree(self, sv_h=None, many_freqs=False, recompute=False, pprint=False): """ Sets the impedances in the tree. Parameters ---------- sv_hs: dict of {string: np.ndarray} Keys are the channel names and values are numpy arrays that contain the expansion point for each ion channel many_freqs: bool (optional, default is ``False``) If ``True``, evaluates the impedances over an array suitable to apply the inverse Fourrier transform to obtain temporal kernel If ``False``, evaluates at zero frequency recompute: bool (optional, default is ``False``) Force the impedances to be recomputed pprint: bool (optional, default is ``False``) Print info """ cname_string = '^'.join(list(self.channel_storage.keys())) if pprint: print(f'>>> evaluating impedances with {cname_string}') if many_freqs: freqs = ke.create_logspace_freqarray() suffix = 'allfreqs_' else: freqs = np.array([0.]) suffix = '' if sv_h is not None: # check if exansion point for all channels is defined assert sv_h.keys() == self.channel_storage.keys() # adapt frequency array for broadcasting freqs = freqs[:, None] for c_name, sv in sv_h.items(): # adapt expansion point arrays for broadcasting sv = {svar: val[None,:] for svar, val in sv.items()} # for specifying the holding potentials in file name e_h_string = '^'.join(list([f'{val:.1f}' for val in sv['v'][0]])) # set the expansion point for node in self: node.setExpansionPoint(c_name, statevar=sv) else: e_h_string = '' file_name = '_'.join(['GF', suffix, self.name, e_h_string, cname_string]) + '.p' # check if impedances already exist try: # ensure that the tree is recomputed if 'recompute' is true if recompute: raise IOError > file = open(self.path + file_name, 'rb') E FileNotFoundError: [Errno 2] No such file or directory: 'GF__dont save__.p' ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:234: FileNotFoundError During handling of the above exception, another exception occurred: self = g_inp = array([0. , 0.00052632, 0.00105263, 0.00157895, 0.00210526, 0.00263158, 0.00315789, 0.00368421, 0.004210...16, 0.00578947, 0.00631579, 0.00684211, 0.00736842, 0.00789474, 0.00842105, 0.00894737, 0.00947368, 0.01 ]) def testSynRescale(self, g_inp=np.linspace(0.,0.01, 20)): e_rev, v_eq = 0., -75. self.loadBallAndStick() fit_locs = [(4,.7)] syn_locs = [(4,1.)] cm = CompartmentFitter(self.tree) cm.setCTree(fit_locs) # compute impedance matrix greens_tree = cm.createTreeGF(channel_names=[]) greens_tree.setEEq(-75.) > greens_tree.setImpedancesInTree() ../tests/test_compartmentfitter.py:398: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:243: in setImpedancesInTree self.setImpedance(freqs, pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ______________________ TestCompartmentFitter.testFitModel ______________________ self = def testFitModel(self): self.loadTTree() fit_locs = [(1,.5), (4,1.), (5,.5), (8,.5)] # fit a tree directly from CompartmentTree greens_tree = self.tree.__copy__(new_tree=GreensTree()) greens_tree.setCompTree() freqs = np.array([0.]) > greens_tree.setImpedance(freqs) ../tests/test_compartmentfitter.py:500: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ______________________ TestCompartmentFitter.testParallel ______________________ self = w_benchmark = False def testParallel(self, w_benchmark=False): self.loadTSegmentTree() locs = [(nn.index,0.5) for nn in self.tree.nodes[:30]] cm = CompartmentFitter(self.tree) > ctree_cm = cm.fitModel(locs, parallel=False, use_all_channels_for_passive=True) ../tests/test_compartmentfitter.py:561: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1134: in fitModel self.setCTree(loc_arg) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:423: in setCTree self.setEEq() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1058: in setEEq v_eqs = self.calcEEq(tree_locs + fit_locs, ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/fittools/compartmentfitter.py:1031: in calcEEq sim_tree_biophys.initModel(dt=dt, factor_lambda=factor_lambda) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:251: in initModel self._createNeuronTree(pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:271: in _createNeuronTree compartment = node._makeSection(self.factor_lambda, pprint=pprint) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = factorlambda = 10.0, pprint = False def _makeSection(self, factorlambda=1., pprint=False): compartment = h.Section(name=str(self.index)) compartment.push() # create the compartment if self.index == 1: compartment.diam = 2. * self.R # um (NEURON takes diam=2*r) compartment.L = 2. * self.R # um (to get correct surface) compartment.nseg = 1 else: compartment.diam = 2. * self.R # section radius [um] (NEURON takes diam = 2*r) compartment.L = self.L # section length [um] # set number of segments if type(factorlambda) == float: # nseg according to NEURON bookint compartment.nseg = int(((compartment.L / (0.1 * h.lambda_f(100.)) + 0.9) / 2.) * 2. + 1.) * int(factorlambda) else: compartment.nseg = factorlambda # set parameters compartment.cm = self.c_m # uF/cm^2 compartment.Ra = self.r_a*1e6 # MOhm*cm --> Ohm*cm # insert membrane currents for key, current in self.currents.items(): if current[0] > 1e-10: > compartment.insert(mechname[key]) E ValueError: argument not a density mechanism name. ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:103: ValueError ____________________ TestCompartmentTree.testTreeDerivation ____________________ self = def testTreeDerivation(self): > self.loadTTree() ../tests/test_compartmenttree.py:35: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:32: in loadTTree self.tree.calcSOVEquations() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError _______________________ TestCompartmentTree.testFitting ________________________ self = def testFitting(self): > self.loadTTree() ../tests/test_compartmenttree.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:32: in loadTTree self.tree.calcSOVEquations() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ______________________ TestCompartmentTree.testReordering ______________________ self = def testReordering(self): > self.loadTTree() ../tests/test_compartmenttree.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:32: in loadTTree self.tree.calcSOVEquations() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ___________________ TestCompartmentTree.testLocationMapping ____________________ self = n_loc = 20 def testLocationMapping(self, n_loc=20): > self.loadBallAndStick() ../tests/test_compartmenttree.py:150: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:144: in loadBallAndStick self.greens_tree.setImpedance(self.freqs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ________________________ TestCompartmentTree.testGSSFit ________________________ self = n_loc = 20 def testGSSFit(self, n_loc=20): > self.loadBallAndStick() ../tests/test_compartmenttree.py:171: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:144: in loadBallAndStick self.greens_tree.setImpedance(self.freqs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError _________________________ TestCompartmentTree.testCFit _________________________ self = n_loc = 20 def testCFit(self, n_loc=20): > self.loadBallAndStick() ../tests/test_compartmenttree.py:211: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:144: in loadBallAndStick self.greens_tree.setImpedance(self.freqs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ___________________ TestCompartmentTree.testPasFunctionality ___________________ self = n_loc = 10 def testPasFunctionality(self, n_loc=10): > self.fitBallAndStick(n_loc=n_loc) ../tests/test_compartmenttree.py:261: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_compartmenttree.py:242: in fitBallAndStick self.loadBallAndStick() ../tests/test_compartmenttree.py:144: in loadBallAndStick self.greens_tree.setImpedance(self.freqs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ______________________ TestGreensTree.testBasicProperties ______________________ self = def testBasicProperties(self): self.loadTTree() # test Fourrier impedance matrix ft = ke.FourrierTools(np.arange(0.,100.,0.1)) # set the impedances > self.tree.setImpedance(ft.s) ../tests/test_greenstree.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError __________________________ TestGreensTree.testValues ___________________________ self = def testValues(self): # load trees self.loadTTree() > self.loadSOVTTree() ../tests/test_greenstree.py:127: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_greenstree.py:53: in loadSOVTTree self.sovtree.calcSOVEquations() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ____________________________ TestChannels.testBasic ____________________________ self = def testBasic(self): tcn = channelcollection.TestChannel() v_arr = np.linspace(-80., -10., 10) factors = np.array([5.,1.]) powers = np.array([[3,3,1], [2,2,1]]) varnames = np.array([[sp.symbols('a00'), sp.symbols('a01'), sp.symbols('a02')], [sp.symbols('a10'), sp.symbols('a11'), sp.symbols('a12')]]) # state variable asymptotic values def varinf(v): aux = np.ones_like(v) if isinstance(v, np.ndarray) else 1. return np.array([[1. / (1. + np.exp((v - 30.) / 100.)), 1. / (1. + np.exp((-v + 30.) / 100.)), -10. * aux], [2. / (1. + np.exp((v - 30.) / 100.)), 2. / (1. + np.exp((-v + 30.) / 100.)), -30. * aux]]) # state variable functions def dvarinf_dv(v): aux = np.ones_like(v) if isinstance(v, np.ndarray) else 1. vi_aux = varinf(v) return np.array([[-vi_aux[0, 0, :] * (1 - vi_aux[0, 0, :]) / 100., vi_aux[0, 1, :] * (1 - vi_aux[0, 1, :]) / 100., 0. * aux], [-vi_aux[1, 0, :] * (1 - vi_aux[1, 0, :] / 2.) / 100., vi_aux[1, 1, :] * (1 - vi_aux[1, 1, :] / 2.) / 100., 0. * aux]]) # state variable relaxation time scale def taurel(v): aux = np.ones_like(v) if isinstance(v, np.ndarray) else 1. return np.array([[1. * aux, 2. * aux, 1. * aux], [2. * aux, 2. * aux, 3. * aux]]) # test whether activations are correct var_inf = varinf(v_arr) var_inf_chan = tcn.computeVarinf(v_arr) for ind, varname in np.ndenumerate(varnames): assert np.allclose(var_inf[ind], var_inf_chan[varname]) # test whether open probability is correct p_open = np.sum(factors[:, np.newaxis] * \ > np.product(var_inf ** powers[:, :, np.newaxis], 1), 0) ../tests/test_ionchannels.py:51: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'product' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) if attr == "chararray": warnings.warn( "`np.chararray` is deprecated and will be removed from " "the main namespace in the future. Use an array with a string " "or bytes dtype instead.", DeprecationWarning, stacklevel=2) import numpy.char as char return char.chararray > raise AttributeError("module {!r} has no attribute " "{!r}".format(__name__, attr)) E AttributeError: module 'numpy' has no attribute 'product' /usr/lib64/python3.13/site-packages/numpy/__init__.py:414: AttributeError _____________________________ TestNET.testKernels ______________________________ self = def testKernels(self): # kernel 1 a1 = np.array([1., 10.]) c1 = np.array([2., 20.]) k1 = Kernel((a1, c1)) # kernel 2 a2 = np.array([1., 10.]) c2 = np.array([4., 40.]) k2 = Kernel({'a': a2, 'c': c2}) # kernel 3 k3 = Kernel(1.) # kbar assert np.abs(k1.k_bar - 4.) < 1e-12 assert np.abs(k2.k_bar - 8.) < 1e-12 assert np.abs(k3.k_bar - 1.) < 1e-12 # temporal kernel > t_arr = np.array([0., np.infty]) ../tests/test_net.py:57: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ____________________________ TestNeuron.testPassive ____________________________ self = , pplot = False def testPassive(self, pplot=False): > self.loadTTreePassive() ../tests/test_neurontree.py:138: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_neurontree.py:46: in loadTTreePassive self.greenstree.setImpedance(self.ft.s) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ____________________________ TestNeuron.testActive _____________________________ self = , pplot = False def testActive(self, pplot=False): > self.loadTTreeActive() ../tests/test_neurontree.py:169: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_neurontree.py:74: in loadTTreeActive self.greenstree.setImpedance(self.ft.s) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError _______________________ TestNeuron.testChannelRecording ________________________ self = def testChannelRecording(self): > self.loadTTreeTestChannel() ../tests/test_neurontree.py:200: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../tests/test_neurontree.py:102: in loadTTreeTestChannel self.greenstree.setImpedance(self.ft.s) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:297: in setImpedance self._impedanceFromLeaf(self.leafs[0], self.leafs[1:], pprint=pprint) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:316: in _impedanceFromLeaf node._setImpedanceDistal() ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/greenstree.py:134: in _setImpedanceDistal z_aux *= np.infty _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'infty' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.infty` was removed in the NumPy 2.0 release. Use `np.inf` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ________________________ TestSOVTree.testSOVCalculation ________________________ self = def testSOVCalculation(self): # validate the calculation on analytical model self.loadValidationTree() # do SOV calculation > self.tree.calcSOVEquations() ../tests/test_sovtree.py:43: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError ________________________ TestSOVTree.testNETDerivation _________________________ self = def testNETDerivation(self): # initialize self.loadValidationTree() > self.tree.calcSOVEquations() ../tests/test_sovtree.py:140: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/morphtree.py:64: in wrapped res = fun(self, *args, **kwargs) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:339: in calcSOVEquations for node in self: node._setSOV(self.channel_storage, tau_0=self.tau_0) ../../BUILDROOT/usr/lib64/python3.13/site-packages/neat/trees/sovtree.py:51: in _setSOV self.kappa_m = np.NaN _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ attr = 'NaN' def __getattr__(attr): # Warn for expired attributes import warnings if attr == "linalg": import numpy.linalg as linalg return linalg elif attr == "fft": import numpy.fft as fft return fft elif attr == "dtypes": import numpy.dtypes as dtypes return dtypes elif attr == "random": import numpy.random as random return random elif attr == "polynomial": import numpy.polynomial as polynomial return polynomial elif attr == "ma": import numpy.ma as ma return ma elif attr == "ctypeslib": import numpy.ctypeslib as ctypeslib return ctypeslib elif attr == "exceptions": import numpy.exceptions as exceptions return exceptions elif attr == "testing": import numpy.testing as testing return testing elif attr == "matlib": import numpy.matlib as matlib return matlib elif attr == "f2py": import numpy.f2py as f2py return f2py elif attr == "typing": import numpy.typing as typing return typing elif attr == "rec": import numpy.rec as rec return rec elif attr == "char": import numpy.char as char return char elif attr == "array_api": raise AttributeError("`numpy.array_api` is not available from " "numpy 2.0 onwards", name=None) elif attr == "core": import numpy.core as core return core elif attr == "strings": import numpy.strings as strings return strings elif attr == "distutils": if 'distutils' in __numpy_submodules__: import numpy.distutils as distutils return distutils else: raise AttributeError("`numpy.distutils` is not available from " "Python 3.12 onwards", name=None) if attr in __future_scalars__: # And future warnings for those that will change, but also give # the AttributeError warnings.warn( f"In the future `np.{attr}` will be defined as the " "corresponding NumPy scalar.", FutureWarning, stacklevel=2) if attr in __former_attrs__: raise AttributeError(__former_attrs__[attr], name=None) if attr in __expired_attributes__: > raise AttributeError( f"`np.{attr}` was removed in the NumPy 2.0 release. " f"{__expired_attributes__[attr]}", name=None ) E AttributeError: `np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead. /usr/lib64/python3.13/site-packages/numpy/__init__.py:400: AttributeError =============================== warnings summary =============================== tests/test_compartmentfitter.py: 2 warnings tests/test_neurontree.py: 90 warnings /builddir/build/BUILD/python-neatdend-0.9.2-build/BUILDROOT/usr/lib64/python3.13/site-packages/neat/tools/simtools/neuron/neuronmodel.py:763: DeprecationWarning: neuron.run(tstop) is deprecated; use h.stdinit() and h.continuerun(tstop) instead neuron.run(t_max + self.t_calibrate) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED ../tests/test_cnet.py::TestCNET::testChannel - ValueError: argument no... FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testChannelFitMats FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testPassiveFit FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testRecalcImpedanceMatrix FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testSynRescale FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testFitModel FAILED ../tests/test_compartmentfitter.py::TestCompartmentFitter::testParallel FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testTreeDerivation FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testFitting - A... FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testReordering FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testLocationMapping FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testGSSFit - At... FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testCFit - Attr... FAILED ../tests/test_compartmenttree.py::TestCompartmentTree::testPasFunctionality FAILED ../tests/test_greenstree.py::TestGreensTree::testBasicProperties - Att... FAILED ../tests/test_greenstree.py::TestGreensTree::testValues - AttributeErr... FAILED ../tests/test_ionchannels.py::TestChannels::testBasic - AttributeError... FAILED ../tests/test_net.py::TestNET::testKernels - AttributeError: `np.infty... FAILED ../tests/test_neurontree.py::TestNeuron::testPassive - AttributeError:... FAILED ../tests/test_neurontree.py::TestNeuron::testActive - AttributeError: ... FAILED ../tests/test_neurontree.py::TestNeuron::testChannelRecording - Attrib... FAILED ../tests/test_sovtree.py::TestSOVTree::testSOVCalculation - AttributeE... FAILED ../tests/test_sovtree.py::TestSOVTree::testNETDerivation - AttributeEr... ================= 23 failed, 57 passed, 92 warnings in 12.28s ================== error: RPM build errors: Bad exit status from /var/tmp/rpm-tmp.kg7ulY (%check) Bad exit status from /var/tmp/rpm-tmp.kg7ulY (%check) Finish: rpmbuild python-neatdend-0.9.2-19.fc42.src.rpm Finish: build phase for python-neatdend-0.9.2-19.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1736281610.623727/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/python-neatdend-0.9.2-19.fc42.src.rpm) Config(fedora-rawhide-s390x) 1 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M 7afb7cc5de844f96b0392941d56ce2b7 -D /var/lib/mock/fedora-rawhide-s390x-1736281610.623727/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.liudcqd1:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --target s390x /builddir/build/originals/python-neatdend.spec' Copr build error: Build failed