Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c248' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8429355-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le Version: 1.2 PID: 21168 Logging PID: 21169 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8429355, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': '1295382f6c8df8f0657f5f17cc5504bd467038a8', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/python-pysam', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'python-pysam', 'package_version': '0.22.1-2', 'project_dirname': 'gcc-15-smoketest-3', 'project_name': 'gcc-15-smoketest-3', 'project_owner': 'dmalcolm', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3/fedora-rawhide-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch', 'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch', 'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}], 'sandbox': 'dmalcolm/gcc-15-smoketest-3--dmalcolm', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'dmalcolm', 'tags': [], 'task_id': '8429355-fedora-rawhide-ppc64le', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/python-pysam /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/python-pysam', '/var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam'... Running: git checkout 1295382f6c8df8f0657f5f17cc5504bd467038a8 -- cmd: ['git', 'checkout', '1295382f6c8df8f0657f5f17cc5504bd467038a8', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam rc: 0 stdout: stderr: Note: switching to '1295382f6c8df8f0657f5f17cc5504bd467038a8'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1295382 automatic import of python-pysam Running: dist-git-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734901898.014894 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam/python-pysam.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734901898.014894 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam/python-pysam.spec) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1734901898.014894/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-5143a6a3-94f5-449a-a7c5-8a67d970960c INFO: Checking that b0b15331cb6c97f5f50e168bfb12c665954c30db011751c3efecd74ff24260c6 image matches host's architecture INFO: Copy content of container b0b15331cb6c97f5f50e168bfb12c665954c30db011751c3efecd74ff24260c6 to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1734901898.014894/root INFO: mounting b0b15331cb6c97f5f50e168bfb12c665954c30db011751c3efecd74ff24260c6 with podman image mount INFO: image b0b15331cb6c97f5f50e168bfb12c665954c30db011751c3efecd74ff24260c6 as /var/lib/containers/storage/overlay/017d64da892075c0fbe935291fa2d03e2830a055191207fcd8e6f77d8a168577/merged INFO: umounting image b0b15331cb6c97f5f50e168bfb12c665954c30db011751c3efecd74ff24260c6 (/var/lib/containers/storage/overlay/017d64da892075c0fbe935291fa2d03e2830a055191207fcd8e6f77d8a168577/merged) with podman image umount INFO: Removing image mock-bootstrap-5143a6a3-94f5-449a-a7c5-8a67d970960c INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1734901898.014894/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.ppc64le rpm-sequoia-1.7.0-3.fc42.ppc64le dnf5-5.2.8.1-2.fc42.ppc64le dnf5-plugins-5.2.8.1-2.fc42.ppc64le Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 133.7 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 32.0 KiB/s | 1.5 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 19.8 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 21.6 MiB/s | 7.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash ppc64le 5.2.37-1.fc42 fedora 8.7 MiB bzip2 ppc64le 1.0.8-19.fc42 copr_base 168.6 KiB coreutils ppc64le 9.5-11.fc42 copr_base 9.1 MiB cpio ppc64le 2.15-2.fc41 fedora 1.2 MiB diffutils ppc64le 3.10-8.fc42 copr_base 1.7 MiB fedora-release-common noarch 42-0.11 fedora 19.8 KiB findutils ppc64le 1:4.10.0-4.fc42 copr_base 2.0 MiB gawk ppc64le 5.3.0-4.fc41 fedora 4.5 MiB glibc-minimal-langpack ppc64le 2.40.9000-24.fc42 copr_base 0.0 B grep ppc64le 3.11-9.fc42 copr_base 1.0 MiB gzip ppc64le 1.13-2.fc42 copr_base 422.7 KiB info ppc64le 7.1.1-2.fc42 fedora 741.5 KiB patch ppc64le 2.7.6-25.fc42 copr_base 323.0 KiB redhat-rpm-config noarch 300-1.no_annobin.0.fc42 copr_base 186.6 KiB rpm-build ppc64le 4.20.0-1.fc42 fedora 1.4 MiB sed ppc64le 4.9-3.fc41 fedora 1.0 MiB shadow-utils ppc64le 2:4.17.0~rc1-1.fc42 fedora 4.9 MiB tar ppc64le 2:1.35-4.fc41 fedora 3.2 MiB unzip ppc64le 6.0-65.fc42 fedora 2.3 MiB util-linux ppc64le 2.40.2-8.fc42 fedora 17.2 MiB which ppc64le 2.21-42.fc41 fedora 248.0 KiB xz ppc64le 1:5.6.3-2.fc42 fedora 1.5 MiB Installing dependencies: add-determinism ppc64le 0.4.3-1.fc42 fedora 2.6 MiB alternatives ppc64le 1.31-1.fc42 fedora 88.7 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs ppc64le 4.0.2-1.fc42 copr_base 479.0 KiB authselect ppc64le 1.5.0-8.fc42 copr_base 179.8 KiB authselect-libs ppc64le 1.5.0-8.fc42 copr_base 865.4 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils ppc64le 2.43.50-9.fc42 copr_base 30.9 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 fedora 735.0 B bzip2-libs ppc64le 1.0.8-19.fc42 copr_base 135.0 KiB ca-certificates noarch 2024.2.69_v8.0.401-3.fc42 fedora 2.6 MiB coreutils-common ppc64le 9.5-11.fc42 copr_base 11.2 MiB cracklib ppc64le 2.9.11-6.fc42 copr_base 417.1 KiB crypto-policies noarch 20241128-1.gitbb7b0b0.fc42 fedora 137.3 KiB curl ppc64le 8.11.1-2.fc42 copr_base 515.9 KiB cyrus-sasl-lib ppc64le 2.1.28-27.fc41 fedora 3.5 MiB debugedit ppc64le 5.1-2.fc42 copr_base 305.4 KiB dwz ppc64le 0.15-8.fc42 copr_base 383.5 KiB ed ppc64le 1.20.2-2.fc41 fedora 282.8 KiB efi-srpm-macros noarch 5-13.fc42 fedora 40.2 KiB elfutils ppc64le 0.192-7.fc42 copr_base 3.4 MiB elfutils-debuginfod-client ppc64le 0.192-7.fc42 copr_base 140.9 KiB elfutils-default-yama-scope noarch 0.192-7.fc42 copr_base 1.8 KiB elfutils-libelf ppc64le 0.192-7.fc42 copr_base 1.2 MiB elfutils-libs ppc64le 0.192-7.fc42 copr_base 862.5 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.11 fedora 0.0 B fedora-release-identity-basic noarch 42-0.11 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file ppc64le 5.45-8.fc42 fedora 139.5 KiB file-libs ppc64le 5.45-8.fc42 fedora 10.0 MiB filesystem ppc64le 3.18-29.fc42 fedora 106.0 B filesystem-srpm-macros noarch 3.18-29.fc42 fedora 36.1 KiB fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal ppc64le 15.2-4.fc42 copr_base 15.1 MiB gdbm ppc64le 1:1.23-7.fc41 fedora 928.3 KiB gdbm-libs ppc64le 1:1.23-7.fc41 fedora 425.5 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc ppc64le 2.40.9000-24.fc42 copr_base 11.3 MiB glibc-common ppc64le 2.40.9000-24.fc42 copr_base 1.5 MiB glibc-gconv-extra ppc64le 2.40.9000-24.fc42 copr_base 18.3 MiB gmp ppc64le 1:6.3.0-2.fc41 fedora 850.3 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc42 fedora 60.8 KiB jansson ppc64le 2.14-1.fc42 copr_base 154.6 KiB json-c ppc64le 0.18-1.fc42 copr_base 135.6 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs ppc64le 1.6.3-4.fc42 copr_base 96.5 KiB krb5-libs ppc64le 1.21.3-3.fc42 copr_base 2.9 MiB libacl ppc64le 2.3.2-2.fc42 copr_base 66.0 KiB libarchive ppc64le 3.7.7-1.fc42 copr_base 1.3 MiB libattr ppc64le 2.5.2-4.fc41 fedora 196.3 KiB libblkid ppc64le 2.40.2-8.fc42 fedora 482.6 KiB libbrotli ppc64le 1.1.0-5.fc42 copr_base 967.6 KiB libcap ppc64le 2.71-1.fc42 copr_base 497.8 KiB libcap-ng ppc64le 0.8.5-3.fc42 copr_base 158.1 KiB libcom_err ppc64le 1.47.1-6.fc42 fedora 239.1 KiB libcurl ppc64le 8.11.1-2.fc42 copr_base 1.0 MiB libeconf ppc64le 0.7.5-1.fc42 copr_base 78.6 KiB libevent ppc64le 2.1.12-14.fc42 copr_base 1.2 MiB libfdisk ppc64le 2.40.2-8.fc42 fedora 611.0 KiB libffi ppc64le 3.4.6-3.fc42 fedora 218.0 KiB libgcc ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 282.8 KiB libgomp ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 629.0 KiB libidn2 ppc64le 2.3.7-2.fc42 copr_base 391.3 KiB libmount ppc64le 2.40.2-8.fc42 fedora 548.0 KiB libnghttp2 ppc64le 1.64.0-1.fc42 fedora 326.1 KiB libpkgconf ppc64le 2.3.0-1.fc42 copr_base 131.9 KiB libpsl ppc64le 0.21.5-4.fc42 copr_base 130.9 KiB libpwquality ppc64le 1.4.5-11.fc42 copr_base 603.9 KiB librtas ppc64le 2.0.6-2.fc41 fedora 497.6 KiB libselinux ppc64le 3.8-0.rc3.1.fc42 fedora 259.5 KiB libsemanage ppc64le 3.8-0.rc3.1.fc42 fedora 417.0 KiB libsepol ppc64le 3.8-0.rc3.1.fc42 fedora 1.0 MiB libsmartcols ppc64le 2.40.2-8.fc42 fedora 353.5 KiB libssh ppc64le 0.11.1-1.fc42 copr_base 703.7 KiB libssh-config noarch 0.11.1-1.fc42 copr_base 277.0 B libstdc++ ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 3.8 MiB libtasn1 ppc64le 4.19.0-9.fc42 copr_base 217.4 KiB libtirpc ppc64le 1.3.6-1.fc42 fedora 276.8 KiB libtool-ltdl ppc64le 2.5.4-1.fc42 copr_base 92.0 KiB libunistring ppc64le 1.1-8.fc42 copr_base 1.9 MiB libuuid ppc64le 2.40.2-8.fc42 fedora 197.4 KiB libverto ppc64le 0.3.2-9.fc41 fedora 197.2 KiB libxcrypt ppc64le 4.4.36-12.fc42 fedora 333.0 KiB libxml2 ppc64le 2.12.8-2.fc42 copr_base 2.2 MiB libzstd ppc64le 1.5.6-2.fc41 fedora 988.0 KiB lua-libs ppc64le 5.4.7-1.fc42 fedora 521.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs ppc64le 1.10.0-1.fc42 copr_base 259.2 KiB mpfr ppc64le 4.2.1-5.fc42 copr_base 905.5 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs ppc64le 6.5-2.20240629.fc41 fedora 2.4 MiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap ppc64le 2.6.8-6.fc42 copr_base 874.8 KiB openssl-libs ppc64le 1:3.2.2-8.fc42 copr_base 7.6 MiB p11-kit ppc64le 0.25.5-4.fc42 copr_base 2.7 MiB p11-kit-trust ppc64le 0.25.5-4.fc42 copr_base 520.5 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam ppc64le 1.7.0-3.fc42 copr_base 4.2 MiB pam-libs ppc64le 1.7.0-3.fc42 copr_base 282.1 KiB pcre2 ppc64le 10.44-1.fc42.1 copr_base 772.1 KiB pcre2-syntax noarch 10.44-1.fc42.1 copr_base 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf ppc64le 2.3.0-1.fc42 copr_base 111.0 KiB pkgconf-m4 noarch 2.3.0-1.fc42 copr_base 14.4 KiB pkgconf-pkg-config ppc64le 2.3.0-1.fc42 copr_base 990.0 B popt ppc64le 1.19-7.fc42 copr_base 206.8 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 fedora 456.0 B readline ppc64le 8.2-11.fc42 fedora 881.0 KiB rpm ppc64le 4.20.0-1.fc42 fedora 4.8 MiB rpm-build-libs ppc64le 4.20.0-1.fc42 fedora 390.6 KiB rpm-libs ppc64le 4.20.0-1.fc42 fedora 1.2 MiB rpm-sequoia ppc64le 1.7.0-3.fc42 fedora 2.7 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs ppc64le 3.47.2-1.fc42 fedora 1.8 MiB systemd-libs ppc64le 257.1-1.fc42 fedora 2.9 MiB util-linux-core ppc64le 2.40.2-8.fc42 fedora 6.2 MiB xxhash-libs ppc64le 0.8.2-4.fc42 fedora 211.9 KiB xz-libs ppc64le 1:5.6.3-2.fc42 fedora 394.1 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip ppc64le 3.0-42.fc42 fedora 883.2 KiB zlib-ng-compat ppc64le 2.2.2-1.fc42 fedora 197.7 KiB zstd ppc64le 1.5.6-2.fc41 fedora 2.1 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 155 packages Total size of inbound packages is 55 MiB. Need to download 0 B. After this operation, 254 MiB extra will be used (install 254 MiB, remove 0 B). [1/1] tar-2:1.35-4.fc41.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] rpm-build-0:4.20.0-1.fc42.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] unzip-0:6.0-65.fc42.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] cpio-0:2.15-2.fc41.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/5] which-0:2.21-42.fc41.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded 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Already downloaded -------------------------------------------------------------------------------- [153/153] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/154] libssh-config-0:0.11.1-1.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [154/154] Total 100% | 0.0 B/s | 0.0 B | 00m00s [ 1/155] libunistring-0:1.1-8.fc42.ppc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [155/155] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. 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ed-0:1.20.2-2.fc41 100% | 92.8 MiB/s | 285.1 KiB | 00m00s [100/157] Installing patch-0:2.7.6-25.f 100% | 105.6 MiB/s | 324.5 KiB | 00m00s [101/157] Installing elfutils-default-y 100% | 408.6 KiB/s | 2.0 KiB | 00m00s [102/157] Installing elfutils-libs-0:0. 100% | 105.5 MiB/s | 864.3 KiB | 00m00s [103/157] Installing cpio-0:2.15-2.fc41 100% | 111.0 MiB/s | 1.2 MiB | 00m00s [104/157] Installing diffutils-0:3.10-8 100% | 110.9 MiB/s | 1.7 MiB | 00m00s [105/157] Installing librtas-0:2.0.6-2. 100% | 44.4 MiB/s | 499.7 KiB | 00m00s [106/157] Installing libgomp-0:15.0.0-0 100% | 123.1 MiB/s | 630.4 KiB | 00m00s [107/157] Installing rpm-build-libs-0:4 100% | 127.4 MiB/s | 391.4 KiB | 00m00s [108/157] Installing libverto-0:0.3.2-9 100% | 97.2 MiB/s | 199.0 KiB | 00m00s [109/157] Installing libpkgconf-0:2.3.0 100% | 64.9 MiB/s | 133.0 KiB | 00m00s [110/157] Installing pkgconf-0:2.3.0-1. 100% | 55.4 MiB/s | 113.5 KiB | 00m00s [111/157] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [112/157] Installing keyutils-libs-0:1. 100% | 47.8 MiB/s | 97.9 KiB | 00m00s [113/157] Installing krb5-libs-0:1.21.3 100% | 133.3 MiB/s | 2.9 MiB | 00m00s [114/157] Installing libtirpc-0:1.3.6-1 100% | 68.0 MiB/s | 278.5 KiB | 00m00s [115/157] Installing pam-0:1.7.0-3.fc42 100% | 98.2 MiB/s | 4.2 MiB | 00m00s [116/157] Installing libssh-0:0.11.1-1. 100% | 114.9 MiB/s | 705.8 KiB | 00m00s [117/157] Installing jansson-0:2.14-1.f 100% | 76.2 MiB/s | 156.0 KiB | 00m00s [118/157] Installing json-c-0:0.18-1.fc 100% | 66.8 MiB/s | 136.8 KiB | 00m00s [119/157] Installing xxhash-libs-0:0.8. 100% | 104.2 MiB/s | 213.3 KiB | 00m00s [120/157] Installing libnghttp2-0:1.64. 100% | 106.5 MiB/s | 327.2 KiB | 00m00s [121/157] Installing libbrotli-0:1.1.0- 100% | 118.4 MiB/s | 969.9 KiB | 00m00s [122/157] Installing libtool-ltdl-0:2.5 100% | 45.5 MiB/s | 93.1 KiB | 00m00s [123/157] Installing openldap-0:2.6.8-6 100% | 107.2 MiB/s | 878.5 KiB | 00m00s [124/157] Installing libcurl-0:8.11.1-2 100% | 126.7 MiB/s | 1.0 MiB | 00m00s [125/157] Installing elfutils-debuginfo 100% | 46.6 MiB/s | 143.2 KiB | 00m00s [126/157] Installing binutils-0:2.43.50 100% | 167.3 MiB/s | 31.0 MiB | 00m00s [127/157] Installing elfutils-0:0.192-7 100% | 162.3 MiB/s | 3.4 MiB | 00m00s [128/157] Installing gdb-minimal-0:15.2 100% | 162.4 MiB/s | 15.1 MiB | 00m00s [129/157] Installing debugedit-0:5.1-2. 100% | 100.3 MiB/s | 308.1 KiB | 00m00s [130/157] Installing curl-0:8.11.1-2.fc 100% | 33.7 MiB/s | 518.4 KiB | 00m00s [131/157] Installing rpm-0:4.20.0-1.fc4 100% | 81.9 MiB/s | 3.4 MiB | 00m00s [132/157] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [133/157] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [134/157] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [135/157] Installing rust-srpm-macros-0 100% | 5.4 MiB/s | 5.6 KiB | 00m00s [136/157] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [137/157] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [138/157] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [139/157] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.0 KiB | 00m00s [140/157] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [141/157] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [142/157] Installing kernel-srpm-macros 100% | 2.3 MiB/s | 2.3 KiB | 00m00s [143/157] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [144/157] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [145/157] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [146/157] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [147/157] Installing fonts-srpm-macros- 100% | 27.8 MiB/s | 57.0 KiB | 00m00s [148/157] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [149/157] Installing go-srpm-macros-0:3 100% | 30.3 MiB/s | 62.0 KiB | 00m00s [150/157] Installing python-srpm-macros 100% | 25.5 MiB/s | 52.2 KiB | 00m00s [151/157] Installing redhat-rpm-config- 100% | 31.4 MiB/s | 193.2 KiB | 00m00s [152/157] Installing rpm-build-0:4.20.0 100% | 139.6 MiB/s | 1.4 MiB | 00m00s [153/157] Installing pyproject-srpm-mac 100% | 834.6 KiB/s | 2.5 KiB | 00m00s [154/157] Installing util-linux-0:2.40. 100% | 172.6 MiB/s | 17.3 MiB | 00m00s [155/157] Installing authselect-0:1.5.0 100% | 36.0 MiB/s | 184.2 KiB | 00m00s [156/157] Installing which-0:2.21-42.fc 100% | 81.5 MiB/s | 250.2 KiB | 00m00s [157/157] Installing info-0:7.1.1-2.fc4 100% | 240.1 KiB/s | 741.9 KiB | 00m03s Warning: skipped OpenPGP checks for 67 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.ppc64le alternatives-1.31-1.fc42.ppc64le ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc42.ppc64le authselect-1.5.0-8.fc42.ppc64le authselect-libs-1.5.0-8.fc42.ppc64le basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.ppc64le binutils-2.43.50-9.fc42.ppc64le build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc42.ppc64le bzip2-libs-1.0.8-19.fc42.ppc64le ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch coreutils-9.5-11.fc42.ppc64le coreutils-common-9.5-11.fc42.ppc64le cpio-2.15-2.fc41.ppc64le cracklib-2.9.11-6.fc42.ppc64le crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.ppc64le cyrus-sasl-lib-2.1.28-27.fc41.ppc64le debugedit-5.1-2.fc42.ppc64le diffutils-3.10-8.fc42.ppc64le dwz-0.15-8.fc42.ppc64le ed-1.20.2-2.fc41.ppc64le efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.ppc64le elfutils-debuginfod-client-0.192-7.fc42.ppc64le elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.ppc64le elfutils-libs-0.192-7.fc42.ppc64le fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.11.noarch fedora-release-common-42-0.11.noarch fedora-release-identity-basic-42-0.11.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.ppc64le file-libs-5.45-8.fc42.ppc64le filesystem-3.18-29.fc42.ppc64le filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc42.ppc64le fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.ppc64le gdb-minimal-15.2-4.fc42.ppc64le gdbm-1.23-7.fc41.ppc64le gdbm-libs-1.23-7.fc41.ppc64le ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-24.fc42.ppc64le glibc-common-2.40.9000-24.fc42.ppc64le glibc-gconv-extra-2.40.9000-24.fc42.ppc64le glibc-minimal-langpack-2.40.9000-24.fc42.ppc64le gmp-6.3.0-2.fc41.ppc64le gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc42.ppc64le gzip-1.13-2.fc42.ppc64le info-7.1.1-2.fc42.ppc64le jansson-2.14-1.fc42.ppc64le json-c-0.18-1.fc42.ppc64le kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc42.ppc64le krb5-libs-1.21.3-3.fc42.ppc64le libacl-2.3.2-2.fc42.ppc64le libarchive-3.7.7-1.fc42.ppc64le libattr-2.5.2-4.fc41.ppc64le libblkid-2.40.2-8.fc42.ppc64le libbrotli-1.1.0-5.fc42.ppc64le libcap-2.71-1.fc42.ppc64le libcap-ng-0.8.5-3.fc42.ppc64le libcom_err-1.47.1-6.fc42.ppc64le libcurl-8.11.1-2.fc42.ppc64le libeconf-0.7.5-1.fc42.ppc64le libevent-2.1.12-14.fc42.ppc64le libfdisk-2.40.2-8.fc42.ppc64le libffi-3.4.6-3.fc42.ppc64le libgcc-15.0.0-0.2.fc42.ppc64le libgomp-15.0.0-0.2.fc42.ppc64le libidn2-2.3.7-2.fc42.ppc64le libmount-2.40.2-8.fc42.ppc64le libnghttp2-1.64.0-1.fc42.ppc64le libpkgconf-2.3.0-1.fc42.ppc64le libpsl-0.21.5-4.fc42.ppc64le libpwquality-1.4.5-11.fc42.ppc64le librtas-2.0.6-2.fc41.ppc64le libselinux-3.8-0.rc3.1.fc42.ppc64le libsemanage-3.8-0.rc3.1.fc42.ppc64le libsepol-3.8-0.rc3.1.fc42.ppc64le libsmartcols-2.40.2-8.fc42.ppc64le libssh-0.11.1-1.fc42.ppc64le libssh-config-0.11.1-1.fc42.noarch libstdc++-15.0.0-0.2.fc42.ppc64le libtasn1-4.19.0-9.fc42.ppc64le libtirpc-1.3.6-1.fc42.ppc64le libtool-ltdl-2.5.4-1.fc42.ppc64le libunistring-1.1-8.fc42.ppc64le libuuid-2.40.2-8.fc42.ppc64le libverto-0.3.2-9.fc41.ppc64le libxcrypt-4.4.36-12.fc42.ppc64le libxml2-2.12.8-2.fc42.ppc64le libzstd-1.5.6-2.fc41.ppc64le lua-libs-5.4.7-1.fc42.ppc64le lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc42.ppc64le mpfr-4.2.1-5.fc42.ppc64le ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.ppc64le ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.ppc64le openssl-libs-3.2.2-8.fc42.ppc64le p11-kit-0.25.5-4.fc42.ppc64le p11-kit-trust-0.25.5-4.fc42.ppc64le package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.ppc64le pam-libs-1.7.0-3.fc42.ppc64le patch-2.7.6-25.fc42.ppc64le pcre2-10.44-1.fc42.1.ppc64le pcre2-syntax-10.44-1.fc42.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.ppc64le pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.ppc64le popt-1.19-7.fc42.ppc64le publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.ppc64le redhat-rpm-config-300-1.no_annobin.0.fc42.noarch rpm-4.20.0-1.fc42.ppc64le rpm-build-4.20.0-1.fc42.ppc64le rpm-build-libs-4.20.0-1.fc42.ppc64le rpm-libs-4.20.0-1.fc42.ppc64le rpm-sequoia-1.7.0-3.fc42.ppc64le rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.ppc64le setup-2.15.0-5.fc41.noarch shadow-utils-4.17.0~rc1-1.fc42.ppc64le sqlite-libs-3.47.2-1.fc42.ppc64le systemd-libs-257.1-1.fc42.ppc64le tar-1.35-4.fc41.ppc64le unzip-6.0-65.fc42.ppc64le util-linux-2.40.2-8.fc42.ppc64le util-linux-core-2.40.2-8.fc42.ppc64le which-2.21-42.fc41.ppc64le xxhash-libs-0.8.2-4.fc42.ppc64le xz-5.6.3-2.fc42.ppc64le xz-libs-5.6.3-2.fc42.ppc64le zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.ppc64le zlib-ng-compat-2.2.2-1.fc42.ppc64le zstd-1.5.6-2.fc41.ppc64le Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-pysam-0.22.1-2.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1734901898.014894/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-foik8nl9/python-pysam/python-pysam.spec) Config(child) 0 minutes 27 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/python-pysam-0.22.1-2.fc42.src.rpm) Config(fedora-rawhide-ppc64le) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1734901898.014894/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1734901898.014894/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1734901898.014894/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.ppc64le rpm-sequoia-1.7.0-3.fc42.ppc64le dnf5-5.2.8.1-2.fc42.ppc64le dnf5-plugins-5.2.8.1-2.fc42.ppc64le Finish: chroot init Start: build phase for python-pysam-0.22.1-2.fc42.src.rpm Start: build setup for python-pysam-0.22.1-2.fc42.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1721347200 Wrote: /builddir/build/SRPMS/python-pysam-0.22.1-2.fc42.src.rpm Updating and loading repositories: fedora 100% | 103.5 KiB/s | 4.1 KiB | 00m00s Additional repo https_fedorapeople_org 100% | 16.4 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 25.6 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: bzip2-devel ppc64le 1.0.8-19.fc42 copr_base 309.8 KiB gcc ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 96.5 MiB python3-cython ppc64le 3.0.11-1.fc41 fedora 20.4 MiB python3-devel ppc64le 3.13.1-2.fc42 fedora 1.8 MiB python3-setuptools noarch 74.1.3-4.fc42 fedora 8.4 MiB python3-sphinx noarch 1:7.3.7-2.fc41 fedora 10.8 MiB python3-sphinx_rtd_theme noarch 3.0.2-1.fc42 fedora 327.3 KiB xz-devel ppc64le 1:5.6.3-2.fc42 fedora 255.6 KiB zlib-ng-compat-devel ppc64le 2.2.2-1.fc42 fedora 106.8 KiB Installing dependencies: annobin-docs noarch 12.79-1.fc42 copr_base 98.6 KiB annobin-plugin-gcc ppc64le 12.79-1.fc42 copr_base 997.1 KiB cmake-filesystem ppc64le 3.31.2-1.fc42 copr_base 0.0 B cpp ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 34.5 MiB expat ppc64le 2.6.4-1.fc42 copr_base 343.2 KiB fontawesome4-fonts noarch 1:4.7.0-23.fc41 fedora 296.6 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B gcc-plugin-annobin ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 67.4 KiB glibc-devel ppc64le 2.40.9000-24.fc42 copr_base 2.6 MiB google-roboto-slab-fonts noarch 1.100263-0.24.20150923git.fc41 fedora 699.6 KiB kernel-headers ppc64le 6.13.0-0.rc3.29.fc42 fedora 6.5 MiB lato-fonts noarch 2.015-22.fc41 fedora 11.3 MiB libasan ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 2.1 MiB libatomic ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 65.8 KiB libb2 ppc64le 0.98.1-12.fc42 copr_base 72.6 KiB libmpc ppc64le 1.3.1-6.fc42 copr_base 278.0 KiB libubsan ppc64le 15.0.0-0.2.fc42 https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 652.6 KiB libxcrypt-devel ppc64le 4.4.36-12.fc42 fedora 30.5 KiB make ppc64le 1:4.4.1-9.fc42 copr_base 1.9 MiB mpdecimal ppc64le 2.5.1-16.fc42 copr_base 259.9 KiB pyproject-rpm-macros noarch 1.16.3-1.fc42 fedora 113.7 KiB python-pip-wheel noarch 24.3.1-1.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 ppc64le 3.13.1-2.fc42 fedora 82.5 KiB python3-babel noarch 2.16.0-1.fc42 fedora 28.3 MiB python3-charset-normalizer noarch 3.4.0-1.fc42 fedora 319.9 KiB python3-docutils noarch 0.21.2-1.fc42 fedora 4.9 MiB python3-idna noarch 3.10-1.fc42 fedora 628.0 KiB python3-imagesize noarch 1.4.1-9.fc41 fedora 35.3 KiB python3-jinja2 noarch 3.1.4-5.fc41 fedora 2.9 MiB python3-libs ppc64le 3.13.1-2.fc42 fedora 42.8 MiB python3-markupsafe ppc64le 3.0.2-1.fc42 copr_base 110.7 KiB python3-packaging noarch 24.2-2.fc42 fedora 555.7 KiB python3-pygments noarch 2.18.0-2.fc42 fedora 10.6 MiB python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-snowballstemmer noarch 2.2.0-13.fc41 fedora 1.7 MiB python3-sphinx-theme-alabaster noarch 0.7.16-6.fc41 fedora 41.9 KiB python3-sphinxcontrib-jquery noarch 4.1-9.fc41 fedora 381.8 KiB python3-urllib3 noarch 2.2.3-3.fc42 fedora 1.0 MiB tzdata noarch 2024b-1.fc42 fedora 1.6 MiB Transaction Summary: Installing: 51 packages Total size of inbound packages is 85 MiB. Need to download 22 MiB. After this operation, 299 MiB extra will be used (install 299 MiB, remove 0 B). [1/1] python3-devel-0:3.13.1-2.fc42.ppc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] python3-setuptools-0:74.1.3-4.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [2/7] zlib-ng-compat-devel-0:2.2.2-1.fc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [3/9] gcc-0:15.0.0-0.2.fc42.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 4/10] python3-0:3.13.1-2.fc42.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 5/11] python3-libs-0:3.13.1-2.fc42.pp 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 6/20] python3-packaging-0:24.2-2.fc42 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 7/25] cpp-0:15.0.0-0.2.fc42.ppc64le 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 8/26] python-pip-wheel-0:24.3.1-1.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded [ 9/27] 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python3-sphinx_rtd_theme-0:3.0. 100% | 343.7 KiB/s | 86.3 KiB | 00m00s [31/51] xz-devel-1:5.6.3-2.fc42.ppc64le 100% | 977.7 KiB/s | 66.5 KiB | 00m00s [32/51] bzip2-devel-0:1.0.8-19.fc42.ppc 100% | 2.2 MiB/s | 214.1 KiB | 00m00s [33/51] fontawesome4-fonts-1:4.7.0-23.f 100% | 1.7 MiB/s | 204.5 KiB | 00m00s [34/51] google-roboto-slab-fonts-0:1.10 100% | 2.8 MiB/s | 239.0 KiB | 00m00s [35/51] python3-sphinx-1:7.3.7-2.fc41.n 100% | 4.1 MiB/s | 2.6 MiB | 00m01s [36/51] python3-cython-0:3.0.11-1.fc41. 100% | 5.9 MiB/s | 3.9 MiB | 00m01s [37/51] python3-sphinxcontrib-jquery-0: 100% | 1.5 MiB/s | 114.0 KiB | 00m00s [38/51] python3-docutils-0:0.21.2-1.fc4 100% | 9.6 MiB/s | 1.1 MiB | 00m00s [39/51] python3-imagesize-0:1.4.1-9.fc4 100% | 211.0 KiB/s | 22.2 KiB | 00m00s [40/51] lato-fonts-0:2.015-22.fc41.noar 100% | 9.2 MiB/s | 3.1 MiB | 00m00s [41/51] python3-jinja2-0:3.1.4-5.fc41.n 100% | 4.5 MiB/s | 492.8 KiB | 00m00s [42/51] python3-requests-0:2.32.3-3.fc4 100% | 3.7 MiB/s | 159.4 KiB | 00m00s 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103.8 MiB/s | 2.9 MiB | 00m00s [43/53] Installing python3-sphinx-1:7.3 100% | 84.9 MiB/s | 11.0 MiB | 00m00s [44/53] Installing python3-sphinxcontri 100% | 75.2 MiB/s | 385.0 KiB | 00m00s [45/53] Installing python3-sphinx_rtd_t 100% | 24.3 MiB/s | 348.0 KiB | 00m00s [46/53] Installing python3-devel-0:3.13 100% | 58.6 MiB/s | 1.8 MiB | 00m00s [47/53] Installing python3-cython-0:3.0 100% | 131.8 MiB/s | 20.6 MiB | 00m00s [48/53] Installing python3-setuptools-0 100% | 80.0 MiB/s | 8.6 MiB | 00m00s [49/53] Installing gcc-plugin-annobin-0 100% | 3.7 MiB/s | 69.0 KiB | 00m00s [50/53] Installing annobin-plugin-gcc-0 100% | 42.4 MiB/s | 998.8 KiB | 00m00s [51/53] Installing zlib-ng-compat-devel 100% | 52.9 MiB/s | 108.3 KiB | 00m00s [52/53] Installing bzip2-devel-0:1.0.8- 100% | 151.7 MiB/s | 310.7 KiB | 00m00s [53/53] Installing xz-devel-1:5.6.3-2.f 100% | 1.2 MiB/s | 259.4 KiB | 00m00s Warning: skipped OpenPGP checks for 17 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch Complete! Finish: build setup for python-pysam-0.22.1-2.fc42.src.rpm Start: rpmbuild python-pysam-0.22.1-2.fc42.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1721347200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.0xyQgV + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + test -d /builddir/build/BUILD/python-pysam-0.22.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pysam-0.22.1-build + /usr/bin/rm -rf /builddir/build/BUILD/python-pysam-0.22.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DBW78Y + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + cd /builddir/build/BUILD/python-pysam-0.22.1-build + rm -rf pysam-0.22.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/pysam-0.22.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pysam-0.22.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/python-pysam-configure-c99.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rf pysam.egg-info ++ grep -rl '/\* Generated by Cython' + rm pysam/libcalignedsegment.c pysam/libcalignmentfile.c pysam/libcbcf.c pysam/libcbcftools.c pysam/libcbgzf.c pysam/libcfaidx.c pysam/libchtslib.c pysam/libcsamfile.c pysam/libcsamtools.c pysam/libctabix.c pysam/libctabixproxies.c pysam/libcutils.c pysam/libcvcf.c + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.pB7jiZ + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.22.1 + FORCE_CYTHON=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for ssse3... none checking C compiler flags needed for popcnt... none checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for ssse3... none checking C compiler flags needed for popcnt... none checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for library containing regcomp... configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_bundled.mk to htscodecs.mk # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running build running build_py creating build creating build/lib.linux-ppc64le-cpython-313 creating build/lib.linux-ppc64le-cpython-313/pysam copying pysam/Pileup.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/__init__.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/bcftools.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/samtools.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/utils.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/version.py -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/config.py -> build/lib.linux-ppc64le-cpython-313/pysam creating build/lib.linux-ppc64le-cpython-313/pysam/include copying pysam/include/__init__.py -> build/lib.linux-ppc64le-cpython-313/pysam/include running egg_info creating pysam.egg-info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt writing manifest file 'pysam.egg-info/SOURCES.txt' reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.cram' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.cram' to be distributed and are already explicitly excluding 'pysam.include.htslib.cram' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.m4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.m4' to be distributed and are already explicitly excluding 'pysam.include.htslib.m4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.os' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.os' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.os' to be distributed and are already explicitly excluding 'pysam.include.htslib.os' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.13/site-packages/setuptools/command/build_py.py:218: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/cbcftools_util.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/csamtools_util.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/htslib_util.c -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/htslib_util.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignedsegment.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignedsegment.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignedsegment.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignmentfile.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignmentfile.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcalignmentfile.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcf.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcf.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcf.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcftools.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcftools.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbcftools.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbgzf.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcbgzf.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcfaidx.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcfaidx.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcfaidx.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libchtslib.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libchtslib.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libchtslib.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamfile.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamfile.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamfile.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamtools.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamtools.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcsamtools.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabix.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabix.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabix.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabixproxies.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabixproxies.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libctabixproxies.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcutils.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcutils.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcutils.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcvcf.pxd -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcvcf.pyi -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/libcvcf.pyx -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/py.typed -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/pysam_stream.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/pysam_util.c -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/pysam_util.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/version.h -> build/lib.linux-ppc64le-cpython-313/pysam copying pysam/version.pyi -> build/lib.linux-ppc64le-cpython-313/pysam creating build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/LICENSE -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/README -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/amplicon_stats.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam2depth.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_addrprg.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_ampliconclip.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_ampliconclip.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_aux.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_cat.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_color.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_consensus.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_fastq.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_flags.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_import.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_index.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_lpileup.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_lpileup.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_markdup.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_mate.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_md.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_plbuf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_plbuf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_plcmd.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_quickcheck.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_reheader.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_rmdup.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_rmdupse.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_samples.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_sort.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_split.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_stat.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bamshuf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bamtk.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bedcov.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bedidx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/bedidx.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/consensus_pileup.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/consensus_pileup.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/coverage.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/coverage.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/cram_size.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/cut_target.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/dict.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/dict.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/faidx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/faidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/padding.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/padding.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/phase.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/phase.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/reference.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/reference.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/reset.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/reset.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_opts.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_opts.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_utils.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_utils.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_view.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sample.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sample.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/sample.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/samtools.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/samtools.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/samtools.pysam.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/splaysort.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/stats.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/stats.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/stats_isize.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/stats_isize.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/tmp_file.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/tmp_file.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools copying samtools/version.sh -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools creating build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4 copying samtools/config.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/samtools creating build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/HMM.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/HMM.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/LICENSE -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/README -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/abuf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/abuf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam_sample.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bam_sample.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bcftools.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bin.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/bin.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/call.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/ccall.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/cigar_state.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/cols.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/cols.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/consensus.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/convert.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/convert.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/csq.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/dbuf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/dist.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/dist.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/em.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/em.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/extsort.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/extsort.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/filter.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/filter.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gff.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gff.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gvcf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/gvcf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/hclust.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/hclust.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/hex.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/khash_str2str.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/kheap.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/kmin.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/kmin.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/main.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/main.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/mcall.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/mpileup.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/mw.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/ploidy.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/ploidy.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/prob1.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/prob1.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/rbuf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/read_consensus.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/read_consensus.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/regidx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/regidx.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/reheader.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/smpl_ilist.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/smpl_ilist.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/str_finder.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/str_finder.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/tabix.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/tsv2vcf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/tsv2vcf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/utlist.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/variantkey.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfannotate.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfbuf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfbuf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfcall.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfcnv.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfconcat.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfconvert.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcffilter.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfhead.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfindex.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfisec.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfmerge.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfnorm.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfplugin.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfquery.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfroh.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfsom.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfsort.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfstats.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfview.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcmp.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/vcmp.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/version.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/version.c.pysam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/version.sh -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools copying bcftools/config.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/LICENSE -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/Makefile -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/README -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/bcf_sr_sort.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/bcf_sr_sort.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/bgzf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/bgzip.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/builddir_vars.mk.in -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/config.h.in -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/config.mk.in -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/configure -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/configure.ac -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/errmod.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/faidx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/header.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/header.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile_gcs.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile_internal.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile_libcurl.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile_s3.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hfile_s3_write.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hts.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hts_expr.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hts_internal.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hts_os.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/hts_time_funcs.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htscodecs_bundled.mk -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htscodecs_external.mk -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htsfile.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htslib.mk -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htslib.pc.in -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/htslib_vars.mk -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/kfunc.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/kstring.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/md5.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/multipart.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/plugin.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/probaln.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/realn.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/regidx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/region.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/sam.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/sam_internal.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/sam_mods.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/synced_bcf_reader.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/tabix.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/tbx.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/textutils.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/textutils_internal.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/thread_pool.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/thread_pool_internal.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/vcf.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/vcf_sweep.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/vcfutils.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib copying htslib/version.sh -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_codecs.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_codecs.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_decode.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_decode.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_encode.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_encode.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_external.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_index.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_index.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_io.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_io.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_samtools.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_stats.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_stats.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/cram_structs.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/mFILE.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/mFILE.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/misc.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/open_trace_file.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/open_trace_file.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/os.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/string_alloc.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram copying htslib/cram/string_alloc.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4 copying htslib/m4/pkg.m4 -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4 creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/os copying htslib/os/lzma_stub.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/os copying htslib/os/rand.c -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/os copying htslib/config.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib creating build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/bgzf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/cram.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/faidx.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hfile.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts_defs.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts_endian.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts_expr.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts_log.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/hts_os.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/kbitset.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/kfunc.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/khash.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/khash_str2int.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/klist.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/knetfile.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/kroundup.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/kseq.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/ksort.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/kstring.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/regidx.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/sam.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/tbx.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/thread_pool.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/vcf.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/vcf_sweep.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib copying htslib/htslib/vcfutils.h -> build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib running build_ext creating htslib/config_vars.h for 'pysam.libchtslib' extension building 'libhts.a' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.18"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o ranlib libhts.a Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension creating build/temp.linux-ppc64le-cpython-313 creating build/temp.linux-ppc64le-cpython-313/pysam gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/htslib_util.c -o build/temp.linux-ppc64le-cpython-313/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libchtslib.c -o build/temp.linux-ppc64le-cpython-313/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libchtslib.c:2954:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2954 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/htslib_util.o build/temp.linux-ppc64le-cpython-313/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-ppc64le-cpython-313/pysam/libchtslib.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-ppc64le-cpython-313/samtools creating build/temp.linux-ppc64le-cpython-313/samtools/lz4 gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcsamtools.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_color.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_import.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_index.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_md.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_split.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bamtk.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bedcov.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/bedidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/coverage.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/cram_size.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/cut_target.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/dict.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/faidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/lz4/lz4.c -o build/temp.linux-ppc64le-cpython-313/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/padding.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/phase.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/reference.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/reset.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/sam_view.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/samtools.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/stats.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcsamtools.o build/temp.linux-ppc64le-cpython-313/samtools/amplicon_stats.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam2depth.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_addrprg.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_aux.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_cat.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_color.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_fastq.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_flags.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_import.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_index.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_lpileup.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_markdup.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_mate.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_md.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_plbuf.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_plcmd.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_quickcheck.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_reheader.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_rmdup.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_rmdupse.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_samples.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_sort.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_split.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bam_stat.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bamshuf.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bamtk.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bedcov.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/bedidx.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/consensus_pileup.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/coverage.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/cram_size.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/cut_target.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/dict.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/faidx.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/lz4/lz4.o build/temp.linux-ppc64le-cpython-313/samtools/padding.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/phase.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/reference.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/reset.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/sam_opts.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/sam_utils.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/sam_view.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/sample.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/samtools.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/stats.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/stats_isize.c.pysam.o build/temp.linux-ppc64le-cpython-313/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcsamtools.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-ppc64le-cpython-313/bcftools gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/HMM.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/abuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bcftools.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/bin.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/ccall.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/cols.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/convert.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/csq.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/dist.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/em.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/extsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/filter.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/gff.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/hclust.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/kmin.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/main.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/mcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/prob1.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/regidx.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/reheader.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/tabix.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: bcftools/vcfmerge.c.pysam.c:860:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 860 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib/htslib/kstring.h:30, from /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib/htslib/hts.h:37, from /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib/htslib/vcf.h:39, from bcftools/vcfmerge.c.pysam.c:35: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ bcftools/vcfmerge.c.pysam.c:866:27: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 866 | ma->buf = (buffer_t*) calloc(ma->n,sizeof(buffer_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c bcftools/version.c.pysam.c -o build/temp.linux-ppc64le-cpython-313/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcbcftools.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/bcftools/HMM.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/abuf.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bam_sample.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bcftools.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/bin.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/ccall.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/cols.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/consensus.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/convert.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/csq.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/dist.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/em.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/extsort.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/filter.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/gff.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/gvcf.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/hclust.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/kmin.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/main.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/mcall.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/mpileup.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/ploidy.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/prob1.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/read_consensus.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/regidx.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/reheader.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/smpl_ilist.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/str_finder.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/tabix.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/tsv2vcf.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfannotate.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfbuf.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfcall.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfcnv.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfconcat.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfconvert.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcffilter.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfhead.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfindex.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfisec.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfmerge.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfnorm.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfplugin.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfquery.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfroh.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfsom.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfsort.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfstats.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcfview.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/vcmp.c.pysam.o build/temp.linux-ppc64le-cpython-313/bcftools/version.c.pysam.o build/temp.linux-ppc64le-cpython-313/pysam/libcbcftools.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcbcftools.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: bcftools/vcfmerge.c.pysam.c:860:34: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 860 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ bcftools/vcfmerge.c.pysam.c:866:27: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 866 | ma->buf = (buffer_t*) calloc(ma->n,sizeof(buffer_t)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcutils.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcutils.c:2475:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2475 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/pysam_util.c -o build/temp.linux-ppc64le-cpython-313/pysam/pysam_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcutils.o build/temp.linux-ppc64le-cpython-313/pysam/pysam_util.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcsamtools.cpython-313-powerpc64le-linux-gnu -lcbcftools.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcutils.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignmentfile.pyx:2567:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2572:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2577:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2616:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2621:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation warning: pysam/libcalignmentfile.pyx:2626:49: Casting a GIL-requiring function into a nogil function circumvents GIL validation Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcalignmentfile.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignmentfile.c:3788:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3788 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_pf_5pysam_17libcalignmentfile_13AlignmentFile_6_open’: pysam/libcalignmentfile.c:20536:20: warning: ignoring return value of ‘sam_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 20536 | (void)(sam_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_hdr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcalignmentfile.c: In function ‘__pyx_f_5pysam_17libcalignmentfile_20IteratorRowSelection_cnext’: pysam/libcalignmentfile.c:37172:16: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 37172 | (void)(bgzf_seek(hts_get_bgzfp(__pyx_v_self->__pyx_base.htsfile), __pyx_v_pos, 0)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcalignmentfile.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcalignmentfile.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcsamfile.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcsamfile.c:3299:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3299 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcsamfile.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcsamfile.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcalignedsegment.pyx:760:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: pysam/libcalignedsegment.pyx:760:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcalignedsegment.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcalignedsegment.c:4307:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4307 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcalignedsegment.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcalignedsegment.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libctabix.c -o build/temp.linux-ppc64le-cpython-313/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabix.c:3569:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3569 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libctabix.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libctabix.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcfaidx.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcfaidx.c:3033:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3033 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcfaidx.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcfaidx.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcbcf.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbcf.c:4116:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 4116 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_f_5pysam_7libcbcf_11VariantFile_write’: pysam/libcbcf.c:85929:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 85929 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_6close’: pysam/libcbcf.c:80605:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80605 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_13VariantHeader_20add_meta’: pysam/libcbcf.c:44314:11: warning: ignoring return value of ‘bcf_hrec_add_key’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44314 | bcf_hrec_add_key(__pyx_v_hrec, __pyx_t_17, ((int)__pyx_t_18)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c:44340:11: warning: ignoring return value of ‘bcf_hrec_set_val’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 44340 | bcf_hrec_set_val(__pyx_v_hrec, (__pyx_v_hrec->nkeys - 1), __pyx_t_19, ((int)__pyx_t_18), __pyx_v_quoted); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcbcf.c: In function ‘__pyx_pf_5pysam_7libcbcf_11VariantFile_4__dealloc__’: pysam/libcbcf.c:80300:18: warning: ignoring return value of ‘bcf_hdr_write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80300 | (void)(bcf_hdr_write(__pyx_v_self->__pyx_base.htsfile, __pyx_v_self->header->ptr)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcbcf.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcbcf.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcbgzf.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcbgzf.c:2485:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2485 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcbgzf.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcbgzf.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libctabixproxies.c -o build/temp.linux-ppc64le-cpython-313/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libctabixproxies.c:3089:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3089 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libctabixproxies.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libctabixproxies.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1083:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools -I/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -I/usr/include/python3.13 -c pysam/libcvcf.c -o build/temp.linux-ppc64le-cpython-313/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c:3698:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 3698 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.isra.0’: pysam/libcvcf.c:30040:16: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 30040 | __pyx_t_11 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_11)) __PYX_ERR(0, 873, __pyx_L1_error) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcvcf.c:24992:10: note: ‘__pyx_v_qual’ was declared here 24992 | double __pyx_v_qual; | ^~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC build/temp.linux-ppc64le-cpython-313/pysam/libcvcf.o -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/pysam -L/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -Lbuild/lib.linux-ppc64le-cpython-313/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-313-powerpc64le-linux-gnu -lcutils.cpython-313-powerpc64le-linux-gnu -o build/lib.linux-ppc64le-cpython-313/pysam/libcvcf.cpython-313-powerpc64le-linux-gnu.so -Wl,-rpath,$ORIGIN ++ echo /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/build/lib.linux-ppc64le-cpython-313 + PYTHONPATH=/builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/build/lib.linux-ppc64le-cpython-313 + sphinx-build-3 doc html Running Sphinx v7.3.7 making output directory... done [autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst loading intersphinx inventory from https://docs.python.org/3.13/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3.13/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.13/objects.inv (Caused by NameResolutionError(": Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] api reading sources... [ 22%] benchmarking reading sources... [ 33%] developer reading sources... [ 44%] faq reading sources... [ 56%] glossary reading sources... [ 67%] index reading sources... [ 78%] installation reading sources... [ 89%] release reading sources... [100%] usage looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 11%] api writing output... [ 22%] benchmarking writing output... [ 33%] developer writing output... [ 44%] faq writing output... [ 56%] glossary writing output... [ 67%] index writing output... [ 78%] installation writing output... [ 89%] release writing output... [100%] usage generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vtsinG + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + '[' /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build + mkdir /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.22.1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT --prefix /usr # pysam: cython is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for ssse3... none checking C compiler flags needed for popcnt... none checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether _XOPEN_SOURCE is declared... no checking C compiler flags needed for ssse3... none checking C compiler flags needed for popcnt... none checking C compiler flags needed for sse4.1... none checking C compiler flags needed for avx2... none checking C compiler flags needed for avx512f... none checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support checking for library containing regcomp... configure: WARNING: S3 support not enabled: requires libcurl support none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64 creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/Pileup.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/__init__.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/bcftools.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/samtools.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/utils.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/version.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/config.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include copying build/lib.linux-ppc64le-cpython-313/pysam/include/__init__.py -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/LICENSE -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/README -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/amplicon_stats.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/amplicon_stats.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam2depth.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam2depth.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_addrprg.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_addrprg.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_ampliconclip.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_ampliconclip.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_aux.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_aux.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_cat.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_cat.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_color.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_color.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_consensus.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_consensus.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_fastq.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_fastq.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_flags.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_flags.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_import.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_import.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_index.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_index.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_lpileup.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_lpileup.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_lpileup.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_markdup.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_markdup.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_mate.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_mate.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_md.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_md.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_plbuf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_plbuf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_plbuf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_plcmd.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_plcmd.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_quickcheck.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_quickcheck.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_reheader.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_reheader.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_rmdup.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_rmdup.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_rmdupse.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_rmdupse.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_samples.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_samples.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_sort.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_sort.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_split.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_split.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_stat.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bam_stat.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bamshuf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bamshuf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bamtk.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bamtk.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bedcov.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bedcov.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bedidx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bedidx.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/bedidx.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/consensus_pileup.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/consensus_pileup.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/consensus_pileup.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/coverage.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/coverage.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/cram_size.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/cram_size.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/cut_target.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/cut_target.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/dict.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/dict.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/faidx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/faidx.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/padding.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/padding.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/phase.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/phase.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/reference.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/reference.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/reset.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/reset.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_opts.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_opts.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_opts.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_utils.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_utils.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_utils.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_view.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sam_view.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sample.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sample.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/sample.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/samtools.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/samtools.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/samtools.pysam.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/splaysort.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/stats.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/stats.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/stats_isize.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/stats_isize.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/stats_isize.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/tmp_file.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/tmp_file.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/tmp_file.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/version.sh -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4/LICENSE -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4/lz4.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4/lz4.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/lz4/lz4.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools/lz4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/samtools/config.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/samtools creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/HMM.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/HMM.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/HMM.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/LICENSE -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/README -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/abuf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/abuf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/abuf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf_iaux.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf_indel.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam_sample.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam_sample.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bam_sample.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bcftools.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bcftools.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bcftools.pysam.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bin.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bin.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/bin.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/call.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/ccall.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/ccall.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/cigar_state.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/cols.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/cols.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/cols.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/consensus.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/consensus.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/convert.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/convert.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/convert.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/csq.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/csq.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/dbuf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/dist.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/dist.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/dist.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/em.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/em.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/extsort.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/extsort.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/extsort.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/filter.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/filter.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/filter.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gff.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gff.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gff.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gvcf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gvcf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/gvcf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/hclust.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/hclust.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/hclust.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/hex.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/khash_str2str.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/kheap.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/kmin.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/kmin.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/kmin.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/main.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/main.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/mcall.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/mcall.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/mpileup.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/mpileup.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/mw.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/ploidy.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/ploidy.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/ploidy.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/prob1.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/prob1.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/prob1.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/rbuf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/read_consensus.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/read_consensus.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/read_consensus.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/regidx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/regidx.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/regidx.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/reheader.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/reheader.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/smpl_ilist.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/smpl_ilist.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/smpl_ilist.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/str_finder.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/str_finder.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/str_finder.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/tabix.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/tabix.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/tsv2vcf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/tsv2vcf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/tsv2vcf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/utlist.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/variantkey.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfannotate.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfannotate.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfbuf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfbuf.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfbuf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfcall.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfcall.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfcnv.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfcnv.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfconcat.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfconcat.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfconvert.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfconvert.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcffilter.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcffilter.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfgtcheck.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfhead.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfhead.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfindex.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfindex.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfisec.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfisec.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfmerge.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfmerge.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfnorm.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfnorm.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfplugin.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfplugin.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfquery.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfquery.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfroh.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfroh.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfsom.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfsom.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfsort.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfsort.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfstats.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfstats.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfview.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcfview.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcmp.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcmp.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/vcmp.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/version.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/version.c.pysam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/version.sh -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools copying build/lib.linux-ppc64le-cpython-313/pysam/include/bcftools/config.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/bcftools creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/LICENSE -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/Makefile -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/README -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/bcf_sr_sort.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/bcf_sr_sort.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/bgzf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/bgzip.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/builddir_vars.mk.in -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/config.h.in -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/config.mk.in -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/configure -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/configure.ac -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/errmod.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/faidx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/header.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/header.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile_gcs.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile_internal.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile_libcurl.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile_s3.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hfile_s3_write.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hts.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hts_expr.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hts_internal.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hts_os.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/hts_time_funcs.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs_bundled.mk -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs_external.mk -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htsfile.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib.mk -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib.pc.in -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib_vars.mk -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/kfunc.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/kstring.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/md5.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/multipart.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/plugin.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/probaln.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/realn.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/regidx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/region.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/sam.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/sam_internal.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/sam_mods.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/synced_bcf_reader.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/tabix.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/tbx.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/textutils.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/textutils_internal.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/thread_pool.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/thread_pool_internal.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/vcf.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/vcf_sweep.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/vcfutils.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/version.sh -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_codecs.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_codecs.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_decode.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_decode.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_encode.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_encode.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_external.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_index.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_index.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_io.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_io.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_samtools.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_stats.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_stats.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/cram_structs.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/mFILE.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/mFILE.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/misc.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/open_trace_file.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/open_trace_file.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/os.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/pooled_alloc.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/pooled_alloc.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/string_alloc.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/cram/string_alloc.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/cram creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/pack.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/pack.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/permute.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rle.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/rle.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/utils.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/utils.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/varint.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htscodecs/htscodecs/version.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htscodecs/htscodecs creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/m4 copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/m4/pkg.m4 -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/m4 creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/os copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/os/lzma_stub.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/os copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/os/rand.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/os copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/config.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/bgzf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/cram.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/faidx.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hfile.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts_defs.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts_endian.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts_expr.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts_log.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/hts_os.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/kbitset.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/kfunc.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/khash.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/khash_str2int.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/klist.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/knetfile.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/kroundup.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/kseq.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/ksort.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/kstring.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/regidx.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/sam.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/synced_bcf_reader.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/tbx.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/thread_pool.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/vcf.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/vcf_sweep.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/include/htslib/htslib/vcfutils.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/htslib/htslib copying build/lib.linux-ppc64le-cpython-313/pysam/cbcftools_util.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/csamtools_util.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/htslib_util.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/htslib_util.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignedsegment.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignedsegment.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignedsegment.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignmentfile.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignmentfile.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignmentfile.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcf.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcf.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcf.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcftools.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcftools.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcftools.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbgzf.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbgzf.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcfaidx.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcfaidx.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcfaidx.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libchtslib.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libchtslib.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libchtslib.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamfile.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamfile.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamfile.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamtools.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamtools.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamtools.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabix.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabix.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabix.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabixproxies.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabixproxies.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabixproxies.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcutils.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcutils.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcutils.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcvcf.pxd -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcvcf.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcvcf.pyx -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/py.typed -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/pysam_stream.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/pysam_util.c -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/pysam_util.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/version.h -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/version.pyi -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libchtslib.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamtools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcftools.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcutils.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignmentfile.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcsamfile.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcalignedsegment.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabix.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcfaidx.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbcf.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcbgzf.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libctabixproxies.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam copying build/lib.linux-ppc64le-cpython-313/pysam/libcvcf.cpython-313-powerpc64le-linux-gnu.so -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam creating /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/__init__.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/utils.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/Pileup.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/samtools.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/config.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ copying build/lib.linux-ppc64le-cpython-313/pysam/__pycache__/version.cpython-313.pyc -> /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__ byte-compiling /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/bcftools.py to bcftools.cpython-313.pyc byte-compiling /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmplg_sy7sx.py' /usr/bin/python3 /tmp/tmplg_sy7sx.py removing /tmp/tmplg_sy7sx.py running install_egg_info running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' Copying pysam.egg-info to /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam-0.22.1-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/bin/__pycache__ + rm /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcalignedsegment.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcalignmentfile.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcbcf.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcbcftools.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcbgzf.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcfaidx.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libchtslib.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcsamfile.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcsamtools.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libctabix.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libctabixproxies.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcutils.pyx /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/libcvcf.pyx + rm /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/htslib_util.c /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/pysam_util.c + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.22.1-2.fc42 --unique-debug-suffix -0.22.1-2.fc42.ppc64le --unique-debug-src-base python-pysam-0.22.1-2.fc42.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-pysam-0.22.1-2.fc42.ppc64le find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.13/site-packages/pysam/include/samtools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.13/site-packages/pysam/include/bcftools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.13/site-packages/pysam/include/htslib/configure from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.13/site-packages/pysam/include/htslib/version.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/include/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/utils.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/Pileup.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/samtools.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/config.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/version.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/bcftools.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/pysam/__pycache__/Pileup.cpython-313.opt-1.pyc: replacing with normalized version Scanned 40 directories and 786 files, processed 9 inodes, 9 modified (2 replaced + 7 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-pysam-0.22.1-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-pysam-0.22.1-2.fc42.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GcKeDG + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + cd pysam-0.22.1 + DOCDIR=/builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/README.rst /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ImYLYC + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + cd pysam-0.22.1 + LICENSEDIR=/builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/COPYING /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/bcftools/LICENSE /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/htslib/LICENSE /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/samtools/LICENSE /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/licenses/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE Provides: bundled(bcftools) = 1.18 bundled(htslib) = 1.18 bundled(samtools) = 1.18 libcalignedsegment.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcalignmentfile.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcbcf.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcbcftools.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcbgzf.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcfaidx.cpython-313-powerpc64le-linux-gnu.so()(64bit) libchtslib.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcsamfile.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcsamtools.cpython-313-powerpc64le-linux-gnu.so()(64bit) libctabix.cpython-313-powerpc64le-linux-gnu.so()(64bit) libctabixproxies.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcutils.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcvcf.cpython-313-powerpc64le-linux-gnu.so()(64bit) python-pysam = 0.22.1-2.fc42 python3-pysam = 0.22.1-2.fc42 python3-pysam(ppc-64) = 0.22.1-2.fc42 python3.13-pysam = 0.22.1-2.fc42 python3.13dist(pysam) = 0.22.1 python3dist(pysam) = 0.22.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.2()(64bit) ld64.so.2(GLIBC_2.23)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcbcftools.cpython-313-powerpc64le-linux-gnu.so()(64bit) libchtslib.cpython-313-powerpc64le-linux-gnu.so()(64bit) libcsamtools.cpython-313-powerpc64le-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libz.so.1()(64bit) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-pysam < 0.22.1-2.fc42 Processing files: python3-pysam-devel-0.22.1-2.fc42.ppc64le Provides: python-pysam-devel = 0.22.1-2.fc42 python3-pysam-devel = 0.22.1-2.fc42 python3-pysam-devel(ppc-64) = 0.22.1-2.fc42 python3.13-pysam-devel = 0.22.1-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh python(abi) = 3.13 Processing files: python-pysam-doc-0.22.1-2.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.erak2j + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + cd pysam-0.22.1 + DOCDIR=/builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python-pysam-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python-pysam-doc + cp -pr /builddir/build/BUILD/python-pysam-0.22.1-build/pysam-0.22.1/html /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT/usr/share/doc/python-pysam-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pysam-doc = 0.22.1-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python-pysam-debugsource-0.22.1-2.fc42.ppc64le Provides: python-pysam-debugsource = 0.22.1-2.fc42 python-pysam-debugsource(ppc-64) = 0.22.1-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-pysam-debuginfo-0.22.1-2.fc42.ppc64le Provides: debuginfo(build-id) = 0d2cbffbfb84f14d7d819bda1e4a1ef953d86cf6 debuginfo(build-id) = 1371a4d94651653ac87c6d375b48ea3d34c14555 debuginfo(build-id) = 45374ce3dc16616fe200e9c0539cf905901ffd77 debuginfo(build-id) = 71b01043634e784c991aed0d9d89dd0d75c05260 debuginfo(build-id) = 74ff4b11311cbf4057f09f604e937cea4ac7a21b debuginfo(build-id) = 7d2503948142feff0ea5faa239943137b8bcae74 debuginfo(build-id) = 7f5d4a9f8770f84572a3b7fde77922dff04805b8 debuginfo(build-id) = 98673c1b814e2e5d932c6288df133b7e62d6fa7c debuginfo(build-id) = a5b07f792ec4e34262cb8e613bc5c02eed32579a debuginfo(build-id) = a734578262bde1b3eaf278e86dc2329494011095 debuginfo(build-id) = ce2576b9b5023bff7c1fa1a495df35d41f347785 debuginfo(build-id) = d04257778d6e952e139aa454976b2aebc37e7171 debuginfo(build-id) = ff095ab77d08d653bbe03a0026d4c99634ee078b libcalignedsegment.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcalignmentfile.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcbcf.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcbcftools.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcbgzf.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcfaidx.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libchtslib.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcsamfile.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcsamtools.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libctabix.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libctabixproxies.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcutils.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) libcvcf.cpython-313-powerpc64le-linux-gnu.so-0.22.1-2.fc42.ppc64le.debug()(64bit) python-pysam-debuginfo = 0.22.1-2.fc42 python3-pysam-debuginfo = 0.22.1-2.fc42 python3-pysam-debuginfo(ppc-64) = 0.22.1-2.fc42 python3.13-pysam-debuginfo = 0.22.1-2.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-pysam-debugsource(ppc-64) = 0.22.1-2.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pysam-0.22.1-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.22.1-2.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.22.1-2.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python3-pysam-devel-0.22.1-2.fc42.ppc64le.rpm Wrote: /builddir/build/RPMS/python-pysam-doc-0.22.1-2.fc42.noarch.rpm Wrote: /builddir/build/RPMS/python3-pysam-0.22.1-2.fc42.ppc64le.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.CmLDOn + umask 022 + cd /builddir/build/BUILD/python-pysam-0.22.1-build + test -d /builddir/build/BUILD/python-pysam-0.22.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-pysam-0.22.1-build + rm -rf /builddir/build/BUILD/python-pysam-0.22.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: File listed twice: /usr/share/licenses/python3-pysam/LICENSE File listed twice: /usr/share/licenses/python3-pysam/LICENSE Finish: rpmbuild python-pysam-0.22.1-2.fc42.src.rpm Finish: build phase for python-pysam-0.22.1-2.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1734901898.014894/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/python-pysam-0.22.1-2.fc42.src.rpm) Config(child) 10 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python-pysam", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "src" }, { "name": "python-pysam-debugsource", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "ppc64le" }, { "name": "python3-pysam-debuginfo", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "ppc64le" }, { "name": "python3-pysam", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "ppc64le" }, { "name": "python-pysam-doc", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "noarch" }, { "name": "python3-pysam-devel", "epoch": null, "version": "0.22.1", "release": "2.fc42", "arch": "ppc64le" } ] } RPMResults finished