Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1d4' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8430685-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64
Version: 1.2
PID: 31093
Logging PID: 31094
Task:
{'allow_user_ssh': False,
'appstream': False,
'background': True,
'build_id': 8430685,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': '8dfc40a0bafa39ac3f2b98ba7ebc1fc7e3d0b18d',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/smoldyn',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'smoldyn',
'package_version': '2.72-5',
'project_dirname': 'gcc-15-smoketest-3',
'project_name': 'gcc-15-smoketest-3',
'project_owner': 'dmalcolm',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None},
{'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch',
'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch',
'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}],
'sandbox': 'dmalcolm/gcc-15-smoketest-3--dmalcolm',
'source_json': {},
'source_type': None,
'ssh_public_keys': None,
'storage': 0,
'submitter': 'dmalcolm',
'tags': [],
'task_id': '8430685-fedora-rawhide-x86_64',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn'...
Running: git checkout 8dfc40a0bafa39ac3f2b98ba7ebc1fc7e3d0b18d --
cmd: ['git', 'checkout', '8dfc40a0bafa39ac3f2b98ba7ebc1fc7e3d0b18d', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn
rc: 0
stdout:
stderr: Note: switching to '8dfc40a0bafa39ac3f2b98ba7ebc1fc7e3d0b18d'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 8dfc40a automatic import of smoldyn
Running: dist-git-client sources
cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Smoldyn-2.72.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o Smoldyn-2.72.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3/smoldyn/Smoldyn-2.72.tar.gz/md5/55177f82859a034ac5418e6894089192/Smoldyn-2.72.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 96.4M 100 96.4M 0 0 13.6M 0 0:00:07 0:00:07 --:--:-- 13.5M
INFO: Reading stdout from command: md5sum Smoldyn-2.72.tar.gz
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734955923.319866 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734955923.319866 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734955923.319866/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-4ed02e0a-7ac0-4a3e-a14d-3bda24736352
INFO: Checking that ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc image matches host's architecture
INFO: Copy content of container ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734955923.319866/root
INFO: mounting ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc with podman image mount
INFO: image ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc as /var/lib/containers/storage/overlay/ec5ea1f8b388555c3b1873271a816ac146565bb8d86913b7b6c74bfbc9efcccd/merged
INFO: umounting image ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc (/var/lib/containers/storage/overlay/ec5ea1f8b388555c3b1873271a816ac146565bb8d86913b7b6c74bfbc9efcccd/merged) with podman image umount
INFO: Removing image mock-bootstrap-4ed02e0a-7ac0-4a3e-a14d-3bda24736352
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734955923.319866/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
dnf5-5.2.8.1-2.fc42.x86_64
dnf5-plugins-5.2.8.1-2.fc42.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
fedora 100% | 1.0 MiB/s | 27.5 KiB | 00m00s
Copr repository 100% | 51.2 KiB/s | 1.5 KiB | 00m00s
Additional repo https_fedorapeople_org 100% | 24.6 KiB/s | 1.5 KiB | 00m00s
Copr repository 100% | 45.6 MiB/s | 8.8 MiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing group/module packages:
bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB
bzip2 x86_64 1.0.8-19.fc42 copr_base 96.9 KiB
coreutils x86_64 9.5-11.fc42 copr_base 5.5 MiB
cpio x86_64 2.15-2.fc41 fedora 1.1 MiB
diffutils x86_64 3.10-8.fc42 copr_base 1.6 MiB
fedora-release-common noarch 42-0.11 fedora 19.8 KiB
findutils x86_64 1:4.10.0-4.fc42 copr_base 1.9 MiB
gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB
glibc-minimal-langpack x86_64 2.40.9000-24.fc42 copr_base 0.0 B
grep x86_64 3.11-9.fc42 copr_base 1.0 MiB
gzip x86_64 1.13-2.fc42 copr_base 391.0 KiB
info x86_64 7.1.1-2.fc42 fedora 361.8 KiB
patch x86_64 2.7.6-25.fc42 copr_base 259.1 KiB
redhat-rpm-config noarch 300-1.no_annobin.0.fc42 copr_base 186.6 KiB
rpm-build x86_64 4.20.0-1.fc42 copr_base 185.8 KiB
sed x86_64 4.9-3.fc42 copr_base 858.9 KiB
shadow-utils x86_64 2:4.17.0~rc1-1.fc42 copr_base 4.1 MiB
tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB
unzip x86_64 6.0-65.fc42 fedora 398.2 KiB
util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB
which x86_64 2.21-42.fc41 fedora 80.2 KiB
xz x86_64 1:5.6.3-2.fc42 fedora 1.2 MiB
Installing dependencies:
add-determinism x86_64 0.4.3-1.fc42 copr_base 2.4 MiB
alternatives x86_64 1.31-1.fc42 fedora 64.8 KiB
ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB
audit-libs x86_64 4.0.2-1.fc42 copr_base 331.3 KiB
authselect x86_64 1.5.0-8.fc42 copr_base 156.0 KiB
authselect-libs x86_64 1.5.0-8.fc42 copr_base 820.0 KiB
basesystem noarch 11-21.fc41 fedora 0.0 B
binutils x86_64 2.43.50-9.fc42 copr_base 25.6 MiB
build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 copr_base 735.0 B
bzip2-libs x86_64 1.0.8-19.fc42 copr_base 83.2 KiB
ca-certificates noarch 2024.2.69_v8.0.401-3.fc42 fedora 2.6 MiB
coreutils-common x86_64 9.5-11.fc42 copr_base 11.2 MiB
cracklib x86_64 2.9.11-6.fc42 copr_base 238.1 KiB
crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB
curl x86_64 8.11.1-2.fc42 copr_base 452.0 KiB
cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB
debugedit x86_64 5.1-2.fc42 copr_base 197.7 KiB
dwz x86_64 0.15-8.fc42 copr_base 295.7 KiB
ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB
efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB
elfutils x86_64 0.192-7.fc42 copr_base 2.6 MiB
elfutils-debuginfod-client x86_64 0.192-7.fc42 copr_base 81.4 KiB
elfutils-default-yama-scope noarch 0.192-7.fc42 copr_base 1.8 KiB
elfutils-libelf x86_64 0.192-7.fc42 copr_base 1.2 MiB
elfutils-libs x86_64 0.192-7.fc42 copr_base 662.9 KiB
fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB
fedora-release noarch 42-0.11 fedora 0.0 B
fedora-release-identity-basic noarch 42-0.11 fedora 719.0 B
fedora-repos noarch 42-0.3 fedora 4.9 KiB
fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB
file x86_64 5.45-8.fc42 fedora 103.7 KiB
file-libs x86_64 5.45-8.fc42 fedora 9.9 MiB
filesystem x86_64 3.18-29.fc42 fedora 106.0 B
filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB
fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB
forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB
fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B
gdb-minimal x86_64 15.2-4.fc42 copr_base 12.8 MiB
gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB
gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB
ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B
glibc x86_64 2.40.9000-24.fc42 copr_base 6.5 MiB
glibc-common x86_64 2.40.9000-24.fc42 copr_base 1.0 MiB
glibc-gconv-extra x86_64 2.40.9000-24.fc42 copr_base 8.0 MiB
gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB
gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB
go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB
jansson x86_64 2.14-1.fc42 copr_base 90.8 KiB
json-c x86_64 0.18-1.fc42 copr_base 83.7 KiB
kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB
keyutils-libs x86_64 1.6.3-4.fc42 copr_base 56.8 KiB
krb5-libs x86_64 1.21.3-3.fc42 copr_base 2.3 MiB
libacl x86_64 2.3.2-2.fc42 copr_base 38.3 KiB
libarchive x86_64 3.7.7-1.fc42 copr_base 927.2 KiB
libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB
libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB
libbrotli x86_64 1.1.0-5.fc42 copr_base 836.4 KiB
libcap x86_64 2.71-1.fc42 copr_base 223.4 KiB
libcap-ng x86_64 0.8.5-3.fc42 copr_base 70.8 KiB
libcom_err x86_64 1.47.1-6.fc42 fedora 67.2 KiB
libcurl x86_64 8.11.1-2.fc42 copr_base 829.3 KiB
libeconf x86_64 0.7.5-1.fc42 copr_base 66.7 KiB
libevent x86_64 2.1.12-14.fc42 copr_base 887.3 KiB
libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB
libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB
libgcc x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 266.9 KiB
libgomp x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 529.3 KiB
libidn2 x86_64 2.3.7-2.fc42 copr_base 327.7 KiB
libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB
libnghttp2 x86_64 1.64.0-1.fc42 fedora 174.5 KiB
libnsl2 x86_64 2.0.1-2.fc42 copr_base 56.3 KiB
libpkgconf x86_64 2.3.0-1.fc42 copr_base 76.2 KiB
libpsl x86_64 0.21.5-4.fc42 copr_base 79.3 KiB
libpwquality x86_64 1.4.5-11.fc42 copr_base 417.0 KiB
libselinux x86_64 3.8-0.rc3.1.fc42 fedora 191.6 KiB
libsemanage x86_64 3.8-0.rc3.1.fc42 fedora 305.3 KiB
libsepol x86_64 3.8-0.rc3.1.fc42 fedora 812.3 KiB
libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB
libssh x86_64 0.11.1-1.fc42 copr_base 559.9 KiB
libssh-config noarch 0.11.1-1.fc42 copr_base 277.0 B
libstdc++ x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 2.7 MiB
libtasn1 x86_64 4.19.0-9.fc42 copr_base 177.7 KiB
libtirpc x86_64 1.3.6-1.fc42 fedora 205.5 KiB
libtool-ltdl x86_64 2.5.4-1.fc42 copr_base 68.1 KiB
libunistring x86_64 1.1-8.fc42 copr_base 1.7 MiB
libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB
libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB
libxcrypt x86_64 4.4.36-12.fc42 fedora 269.3 KiB
libxml2 x86_64 2.12.8-2.fc42 copr_base 1.7 MiB
libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB
lua-libs x86_64 5.4.7-1.fc42 fedora 285.0 KiB
lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB
lz4-libs x86_64 1.10.0-1.fc42 copr_base 159.5 KiB
mpfr x86_64 4.2.1-5.fc42 copr_base 829.0 KiB
ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB
ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB
ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB
openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B
openldap x86_64 2.6.8-6.fc42 copr_base 647.4 KiB
openssl-libs x86_64 1:3.2.2-8.fc42 copr_base 7.7 MiB
p11-kit x86_64 0.25.5-4.fc42 copr_base 2.1 MiB
p11-kit-trust x86_64 0.25.5-4.fc42 copr_base 392.7 KiB
package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB
pam x86_64 1.7.0-3.fc42 copr_base 1.8 MiB
pam-libs x86_64 1.7.0-3.fc42 copr_base 134.8 KiB
pcre2 x86_64 10.44-1.fc42.1 copr_base 652.6 KiB
pcre2-syntax noarch 10.44-1.fc42.1 copr_base 251.6 KiB
perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B
pkgconf x86_64 2.3.0-1.fc42 copr_base 87.2 KiB
pkgconf-m4 noarch 2.3.0-1.fc42 copr_base 14.4 KiB
pkgconf-pkg-config x86_64 2.3.0-1.fc42 copr_base 989.0 B
popt x86_64 1.19-7.fc42 copr_base 134.9 KiB
publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB
pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB
python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB
qt5-srpm-macros noarch 5.15.15-1.fc42 copr_base 500.0 B
qt6-srpm-macros noarch 6.8.1-4.fc42 copr_base 456.0 B
readline x86_64 8.2-11.fc42 copr_base 485.7 KiB
rpm x86_64 4.20.0-1.fc42 copr_base 3.1 MiB
rpm-build-libs x86_64 4.20.0-1.fc42 copr_base 204.1 KiB
rpm-libs x86_64 4.20.0-1.fc42 copr_base 714.4 KiB
rpm-sequoia x86_64 1.7.0-3.fc42 copr_base 2.3 MiB
rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB
setup noarch 2.15.0-5.fc41 fedora 720.7 KiB
sqlite-libs x86_64 3.47.2-1.fc42 fedora 1.4 MiB
systemd-libs x86_64 257.1-1.fc42 fedora 2.2 MiB
util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB
xxhash-libs x86_64 0.8.2-4.fc42 fedora 88.4 KiB
xz-libs x86_64 1:5.6.3-2.fc42 fedora 218.4 KiB
zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB
zip x86_64 3.0-42.fc42 fedora 695.9 KiB
zlib-ng-compat x86_64 2.2.2-1.fc42 fedora 134.0 KiB
zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB
Installing groups:
Buildsystem building group
Transaction Summary:
Installing: 155 packages
Total size of inbound packages is 51 MiB. Need to download 0 B.
After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B).
[1/1] tar-2:1.35-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/2] unzip-0:6.0-65.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/3] cpio-0:2.15-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/4] which-0:2.21-42.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/5] bash-0:5.2.37-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[5/5] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/6] fedora-release-common-0:42-0.11.n 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[6/6] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/7] info-0:7.1.1-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[7/7] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[1/8] xz-1:5.6.3-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/10] redhat-rpm-config-0:300-1.no_an 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/11] rpm-build-0:4.20.0-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/12] coreutils-0:9.5-11.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/13] grep-0:3.11-9.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/14] patch-0:2.7.6-25.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/15] sed-0:4.9-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/16] shadow-utils-2:4.17.0~rc1-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/17] util-linux-0:2.40.2-8.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[17/17] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/18] diffutils-0:3.10-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/19] findutils-1:4.10.0-4.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/20] gawk-0:5.3.0-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/21] glibc-minimal-langpack-0:2.40.9 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/22] gzip-0:1.13-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/23] filesystem-0:3.18-29.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/24] ncurses-libs-0:6.5-2.20240629.f 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/25] fedora-repos-0:42-0.3.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
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>>> Already downloaded
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[ 1/27] ansible-srpm-macros-0:1-16.fc41 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/28] efi-srpm-macros-0:5-13.fc42.noa 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/29] file-0:5.45-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/30] filesystem-srpm-macros-0:3.18-2 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/31] fonts-srpm-macros-1:2.0.5-17.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/32] forge-srpm-macros-0:0.4.0-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/33] fpc-srpm-macros-0:1.3-13.fc41.n 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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>>> Already downloaded
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[ 1/35] gnat-srpm-macros-0:6-6.fc41.noa 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/36] go-srpm-macros-0:3.6.0-5.fc42.n 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/37] kernel-srpm-macros-0:1.0-24.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/38] lua-srpm-macros-0:1-14.fc41.noa 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/39] ocaml-srpm-macros-0:10-3.fc41.n 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/40] openblas-srpm-macros-0:2-18.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/41] package-notes-srpm-macros-0:0.5 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/42] perl-srpm-macros-0:1-56.fc41.no 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/43] pyproject-srpm-macros-0:1.16.3- 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/44] python-srpm-macros-0:3.13-3.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/45] rust-srpm-macros-0:26.3-3.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/46] zig-srpm-macros-0:1-3.fc41.noar 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/47] zip-0:3.0-42.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/48] zstd-0:1.5.6-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/49] gmp-1:6.3.0-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/50] libattr-0:2.5.2-4.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/51] systemd-libs-0:257.1-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/52] ed-0:1.20.2-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/53] libxcrypt-0:4.4.36-12.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/54] setup-0:2.15.0-5.fc41.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/55] libblkid-0:2.40.2-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/56] libfdisk-0:2.40.2-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/57] libmount-0:2.40.2-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/58] libsmartcols-0:2.40.2-8.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/59] libuuid-0:2.40.2-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/60] util-linux-core-0:2.40.2-8.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/61] zlib-ng-compat-0:2.2.2-1.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/62] ncurses-base-0:6.5-2.20240629.f 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/63] fedora-gpg-keys-0:42-0.3.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/64] fedora-repos-rawhide-0:42-0.3.n 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/65] file-libs-0:5.45-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/66] audit-libs-0:4.0.2-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/67] glibc-0:2.40.9000-24.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/68] basesystem-0:11-21.fc41.noarch 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/69] libacl-0:2.3.2-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/70] libeconf-0:0.7.5-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/71] libselinux-0:3.8-0.rc3.1.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/72] libsepol-0:3.8-0.rc3.1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/73] libsemanage-0:3.8-0.rc3.1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/74] pam-libs-0:1.7.0-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/75] binutils-0:2.43.50-9.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/76] debugedit-0:5.1-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/77] elfutils-0:0.192-7.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/78] elfutils-libelf-0:0.192-7.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/79] libzstd-0:1.5.6-2.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/80] libarchive-0:3.7.7-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/81] pkgconf-pkg-config-0:2.3.0-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/82] popt-0:1.19-7.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/83] readline-0:8.2-11.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/84] rpm-0:4.20.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/85] rpm-build-libs-0:4.20.0-1.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/86] lua-libs-0:5.4.7-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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>>> Already downloaded
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[ 1/88] sqlite-libs-0:3.47.2-1.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/89] curl-0:8.11.1-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/90] glibc-gconv-extra-0:2.40.9000-2 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/91] build-reproducibility-srpm-macr 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/92] dwz-0:0.15-8.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/93] qt5-srpm-macros-0:5.15.15-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/95] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/96] pkgconf-m4-0:2.3.0-1.fc42.noarc 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/98] bzip2-libs-0:1.0.8-19.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/99] libxml2-0:2.12.8-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/101] openssl-libs-1:3.2.2-8.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[ 1/102] ca-certificates-0:2024.2.69_v 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/103] crypto-policies-0:20241128-1. 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/104] pcre2-0:10.44-1.fc42.1.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/105] pcre2-syntax-0:10.44-1.fc42.1 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/106] glibc-common-0:2.40.9000-24.f 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/107] libgcc-0:15.0.0-0.2.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/108] libffi-0:3.4.6-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
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[ 1/109] elfutils-debuginfod-client-0: 100% | 0.0 B/s | 0.0 B | 00m00s
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>>> Already downloaded
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[110/110] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/111] libstdc++-0:15.0.0-0.2.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[111/111] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/112] coreutils-common-0:9.5-11.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[112/112] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/113] libcap-0:2.71-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[113/113] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/114] add-determinism-0:0.4.3-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[114/114] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/115] alternatives-0:1.31-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[115/115] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/116] jansson-0:2.14-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[116/116] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/117] libcap-ng-0:0.8.5-3.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[117/117] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/118] authselect-libs-0:1.5.0-8.fc4 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[118/118] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/119] pam-0:1.7.0-3.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[119/119] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/120] gdbm-1:1.23-7.fc41.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[120/120] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/121] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[121/121] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/122] libtirpc-0:1.3.6-1.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[122/122] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/123] libcom_err-0:1.47.1-6.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[123/123] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/124] krb5-libs-0:1.21.3-3.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[124/124] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/125] libverto-0:0.3.2-9.fc41.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[125/125] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/126] mpfr-0:4.2.1-5.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[126/126] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/127] p11-kit-0:0.25.5-4.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[127/127] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/128] p11-kit-trust-0:0.25.5-4.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[128/128] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/129] rpm-sequoia-0:1.7.0-3.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[129/129] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/130] libgomp-0:15.0.0-0.2.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[130/130] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/131] authselect-0:1.5.0-8.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[131/131] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/132] libnsl2-0:2.0.1-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[132/132] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/133] libpwquality-0:1.4.5-11.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[133/133] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/134] libtasn1-0:4.19.0-9.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[134/134] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/135] cracklib-0:2.9.11-6.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[135/135] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/136] keyutils-libs-0:1.6.3-4.fc42. 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[136/136] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/137] elfutils-default-yama-scope-0 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[137/137] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/138] json-c-0:0.18-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[138/138] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/139] gdb-minimal-0:15.2-4.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[139/139] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/140] xxhash-libs-0:0.8.2-4.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[140/140] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/141] libcurl-0:8.11.1-2.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[141/141] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/142] libnghttp2-0:1.64.0-1.fc42.x8 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[142/142] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/143] fedora-release-0:42-0.11.noar 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[143/143] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/144] fedora-release-identity-basic 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[144/144] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/145] libbrotli-0:1.1.0-5.fc42.x86_ 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[145/145] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/146] libidn2-0:2.3.7-2.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[146/146] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/147] libpsl-0:0.21.5-4.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[147/147] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/148] publicsuffix-list-dafsa-0:202 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[148/148] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/149] libssh-0:0.11.1-1.fc42.x86_64 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[149/149] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/150] openldap-0:2.6.8-6.fc42.x86_6 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[150/150] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/151] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[151/151] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/152] libevent-0:2.1.12-14.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[152/152] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/153] libtool-ltdl-0:2.5.4-1.fc42.x 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/154] libssh-config-0:0.11.1-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s
[ 1/155] libunistring-0:1.1-8.fc42.x86 100% | 0.0 B/s | 0.0 B | 00m00s
>>> Already downloaded
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[155/155] Total 100% | 0.0 B/s | 0.0 B | 00m00s
Running transaction
Importing OpenPGP key 0x105EF944:
UserID : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
UserID : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
UserID : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
UserID : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
Fingerprint: C6E7F081CF80E13146676E88829B606631645531
From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[ 1/157] Verify package files 100% | 714.0 B/s | 155.0 B | 00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1734955923.319866/root/var/cache/d
[ 2/157] Prepare transaction 100% | 1.8 KiB/s | 155.0 B | 00m00s
[ 3/157] Installing libgcc-0:15.0.0-0. 100% | 131.2 MiB/s | 268.6 KiB | 00m00s
[ 4/157] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s
[ 5/157] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s
[ 6/157] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s
[ 7/157] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s
[ 8/157] Installing fedora-gpg-keys-0: 100% | 18.7 MiB/s | 172.2 KiB | 00m00s
[ 9/157] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s
[ 10/157] Installing fedora-release-com 100% | 11.8 MiB/s | 24.1 KiB | 00m00s
[ 11/157] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s
[ 12/157] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/157] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 212.6 KiB | 00m00s
[ 14/157] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s
[ 15/157] Installing coreutils-common-0 100% | 243.3 MiB/s | 11.2 MiB | 00m00s
[ 16/157] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s
[ 17/157] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s
[ 18/157] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s
[ 19/157] Installing qt5-srpm-macros-0: 100% | 757.8 KiB/s | 776.0 B | 00m00s
[ 20/157] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s
[ 21/157] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s
[ 22/157] Installing ncurses-libs-0:6.5 100% | 159.8 MiB/s | 981.8 KiB | 00m00s
[ 23/157] Installing glibc-0:2.40.9000- 100% | 225.6 MiB/s | 6.5 MiB | 00m00s
[ 24/157] Installing bash-0:5.2.37-1.fc 100% | 255.3 MiB/s | 8.2 MiB | 00m00s
[ 25/157] Installing glibc-common-0:2.4 100% | 129.7 MiB/s | 1.0 MiB | 00m00s
[ 26/157] Installing glibc-gconv-extra- 100% | 158.5 MiB/s | 8.1 MiB | 00m00s
[ 27/157] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.9 KiB | 00m00s
[ 28/157] Installing xz-libs-1:5.6.3-2. 100% | 214.3 MiB/s | 219.5 KiB | 00m00s
[ 29/157] Installing bzip2-libs-0:1.0.8 100% | 82.3 MiB/s | 84.3 KiB | 00m00s
[ 30/157] Installing libuuid-0:2.40.2-8 100% | 41.5 MiB/s | 42.5 KiB | 00m00s
[ 31/157] Installing popt-0:1.19-7.fc42 100% | 34.6 MiB/s | 141.6 KiB | 00m00s
[ 32/157] Installing readline-0:8.2-11. 100% | 238.2 MiB/s | 487.9 KiB | 00m00s
[ 33/157] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB | 00m00s
[ 34/157] Installing gmp-1:6.3.0-2.fc41 100% | 264.9 MiB/s | 813.7 KiB | 00m00s
[ 35/157] Installing libattr-0:2.5.2-4. 100% | 28.8 MiB/s | 29.5 KiB | 00m00s
[ 36/157] Installing libacl-0:2.3.2-2.f 100% | 38.2 MiB/s | 39.2 KiB | 00m00s
[ 37/157] Installing libxcrypt-0:4.4.36 100% | 132.8 MiB/s | 272.0 KiB | 00m00s
[ 38/157] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s
[ 39/157] Installing elfutils-libelf-0: 100% | 291.8 MiB/s | 1.2 MiB | 00m00s
[ 40/157] Installing libstdc++-0:15.0.0 100% | 275.1 MiB/s | 2.8 MiB | 00m00s
[ 41/157] Installing libeconf-0:0.7.5-1 100% | 66.8 MiB/s | 68.4 KiB | 00m00s
[ 42/157] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s
[ 43/157] Installing dwz-0:0.15-8.fc42. 100% | 145.1 MiB/s | 297.1 KiB | 00m00s
[ 44/157] Installing mpfr-0:4.2.1-5.fc4 100% | 202.8 MiB/s | 830.6 KiB | 00m00s
[ 45/157] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s | 1.7 MiB | 00m00s
[ 46/157] Installing unzip-0:6.0-65.fc4 100% | 130.8 MiB/s | 401.7 KiB | 00m00s
[ 47/157] Installing file-libs-0:5.45-8 100% | 496.9 MiB/s | 9.9 MiB | 00m00s
[ 48/157] Installing file-0:5.45-8.fc42 100% | 7.9 MiB/s | 105.2 KiB | 00m00s
[ 49/157] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.7 KiB | 00m00s
[ 50/157] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s
[ 51/157] Installing libsepol-0:3.8-0.r 100% | 198.5 MiB/s | 813.3 KiB | 00m00s
[ 52/157] Installing lua-libs-0:5.4.7-1 100% | 139.7 MiB/s | 286.2 KiB | 00m00s
[ 53/157] Installing lz4-libs-0:1.10.0- 100% | 156.9 MiB/s | 160.6 KiB | 00m00s
[ 54/157] Installing pcre2-0:10.44-1.fc 100% | 212.9 MiB/s | 654.0 KiB | 00m00s
[ 55/157] Installing libselinux-0:3.8-0 100% | 188.4 MiB/s | 192.9 KiB | 00m00s
[ 56/157] Installing sed-0:4.9-3.fc42.x 100% | 121.0 MiB/s | 867.1 KiB | 00m00s
[ 57/157] Installing findutils-1:4.10.0 100% | 186.7 MiB/s | 1.9 MiB | 00m00s
[ 58/157] Installing grep-0:3.11-9.fc42 100% | 125.0 MiB/s | 1.0 MiB | 00m00s
[ 59/157] Installing xz-1:5.6.3-2.fc42. 100% | 123.7 MiB/s | 1.2 MiB | 00m00s
[ 60/157] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB | 00m00s
[ 61/157] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s
[ 62/157] Installing alternatives-0:1.3 100% | 64.8 MiB/s | 66.4 KiB | 00m00s
[ 63/157] Installing libcap-ng-0:0.8.5- 100% | 71.0 MiB/s | 72.7 KiB | 00m00s
[ 64/157] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s
[ 65/157] Installing pam-libs-0:1.7.0-3 100% | 67.0 MiB/s | 137.2 KiB | 00m00s
[ 66/157] Installing libcap-0:2.71-1.fc 100% | 74.3 MiB/s | 228.3 KiB | 00m00s
[ 67/157] Installing systemd-libs-0:257 100% | 246.7 MiB/s | 2.2 MiB | 00m00s
[ 68/157] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s
[ 69/157] Installing libtasn1-0:4.19.0- 100% | 87.7 MiB/s | 179.5 KiB | 00m00s
[ 70/157] Installing p11-kit-0:0.25.5-4 100% | 152.7 MiB/s | 2.1 MiB | 00m00s
[ 71/157] Installing libunistring-0:1.1 100% | 287.7 MiB/s | 1.7 MiB | 00m00s
[ 72/157] Installing libidn2-0:2.3.7-2. 100% | 81.5 MiB/s | 333.7 KiB | 00m00s
[ 73/157] Installing libpsl-0:0.21.5-4. 100% | 78.5 MiB/s | 80.4 KiB | 00m00s
[ 74/157] Installing p11-kit-trust-0:0. 100% | 24.1 MiB/s | 394.4 KiB | 00m00s
[ 75/157] Installing openssl-libs-1:3.2 100% | 286.1 MiB/s | 7.7 MiB | 00m00s
[ 76/157] Installing coreutils-0:9.5-11 100% | 142.5 MiB/s | 5.6 MiB | 00m00s
[ 77/157] Installing ca-certificates-0: 100% | 1.1 MiB/s | 2.4 MiB | 00m02s
[ 78/157] Installing gzip-0:1.13-2.fc42 100% | 96.8 MiB/s | 396.5 KiB | 00m00s
[ 79/157] Installing authselect-libs-0: 100% | 90.6 MiB/s | 835.0 KiB | 00m00s
[ 80/157] Installing cracklib-0:2.9.11- 100% | 34.8 MiB/s | 249.4 KiB | 00m00s
[ 81/157] Installing libpwquality-0:1.4 100% | 52.4 MiB/s | 429.3 KiB | 00m00s
[ 82/157] Installing rpm-sequoia-0:1.7. 100% | 258.2 MiB/s | 2.3 MiB | 00m00s
[ 83/157] Installing libevent-0:2.1.12- 100% | 217.5 MiB/s | 891.1 KiB | 00m00s
[ 84/157] Installing util-linux-core-0: 100% | 138.9 MiB/s | 1.5 MiB | 00m00s
[ 85/157] Installing libsemanage-0:3.8- 100% | 100.0 MiB/s | 307.1 KiB | 00m00s
[ 86/157] Installing shadow-utils-2:4.1 100% | 124.7 MiB/s | 4.1 MiB | 00m00s
[ 87/157] Installing tar-2:1.35-4.fc41. 100% | 227.6 MiB/s | 3.0 MiB | 00m00s
[ 88/157] Installing zstd-0:1.5.6-2.fc4 100% | 281.9 MiB/s | 1.7 MiB | 00m00s
[ 89/157] Installing zip-0:3.0-42.fc42. 100% | 170.9 MiB/s | 699.8 KiB | 00m00s
[ 90/157] Installing gdbm-1:1.23-7.fc41 100% | 113.7 MiB/s | 465.8 KiB | 00m00s
[ 91/157] Installing cyrus-sasl-lib-0:2 100% | 256.2 MiB/s | 2.3 MiB | 00m00s
[ 92/157] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB | 00m00s
[ 93/157] Installing bzip2-0:1.0.8-19.f 100% | 49.5 MiB/s | 101.4 KiB | 00m00s
[ 94/157] Installing libxml2-0:2.12.8-2 100% | 241.4 MiB/s | 1.7 MiB | 00m00s
[ 95/157] Installing libarchive-0:3.7.7 100% | 226.9 MiB/s | 929.2 KiB | 00m00s
[ 96/157] Installing sqlite-libs-0:3.47 100% | 239.0 MiB/s | 1.4 MiB | 00m00s
[ 97/157] Installing rpm-libs-0:4.20.0- 100% | 233.0 MiB/s | 715.9 KiB | 00m00s
[ 98/157] Installing add-determinism-0: 100% | 262.3 MiB/s | 2.4 MiB | 00m00s
[ 99/157] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s
[100/157] Installing filesystem-srpm-ma 100% | 35.9 MiB/s | 36.8 KiB | 00m00s
[101/157] Installing ed-0:1.20.2-2.fc41 100% | 72.8 MiB/s | 149.2 KiB | 00m00s
[102/157] Installing patch-0:2.7.6-25.f 100% | 127.3 MiB/s | 260.6 KiB | 00m00s
[103/157] Installing elfutils-default-y 100% | 204.3 KiB/s | 2.0 KiB | 00m00s
[104/157] Installing elfutils-libs-0:0. 100% | 162.3 MiB/s | 664.7 KiB | 00m00s
[105/157] Installing cpio-0:2.15-2.fc41 100% | 137.5 MiB/s | 1.1 MiB | 00m00s
[106/157] Installing diffutils-0:3.10-8 100% | 175.8 MiB/s | 1.6 MiB | 00m00s
[107/157] Installing libpkgconf-0:2.3.0 100% | 75.5 MiB/s | 77.4 KiB | 00m00s
[108/157] Installing pkgconf-0:2.3.0-1. 100% | 43.8 MiB/s | 89.7 KiB | 00m00s
[109/157] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s
[110/157] Installing jansson-0:2.14-1.f 100% | 90.0 MiB/s | 92.2 KiB | 00m00s
[111/157] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s
[112/157] Installing libgomp-0:15.0.0-0 100% | 259.1 MiB/s | 530.7 KiB | 00m00s
[113/157] Installing rpm-build-libs-0:4 100% | 200.1 MiB/s | 204.9 KiB | 00m00s
[114/157] Installing keyutils-libs-0:1. 100% | 56.9 MiB/s | 58.2 KiB | 00m00s
[115/157] Installing krb5-libs-0:1.21.3 100% | 208.6 MiB/s | 2.3 MiB | 00m00s
[116/157] Installing libtirpc-0:1.3.6-1 100% | 101.2 MiB/s | 207.3 KiB | 00m00s
[117/157] Installing libnsl2-0:2.0.1-2. 100% | 56.1 MiB/s | 57.4 KiB | 00m00s
[118/157] Installing pam-0:1.7.0-3.fc42 100% | 79.6 MiB/s | 1.8 MiB | 00m00s
[119/157] Installing libssh-0:0.11.1-1. 100% | 183.0 MiB/s | 562.0 KiB | 00m00s
[120/157] Installing json-c-0:0.18-1.fc 100% | 83.0 MiB/s | 85.0 KiB | 00m00s
[121/157] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.8 KiB | 00m00s
[122/157] Installing libnghttp2-0:1.64. 100% | 171.5 MiB/s | 175.6 KiB | 00m00s
[123/157] Installing libbrotli-0:1.1.0- 100% | 204.8 MiB/s | 838.7 KiB | 00m00s
[124/157] Installing libtool-ltdl-0:2.5 100% | 67.6 MiB/s | 69.2 KiB | 00m00s
[125/157] Installing openldap-0:2.6.8-6 100% | 159.0 MiB/s | 651.2 KiB | 00m00s
[126/157] Installing libcurl-0:8.11.1-2 100% | 202.7 MiB/s | 830.4 KiB | 00m00s
[127/157] Installing elfutils-debuginfo 100% | 40.9 MiB/s | 83.8 KiB | 00m00s
[128/157] Installing binutils-0:2.43.50 100% | 272.6 MiB/s | 25.6 MiB | 00m00s
[129/157] Installing elfutils-0:0.192-7 100% | 203.2 MiB/s | 2.6 MiB | 00m00s
[130/157] Installing gdb-minimal-0:15.2 100% | 311.4 MiB/s | 12.8 MiB | 00m00s
[131/157] Installing debugedit-0:5.1-2. 100% | 97.9 MiB/s | 200.4 KiB | 00m00s
[132/157] Installing curl-0:8.11.1-2.fc 100% | 22.2 MiB/s | 454.5 KiB | 00m00s
[133/157] Installing rpm-0:4.20.0-1.fc4 100% | 89.4 MiB/s | 2.5 MiB | 00m00s
[134/157] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s
[135/157] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s
[136/157] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s
[137/157] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s
[138/157] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s
[139/157] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s
[140/157] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s
[141/157] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s
[142/157] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s
[143/157] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s
[144/157] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s
[145/157] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s
[146/157] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s
[147/157] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s
[148/157] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s
[149/157] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s
[150/157] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s
[151/157] Installing redhat-rpm-config- 100% | 62.9 MiB/s | 193.2 KiB | 00m00s
[152/157] Installing rpm-build-0:4.20.0 100% | 47.4 MiB/s | 194.3 KiB | 00m00s
[153/157] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s
[154/157] Installing util-linux-0:2.40. 100% | 90.6 MiB/s | 3.7 MiB | 00m00s
[155/157] Installing authselect-0:1.5.0 100% | 39.2 MiB/s | 160.4 KiB | 00m00s
[156/157] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s
[157/157] Installing info-0:7.1.1-2.fc4 100% | 133.5 KiB/s | 362.2 KiB | 00m03s
Warning: skipped OpenPGP checks for 80 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.4.3-1.fc42.x86_64
alternatives-1.31-1.fc42.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc42.x86_64
authselect-1.5.0-8.fc42.x86_64
authselect-libs-1.5.0-8.fc42.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.x86_64
binutils-2.43.50-9.fc42.x86_64
build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch
bzip2-1.0.8-19.fc42.x86_64
bzip2-libs-1.0.8-19.fc42.x86_64
ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch
coreutils-9.5-11.fc42.x86_64
coreutils-common-9.5-11.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc42.x86_64
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-2.fc42.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-2.fc42.x86_64
diffutils-3.10-8.fc42.x86_64
dwz-0.15-8.fc42.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.x86_64
elfutils-debuginfod-client-0.192-7.fc42.x86_64
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.x86_64
elfutils-libs-0.192-7.fc42.x86_64
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.11.noarch
fedora-release-common-42-0.11.noarch
fedora-release-identity-basic-42-0.11.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.x86_64
file-libs-5.45-8.fc42.x86_64
filesystem-3.18-29.fc42.x86_64
filesystem-srpm-macros-3.18-29.fc42.noarch
findutils-4.10.0-4.fc42.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-4.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-24.fc42.x86_64
glibc-common-2.40.9000-24.fc42.x86_64
glibc-gconv-extra-2.40.9000-24.fc42.x86_64
glibc-minimal-langpack-2.40.9000-24.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc42.x86_64
gzip-1.13-2.fc42.x86_64
info-7.1.1-2.fc42.x86_64
jansson-2.14-1.fc42.x86_64
json-c-0.18-1.fc42.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc42.x86_64
krb5-libs-1.21.3-3.fc42.x86_64
libacl-2.3.2-2.fc42.x86_64
libarchive-3.7.7-1.fc42.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc42.x86_64
libbrotli-1.1.0-5.fc42.x86_64
libcap-2.71-1.fc42.x86_64
libcap-ng-0.8.5-3.fc42.x86_64
libcom_err-1.47.1-6.fc42.x86_64
libcurl-8.11.1-2.fc42.x86_64
libeconf-0.7.5-1.fc42.x86_64
libevent-2.1.12-14.fc42.x86_64
libfdisk-2.40.2-8.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-15.0.0-0.2.fc42.x86_64
libgomp-15.0.0-0.2.fc42.x86_64
libidn2-2.3.7-2.fc42.x86_64
libmount-2.40.2-8.fc42.x86_64
libnghttp2-1.64.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc42.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc42.x86_64
libpwquality-1.4.5-11.fc42.x86_64
libselinux-3.8-0.rc3.1.fc42.x86_64
libsemanage-3.8-0.rc3.1.fc42.x86_64
libsepol-3.8-0.rc3.1.fc42.x86_64
libsmartcols-2.40.2-8.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-15.0.0-0.2.fc42.x86_64
libtasn1-4.19.0-9.fc42.x86_64
libtirpc-1.3.6-1.fc42.x86_64
libtool-ltdl-2.5.4-1.fc42.x86_64
libunistring-1.1-8.fc42.x86_64
libuuid-2.40.2-8.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-12.fc42.x86_64
libxml2-2.12.8-2.fc42.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.7-1.fc42.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc42.x86_64
mpfr-4.2.1-5.fc42.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.x86_64
openssl-libs-3.2.2-8.fc42.x86_64
p11-kit-0.25.5-4.fc42.x86_64
p11-kit-trust-0.25.5-4.fc42.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.x86_64
pam-libs-1.7.0-3.fc42.x86_64
patch-2.7.6-25.fc42.x86_64
pcre2-10.44-1.fc42.1.x86_64
pcre2-syntax-10.44-1.fc42.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc42.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-300-1.no_annobin.0.fc42.noarch
rpm-4.20.0-1.fc42.x86_64
rpm-build-4.20.0-1.fc42.x86_64
rpm-build-libs-4.20.0-1.fc42.x86_64
rpm-libs-4.20.0-1.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc42.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.17.0~rc1-1.fc42.x86_64
sqlite-libs-3.47.2-1.fc42.x86_64
systemd-libs-257.1-1.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-65.fc42.x86_64
util-linux-2.40.2-8.fc42.x86_64
util-linux-core-2.40.2-8.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc42.x86_64
xz-5.6.3-2.fc42.x86_64
xz-libs-5.6.3-2.fc42.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.x86_64
zlib-ng-compat-2.2.2-1.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721433600
Wrote: /builddir/build/SRPMS/smoldyn-2.72-5.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1734955923.319866/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-02kflzbh/smoldyn/smoldyn.spec) Config(child) 0 minutes 21 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.72-5.fc42.src.rpm) Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734955923.319866/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734955923.319866/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734955923.319866/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.20.0-1.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
dnf5-5.2.8.1-2.fc42.x86_64
dnf5-plugins-5.2.8.1-2.fc42.x86_64
Finish: chroot init
Start: build phase for smoldyn-2.72-5.fc42.src.rpm
Start: build setup for smoldyn-2.72-5.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721433600
Wrote: /builddir/build/SRPMS/smoldyn-2.72-5.fc42.src.rpm
Updating and loading repositories:
fedora 100% | 1.0 MiB/s | 27.5 KiB | 00m00s
Copr repository 100% | 53.0 KiB/s | 1.5 KiB | 00m00s
Additional repo https_fedorapeople_org 100% | 28.8 KiB/s | 1.5 KiB | 00m00s
Repositories loaded.
Package Arch Version Repository Size
Installing:
boost-devel x86_64 1.83.0-9.fc42 fedora 143.0 MiB
cmake x86_64 3.31.2-1.fc42 copr_base 33.5 MiB
freeglut-devel x86_64 3.6.0-2.fc41 fedora 2.3 MiB
gcc x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 109.9 MiB
gcc-c++ x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 40.7 MiB
libXi-devel x86_64 1.8.2-1.fc42 fedora 132.5 KiB
libXmu-devel x86_64 1.2.1-2.fc41 fedora 66.2 KiB
libglvnd-devel x86_64 1:1.7.0-5.fc42 copr_base 2.1 MiB
libtiff-devel x86_64 4.7.0-2.fc42 copr_base 761.9 KiB
make x86_64 1:4.4.1-9.fc42 copr_base 1.8 MiB
perl-macros noarch 4:5.40.0-512.fc42 copr_base 5.5 KiB
pybind11-devel x86_64 2.13.6-1.fc42 copr_base 847.8 KiB
python3-devel x86_64 3.13.1-2.fc42 copr_base 1.8 MiB
python3-flaky noarch 3.8.1-3.fc41 fedora 129.4 KiB
python3-matplotlib x86_64 3.9.4-2.fc42 copr_base 21.0 MiB
python3-setuptools noarch 74.1.3-4.fc42 copr_base 8.4 MiB
python3-wheel noarch 1:0.45.1-1.fc42 copr_base 541.9 KiB
xorg-x11-server-Xvfb x86_64 21.1.15-1.fc42 fedora 1.8 MiB
zlib-ng-compat-devel x86_64 2.2.2-1.fc42 fedora 106.8 KiB
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB
annobin-docs noarch 12.79-1.fc42 copr_base 98.6 KiB
annobin-plugin-gcc x86_64 12.79-1.fc42 copr_base 989.3 KiB
boost x86_64 1.83.0-9.fc42 fedora 1.3 KiB
boost-atomic x86_64 1.83.0-9.fc42 fedora 23.7 KiB
boost-chrono x86_64 1.83.0-9.fc42 fedora 39.8 KiB
boost-container x86_64 1.83.0-9.fc42 fedora 67.7 KiB
boost-context x86_64 1.83.0-9.fc42 fedora 15.5 KiB
boost-contract x86_64 1.83.0-9.fc42 fedora 99.8 KiB
boost-coroutine x86_64 1.83.0-9.fc42 fedora 23.8 KiB
boost-date-time x86_64 1.83.0-9.fc42 fedora 15.3 KiB
boost-fiber x86_64 1.83.0-9.fc42 fedora 79.8 KiB
boost-filesystem x86_64 1.83.0-9.fc42 fedora 144.0 KiB
boost-graph x86_64 1.83.0-9.fc42 fedora 332.2 KiB
boost-iostreams x86_64 1.83.0-9.fc42 fedora 91.7 KiB
boost-json x86_64 1.83.0-9.fc42 fedora 328.0 KiB
boost-locale x86_64 1.83.0-9.fc42 fedora 592.3 KiB
boost-log x86_64 1.83.0-9.fc42 fedora 1.4 MiB
boost-math x86_64 1.83.0-9.fc42 fedora 647.4 KiB
boost-nowide x86_64 1.83.0-9.fc42 fedora 27.7 KiB
boost-numpy3 x86_64 1.83.0-9.fc42 fedora 55.7 KiB
boost-program-options x86_64 1.83.0-9.fc42 fedora 263.8 KiB
boost-python3 x86_64 1.83.0-9.fc42 fedora 247.2 KiB
boost-random x86_64 1.83.0-9.fc42 fedora 27.8 KiB
boost-regex x86_64 1.83.0-9.fc42 fedora 267.7 KiB
boost-serialization x86_64 1.83.0-9.fc42 fedora 426.2 KiB
boost-stacktrace x86_64 1.83.0-9.fc42 fedora 64.2 KiB
boost-system x86_64 1.83.0-9.fc42 fedora 15.3 KiB
boost-test x86_64 1.83.0-9.fc42 fedora 622.6 KiB
boost-thread x86_64 1.83.0-9.fc42 fedora 131.9 KiB
boost-timer x86_64 1.83.0-9.fc42 fedora 23.7 KiB
boost-type_erasure x86_64 1.83.0-9.fc42 fedora 55.8 KiB
boost-wave x86_64 1.83.0-9.fc42 fedora 624.5 KiB
cairo x86_64 1.18.2-2.fc42 copr_base 1.8 MiB
cmake-data noarch 3.31.2-1.fc42 copr_base 8.5 MiB
cmake-filesystem x86_64 3.31.2-1.fc42 copr_base 0.0 B
cmake-rpm-macros noarch 3.31.2-1.fc42 copr_base 7.5 KiB
cpp x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 37.5 MiB
default-fonts-core-sans noarch 4.2-2.fc42 fedora 11.9 KiB
dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB
emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B
expat x86_64 2.6.4-1.fc42 copr_base 287.7 KiB
flexiblas x86_64 3.4.4-3.fc42 copr_base 48.5 KiB
flexiblas-netlib x86_64 3.4.4-3.fc42 copr_base 10.6 MiB
flexiblas-openblas-openmp x86_64 3.4.4-3.fc42 copr_base 42.3 KiB
fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB
fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B
freeglut x86_64 3.6.0-2.fc41 fedora 471.9 KiB
freetype x86_64 2.13.3-1.fc42 copr_base 843.5 KiB
fribidi x86_64 1.0.16-1.fc42 copr_base 191.9 KiB
gcc-plugin-annobin x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 59.6 KiB
glib2 x86_64 2.83.0-3.fc42 copr_base 14.6 MiB
glibc-devel x86_64 2.40.9000-24.fc42 copr_base 2.3 MiB
gnutls x86_64 3.8.8-1.fc42 copr_base 3.2 MiB
google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB
google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB
graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB
groff-base x86_64 1.23.0-7.fc42 copr_base 3.8 MiB
harfbuzz x86_64 10.1.0-2.fc42 copr_base 2.7 MiB
hwdata noarch 0.390-1.fc42 fedora 9.3 MiB
jbigkit-libs x86_64 2.1-30.fc42 copr_base 118.9 KiB
jsoncpp x86_64 1.9.5-8.fc42 copr_base 260.8 KiB
kernel-headers x86_64 6.13.0-0.rc3.29.fc42 fedora 6.5 MiB
lcms2 x86_64 2.16-4.fc42 copr_base 428.2 KiB
libICE x86_64 1.1.2-1.fc42 fedora 192.2 KiB
libICE-devel x86_64 1.1.2-1.fc42 fedora 261.8 KiB
libSM x86_64 1.2.5-1.fc42 fedora 99.6 KiB
libSM-devel x86_64 1.2.5-1.fc42 fedora 18.8 KiB
libX11 x86_64 1.8.10-2.fc42 fedora 1.3 MiB
libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB
libX11-devel x86_64 1.8.10-2.fc42 fedora 1.0 MiB
libX11-xcb x86_64 1.8.10-2.fc42 fedora 15.0 KiB
libXau x86_64 1.0.12-1.fc42 fedora 75.8 KiB
libXau-devel x86_64 1.0.12-1.fc42 fedora 7.5 KiB
libXdmcp x86_64 1.1.5-2.fc41 fedora 82.3 KiB
libXext x86_64 1.3.6-2.fc41 fedora 90.1 KiB
libXext-devel x86_64 1.3.6-2.fc41 fedora 98.9 KiB
libXfixes x86_64 6.0.1-4.fc41 fedora 30.3 KiB
libXfixes-devel x86_64 6.0.1-4.fc41 fedora 9.2 KiB
libXfont2 x86_64 2.0.7-1.fc41 fedora 338.7 KiB
libXft x86_64 2.3.8-7.fc41 fedora 164.5 KiB
libXi x86_64 1.8.2-1.fc42 fedora 80.7 KiB
libXmu x86_64 1.2.1-2.fc41 fedora 191.5 KiB
libXrender x86_64 0.9.12-1.fc42 fedora 48.8 KiB
libXt x86_64 1.3.1-1.fc42 fedora 432.9 KiB
libXt-devel x86_64 1.3.1-1.fc42 fedora 1.6 MiB
libXxf86vm x86_64 1.1.6-1.fc42 fedora 28.2 KiB
libb2 x86_64 0.98.1-12.fc42 copr_base 44.8 KiB
libdrm x86_64 2.4.124-1.fc42 copr_base 397.7 KiB
libdrm-devel x86_64 2.4.124-1.fc42 copr_base 708.5 KiB
libedit x86_64 3.1-53.20240808cvs.fc42 copr_base 239.2 KiB
libfontenc x86_64 1.1.8-2.fc42 copr_base 69.6 KiB
libgfortran x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 3.3 MiB
libglvnd x86_64 1:1.7.0-5.fc42 copr_base 475.8 KiB
libglvnd-core-devel x86_64 1:1.7.0-5.fc42 copr_base 40.3 KiB
libglvnd-egl x86_64 1:1.7.0-5.fc42 copr_base 66.3 KiB
libglvnd-gles x86_64 1:1.7.0-5.fc42 copr_base 100.8 KiB
libglvnd-glx x86_64 1:1.7.0-5.fc42 copr_base 592.7 KiB
libglvnd-opengl x86_64 1:1.7.0-5.fc42 copr_base 142.4 KiB
libicu x86_64 76.1-1.fc42 copr_base 36.3 MiB
libicu-devel x86_64 76.1-1.fc42 copr_base 5.0 MiB
libimagequant x86_64 4.0.3-5.fc42 copr_base 659.0 KiB
libjpeg-turbo x86_64 3.0.4-1.fc42 copr_base 788.8 KiB
libjpeg-turbo-devel x86_64 3.0.4-1.fc42 copr_base 353.3 KiB
liblerc x86_64 4.0.0-7.fc42 copr_base 629.9 KiB
liblerc-devel x86_64 4.0.0-7.fc42 copr_base 4.3 MiB
libmpc x86_64 1.3.1-6.fc42 copr_base 162.0 KiB
libpciaccess x86_64 0.16-13.fc41 fedora 44.6 KiB
libpciaccess-devel x86_64 0.16-13.fc41 fedora 15.3 KiB
libpng x86_64 2:1.6.44-1.fc42 copr_base 240.5 KiB
libqhull_r x86_64 1:8.0.2-5.fc42 copr_base 482.4 KiB
libquadmath x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 319.5 KiB
libquadmath-devel x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 21.9 KiB
libraqm x86_64 0.10.1-1.fc42 copr_base 31.4 KiB
libstdc++-devel x86_64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 15.7 MiB
libtiff x86_64 4.7.0-2.fc42 copr_base 616.5 KiB
libunwind x86_64 1.8.0-5.fc42 fedora 179.5 KiB
libuuid-devel x86_64 2.40.2-8.fc42 fedora 40.9 KiB
libuv x86_64 1:1.49.2-1.fc42 copr_base 559.4 KiB
libwayland-client x86_64 1.23.0-2.fc41 fedora 62.1 KiB
libwayland-server x86_64 1.23.0-2.fc41 fedora 78.6 KiB
libwebp x86_64 1.5.0-1.fc42 fedora 814.4 KiB
libwebp-devel x86_64 1.5.0-1.fc42 fedora 121.2 KiB
libxcb x86_64 1.17.0-3.fc42 fedora 1.2 MiB
libxcb-devel x86_64 1.17.0-3.fc42 fedora 2.7 MiB
libxcrypt-devel x86_64 4.4.36-12.fc42 fedora 30.5 KiB
libxkbfile x86_64 1.1.3-2.fc42 copr_base 199.3 KiB
libxshmfence x86_64 1.3.2-5.fc42 fedora 12.8 KiB
libzstd-devel x86_64 1.5.6-2.fc41 fedora 202.4 KiB
llvm-libs x86_64 19.1.5-1.fc42 copr_base 122.5 MiB
lm_sensors-libs x86_64 3.6.0-20.fc42 copr_base 84.3 KiB
mesa-dri-drivers x86_64 24.3.1-1.fc42 copr_base 150.3 MiB
mesa-filesystem x86_64 24.3.1-1.fc42 copr_base 3.6 KiB
mesa-libEGL x86_64 24.3.1-1.fc42 copr_base 331.9 KiB
mesa-libGL x86_64 24.3.1-1.fc42 copr_base 415.1 KiB
mesa-libGL-devel x86_64 24.3.1-1.fc42 copr_base 80.9 KiB
mesa-libGLU x86_64 9.0.3-5.fc42 copr_base 358.4 KiB
mesa-libGLU-devel x86_64 9.0.3-5.fc42 copr_base 17.0 KiB
mesa-libgbm x86_64 24.3.1-1.fc42 copr_base 76.8 KiB
mesa-libglapi x86_64 24.3.1-1.fc42 copr_base 162.4 KiB
mpdecimal x86_64 2.5.1-16.fc42 copr_base 200.0 KiB
ncurses x86_64 6.5-2.20240629.fc41 fedora 627.3 KiB
nettle x86_64 3.10-3.fc42 copr_base 793.6 KiB
openblas x86_64 0.3.28-2.fc42 copr_base 106.6 KiB
openblas-openmp x86_64 0.3.28-2.fc42 copr_base 39.1 MiB
openjpeg x86_64 2.5.2-4.fc42 copr_base 445.1 KiB
perl-AutoLoader noarch 5.74-512.fc42 copr_base 20.5 KiB
perl-B x86_64 1.89-512.fc42 copr_base 500.1 KiB
perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB
perl-Class-Struct noarch 0.68-512.fc42 copr_base 25.4 KiB
perl-Data-Dumper x86_64 2.189-512.fc42 copr_base 114.6 KiB
perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB
perl-Digest-MD5 x86_64 2.59-5.fc42 copr_base 62.7 KiB
perl-DynaLoader x86_64 1.56-512.fc42 copr_base 32.1 KiB
perl-Encode x86_64 4:3.21-511.fc42 copr_base 4.7 MiB
perl-Errno x86_64 1.38-512.fc42 copr_base 8.4 KiB
perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB
perl-Fcntl x86_64 1.18-512.fc42 copr_base 48.0 KiB
perl-File-Basename noarch 2.86-512.fc42 copr_base 14.0 KiB
perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB
perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB
perl-File-stat noarch 1.14-512.fc42 copr_base 12.5 KiB
perl-FileHandle noarch 2.05-512.fc42 copr_base 9.3 KiB
perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB
perl-Getopt-Std noarch 1.14-512.fc42 copr_base 11.2 KiB
perl-HTTP-Tiny noarch 0.090-1.fc42 fedora 154.4 KiB
perl-IO x86_64 1.55-512.fc42 copr_base 149.9 KiB
perl-IO-Socket-IP noarch 0.43-1.fc42 fedora 100.3 KiB
perl-IO-Socket-SSL noarch 2.089-1.fc42 fedora 703.3 KiB
perl-IPC-Open3 noarch 1.22-512.fc42 copr_base 22.5 KiB
perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB
perl-MIME-Base64 x86_64 3.16-511.fc42 copr_base 45.1 KiB
perl-Net-SSLeay x86_64 1.94-7.fc42 copr_base 1.3 MiB
perl-POSIX x86_64 2.20-512.fc42 copr_base 233.3 KiB
perl-PathTools x86_64 3.91-511.fc42 copr_base 178.9 KiB
perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB
perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB
perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB
perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB
perl-Scalar-List-Utils x86_64 5:1.68-1.fc42 copr_base 147.5 KiB
perl-SelectSaver noarch 1.02-512.fc42 copr_base 2.2 KiB
perl-Socket x86_64 4:2.038-511.fc42 copr_base 122.8 KiB
perl-Storable x86_64 1:3.32-511.fc42 copr_base 234.5 KiB
perl-Symbol noarch 1.09-512.fc42 copr_base 6.8 KiB
perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB
perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB
perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB
perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB
perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB
perl-URI noarch 5.31-1.fc42 fedora 257.0 KiB
perl-base noarch 2.27-512.fc42 copr_base 12.5 KiB
perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB
perl-if noarch 0.61.000-512.fc42 copr_base 5.8 KiB
perl-interpreter x86_64 4:5.40.0-512.fc42 copr_base 121.2 KiB
perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB
perl-libs x86_64 4:5.40.0-512.fc42 copr_base 9.8 MiB
perl-locale noarch 1.12-512.fc42 copr_base 6.5 KiB
perl-mro x86_64 1.29-512.fc42 copr_base 44.6 KiB
perl-overload noarch 1.37-512.fc42 copr_base 71.5 KiB
perl-overloading noarch 0.02-512.fc42 copr_base 4.8 KiB
perl-parent noarch 1:0.244-1.fc42 fedora 10.3 KiB
perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB
perl-vars noarch 1.05-512.fc42 copr_base 3.9 KiB
pixman x86_64 0.44.2-1.fc42 copr_base 664.5 KiB
pyproject-rpm-macros noarch 1.16.3-1.fc42 fedora 113.7 KiB
python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB
python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB
python3 x86_64 3.13.1-2.fc42 copr_base 30.6 KiB
python3-cairo x86_64 1.25.1-5.fc42 copr_base 487.5 KiB
python3-contourpy x86_64 1.3.1-1.fc42 copr_base 806.5 KiB
python3-cycler noarch 0.11.0-13.fc41 fedora 37.6 KiB
python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB
python3-fonttools x86_64 4.55.2-1.fc42 copr_base 18.1 MiB
python3-kiwisolver x86_64 1.4.7-1.fc42 copr_base 149.2 KiB
python3-libs x86_64 3.13.1-2.fc42 copr_base 39.9 MiB
python3-matplotlib-data noarch 3.9.4-2.fc42 copr_base 741.5 KiB
python3-matplotlib-data-fonts noarch 3.9.4-2.fc42 copr_base 7.9 MiB
python3-matplotlib-tk x86_64 3.9.4-2.fc42 copr_base 256.4 KiB
python3-numpy x86_64 1:2.2.1-1.fc42 fedora 40.8 MiB
python3-numpy-f2py x86_64 1:2.2.1-1.fc42 fedora 2.0 MiB
python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB
python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB
python3-pillow x86_64 11.0.0-1.fc42 fedora 3.9 MiB
python3-pillow-tk x86_64 11.0.0-1.fc42 fedora 73.0 KiB
python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB
python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB
python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB
python3-six noarch 1.16.0-23.fc41 fedora 118.3 KiB
python3-tkinter x86_64 3.13.1-2.fc42 copr_base 1.9 MiB
rhash x86_64 1.4.5-1.fc42 copr_base 354.0 KiB
spirv-tools-libs x86_64 2024.3-4.fc42 fedora 5.4 MiB
tcl x86_64 1:8.6.15-6.fc42 fedora 4.2 MiB
tk x86_64 1:8.6.15-1.fc42 fedora 3.6 MiB
tzdata noarch 2024b-1.fc42 fedora 1.6 MiB
vim-filesystem noarch 2:9.1.919-1.fc42 fedora 40.0 B
xkbcomp x86_64 1.4.7-2.fc41 fedora 217.4 KiB
xkeyboard-config noarch 2.43-1.fc42 fedora 6.6 MiB
xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB
xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB
xorg-x11-server-common x86_64 21.1.15-1.fc42 fedora 127.1 KiB
xorg-x11-xauth x86_64 1:1.1.3-2.fc41 fedora 56.2 KiB
Transaction Summary:
Installing: 260 packages
Total size of inbound packages is 255 MiB. Need to download 61 MiB.
After this operation, 1 GiB extra will be used (install 1 GiB, remove 0 B).
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Warning: skipped OpenPGP checks for 124 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch
Complete!
Finish: build setup for smoldyn-2.72-5.fc42.src.rpm
Start: rpmbuild smoldyn-2.72-5.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721433600
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.EbY2Zg
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ test -d /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/rm -rf /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.FFZrwo
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ rm -rf Smoldyn-2.72
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.72.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd Smoldyn-2.72
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (smoldyn-fix_libpaths.patch):
+ echo 'Patch #0 (smoldyn-fix_libpaths.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0
patching file CMakeLists.txt
Patch #1 (smoldyn-freeglut.patch):
+ echo 'Patch #1 (smoldyn-freeglut.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 370 (offset 44 lines).
Patch #2 (smoldyn-create_soname.patch):
+ echo 'Patch #2 (smoldyn-create_soname.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 490 (offset 5 lines).
Hunk #2 succeeded at 522 (offset 52 lines).
Patch #3 (smoldyn-avoid_automatic_wheel.patch):
+ echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0
patching file source/python/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -3 lines).
+ rm -rf source/MSVClibs
+ rm -rf source/pybind11
+ rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake
+ rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen
+ rm -rf source/NextSubVolume/boost_include
+ rm -f 'source/vtk/*'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.c' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';'
+ sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
+ cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt
+ cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt
+ find -name '*.pyc' -delete
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.UBZhM2
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.72 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF
-- The CXX compiler identification is GNU 15.0.0
-- The C compiler identification is GNU 15.0.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: '2.72'
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: ON
-- Option to incude Python module: ON
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
-- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl'
-- Found OpenGL: /usr/lib64/libOpenGL.so
-- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so'
-- Found GLUT: /usr/lib64/libglut.so
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.7.0")
-- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so'
-- Found Zlib: '/usr/include', '/usr/lib64/libz.so'
-- Boost headers found: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include'
-- Found Python3: /usr/bin/python3.13 (found version "3.13.1") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- [TEST] Found 15 test scripts
-- Configuring done (1.9s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
+ /usr/bin/cmake --build redhat-linux-build -j2 --verbose
Change Dir: '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2
/usr/bin/cmake -S/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 -B/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build//CMakeFiles/progress.marks
/usr/bin/gmake -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
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gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
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gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o
[ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/StructuredGrid.cpp
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Geometry.c
[ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Species.cpp
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/List.c
[ 6%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/ReactionEquation.cpp
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/math2.c
[ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/opengl2.c
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.cpp
[ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/parse.c
[ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/queue.c
[ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.c
[ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Rn.c
[ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/RnSort.c
[ 17%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Kairos.cpp
[ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/rxnparam.c
[ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SimCommand.c
[ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Io.cpp
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/Geometry.cpp
[ 23%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Sphere.c
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cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -isystem /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/nsvc.cpp
[ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c: In function ‘strmatheval’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/string2.c:1415:9: warning: ‘strncpy’ specified bound 512 equals destination size [-Wstringop-truncation]
1415 | strncpy(expr,expression,STRCHAR);
| ^
[ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SurfaceParam.c
[ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/Zn.c
[ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT.c
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 29%] Built target Steve
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 29%] Built target nsv
/usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
/usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o
[ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
[ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
[ 35%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 37%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
[ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o
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/usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
[ 59%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/15/cstdio:47,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/15/cstdio:47,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 60%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 61%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
[ 62%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o
/usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 64%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 65%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o
/usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 66%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o
/usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
[ 67%] Linking CXX static library libsmoldyn_static.a
/usr/bin/cmake -P CMakeFiles/smoldyn_static.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_static.dir/link.txt --verbose=1
/usr/bin/ar qc libsmoldyn_static.a CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
/usr/bin/ranlib libsmoldyn_static.a
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 67%] Built target smoldyn_static
/usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 69%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c
[ 70%] Linking CXX shared library libsmoldyn_shared.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:14:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4066 [-Wformat-truncation=]
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:61: note: format string is defined here
1496 | CHECKS(er!=3,"Error reading BioNetGen file '%s'. Try again with '-v' flag for more information.",str1);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:8:
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1496:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 80 and 4175 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:30: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4080 [-Wformat-truncation=]
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:47: note: format string is defined here
1495 | CHECKS(er!=2,"BioNetGen file '%s' not found",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1495:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:31: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4087 [-Wformat-truncation=]
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:41: note: format string is defined here
1450 | CHECKS(er!=-2,"invalid '%s' monomer name",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1450:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:36: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4075 [-Wformat-truncation=]
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:58: note: format string is defined here
1442 | CHECKS(!er,"error adding monomer %s",str1); }}
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1442:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:54: note: format string is defined here
1441 | CHECKS(er!=-2,"monomer name '%s' is not permitted",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1441:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c: In function ‘bngreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:39: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4067 [-Wformat-truncation=]
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:69: note: format string is defined here
1440 | CHECKS(er!=-1,"out of memory adding monomer %s",str1);
| ^~
In function ‘snprintf’,
inlined from ‘bngreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolbng.c:1440:4:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 30 and 4125 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/random2.h:17,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
[ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcmd.c
[ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:18:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c: In function ‘compartreadstring’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:29: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 4082 [-Wformat-truncation=]
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:44: note: format string is defined here
894 | CHECKS(s>=0,"surface name '%s' not recognized",nm);
| ^~
In file included from /usr/include/stdio.h:970,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:9:
In function ‘snprintf’,
inlined from ‘compartreadstring’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolcomparts.c:894:3:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output between 31 and 4126 bytes into a destination of size 4096
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolfilament.c
[ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolgraphics.c
[ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolmolec.c
[ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolport.c
[ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smollattice.c
[ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolreact.c
[ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolrule.c
[ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:27:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp: In function ‘simParseError’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:58: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 603 and 4698 [-Wformat-overflow=]
166 | sprintf(ErrorLineAndString,"%s\nMessage: %s",parseerrstr,ErrorString);
| ^~ ~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/15/cstdio:47,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:12:
In function ‘sprintf’,
inlined from ‘simParseError’ at /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsim.cpp:166:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 8201 bytes into a destination of size 4708
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
[ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolsurface.c
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
[ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolwall.c
[ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/usr/include/python3.13 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,--dependency-file=CMakeFiles/smoldyn_shared.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.72 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
/usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.72 libsmoldyn_shared.so.2 libsmoldyn_shared.so
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 87%] Built target smoldyn_shared
/usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o
/usr/bin/g++ -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.cpp
[ 90%] Linking CXX executable smoldyn
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=CMakeFiles/smoldyn.dir/link.d CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.72 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 90%] Built target smoldyn
In file included from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/libsmoldyn.cpp:15:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::func_’ [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::target_’ [-Wattributes]
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: ‘CallbackFunc’ declared with greater visibility than the type of its field ‘CallbackFunc::args_’ [-Wattributes]
[ 91%] Linking CXX static library lib_pysmoldyn.a
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1
/usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
/usr/bin/ranlib lib_pysmoldyn.a
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 91%] Built target _pysmoldyn
/usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o
[ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/CallbackFunc.cpp
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/Command.cpp
[ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/Simulation.cpp
[ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build -I/usr/include/GL -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume -I/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/external/pybind11/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.72 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/module.cpp
[ 97%] Linking CXX shared module /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1045:16: warning: type ‘struct simstruct’ violates the C++ One Definition Rule [-Wodr]
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a different type is defined in another translation unit
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/../Smoldyn/smoldyn.h:1106:19: note: the first difference of corresponding definitions is field ‘callbacks’
1106 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback.
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:1045:16: note: a type with different number of fields is defined in another translation unit
1045 | typedef struct simstruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: warning: type ‘struct latticestruct’ violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field ‘nsv’
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smoldyn.h:714:16: note: type name ‘NextSubvolumeMethod’ should match type name ‘Kairos::NextSubvolumeMethod’
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c: In function ‘boxesupdatelists’:
/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,--dependency-file=CMakeFiles/_smoldyn.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/strip /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 97%] Built target _smoldyn
/usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
/usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72 /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/gmake -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[ 98%] Copying python source tree to binary directory
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/python/smoldyn /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn
[100%] Generating wheel in /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
cd /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py && /usr/bin/python3.13 setup.py bdist_wheel -d /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[100%] Built target copy_python_tree
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-313
creating build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-313/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-313/smoldyn
creating build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-313/smoldyn
running build_ext
/usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
Follow the current Python packaging guidelines when building
Python RPM packages.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
********************************************************************************
!!
self.initialize_options()
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/./smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/./smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/./smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/./smoldyn
copying build/lib.linux-x86_64-cpython-313/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/./smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/./smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-313/smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./smoldyn
running install_egg_info
running egg_info
creating smoldyn.egg-info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/./smoldyn-2.72-py3.13.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.72.dist-info/WHEEL
creating '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/smoldyn-2.72-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-313-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.72.dist-info/METADATA'
adding 'smoldyn-2.72.dist-info/WHEEL'
adding 'smoldyn-2.72.dist-info/top_level.txt'
adding 'smoldyn-2.72.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
gmake[2]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
[100%] Built target wheel
gmake[1]: Leaving directory '/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CMakeFiles 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.cAZSsE
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ '[' /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
++ dirname /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/smoldyn-2.72-build
+ mkdir /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ DESTDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
+ /usr/bin/cmake --install redhat-linux-build
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/bin/smoldyn
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2.72
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so.2
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_shared.so
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/libsmoldyn.h
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldyn.h
-- Installing: /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/include/smoldyn/smoldynconfigure.h
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ pushd redhat-linux-build/py
+ mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ cp -a smoldyn smoldyn.egg-info /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/
+ popd
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.72-5.fc42 --unique-debug-suffix -2.72-5.fc42.x86_64 --unique-debug-src-base smoldyn-2.72-5.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.72-5.fc42.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13 using python3.13
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/__main__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/_version.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/libsmoldyn_static.a: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/combine.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/biosimulators/__pycache__/data_model.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/__main__.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/types.cpython-313.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents
/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages/smoldyn/__pycache__/smoldyn.cpython-313.pyc: replacing with normalized version
Scanned 31 directories and 119 files,
processed 14 inodes,
14 modified (5 replaced + 9 rewritten),
0 unsupported format, 0 errors
Reading /builddir/build/BUILD/smoldyn-2.72-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.g529pz
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build ~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.72
+ pushd redhat-linux-build
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64
+ export PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/lib64/python3.13/site-packages
+ xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:429 Here: 429
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:713 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:441 Here: 441
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:3101 * Read custom CTest configuration directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:3106 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.cmake
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:3126 * Check for file: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/CTestCustom.ctest
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:713 UpdateCTestConfiguration from :/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:411 Test project /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:1819 Constructing a list of tests
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_actions
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_api
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_biosimulators
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_concurrent_simulation
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_connect_func
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_connect_var
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_data_in_array
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_data_outputfile
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_getters
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_issue_118
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_libsmoldyn
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_multiple_iterations
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_prd_placement
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_sanity
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2520 Add test: test_sim_from_file
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:2563 Set test directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/source/python
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:1885 Done constructing a list of tests
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:1032 Updating test list for fixtures
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:1255 Added 0 tests to meet fixture requirements
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestMultiProcessHandler.cxx:1519 Checking test dependency graph...
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestMultiProcessHandler.cxx:1548 Checking test dependency graph end
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 2
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:550 Start 2: test_api
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:711
2: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_api.py"
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:719 2: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:727 2: Environment variables:
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 2: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 2: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:831 2: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1010 1/3 Test #2: test_api .........................
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_api ...
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.29 sec
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 3
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:550 Start 3: test_biosimulators
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:711
3: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_biosimulators.py"
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:719 3: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:727 3: Environment variables:
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 3: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 3: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:831 3: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 3: ssssssssssssssssssssssss
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 3: ----------------------------------------------------------------------
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 3: Ran 24 tests in 0.000s
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 3:
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 3: OK (skipped=24)
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1010 2/3 Test #3: test_biosimulators ...............
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_biosimulators ...
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.32 sec
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestMultiProcessHandler.cxx:219 test 14
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:550 Start 14: test_sanity
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:711
14: Test command: /usr/bin/python3.13 "/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests/test_sanity.py"
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:719 14: Working Directory: /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/tests
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:727 14: Environment variables:
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 14: PYTHONPATH=/builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:732 14: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:831 14: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 14: Using smoldyn from /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/redhat-linux-build/py/smoldyn/__init__.py
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 14: test_newcursim
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 14: <smoldyn._smoldyn.simstruct object at 0x7fb62bc40a30>
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 14: Testing test_get_err
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:43 14: (<ErrorCode.ok: 0>, '')
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1010 3/3 Test #14: test_sanity ......................
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:1013 Testing test_sanity ...
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestRunTest.cxx:272 Passed 0.27 sec
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/cmCTest.cxx:314 Current_Time: Dec 23 12:14 UTC
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:450
The following tests passed:
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:455 test_api
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:455 test_biosimulators
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:455 test_sanity
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:636
100% tests passed, 0 tests failed out of 3
/builddir/build/BUILD/cmake-3.31.2-build/cmake-3.31.2/Source/CTest/cmCTestTestHandler.cxx:652
Total Test time (real) = 0.88 sec
~/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72
+ popd
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: smoldyn-2.72-5.fc42.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.q2M8j2
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.72-5.fc42 smoldyn(x86-64) = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-doc-2.72-5.fc42.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8mYene
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ DOCDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/BioNetGen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/CMakeLists.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Doxyfile.in /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/README.md /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolCrowd /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/SmolEmulate /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/Smoldyn /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/_static /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/build_doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/conf.py /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/doxygen /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/examples /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/index.rst /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/libSteve /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/python /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/requirements.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/tikz /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/user /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/docs/wrl2smol /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/doc/smoldyn-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: smoldyn-doc = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-libs-2.72-5.fc42.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.cNue90
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/smoldyn-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.72-5.fc42 smoldyn-libs(x86-64) = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-libs-devel-2.72-5.fc42.x86_64
Provides: smoldyn-libs-devel = 2.72-5.fc42 smoldyn-libs-devel(x86-64) = 2.72-5.fc42 smoldyn-libs-static = 0:2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsmoldyn_shared.so.2()(64bit)
Processing files: python3-smoldyn-2.72-5.fc42.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.pMt6zw
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ cd Smoldyn-2.72
+ LICENSEDIR=/builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/License.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/smoldyn-2.72-build/Smoldyn-2.72/LICENSE /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT/usr/share/licenses/python3-smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-smoldyn = 2.72-5.fc42 python3-smoldyn = 2.72-5.fc42 python3-smoldyn(x86-64) = 2.72-5.fc42 python3.13-smoldyn = 2.72-5.fc42 python3.13dist(smoldyn) = 2.72 python3dist(smoldyn) = 2.72
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) python(abi) = 3.13 rtld(GNU_HASH)
Obsoletes: python-smoldyn < 2.72-5.fc42
Processing files: smoldyn-debugsource-2.72-5.fc42.x86_64
Provides: smoldyn-debugsource = 2.72-5.fc42 smoldyn-debugsource(x86-64) = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-debuginfo-2.72-5.fc42.x86_64
Provides: debuginfo(build-id) = 6dd1beabe1dbcff1af68d33bc72f317a336c24ab smoldyn-debuginfo = 2.72-5.fc42 smoldyn-debuginfo(x86-64) = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.72-5.fc42
Processing files: smoldyn-libs-debuginfo-2.72-5.fc42.x86_64
Provides: debuginfo(build-id) = e1310c6821a5bd459572806945da90171e6d06e9 libsmoldyn_shared.so.2.72-2.72-5.fc42.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.72-5.fc42 smoldyn-libs-debuginfo(x86-64) = 2.72-5.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.72-5.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/smoldyn-2.72-build/BUILDROOT
Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-smoldyn-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-2.72-5.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-doc-2.72-5.fc42.noarch.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.JM6BKS
+ umask 022
+ cd /builddir/build/BUILD/smoldyn-2.72-build
+ test -d /builddir/build/BUILD/smoldyn-2.72-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/smoldyn-2.72-build
+ rm -rf /builddir/build/BUILD/smoldyn-2.72-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild smoldyn-2.72-5.fc42.src.rpm
Finish: build phase for smoldyn-2.72-5.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1734955923.319866/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.72-5.fc42.src.rpm) Config(child) 2 minutes 20 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "smoldyn-debuginfo",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "python3-smoldyn",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn-libs-devel",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn-doc",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "noarch"
},
{
"name": "smoldyn-debugsource",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn-libs",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn-libs-debuginfo",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "x86_64"
},
{
"name": "smoldyn",
"epoch": null,
"version": "2.72",
"release": "5.fc42",
"arch": "src"
}
]
}
RPMResults finished