Warning: Permanently added '54.160.176.18' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8411327-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.2 PID: 10120 Logging PID: 10121 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8411327, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7e5340c2a323fb781103cc9a4ea7bd63a25b8dec', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/ProDy', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'ProDy', 'package_version': '2.4.1-5', 'project_dirname': 'gcc-15-smoketest-3', 'project_name': 'gcc-15-smoketest-3', 'project_owner': 'dmalcolm', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch', 'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch', 'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}], 'sandbox': 'dmalcolm/gcc-15-smoketest-3--dmalcolm', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'dmalcolm', 'tags': [], 'task_id': '8411327-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/ProDy /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/ProDy', '/var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy'... Running: git checkout 7e5340c2a323fb781103cc9a4ea7bd63a25b8dec -- cmd: ['git', 'checkout', '7e5340c2a323fb781103cc9a4ea7bd63a25b8dec', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy rc: 0 stdout: stderr: Note: switching to '7e5340c2a323fb781103cc9a4ea7bd63a25b8dec'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7e5340c automatic import of ProDy Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading ProDy-2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o ProDy-2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3/ProDy/ProDy-2.4.1.tar.gz/md5/ed3fa7549c21d8c68ed832b970952fe4/ProDy-2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 25.9M 100 25.9M 0 0 17.0M 0 0:00:01 0:00:01 --:--:-- 17.0M INFO: Reading stdout from command: md5sum ProDy-2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734539813.403672 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy/ProDy.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734539813.403672 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy/ProDy.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734539813.403672/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734539813.403672/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/8f8b70aff0d799367f458aabb0bdb3da39c30b95dc6269fc0d81ea36e054969a/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/8f8b70aff0d799367f458aabb0bdb3da39c30b95dc6269fc0d81ea36e054969a/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 dnf5-5.2.8.1-2.fc42.aarch64 dnf5-plugins-5.2.8.1-2.fc42.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 36.8 MiB/s | 20.9 MiB | 00m01s Copr repository 100% | 4.1 MiB/s | 165.3 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 76.5 KiB/s | 15.9 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 aarch64 1.0.8-19.fc41 fedora 427.6 KiB coreutils aarch64 9.5-11.fc42 fedora 8.1 MiB cpio aarch64 2.15-2.fc41 fedora 1.2 MiB diffutils aarch64 3.10-8.fc41 fedora 2.1 MiB fedora-release-common noarch 42-0.11 fedora 19.8 KiB findutils aarch64 1:4.10.0-4.fc41 fedora 2.1 MiB gawk aarch64 5.3.0-4.fc41 fedora 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-24.fc42 fedora 0.0 B grep aarch64 3.11-9.fc41 fedora 1.1 MiB gzip aarch64 1.13-2.fc41 fedora 488.9 KiB info aarch64 7.1.1-2.fc42 fedora 613.6 KiB patch aarch64 2.7.6-25.fc41 fedora 390.6 KiB redhat-rpm-config noarch 300-1.no_annobin.0.fc42 copr_base 186.6 KiB rpm-build aarch64 4.20.0-1.fc42 fedora 1.4 MiB sed aarch64 4.9-3.fc41 fedora 1.0 MiB shadow-utils aarch64 2:4.17.0~rc1-1.fc42 fedora 4.5 MiB tar aarch64 2:1.35-4.fc41 fedora 3.1 MiB unzip aarch64 6.0-65.fc42 fedora 2.3 MiB util-linux aarch64 2.40.2-8.fc42 fedora 16.9 MiB which aarch64 2.21-42.fc41 fedora 248.2 KiB xz aarch64 1:5.6.3-2.fc42 fedora 1.5 MiB Installing dependencies: add-determinism aarch64 0.4.3-1.fc42 fedora 2.1 MiB alternatives aarch64 1.30-1.fc41 fedora 218.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs aarch64 4.0.2-1.fc41 fedora 547.4 KiB authselect aarch64 1.5.0-8.fc42 fedora 309.5 KiB authselect-libs aarch64 1.5.0-8.fc42 fedora 931.9 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils aarch64 2.43.50-9.fc42 fedora 29.4 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 fedora 735.0 B bzip2-libs aarch64 1.0.8-19.fc41 fedora 200.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-3.fc42 fedora 2.6 MiB coreutils-common aarch64 9.5-11.fc42 fedora 11.2 MiB cracklib aarch64 2.9.11-6.fc41 fedora 935.0 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl aarch64 8.11.1-2.fc42 fedora 452.0 KiB cyrus-sasl-lib aarch64 2.1.28-27.fc41 fedora 3.1 MiB debugedit aarch64 5.1-2.fc42 fedora 244.2 KiB dwz aarch64 0.15-8.fc42 fedora 386.8 KiB ed aarch64 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils aarch64 0.192-7.fc42 fedora 3.1 MiB elfutils-debuginfod-client aarch64 0.192-7.fc42 fedora 141.3 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 fedora 1.8 KiB elfutils-libelf aarch64 0.192-7.fc42 fedora 1.2 MiB elfutils-libs aarch64 0.192-7.fc42 fedora 734.9 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.11 fedora 0.0 B fedora-release-identity-basic noarch 42-0.11 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file aarch64 5.45-8.fc42 fedora 139.5 KiB file-libs aarch64 5.45-8.fc42 fedora 10.0 MiB filesystem aarch64 3.18-29.fc42 fedora 106.0 B filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal aarch64 15.2-4.fc42 fedora 12.7 MiB gdbm aarch64 1:1.23-7.fc41 fedora 928.5 KiB gdbm-libs aarch64 1:1.23-7.fc41 fedora 426.0 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc aarch64 2.40.9000-24.fc42 fedora 6.2 MiB glibc-common aarch64 2.40.9000-24.fc42 fedora 1.3 MiB glibc-gconv-extra aarch64 2.40.9000-24.fc42 fedora 18.3 MiB gmp aarch64 1:6.3.0-2.fc41 fedora 722.0 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson aarch64 2.14-1.fc42 fedora 221.3 KiB json-c aarch64 0.18-1.fc42 fedora 139.2 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs aarch64 1.6.3-4.fc41 fedora 226.4 KiB krb5-libs aarch64 1.21.3-3.fc42 fedora 2.6 MiB libacl aarch64 2.3.2-2.fc41 fedora 196.1 KiB libarchive aarch64 3.7.7-1.fc42 fedora 912.2 KiB libattr aarch64 2.5.2-4.fc41 fedora 196.6 KiB libblkid aarch64 2.40.2-8.fc42 fedora 418.6 KiB libbrotli aarch64 1.1.0-5.fc41 fedora 1.1 MiB libcap aarch64 2.71-1.fc42 fedora 509.8 KiB libcap-ng aarch64 0.8.5-3.fc41 fedora 417.2 KiB libcom_err aarch64 1.47.1-6.fc42 fedora 239.3 KiB libcurl aarch64 8.11.1-2.fc42 fedora 845.2 KiB libeconf aarch64 0.7.5-1.fc42 fedora 78.7 KiB libevent aarch64 2.1.12-14.fc41 fedora 1.5 MiB libfdisk aarch64 2.40.2-8.fc42 fedora 482.9 KiB libffi aarch64 3.4.6-3.fc42 fedora 282.4 KiB libgcc aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 218.8 KiB libgomp aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 501.0 KiB libidn2 aarch64 2.3.7-2.fc41 fedora 457.2 KiB libmount aarch64 2.40.2-8.fc42 fedora 483.9 KiB libnghttp2 aarch64 1.64.0-1.fc42 fedora 262.2 KiB libnsl2 aarch64 2.0.1-2.fc41 fedora 222.0 KiB libpkgconf aarch64 2.3.0-1.fc42 fedora 198.1 KiB libpsl aarch64 0.21.5-4.fc41 fedora 196.6 KiB libpwquality aarch64 1.4.5-11.fc41 fedora 1.1 MiB libselinux aarch64 3.8-0.rc1.2.fc42 fedora 195.6 KiB libsemanage aarch64 3.8-0.rc1.1.fc42 fedora 353.3 KiB libsepol aarch64 3.8-0.rc1.1.fc42 fedora 809.9 KiB libsmartcols aarch64 2.40.2-8.fc42 fedora 288.5 KiB libssh aarch64 0.11.1-1.fc42 fedora 649.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 2.7 MiB libtasn1 aarch64 4.19.0-9.fc41 fedora 283.8 KiB libtirpc aarch64 1.3.6-1.fc42 fedora 212.9 KiB libtool-ltdl aarch64 2.5.4-1.fc42 copr_base 92.1 KiB libunistring aarch64 1.1-8.fc41 fedora 1.8 MiB libuuid aarch64 2.40.2-8.fc42 fedora 197.5 KiB libverto aarch64 0.3.2-9.fc41 fedora 197.5 KiB libxcrypt aarch64 4.4.36-11.fc42 fedora 271.5 KiB libxml2 aarch64 2.12.8-2.fc41 fedora 2.1 MiB libzstd aarch64 1.5.6-2.fc41 fedora 796.0 KiB lua-libs aarch64 5.4.7-1.fc42 fedora 393.1 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs aarch64 1.10.0-1.fc41 fedora 261.6 KiB mpfr aarch64 4.2.1-5.fc41 fedora 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 fedora 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap aarch64 2.6.8-6.fc42 fedora 747.0 KiB openssl-libs aarch64 1:3.2.2-8.fc42 fedora 7.2 MiB p11-kit aarch64 0.25.5-4.fc42 fedora 2.6 MiB p11-kit-trust aarch64 0.25.5-4.fc42 fedora 655.7 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam aarch64 1.7.0-3.fc42 fedora 4.3 MiB pam-libs aarch64 1.7.0-3.fc42 fedora 223.4 KiB pcre2 aarch64 10.44-1.fc41.1 fedora 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf aarch64 2.3.0-1.fc42 fedora 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 fedora 990.0 B popt aarch64 1.19-7.fc41 fedora 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 fedora 456.0 B readline aarch64 8.2-11.fc42 fedora 753.3 KiB rpm aarch64 4.20.0-1.fc42 fedora 3.9 MiB rpm-build-libs aarch64 4.20.0-1.fc42 fedora 262.7 KiB rpm-libs aarch64 4.20.0-1.fc42 fedora 797.9 KiB rpm-sequoia aarch64 1.7.0-3.fc42 fedora 2.2 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs aarch64 3.47.2-1.fc42 fedora 1.4 MiB systemd-libs aarch64 257-1.fc42 fedora 2.4 MiB util-linux-core aarch64 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs aarch64 0.8.2-4.fc42 fedora 212.3 KiB xz-libs aarch64 1:5.6.3-2.fc42 fedora 266.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip aarch64 3.0-42.fc42 fedora 755.7 KiB zlib-ng-compat aarch64 2.2.2-1.fc42 fedora 133.8 KiB zstd aarch64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 155 packages Total size of inbound packages is 51 MiB. Need to download 51 MiB. After this operation, 237 MiB extra will be used (install 237 MiB, remove 0 B). [ 1/155] bzip2-0:1.0.8-19.fc41.aarch64 100% | 3.9 MiB/s | 52.4 KiB | 00m00s [ 2/155] cpio-0:2.15-2.fc41.aarch64 100% | 56.9 MiB/s | 291.3 KiB | 00m00s [ 3/155] coreutils-0:9.5-11.fc42.aarch 100% | 50.5 MiB/s | 1.1 MiB | 00m00s [ 4/155] bash-0:5.2.37-1.fc42.aarch64 100% | 68.9 MiB/s | 1.8 MiB | 00m00s [ 5/155] fedora-release-common-0:42-0. 100% | 5.8 MiB/s | 23.9 KiB | 00m00s [ 6/155] diffutils-0:3.10-8.fc41.aarch 100% | 56.2 MiB/s | 402.9 KiB | 00m00s [ 7/155] findutils-1:4.10.0-4.fc41.aar 100% | 108.2 MiB/s | 554.1 KiB | 00m00s [ 8/155] glibc-minimal-langpack-0:2.40 100% | 29.8 MiB/s | 121.9 KiB | 00m00s [ 9/155] gawk-0:5.3.0-4.fc41.aarch64 100% | 151.1 MiB/s | 1.1 MiB | 00m00s [ 10/155] grep-0:3.11-9.fc41.aarch64 100% | 72.7 MiB/s | 297.9 KiB | 00m00s [ 11/155] gzip-0:1.13-2.fc41.aarch64 100% | 41.3 MiB/s | 169.1 KiB | 00m00s [ 12/155] info-0:7.1.1-2.fc42.aarch64 100% | 59.0 MiB/s | 181.3 KiB | 00m00s [ 13/155] patch-0:2.7.6-25.fc41.aarch64 100% | 41.9 MiB/s | 128.8 KiB | 00m00s [ 14/155] rpm-build-0:4.20.0-1.fc42.aar 100% | 27.4 MiB/s | 84.1 KiB | 00m00s [ 15/155] sed-0:4.9-3.fc41.aarch64 100% | 102.7 MiB/s | 315.4 KiB | 00m00s [ 16/155] tar-2:1.35-4.fc41.aarch64 100% | 139.1 MiB/s | 854.7 KiB | 00m00s [ 17/155] shadow-utils-2:4.17.0~rc1-1.f 100% | 142.3 MiB/s | 1.3 MiB | 00m00s [ 18/155] unzip-0:6.0-65.fc42.aarch64 100% | 25.9 MiB/s | 185.5 KiB | 00m00s [ 19/155] which-0:2.21-42.fc41.aarch64 100% | 20.2 MiB/s | 41.5 KiB | 00m00s [ 20/155] util-linux-0:2.40.2-8.fc42.aa 100% | 167.5 MiB/s | 1.2 MiB | 00m00s [ 21/155] xz-1:5.6.3-2.fc42.aarch64 100% | 77.5 MiB/s | 476.1 KiB | 00m00s [ 22/155] filesystem-0:3.18-29.fc42.aar 100% | 155.3 MiB/s | 1.1 MiB | 00m00s [ 23/155] redhat-rpm-config-0:300-1.no_ 100% | 6.8 MiB/s | 76.6 KiB | 00m00s [ 24/155] glibc-0:2.40.9000-24.fc42.aar 100% | 181.7 MiB/s | 1.8 MiB | 00m00s [ 25/155] ncurses-libs-0:6.5-2.20240629 100% | 63.8 MiB/s | 326.5 KiB | 00m00s [ 26/155] bzip2-libs-0:1.0.8-19.fc41.aa 100% | 10.4 MiB/s | 42.7 KiB | 00m00s [ 27/155] libacl-0:2.3.2-2.fc41.aarch64 100% | 12.2 MiB/s | 24.9 KiB | 00m00s [ 28/155] gmp-1:6.3.0-2.fc41.aarch64 100% | 87.9 MiB/s | 270.1 KiB | 00m00s [ 29/155] libattr-0:2.5.2-4.fc41.aarch6 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [ 30/155] coreutils-common-0:9.5-11.fc4 100% | 212.2 MiB/s | 2.1 MiB | 00m00s [ 31/155] libcap-0:2.71-1.fc42.aarch64 100% | 14.1 MiB/s | 86.8 KiB | 00m00s [ 32/155] libselinux-0:3.8-0.rc1.2.fc42 100% | 14.7 MiB/s | 90.4 KiB | 00m00s [ 33/155] fedora-repos-0:42-0.3.noarch 100% | 9.0 MiB/s | 9.2 KiB | 00m00s [ 34/155] systemd-libs-0:257-1.fc42.aar 100% | 122.0 MiB/s | 749.6 KiB | 00m00s [ 35/155] mpfr-0:4.2.1-5.fc41.aarch64 100% | 45.3 MiB/s | 324.8 KiB | 00m00s [ 36/155] openssl-libs-1:3.2.2-8.fc42.a 100% | 168.3 MiB/s | 2.2 MiB | 00m00s [ 37/155] readline-0:8.2-11.fc42.aarch6 100% | 29.7 MiB/s | 212.7 KiB | 00m00s [ 38/155] glibc-common-0:2.40.9000-24.f 100% | 75.2 MiB/s | 385.0 KiB | 00m00s [ 39/155] pcre2-0:10.44-1.fc41.1.aarch6 100% | 55.4 MiB/s | 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libuuid-0:2.40.2-8.fc42.aarch 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 66/155] pam-0:1.7.0-3.fc42.aarch64 100% | 136.6 MiB/s | 559.4 KiB | 00m00s [ 67/155] zlib-ng-compat-0:2.2.2-1.fc42 100% | 21.4 MiB/s | 65.7 KiB | 00m00s [ 68/155] util-linux-core-0:2.40.2-8.fc 100% | 103.9 MiB/s | 532.1 KiB | 00m00s [ 69/155] ansible-srpm-macros-0:1-16.fc 100% | 10.1 MiB/s | 20.8 KiB | 00m00s [ 70/155] xz-libs-1:5.6.3-2.fc42.aarch6 100% | 36.2 MiB/s | 111.1 KiB | 00m00s [ 71/155] build-reproducibility-srpm-ma 100% | 5.5 MiB/s | 11.2 KiB | 00m00s [ 72/155] dwz-0:0.15-8.fc42.aarch64 100% | 44.7 MiB/s | 137.3 KiB | 00m00s [ 73/155] efi-srpm-macros-0:5-13.fc42.n 100% | 11.0 MiB/s | 22.5 KiB | 00m00s [ 74/155] filesystem-srpm-macros-0:3.18 100% | 11.7 MiB/s | 23.9 KiB | 00m00s [ 75/155] fpc-srpm-macros-0:1.3-13.fc41 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 76/155] forge-srpm-macros-0:0.4.0-1.f 100% | 9.6 MiB/s | 19.8 KiB | 00m00s [ 77/155] fonts-srpm-macros-1:2.0.5-17. 100% | 8.8 MiB/s | 27.0 KiB | 00m00s [ 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rust-srpm-macros-0:26.3-3.fc4 100% | 5.9 MiB/s | 12.1 KiB | 00m00s [ 92/155] zig-srpm-macros-0:1-3.fc41.no 100% | 4.0 MiB/s | 8.1 KiB | 00m00s [ 93/155] zip-0:3.0-42.fc42.aarch64 100% | 83.0 MiB/s | 255.1 KiB | 00m00s [ 94/155] basesystem-0:11-21.fc41.noarc 100% | 3.6 MiB/s | 7.4 KiB | 00m00s [ 95/155] ncurses-base-0:6.5-2.20240629 100% | 28.8 MiB/s | 88.4 KiB | 00m00s [ 96/155] libsepol-0:3.8-0.rc1.1.fc42.a 100% | 80.4 MiB/s | 329.4 KiB | 00m00s [ 97/155] glibc-gconv-extra-0:2.40.9000 100% | 173.3 MiB/s | 1.6 MiB | 00m00s [ 98/155] crypto-policies-0:20241128-1. 100% | 24.0 MiB/s | 98.4 KiB | 00m00s [ 99/155] ca-certificates-0:2024.2.69_v 100% | 115.3 MiB/s | 944.5 KiB | 00m00s [100/155] fedora-gpg-keys-0:42-0.3.noar 100% | 21.7 MiB/s | 133.6 KiB | 00m00s [101/155] fedora-repos-rawhide-0:42-0.3 100% | 2.1 MiB/s | 8.8 KiB | 00m00s [102/155] alternatives-0:1.30-1.fc41.aa 100% | 20.3 MiB/s | 41.5 KiB | 00m00s [103/155] pcre2-syntax-0:10.44-1.fc41.1 100% | 48.8 MiB/s | 149.9 KiB | 00m00s 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100% | 18.8 MiB/s | 38.4 KiB | 00m00s [130/155] cracklib-0:2.9.11-6.fc41.aarc 100% | 45.2 MiB/s | 92.6 KiB | 00m00s [131/155] libcom_err-0:1.47.1-6.fc42.aa 100% | 13.1 MiB/s | 26.9 KiB | 00m00s [132/155] krb5-libs-0:1.21.3-3.fc42.aar 100% | 149.5 MiB/s | 765.5 KiB | 00m00s [133/155] keyutils-libs-0:1.6.3-4.fc41. 100% | 15.6 MiB/s | 31.9 KiB | 00m00s [134/155] libtasn1-0:4.19.0-9.fc41.aarc 100% | 17.8 MiB/s | 73.0 KiB | 00m00s [135/155] libverto-0:0.3.2-9.fc41.aarch 100% | 20.5 MiB/s | 20.9 KiB | 00m00s [136/155] libgcc-0:15.0.0-0.2.fc42.aarc 100% | 955.5 KiB/s | 89.8 KiB | 00m00s [137/155] fedora-release-0:42-0.11.noar 100% | 12.7 MiB/s | 13.0 KiB | 00m00s [138/155] gdb-minimal-0:15.2-4.fc42.aar 100% | 243.4 MiB/s | 3.9 MiB | 00m00s [139/155] xxhash-libs-0:0.8.2-4.fc42.aa 100% | 16.9 MiB/s | 34.6 KiB | 00m00s [140/155] fedora-release-identity-basic 100% | 6.7 MiB/s | 13.8 KiB | 00m00s [141/155] libcurl-0:8.11.1-2.fc42.aarch 100% | 114.3 MiB/s | 351.2 KiB | 00m00s [142/155] libbrotli-0:1.1.0-5.fc41.aarc 100% | 56.3 MiB/s | 346.2 KiB | 00m00s [143/155] libidn2-0:2.3.7-2.fc41.aarch6 100% | 38.7 MiB/s | 118.8 KiB | 00m00s [144/155] libnghttp2-0:1.64.0-1.fc42.aa 100% | 18.7 MiB/s | 76.8 KiB | 00m00s [145/155] libpsl-0:0.21.5-4.fc41.aarch6 100% | 31.5 MiB/s | 64.4 KiB | 00m00s [146/155] libssh-0:0.11.1-1.fc42.aarch6 100% | 75.9 MiB/s | 233.0 KiB | 00m00s [147/155] openldap-0:2.6.8-6.fc42.aarch 100% | 77.8 MiB/s | 239.0 KiB | 00m00s [148/155] libgomp-0:15.0.0-0.2.fc42.aar 100% | 2.1 MiB/s | 322.1 KiB | 00m00s [149/155] libunistring-0:1.1-8.fc41.aar 100% | 131.8 MiB/s | 539.8 KiB | 00m00s [150/155] publicsuffix-list-dafsa-0:202 100% | 28.5 MiB/s | 58.3 KiB | 00m00s [151/155] libssh-config-0:0.11.1-1.fc42 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [152/155] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 152.4 MiB/s | 780.2 KiB | 00m00s [153/155] libevent-0:2.1.12-14.fc41.aar 100% | 62.1 MiB/s | 254.6 KiB | 00m00s [154/155] libtool-ltdl-0:2.5.4-1.fc42.a 100% | 16.7 MiB/s | 34.3 KiB | 00m00s [155/155] libstdc++-0:15.0.0-0.2.fc42.a 100% | 3.7 MiB/s | 760.1 KiB | 00m00s -------------------------------------------------------------------------------- [155/155] Total 100% | 71.0 MiB/s | 51.1 MiB | 00m01s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/157] Verify package files 100% | 741.0 B/s | 155.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.aarch64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.aarch64 >>> [RPM] /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root/var/cache/ [ 2/157] Prepare transaction 100% | 2.5 KiB/s | 155.0 B | 00m00s [ 3/157] Installing libgcc-0:15.0.0-0. 100% | 215.4 MiB/s | 220.5 KiB | 00m00s [ 4/157] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/157] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 6/157] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/157] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 8/157] Installing fedora-gpg-keys-0: 100% | 33.6 MiB/s | 172.2 KiB | 00m00s [ 9/157] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/157] Installing fedora-release-com 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [ 11/157] Installing 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376.2 MiB/s | 18.4 MiB | 00m00s [ 24/157] Installing zlib-ng-compat-0:2 100% | 131.5 MiB/s | 134.6 KiB | 00m00s [ 25/157] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB | 00m00s [ 26/157] Installing xz-libs-1:5.6.3-2. 100% | 261.2 MiB/s | 267.5 KiB | 00m00s [ 27/157] Installing readline-0:8.2-11. 100% | 245.9 MiB/s | 755.5 KiB | 00m00s [ 28/157] Installing popt-0:1.19-7.fc41 100% | 91.0 MiB/s | 279.5 KiB | 00m00s [ 29/157] Installing libuuid-0:2.40.2-8 100% | 194.0 MiB/s | 198.6 KiB | 00m00s [ 30/157] Installing libblkid-0:2.40.2- 100% | 409.9 MiB/s | 419.7 KiB | 00m00s [ 31/157] Installing gmp-1:6.3.0-2.fc41 100% | 235.8 MiB/s | 724.2 KiB | 00m00s [ 32/157] Installing libattr-0:2.5.2-4. 100% | 192.9 MiB/s | 197.5 KiB | 00m00s [ 33/157] Installing libacl-0:2.3.2-2.f 100% | 192.3 MiB/s | 196.9 KiB | 00m00s [ 34/157] Installing libxcrypt-0:4.4.36 100% | 133.9 MiB/s | 274.2 KiB | 00m00s [ 35/157] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.3 KiB | 00m00s [ 36/157] 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Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.aarch64 alternatives-1.30-1.fc41.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-8.fc42.aarch64 authselect-libs-1.5.0-8.fc42.aarch64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.aarch64 binutils-2.43.50-9.fc42.aarch64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch coreutils-9.5-11.fc42.aarch64 coreutils-common-9.5-11.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc41.aarch64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.1-2.fc42.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-8.fc42.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.aarch64 elfutils-debuginfod-client-0.192-7.fc42.aarch64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.aarch64 elfutils-libs-0.192-7.fc42.aarch64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.aarch64 file-libs-5.45-8.fc42.aarch64 filesystem-3.18-29.fc42.aarch64 filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.2-4.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-24.fc42.aarch64 glibc-common-2.40.9000-24.fc42.aarch64 glibc-gconv-extra-2.40.9000-24.fc42.aarch64 glibc-minimal-langpack-2.40.9000-24.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1.1-2.fc42.aarch64 jansson-2.14-1.fc42.aarch64 json-c-0.18-1.fc42.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-3.fc42.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.7-1.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.71-1.fc42.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.1-6.fc42.aarch64 libcurl-8.11.1-2.fc42.aarch64 libeconf-0.7.5-1.fc42.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-15.0.0-0.2.fc42.aarch64 libgomp-15.0.0-0.2.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.64.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.8-0.rc1.2.fc42.aarch64 libsemanage-3.8-0.rc1.1.fc42.aarch64 libsepol-3.8-0.rc1.1.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-15.0.0-0.2.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.6-1.fc42.aarch64 libtool-ltdl-2.5.4-1.fc42.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.36-11.fc42.aarch64 libxml2-2.12.8-2.fc41.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.7-1.fc42.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.aarch64 openssl-libs-3.2.2-8.fc42.aarch64 p11-kit-0.25.5-4.fc42.aarch64 p11-kit-trust-0.25.5-4.fc42.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.aarch64 pam-libs-1.7.0-3.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-300-1.no_annobin.0.fc42.noarch rpm-4.20.0-1.fc42.aarch64 rpm-build-4.20.0-1.fc42.aarch64 rpm-build-libs-4.20.0-1.fc42.aarch64 rpm-libs-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-1.fc42.aarch64 sqlite-libs-3.47.2-1.fc42.aarch64 systemd-libs-257-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-65.fc42.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.2-4.fc42.aarch64 xz-5.6.3-2.fc42.aarch64 xz-libs-5.6.3-2.fc42.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-5.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-16d8yl3i/ProDy/ProDy.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-5.fc42.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734539813.403672/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1734539813.403672/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 dnf5-5.2.8.1-2.fc42.aarch64 dnf5-plugins-5.2.8.1-2.fc42.aarch64 Finish: chroot init Start: build phase for ProDy-2.4.1-5.fc42.src.rpm Start: build setup for ProDy-2.4.1-5.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Wrote: /builddir/build/SRPMS/ProDy-2.4.1-5.fc42.src.rpm Updating and loading repositories: fedora 100% | 180.7 KiB/s | 11.7 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 24.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 109.2 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: gcc aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 97.8 MiB gcc-c++ aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 38.5 MiB python3-biopython aarch64 1.84-3.fc41 fedora 31.8 MiB python3-devel aarch64 3.13.1-2.fc42 fedora 1.8 MiB python3-matplotlib aarch64 3.9.3-1.fc42 fedora 21.0 MiB python3-nose noarch 1.3.7-61.fc42 fedora 1.2 MiB python3-numpy aarch64 1:2.2.0-2.fc42 fedora 33.9 MiB python3-scipy aarch64 1.14.1-2.fc42 fedora 64.4 MiB python3-setuptools noarch 74.1.3-4.fc42 fedora 8.4 MiB python3-urllib3 noarch 2.2.3-3.fc42 fedora 1.0 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.79-1.fc42 fedora 98.6 KiB annobin-plugin-gcc aarch64 12.79-1.fc42 fedora 997.2 KiB cairo aarch64 1.18.2-2.fc42 fedora 1.8 MiB cpp aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 35.3 MiB default-fonts-core-sans noarch 4.2-2.fc42 fedora 11.9 KiB dejavu-sans-fonts noarch 2.37-24.fc41 fedora 5.5 MiB expat aarch64 2.6.4-1.fc42 fedora 349.3 KiB flex aarch64 2.6.4-18.fc41 fedora 881.3 KiB flexiblas aarch64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib aarch64 3.4.4-3.fc41 fedora 9.8 MiB flexiblas-openblas-openmp aarch64 3.4.4-3.fc41 fedora 195.4 KiB fontconfig aarch64 2.15.0-8.fc41 fedora 2.4 MiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype aarch64 2.13.3-1.fc42 fedora 943.0 KiB fribidi aarch64 1.0.16-1.fc42 fedora 502.6 KiB gcc-plugin-annobin aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 67.5 KiB glib2 aarch64 2.83.0-3.fc42 fedora 15.3 MiB glibc-devel aarch64 2.40.9000-24.fc42 fedora 2.2 MiB gnutls aarch64 3.8.8-1.fc42 fedora 3.4 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 aarch64 1.3.14-16.fc41 fedora 495.9 KiB harfbuzz aarch64 10.1.0-2.fc42 fedora 2.5 MiB jbigkit-libs aarch64 2.1-30.fc41 fedora 437.7 KiB kernel-headers aarch64 6.13.0-0.rc3.29.fc42 fedora 6.4 MiB lcms2 aarch64 2.16-4.fc41 fedora 484.9 KiB libX11 aarch64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libXau aarch64 1.0.12-1.fc42 fedora 119.8 KiB libXext aarch64 1.3.6-2.fc41 fedora 210.0 KiB libXft aarch64 2.3.8-7.fc41 fedora 256.5 KiB libXrender aarch64 0.9.12-1.fc42 fedora 68.7 KiB libasan aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 1.5 MiB libatomic aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 66.1 KiB libb2 aarch64 0.98.1-12.fc41 fedora 202.2 KiB libgfortran aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 1.7 MiB libimagequant aarch64 4.0.3-5.fc41 fedora 667.1 KiB libjpeg-turbo aarch64 3.0.4-1.fc42 fedora 796.8 KiB liblerc aarch64 4.0.0-7.fc41 fedora 610.5 KiB libmpc aarch64 1.3.1-6.fc41 fedora 280.8 KiB libpng aarch64 2:1.6.44-1.fc42 fedora 333.9 KiB libqhull_r aarch64 1:8.0.2-5.fc41 fedora 583.5 KiB libraqm aarch64 0.10.1-1.fc42 fedora 196.8 KiB libstdc++-devel aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 15.4 MiB libtiff aarch64 4.7.0-2.fc42 fedora 658.8 KiB libubsan aarch64 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 460.6 KiB libwebp aarch64 1.4.0-4.fc41 fedora 1.2 MiB libxcb aarch64 1.17.0-3.fc42 fedora 5.0 MiB libxcrypt-devel aarch64 4.4.36-11.fc42 fedora 30.5 KiB m4 aarch64 1.4.19-10.fc41 fedora 668.7 KiB make aarch64 1:4.4.1-9.fc42 fedora 1.8 MiB mpdecimal aarch64 2.5.1-16.fc41 fedora 328.9 KiB nettle aarch64 3.10-3.fc41 fedora 956.7 KiB openblas aarch64 0.3.28-2.fc42 fedora 106.6 KiB openblas-openmp aarch64 0.3.28-2.fc42 fedora 20.6 MiB openjpeg aarch64 2.5.2-4.fc42 fedora 537.7 KiB pixman aarch64 0.44.2-1.fc42 fedora 644.4 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 fedora 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 aarch64 3.13.1-2.fc42 fedora 82.5 KiB python3-cairo aarch64 1.25.1-5.fc41 fedora 584.5 KiB python3-charset-normalizer noarch 3.4.0-1.fc42 fedora 319.9 KiB python3-contourpy aarch64 1.3.1-1.fc42 fedora 826.9 KiB python3-cycler noarch 0.11.0-13.fc41 fedora 37.6 KiB python3-dateutil noarch 1:2.8.2-16.fc41 fedora 879.2 KiB python3-fonttools aarch64 4.55.2-1.fc42 fedora 17.9 MiB python3-idna noarch 3.10-1.fc42 fedora 628.0 KiB python3-kiwisolver aarch64 1.4.7-1.fc42 fedora 289.4 KiB python3-libs aarch64 3.13.1-2.fc42 fedora 41.7 MiB python3-matplotlib-data noarch 3.9.3-1.fc42 fedora 726.7 KiB python3-matplotlib-data-fonts noarch 3.9.3-1.fc42 fedora 7.9 MiB python3-matplotlib-tk aarch64 3.9.3-1.fc42 fedora 296.4 KiB python3-numpy-f2py aarch64 1:2.2.0-2.fc42 fedora 2.0 MiB python3-olefile noarch 0.47-5.fc41 fedora 340.4 KiB python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB python3-pillow aarch64 11.0.0-1.fc42 fedora 4.8 MiB python3-pillow-tk aarch64 11.0.0-1.fc42 fedora 249.0 KiB python3-platformdirs noarch 4.2.2-2.fc41 fedora 168.6 KiB python3-pooch noarch 1.8.2-3.fc41 fedora 625.5 KiB python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-six noarch 1.16.0-23.fc41 fedora 118.3 KiB python3-tkinter aarch64 3.13.1-2.fc42 fedora 1.9 MiB tcl aarch64 1:8.6.15-6.fc42 fedora 4.3 MiB tk aarch64 1:8.6.15-1.fc42 fedora 3.9 MiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB Transaction Summary: Installing: 101 packages Total size of inbound packages is 153 MiB. Need to download 153 MiB. After this operation, 545 MiB extra will be used (install 545 MiB, remove 0 B). [ 1/101] python3-devel-0:3.13.1-2.fc42 100% | 21.9 MiB/s | 403.0 KiB | 00m00s [ 2/101] python3-matplotlib-0:3.9.3-1. 100% | 134.5 MiB/s | 4.6 MiB | 00m00s [ 3/101] python3-nose-0:1.3.7-61.fc42. 100% | 17.2 MiB/s | 352.8 KiB | 00m00s [ 4/101] python3-numpy-1:2.2.0-2.fc42. 100% | 178.6 MiB/s | 6.6 MiB | 00m00s [ 5/101] python3-biopython-0:1.84-3.fc 100% | 122.9 MiB/s | 11.8 MiB | 00m00s [ 6/101] python3-setuptools-0:74.1.3-4 100% | 47.9 MiB/s | 2.0 MiB | 00m00s [ 7/101] python3-urllib3-0:2.2.3-3.fc4 100% | 9.0 MiB/s | 277.8 KiB | 00m00s [ 8/101] python3-scipy-0:1.14.1-2.fc42 100% | 156.6 MiB/s | 16.1 MiB | 00m00s [ 9/101] flex-0:2.6.4-18.fc41.aarch64 100% | 47.5 MiB/s | 292.1 KiB | 00m00s [ 10/101] python3-0:3.13.1-2.fc42.aarch 100% | 13.1 MiB/s | 26.9 KiB | 00m00s [ 11/101] python3-libs-0:3.13.1-2.fc42. 100% | 252.2 MiB/s | 8.8 MiB | 00m00s [ 12/101] dejavu-sans-fonts-0:2.37-24.f 100% | 165.7 MiB/s | 1.3 MiB | 00m00s [ 13/101] freetype-0:2.13.3-1.fc42.aarc 100% | 97.8 MiB/s | 400.5 KiB | 00m00s [ 14/101] libqhull_r-1:8.0.2-5.fc41.aar 100% | 63.7 MiB/s | 195.8 KiB | 00m00s [ 15/101] python3-cairo-0:1.25.1-5.fc41 100% | 41.2 MiB/s | 126.5 KiB | 00m00s [ 16/101] python3-contourpy-0:1.3.1-1.f 100% | 63.4 MiB/s | 259.6 KiB | 00m00s [ 17/101] python3-cycler-0:0.11.0-13.fc 100% | 10.4 MiB/s | 21.3 KiB | 00m00s [ 18/101] python3-dateutil-1:2.8.2-16.f 100% | 58.5 MiB/s | 359.7 KiB | 00m00s [ 19/101] python3-fonttools-0:4.55.2-1. 100% | 228.6 MiB/s | 3.0 MiB | 00m00s [ 20/101] python3-kiwisolver-0:1.4.7-1. 100% | 20.9 MiB/s | 64.1 KiB | 00m00s [ 21/101] python3-matplotlib-data-0:3.9 100% | 127.5 MiB/s | 522.4 KiB | 00m00s [ 22/101] python3-matplotlib-tk-0:3.9.3 100% | 33.0 MiB/s | 101.5 KiB | 00m00s [ 23/101] python3-packaging-0:24.2-2.fc 100% | 50.1 MiB/s | 153.8 KiB | 00m00s [ 24/101] python3-pillow-0:11.0.0-1.fc4 100% | 162.1 MiB/s | 995.8 KiB | 00m00s [ 25/101] python3-pyparsing-0:3.1.2-7.f 100% | 67.7 MiB/s | 277.4 KiB | 00m00s [ 26/101] flexiblas-netlib-0:3.4.4-3.fc 100% | 233.9 MiB/s | 2.8 MiB | 00m00s [ 27/101] python3-numpy-f2py-1:2.2.0-2. 100% | 16.5 MiB/s | 490.6 KiB | 00m00s [ 28/101] python3-pooch-0:1.8.2-3.fc41. 100% | 12.3 MiB/s | 138.6 KiB | 00m00s [ 29/101] python3-idna-0:3.10-1.fc42.no 100% | 57.2 MiB/s | 117.2 KiB | 00m00s [ 30/101] glibc-devel-0:2.40.9000-24.fc 100% | 124.8 MiB/s | 639.2 KiB | 00m00s [ 31/101] libmpc-0:1.3.1-6.fc41.aarch64 100% | 35.5 MiB/s | 72.7 KiB | 00m00s [ 32/101] make-1:4.4.1-9.fc42.aarch64 100% | 142.7 MiB/s | 584.6 KiB | 00m00s [ 33/101] gcc-c++-0:15.0.0-0.2.fc42.aar 100% | 40.0 MiB/s | 13.6 MiB | 00m00s [ 34/101] libstdc++-devel-0:15.0.0-0.2. 100% | 88.1 MiB/s | 2.6 MiB | 00m00s [ 35/101] m4-0:1.4.19-10.fc41.aarch64 100% | 98.1 MiB/s | 301.4 KiB | 00m00s [ 36/101] expat-0:2.6.4-1.fc42.aarch64 100% | 36.3 MiB/s | 111.5 KiB | 00m00s [ 37/101] libb2-0:0.98.1-12.fc41.aarch6 100% | 24.4 MiB/s | 24.9 KiB | 00m00s [ 38/101] mpdecimal-0:2.5.1-16.fc41.aar 100% | 43.5 MiB/s | 89.1 KiB | 00m00s [ 39/101] python-pip-wheel-0:24.3.1-1.f 100% | 109.5 MiB/s | 1.2 MiB | 00m00s [ 40/101] tzdata-0:2024b-1.fc42.noarch 100% | 139.2 MiB/s | 712.7 KiB | 00m00s [ 41/101] fonts-filesystem-1:2.0.5-17.f 100% | 4.1 MiB/s | 8.5 KiB | 00m00s [ 42/101] harfbuzz-0:10.1.0-2.fc42.aarc 100% | 162.1 MiB/s | 996.1 KiB | 00m00s [ 43/101] libpng-2:1.6.44-1.fc42.aarch6 100% | 38.3 MiB/s | 117.7 KiB | 00m00s [ 44/101] cairo-0:1.18.2-2.fc42.aarch64 100% | 110.4 MiB/s | 678.6 KiB | 00m00s [ 45/101] python3-six-0:1.16.0-23.fc41. 100% | 20.1 MiB/s | 41.2 KiB | 00m00s [ 46/101] python3-matplotlib-data-fonts 100% | 212.8 MiB/s | 2.3 MiB | 00m00s [ 47/101] python3-pillow-tk-0:11.0.0-1. 100% | 15.2 MiB/s | 31.2 KiB | 00m00s [ 48/101] python3-tkinter-0:3.13.1-2.fc 100% | 73.7 MiB/s | 377.1 KiB | 00m00s [ 49/101] lcms2-0:2.16-4.fc41.aarch64 100% | 59.1 MiB/s | 181.7 KiB | 00m00s [ 50/101] libimagequant-0:4.0.3-5.fc41. 100% | 69.7 MiB/s | 285.3 KiB | 00m00s [ 51/101] libjpeg-turbo-0:3.0.4-1.fc42. 100% | 85.6 MiB/s | 262.9 KiB | 00m00s [ 52/101] libraqm-0:0.10.1-1.fc42.aarch 100% | 7.3 MiB/s | 22.3 KiB | 00m00s [ 53/101] libtiff-0:4.7.0-2.fc42.aarch6 100% | 51.0 MiB/s | 208.8 KiB | 00m00s [ 54/101] libwebp-0:1.4.0-4.fc41.aarch6 100% | 48.8 MiB/s | 249.6 KiB | 00m00s [ 55/101] libxcb-0:1.17.0-3.fc42.aarch6 100% | 48.3 MiB/s | 247.3 KiB | 00m00s [ 56/101] openjpeg-0:2.5.2-4.fc42.aarch 100% | 59.9 MiB/s | 184.1 KiB | 00m00s [ 57/101] python3-olefile-0:0.47-5.fc41 100% | 24.3 MiB/s | 74.6 KiB | 00m00s [ 58/101] flexiblas-0:3.4.4-3.fc41.aarc 100% | 12.3 MiB/s | 25.3 KiB | 00m00s [ 59/101] gcc-0:15.0.0-0.2.fc42.aarch64 100% | 65.7 MiB/s | 35.1 MiB | 00m01s [ 60/101] flexiblas-openblas-openmp-0:3 100% | 458.0 KiB/s | 16.5 KiB | 00m00s [ 61/101] python3-requests-0:2.32.3-3.f 100% | 51.9 MiB/s | 159.4 KiB | 00m00s [ 62/101] python3-platformdirs-0:4.2.2- 100% | 7.5 MiB/s | 46.3 KiB | 00m00s [ 63/101] libxcrypt-devel-0:4.4.36-11.f 100% | 9.2 MiB/s | 28.1 KiB | 00m00s [ 64/101] kernel-headers-0:6.13.0-0.rc3 100% | 179.2 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100% | 10.6 MiB/s | 32.5 KiB | 00m00s [ 78/101] liblerc-0:4.0.0-7.fc41.aarch6 100% | 45.9 MiB/s | 188.0 KiB | 00m00s [ 79/101] python3-charset-normalizer-0: 100% | 13.3 MiB/s | 109.2 KiB | 00m00s [ 80/101] gnutls-0:3.8.8-1.fc42.aarch64 100% | 96.8 MiB/s | 1.1 MiB | 00m00s [ 81/101] openblas-openmp-0:0.3.28-2.fc 100% | 198.7 MiB/s | 4.0 MiB | 00m00s [ 82/101] default-fonts-core-sans-0:4.2 100% | 3.8 MiB/s | 31.3 KiB | 00m00s [ 83/101] xml-common-0:0.6.3-65.fc41.no 100% | 7.6 MiB/s | 31.2 KiB | 00m00s [ 84/101] openblas-0:0.3.28-2.fc42.aarc 100% | 13.3 MiB/s | 40.9 KiB | 00m00s [ 85/101] libX11-common-0:1.8.10-2.fc42 100% | 34.3 MiB/s | 175.9 KiB | 00m00s [ 86/101] libXft-0:2.3.8-7.fc41.aarch64 100% | 17.5 MiB/s | 71.5 KiB | 00m00s [ 87/101] nettle-0:3.10-3.fc41.aarch64 100% | 106.9 MiB/s | 437.9 KiB | 00m00s [ 88/101] abattis-cantarell-vf-fonts-0: 100% | 29.4 MiB/s | 120.2 KiB | 00m00s [ 89/101] google-noto-sans-vf-fonts-0:2 100% | 96.7 MiB/s | 593.9 KiB | 00m00s [ 90/101] libasan-0:15.0.0-0.2.fc42.aar 100% | 19.4 MiB/s | 456.3 KiB | 00m00s [ 91/101] libatomic-0:15.0.0-0.2.fc42.a 100% | 793.1 KiB/s | 17.4 KiB | 00m00s [ 92/101] google-noto-fonts-common-0:20 100% | 538.6 KiB/s | 17.8 KiB | 00m00s [ 93/101] annobin-plugin-gcc-0:12.79-1. 100% | 158.8 MiB/s | 975.9 KiB | 00m00s [ 94/101] libgfortran-0:15.0.0-0.2.fc42 100% | 19.6 MiB/s | 440.5 KiB | 00m00s [ 95/101] libubsan-0:15.0.0-0.2.fc42.aa 100% | 8.0 MiB/s | 188.3 KiB | 00m00s [ 96/101] annobin-docs-0:12.79-1.fc42.n 100% | 30.2 MiB/s | 92.7 KiB | 00m00s [ 97/101] pyproject-rpm-macros-0:1.16.3 100% | 14.5 MiB/s | 44.6 KiB | 00m00s [ 98/101] python-rpm-macros-0:3.13-3.fc 100% | 8.6 MiB/s | 17.7 KiB | 00m00s [ 99/101] python3-rpm-generators-0:14-1 100% | 14.3 MiB/s | 29.3 KiB | 00m00s [100/101] python3-rpm-macros-0:3.13-3.f 100% | 12.2 MiB/s | 12.4 KiB | 00m00s [101/101] gcc-plugin-annobin-0:15.0.0-0 100% | 1.4 MiB/s | 30.8 KiB | 00m00s 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100% | 3.5 MiB/s | 69.0 KiB | 00m00s [101/103] Installing python3-biopython- 100% | 265.2 MiB/s | 32.1 MiB | 00m00s [102/103] Installing python3-scipy-0:1. 100% | 293.1 MiB/s | 64.8 MiB | 00m00s [103/103] Installing python3-nose-0:1.3 100% | 5.7 MiB/s | 1.3 MiB | 00m00s Warning: skipped OpenPGP checks for 9 packages from repository: https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: build setup for ProDy-2.4.1-5.fc42.src.rpm Start: rpmbuild ProDy-2.4.1-5.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1721174400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.JTJisW + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + test -d /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/rm -rf /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/ProDy-2.4.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.hZlIfi + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + cd /builddir/build/BUILD/ProDy-2.4.1-build + rm -rf ProDy-2.4.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ProDy-2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ProDy-2.4.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/ProDy-change_requires.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + find prody/proteins/ccealign -name '*.h' -exec chmod 0644 '{}' ';' + find prody/proteins/ccealign -name '*.cpp' -exec chmod 0644 '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3urMHI + umask 022 + cd /builddir/build/BUILD/ProDy-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ProDy-2.4.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-aarch64-cpython-313 creating build/lib.linux-aarch64-cpython-313/prody copying prody/__init__.py -> build/lib.linux-aarch64-cpython-313/prody creating build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/acceptor.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/angle.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atom.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atomgroup.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atomic.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/atommap.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/bond.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/chain.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/crossterm.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/dihedral.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/donor.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/fields.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/flags.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/functions.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/hierview.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/improper.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/nbexclusion.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/pointer.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/residue.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/segment.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/select.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/selection.py -> build/lib.linux-aarch64-cpython-313/prody/atomic copying prody/atomic/subset.py -> build/lib.linux-aarch64-cpython-313/prody/atomic creating build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/cath.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/dali.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/goa.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/pfam.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/quartataweb.py -> build/lib.linux-aarch64-cpython-313/prody/database copying prody/database/uniprot.py -> build/lib.linux-aarch64-cpython-313/prody/database creating build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/adaptive.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/analysis.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/anm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/bbenm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/bildfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/clustenm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/compare.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/editing.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/entropy.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/essa.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/exanm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/exgnm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/functions.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/gamma.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/gnm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/heatmapper.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/imanm.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/mechstiff.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/mode.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/modeset.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/nma.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/nmdfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/pca.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/perturb.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/plotting.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/rtb.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/sampling.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/signature.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics copying prody/dynamics/vmdfile.py -> build/lib.linux-aarch64-cpython-313/prody/dynamics creating build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/conformation.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/ensemble.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/functions.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble copying prody/ensemble/pdbensemble.py -> build/lib.linux-aarch64-cpython-313/prody/ensemble creating build/lib.linux-aarch64-cpython-313/prody/kdtree copying prody/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/kdtree copying prody/kdtree/kdtree.py -> build/lib.linux-aarch64-cpython-313/prody/kdtree creating build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/contacts.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/measure.py -> build/lib.linux-aarch64-cpython-313/prody/measure copying prody/measure/transform.py -> build/lib.linux-aarch64-cpython-313/prody/measure creating build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/blastpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/ciffile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/cifheader.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/compare.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/dssp.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/emdfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/fixer.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/functions.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/header.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/localpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/pdbclusters.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/pdbfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/starfile.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/stride.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/waterbridges.py -> build/lib.linux-aarch64-cpython-313/prody/proteins copying prody/proteins/wwpdb.py -> build/lib.linux-aarch64-cpython-313/prody/proteins creating build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/analysis.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/msa.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/msafile.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/plotting.py -> build/lib.linux-aarch64-cpython-313/prody/sequence copying prody/sequence/sequence.py -> build/lib.linux-aarch64-cpython-313/prody/sequence creating build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/dcdfile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/frame.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/psffile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajbase.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajectory.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory copying prody/trajectory/trajfile.py -> build/lib.linux-aarch64-cpython-313/prody/trajectory creating build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/cluster.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/functions.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/hic.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/norm.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin copying prody/chromatin/straw.py -> build/lib.linux-aarch64-cpython-313/prody/chromatin creating build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/bird.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/ccd.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/functions.py -> build/lib.linux-aarch64-cpython-313/prody/compounds copying prody/compounds/pdbligands.py -> build/lib.linux-aarch64-cpython-313/prody/compounds creating build/lib.linux-aarch64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/domain_decomposition copying prody/domain_decomposition/spectrus.py -> build/lib.linux-aarch64-cpython-313/prody/domain_decomposition creating build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/TreeConstruction.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/catchall.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/checkers.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/doctools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/drawtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/eigtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/laptools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/legacy.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/logger.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/misctools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/pathtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/seqtools.py -> build/lib.linux-aarch64-cpython-313/prody/utilities copying prody/utilities/settings.py -> build/lib.linux-aarch64-cpython-313/prody/utilities creating build/lib.linux-aarch64-cpython-313/prody/apps copying prody/apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps copying prody/apps/apptools.py -> build/lib.linux-aarch64-cpython-313/prody/apps creating build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/nmaoptions.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_align.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_anm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_biomol.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_blast.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_catdcd.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_clustenm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_contacts.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_eda.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_energy.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_fetch.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_gnm.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_pca.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps copying prody/apps/prody_apps/prody_select.py -> build/lib.linux-aarch64-cpython-313/prody/apps/prody_apps creating build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_coevol.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_conserv.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_fetch.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_filter.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_merge.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_occupancy.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_rankorder.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_refine.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps copying prody/apps/evol_apps/evol_search.py -> build/lib.linux-aarch64-cpython-313/prody/apps/evol_apps creating build/lib.linux-aarch64-cpython-313/prody/tests copying prody/tests/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests creating build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_anm.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_catdcd.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_examples.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_gnm.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps copying prody/tests/apps/test_prody_pca.py -> build/lib.linux-aarch64-cpython-313/prody/tests/apps creating build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atomic.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_atommap.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_fragment.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_hierview.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_select.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic copying prody/tests/atomic/test_subset.py -> build/lib.linux-aarch64-cpython-313/prody/tests/atomic creating build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles creating build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_editing.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_enms.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_pca.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics copying prody/tests/dynamics/test_signature.py -> build/lib.linux-aarch64-cpython-313/prody/tests/dynamics creating build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_conformation.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_ensemble.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_functions.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble copying prody/tests/ensemble/test_pdbensemble.py -> build/lib.linux-aarch64-cpython-313/prody/tests/ensemble creating build/lib.linux-aarch64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/kdtree copying prody/tests/kdtree/test_kdtree.py -> build/lib.linux-aarch64-cpython-313/prody/tests/kdtree creating build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_contacts.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_measure.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure copying prody/tests/measure/test_transform.py -> build/lib.linux-aarch64-cpython-313/prody/tests/measure creating build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_ciffile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_dssp.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_header.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_localpdb.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_pdbfile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins copying prody/tests/proteins/test_wwpdb.py -> build/lib.linux-aarch64-cpython-313/prody/tests/proteins creating build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_analysis.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msa.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_msafile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence copying prody/tests/sequence/test_sequence.py -> build/lib.linux-aarch64-cpython-313/prody/tests/sequence creating build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_dcdfile.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory copying prody/tests/trajectory/test_frame.py -> build/lib.linux-aarch64-cpython-313/prody/tests/trajectory creating build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_checkers.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_misctools.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities copying prody/tests/utilities/test_pathtools.py -> build/lib.linux-aarch64-cpython-313/prody/tests/utilities creating build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/mod_res_map.dat -> build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/utilities/datafiles/saxs_water.dat -> build/lib.linux-aarch64-cpython-313/prody/utilities/datafiles copying prody/tests/datafiles/pdb1ejg.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ejg_oneatom.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1r19_dssp.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_h36.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1tw7_step3_charmm2namd_doubled_hex.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb1ubi_ca.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2gb1_truncated.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_ca.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2k39_truncated.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb2nwl-opm.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3hsy.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3mht.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3o21.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb3p3w.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_h36.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb4v8r_hex.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdb6fpj_Bb_fixed_solv_ions.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pdbRTER.pdb -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/commute1ubi.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/hit1ubi.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_di.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot_sca.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_evalues.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_vectors.dat -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/anm1ubi_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/exanm2nwl_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/gnm1ubi_kirchhoff.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/pca2k39_cov.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_hessian.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/rtb2gb1_project.coo -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/dcd2k39_truncated.dcd -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/xmlSTI.xml -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_3hsyA_3o21A.fasta -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.fasta -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.slx -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/msa_Cys_knot.sth -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6yfy.cif -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles copying prody/tests/datafiles/mmcif_6zu5.cif -> build/lib.linux-aarch64-cpython-313/prody/tests/datafiles running build_ext building 'prody.dynamics.rtbtools' extension creating build/temp.linux-aarch64-cpython-313 creating build/temp.linux-aarch64-cpython-313/prody creating build/temp.linux-aarch64-cpython-313/prody/dynamics gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/_core/include -I/usr/include/python3.13 -c prody/dynamics/rtbtools.c -o build/temp.linux-aarch64-cpython-313/prody/dynamics/rtbtools.o In file included from /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/npy_common.h:380, from /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:8, from /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5, from prody/dynamics/rtbtools.c:9: prody/dynamics/rtbtools.c: In function ‘dblock_projections2’: prody/dynamics/rtbtools.c:422:17: error: expected identifier or ‘(’ before ‘__extension__’ 422 | double **X, **I, **IC, *CM, *W, **A, **ISQT; | ^ prody/dynamics/rtbtools.c:431:3: error: ‘CM’ undeclared (first use in this function) 431 | CM = dvector(1, 3); | ^~ prody/dynamics/rtbtools.c:431:3: note: each undeclared identifier is reported only once for each function it appears in prody/dynamics/rtbtools.c:432:5: error: lvalue required as left operand of assignment 432 | I = dmatrix(1, 3, 1, 3); | ^ prody/dynamics/rtbtools.c:433:3: error: ‘IC’ undeclared (first use in this function); did you mean ‘I’? 433 | IC = dmatrix(1, 3, 1, 3); | ^~ | I prody/dynamics/rtbtools.c:434:3: error: ‘W’ undeclared (first use in this function) 434 | W = dvector(1, 3); | ^ prody/dynamics/rtbtools.c:435:3: error: ‘A’ undeclared (first use in this function) 435 | A = dmatrix(1, 3, 1, 3); | ^ prody/dynamics/rtbtools.c:436:3: error: ‘ISQT’ undeclared (first use in this function) 436 | ISQT = dmatrix(1, 3, 1, 3); | ^~~~ prody/dynamics/rtbtools.c:445:28: error: subscripted value is neither array nor pointer nor vector 445 | for(i=1; i<=3; i++) I[i][j] = 0.0; | ^ prody/dynamics/rtbtools.c:481:10: error: subscripted value is neither array nor pointer nor vector 481 | I[i][i] += (dd - X[k][i] * X[k][i]); | ^ prody/dynamics/rtbtools.c:484:12: error: subscripted value is neither array nor pointer nor vector 484 | I[i][j] -= X[k][i]*X[k][j]; | ^ prody/dynamics/rtbtools.c:485:12: error: subscripted value is neither array nor pointer nor vector 485 | I[j][i] = I[i][j]; | ^ prody/dynamics/rtbtools.c:485:22: error: subscripted value is neither array nor pointer nor vector 485 | I[j][i] = I[i][j]; | ^ prody/dynamics/rtbtools.c:493:25: error: subscripted value is neither array nor pointer nor vector 493 | IC[i][j]=I[i][j]; | ^ prody/dynamics/rtbtools.c:548:16: error: incompatible type for argument 1 of ‘free_dmatrix’ 548 | free_dmatrix(I, 1, 3, 1, 3); | ^ | | | complex float prody/dynamics/rtbtools.c:72:28: note: expected ‘double **’ but argument is of type ‘complex float’ 72 | void free_dmatrix(double **m, long nrl, long nrh, long ncl, long nch); | ~~~~~~~~~^ error: command '/usr/bin/gcc' failed with exit code 1 error: Bad exit status from /var/tmp/rpm-tmp.3urMHI (%build) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.3urMHI (%build) Finish: rpmbuild ProDy-2.4.1-5.fc42.src.rpm Finish: build phase for ProDy-2.4.1-5.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names ERROR: Exception(/var/lib/copr-rpmbuild/results/ProDy-2.4.1-5.fc42.src.rpm) Config(fedora-rawhide-aarch64) 0 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_failure=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot ERROR: Command failed: # /usr/bin/systemd-nspawn -q -M c0ec090731aa40e1a72691eebbe524be -D /var/lib/mock/fedora-rawhide-aarch64-1734539813.403672/root -a -u mockbuild --capability=cap_ipc_lock --rlimit=RLIMIT_NOFILE=10240 --capability=cap_ipc_lock --bind=/tmp/mock-resolv.ht4h2taj:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -bb --target aarch64 --nodeps /builddir/build/originals/ProDy.spec' Copr build error: Build failed