## START: Set by rpmautospec ## (rpmautospec version 0.7.3) ## RPMAUTOSPEC: autorelease, autochangelog %define autorelease(e:s:pb:n) %{?-p:0.}%{lua: release_number = 10; base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}")); print(release_number + base_release_number - 1); }%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}} ## END: Set by rpmautospec %global desc %{expand: \ DIPY is a python library for the analysis of MR diffusion imaging. DIPY is for research only; please contact admins@dipy.org if you plan to deploy in clinical settings. Current information can always be found on the DIPY website: https://dipy.org/} # Full documentation downloads 100+MB of data, so we'd rather users look at the # upstream documentation %bcond docs 0 # There are a lot of tests and they take a while to complete. %bcond tests 1 %global forgeurl https://github.com/nipy/dipy/ Name: python-dipy Version: 1.9.0 Release: %autorelease Summary: Diffusion MRI Imaging in Python %global tag %{version} %forgemeta # SPDX License: BSD-3-Clause URL: https://dipy.org/ Source0: %forgesource # Replace deprecated alias for Python 3.13 # https://github.com/dipy/dipy/pull/3210 Patch: https://github.com/dipy/dipy/pull/3210.patch # BF: Fix attempting to delete frame local symbol table variable # https://github.com/dipy/dipy/pull/3293 # Backported to 1.9.0. Patch: dipy-1.9.0-pr-3293.patch BuildRequires: python3-devel BuildRequires: gcc-c++ %if %{with tests} BuildRequires: %{py3_dist pytest} %endif # Required for some modules but not in Fedora yet # BuildRequires: %%{py3_dist cvxpy} # Drop i686 # https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval ExcludeArch: %{ix86} %description %{desc} %package -n python3-dipy Summary: %{summary} Suggests: %{py3_dist ipython} %description -n python3-dipy %{desc} %package doc BuildArch: noarch Summary: %{summary} %description doc Documentation for %{name}. %prep %forgeautosetup -p1 # Correct interpreter for these---used in building docs and so on sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/docgen_cmd.py sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/build_modref_templates.py find tools/ -name "*.py" -exec sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' '{}' \; # Other shebangs and permission fixes for f in "dipy/stats/resampling.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" "dipy/reconst/msdki.py" "dipy/workflows/tests/test_stats.py" do chmod -x "$f" sed -i '/^#!\/usr\/bin\/env python/ d' "$f" sed -i '/^#!\/usr\/bin\/python/ d' "$f" done # Remove executable bit from examples chmod a-x doc/examples/*.py %generate_buildrequires %pyproject_buildrequires -w %build %pyproject_wheel %if %{with docs} pushd doc export PYTHONPATH=../build/ make SPHINXBUILD=sphinx-build-3 PYTHON=%{__python3} html rm -rf _build/html/.doctrees rm -rf _build/html/.buildinfo popd %endif %install %pyproject_install %pyproject_save_files dipy # Examples are installed in /usr/doc by the build backend. Let's fix that! mkdir -p %{buildroot}%{_docdir}/%{name}-doc mv %{buildroot}/usr/doc/dipy/examples %{buildroot}%{_docdir}/%{name}-doc/ %check %if %{with tests} # These tests appear to hang or are very slow k="${k-}${k+ and }not test_peaksFromModelParallel" k="${k-}${k+ and }not test_reconst_csa" k="${k-}${k+ and }not test_reconst_rumba" # Individual tests requiring network k="${k-}${k+ and }not test_syn_registration" k="${k-}${k+ and }not test_register_dwi_to_template" k="${k-}${k+ and }not test_affine_registration" k="${k-}${k+ and }not test_single_transforms" k="${k-}${k+ and }not test_register_series" k="${k-}${k+ and }not test_register_dwi_series_and_motion_correction" k="${k-}${k+ and }not test_streamline_registration" k="${k-}${k+ and }not test_register_dwi_series_multi_b0" k="${k-}${k+ and }not test_ptt_tracking" k="${k-}${k+ and }not test_io_fetch" k="${k-}${k+ and }not test_concatenate" k="${k-}${k+ and }not test_io_info" k="${k-}${k+ and }not test_concatenate_flow" k="${k-}${k+ and }not test_convert_tractogram_flow" # Test fails with pytest >= 8 k="${k-}${k+ and }not test_shore_fitting_no_constrain_e0" %ifarch s390x # https://github.com/dipy/dipy/issues/2886#issuecomment-2003567594 k="${k-}${k+ and }not test_bundlewarp" k="${k-}${k+ and }not test_bundlewarp_vector_filed" k="${k-}${k+ and }not test_bundle_shape_profile" %endif # Mimic what upstream does for testing mkdir test && pushd test ln -s ../pyproject.toml . # Ignore test scripts requiring network (for downloading test data) %pytest -c pyproject.toml -v --pyargs dipy \ --ignore=dipy/io/tests/test_stateful_tractogram.py \ --ignore=dipy/io/tests/test_streamline.py \ --ignore=dipy/io/tests/test_utils.py \ "${k:+-k $k}" %endif %files -n python3-dipy -f %{pyproject_files} %doc README.rst Changelog AUTHOR %license LICENSE %{_bindir}/dipy_align_affine %{_bindir}/dipy_align_syn %{_bindir}/dipy_apply_transform %{_bindir}/dipy_buan_lmm %{_bindir}/dipy_buan_profiles %{_bindir}/dipy_buan_shapes %{_bindir}/dipy_correct_motion %{_bindir}/dipy_denoise_lpca %{_bindir}/dipy_denoise_mppca %{_bindir}/dipy_denoise_nlmeans %{_bindir}/dipy_denoise_patch2self %{_bindir}/dipy_fetch %{_bindir}/dipy_fit_csa %{_bindir}/dipy_fit_csd %{_bindir}/dipy_fit_dki %{_bindir}/dipy_fit_dti %{_bindir}/dipy_fit_ivim %{_bindir}/dipy_fit_mapmri %{_bindir}/dipy_gibbs_ringing %{_bindir}/dipy_horizon %{_bindir}/dipy_info %{_bindir}/dipy_labelsbundles %{_bindir}/dipy_mask %{_bindir}/dipy_median_otsu %{_bindir}/dipy_recobundles %{_bindir}/dipy_reslice %{_bindir}/dipy_slr %{_bindir}/dipy_snr_in_cc %{_bindir}/dipy_track %{_bindir}/dipy_track_pft %{_bindir}/dipy_split %{_bindir}/dipy_bundlewarp %{_bindir}/dipy_evac_plus %{_bindir}/dipy_concatenate_tractograms %{_bindir}/dipy_convert_tensors %{_bindir}/dipy_convert_tractogram %{_bindir}/dipy_fit_dsi %{_bindir}/dipy_sh_convert_mrtrix %files doc %license LICENSE # Installed by package %{_docdir}/%{name}-doc %if %{with docs} %doc doc/_build/html %endif %changelog ## START: Generated by rpmautospec * Wed Sep 04 2024 Benjamin A. Beasley - 1.9.0-10 - Skip failing tests on s390x rather than excluding the architecture * Wed Sep 04 2024 Benjamin A. Beasley - 1.9.0-9 - Backport a proposed Python 3.13 fix (close RHBZ#2280596) * Fri Jul 19 2024 Fedora Release Engineering - 1.9.0-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sun Jun 09 2024 Python Maint - 1.9.0-7 - Rebuilt for Python 3.13 * Fri May 03 2024 Sandro - 1.9.0-6 - Change the way tests are run - Make tests work with pytest >= 8 (RHBZ#2278865) * Thu May 02 2024 Sandro - 1.9.0-5 - Fix compatability with Python 3.13 - Replace alias `warn` from logging (RHBZ#2278637) - Account for dedented docstrings * Mon Mar 18 2024 Sandro - 1.9.0-4 - Amend files section * Mon Mar 18 2024 Sandro - 1.9.0-3 - Amend list of tests requiring network * Mon Mar 18 2024 Sandro - 1.9.0-2 - Fix path * Mon Mar 18 2024 Packit - 1.9.0-1 - [packit] 1.9.0 upstream release - Resolves rhbz#2254667 * Mon Mar 18 2024 Sandro - 1.8.0-7 - Exclude s390x due to failing tests * Mon Mar 18 2024 Sandro - 1.8.0-6 - Fix Packit config * Sun Feb 25 2024 Sandro - 1.8.0-5 - Drop i686 - Move BRs to main package - Only `python-mne` depends on it. That's already excluding i686. * Sun Feb 25 2024 Sandro - 1.8.0-4 - Add packit config * Sun Feb 25 2024 Sandro - 1.8.0-3 - Migrate to SPDX license * Sun Feb 25 2024 Sandro - 1.8.0-2 - Use human friendly bcond * Sun Feb 25 2024 Sandro - 1.8.0-1 - Update to 1.8.0 (RHBZ#2254667) * Fri Jan 26 2024 Fedora Release Engineering - 1.7.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Mon Jan 22 2024 Fedora Release Engineering - 1.7.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Fri Jul 21 2023 Fedora Release Engineering - 1.7.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue Jul 18 2023 Sandro - 1.7.0-1 - Update to 1.7.0 (RHBZ#2161463) - Rebuild for Python3.12 (RHBZ#2220191) * Tue Jul 18 2023 Python Maint - 1.5.0-5 - Rebuilt for Python 3.12 * Fri Jan 20 2023 Fedora Release Engineering - 1.5.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Jul 22 2022 Fedora Release Engineering - 1.5.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Tue Jun 14 2022 Python Maint - 1.5.0-2 - Rebuilt for Python 3.11 * Wed May 11 2022 iztokf 1.5.0-1 - Update to the latest release * Fri Jan 21 2022 Fedora Release Engineering 1.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Sat Oct 02 2021 Ankur Sinha (Ankur Sinha Gmail) 1.4.1-1 - feat: update to 1.4.1 * Tue Jul 27 2021 Fedora Release Engineering 1.4.0-3 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint 1.4.0-2 - Rebuilt for Python 3.10 * Sun Mar 28 2021 Ankur Sinha (Ankur Sinha Gmail) 1.4.0-1 - enh: update to 1.4.0 * Wed Jan 27 2021 Fedora Release Engineering 1.3.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Sat Nov 28 2020 Ankur Sinha (Ankur Sinha Gmail) 1.3.0-1 - Update to 1.3.0 * Tue Oct 27 2020 Tomas Hrnciar 1.2.0-2 - Replace Python version glob with macro (needed for Python 3.10+) * Sun Sep 13 2020 Ankur Sinha (Ankur Sinha Gmail) 1.2.0-1 - Update to 1.2.0 * Wed Jul 29 2020 Fedora Release Engineering 1.1.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro Hrončok 1.1.1-2 - Rebuilt for Python 3.9 * Sat Feb 01 2020 Ankur Sinha (Ankur Sinha Gmail) 1.1.1-1 - Update to 1.1.1 * Thu Jan 30 2020 Fedora Release Engineering 1.0.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Oct 03 2019 Miro Hrončok 1.0.0-2 - Rebuilt for Python 3.8.0rc1 (#1748018) * Sat Aug 31 2019 Ankur Sinha (Ankur Sinha Gmail) 1.0.0-1 - Update to 1.0.0 * Mon Aug 19 2019 Miro Hrončok 0.16.0-4 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering 0.16.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jul 04 2019 Miro Hrončok 0.16.0-2 - Remove .0 from (Build)Requires * Mon Apr 08 2019 Ankur Sinha (Ankur Sinha Gmail) 0.16.0-1 - Update to latest new release * Sat Feb 02 2019 Fedora Release Engineering 0.15.0-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Tue Nov 27 2018 Ankur Sinha (Ankur Sinha Gmail) 0.15.0-4 - Mention requires explicitly * Mon Nov 19 2018 Ankur Sinha (Ankur Sinha Gmail) 0.15.0-3 - Disable absent python3-vtk dep * Mon Nov 19 2018 Ankur Sinha (Ankur Sinha Gmail) 0.15.0-2 - Disable mistakenly enabled docs generation * Mon Nov 19 2018 Ankur Sinha (Ankur Sinha Gmail) 0.15.0-1 - Initial import ## END: Generated by rpmautospec