%global octpkg mmclab
Name: mmc
Version: 1.7.9
Release: 12%{?dist}
License: GPLv3+
URL: http://mcx.space/mmc
Source0: https://github.com/fangq/%{name}/archive/v%{version}/%{name}-%{version}.tar.gz
Summary: A GPU-based mesh-based Monte Carlo (MMC) photon simulator
BuildRequires: make
BuildRequires: octave-devel gcc-c++ vim-common opencl-headers ocl-icd-devel
Requires: octave opencl-filesystem octave-iso2mesh
Requires(post): octave
Requires(postun): octave
Provides: bundled(ssemath) = 0.0
Provides: bundled(cjson) = 0.0
%description
Mesh-based Monte Carlo (MMC) is a 3D Monte Carlo (MC) simulation software
for photon transport in complex turbid media. MMC combines the strengths
of the MC-based technique and the finite-element (FE) method: on the
one hand, it can handle general media, including low-scattering ones,
as in the MC method; on the other hand, it can use an FE-like tetrahedral
mesh to represent curved boundaries and complex structures, making it
even more accurate, flexible, and memory efficient. MMC uses the
state-of-the-art ray-tracing techniques to simulate photon propagation in
a mesh space. It has been extensively optimized for excellent computational
efficiency and portability. MMC currently supports both multi-threaded
parallel computing and GPU to maximize performance on modern processors.
%package -n octave-%{octpkg}
Summary: A GPU mesh-based Monte Carlo photon simulator for MATLAB/Octave
Requires: octave opencl-filesystem octave-iso2mesh
Recommends: %{octpkg}-demos
%description -n octave-%{octpkg}
MMCLAB is the native MEX version of MMC - Mesh-based Monte Carlo - for
MATLAB and GNU Octave. By converting the input and output files into
convenient in-memory variables, MMCLAB is very intuitive to use and
straightforward to be integrated with mesh generation and post-simulation
analyses. Because MMCLAB contains the same computational codes for
OpenCL-based photon simulation as in a MMC binary, running MMCLAB
inside MATLAB is expected to give similar speed as running a standalone
MMC binary using either a CPU or a GPU.
%package -n %{octpkg}-demos
Summary: Example datasets and scripts for MMCLAB toolbox
BuildArch: noarch
Requires: octave octave-%{octpkg} octave-iso2mesh
%description -n %{octpkg}-demos
This package contains the demo script and sample datasets for octave-%{octpkg}.
%package demos
Summary: Example datasets and scripts for Mesh-based Monte Carlo - MMC
BuildArch: noarch
Requires: octave octave-iso2mesh
%description demos
This package contains the demo script and sample datasets for MMC.
%prep
%autosetup -n %{name}-%{version}
rm -rf .git_filters .gitattributes deploy webmmc
cp matlab/*.m mmclab
cp LICENSE.txt COPYING
cat > DESCRIPTION << EOF
Name: %{octpkg}
Version: %{version}
Date: %(date +"%Y-%d-%m")
Title: %{summary}
Author: Qianqian Fang <fangqq@gmail.com>
Maintainer: Qianqian Fang <fangqq@gmail.com>
Description: Mesh-based Monte Carlo (MMC) is a 3D Monte Carlo (MC) simulation software
for photon transport in complex turbid media. MMC combines the strengths
of the MC-based technique and the finite-element (FE) method: on the
one hand, it can handle general media, including low-scattering ones,
as in the MC method; on the other hand, it can use an FE-like tetrahedral
mesh to represent curved boundaries and complex structures, making it
even more accurate, flexible, and memory efficient. MMC uses the
state-of-the-art ray-tracing techniques to simulate photon propagation in
a mesh space. It has been extensively optimized for excellent computational
efficiency and portability. MMC currently supports both multi-threaded
parallel computing and GPU to maximize performance on a multi-core processor.
URL: %{url}
Depends: iso2mesh
EOF
cat > INDEX << EOF
mmclab >> MMCLAB
MMCLAB
generate_g1
genT5mesh
genT6mesh
loadmch
load_mc_prop
mmc2json
mmcadddet
mmcaddsrc
mmcdettime
mmcdettpsf
mmcdetweight
mmcjacobian
mmcjmua
mmcjmus
mmclab
mmcmeanpath
mmcmeanscat
mmcraytrace
mmcsrcdomain
readmmcelem
readmmcface
readmmcmesh
readmmcnode
savemmcmesh
SphDiffusion Toolbox
besselhprime
besseljprime
besselyprime
cart2sphorigin
spbesselh
spbesselhprime
spbesselj
spbesseljprime
spbessely
spbesselyprime
spharmonic
sphdiffAcoeff
sphdiffBcoeff
sphdiffCcoeff
sphdiffexterior
sphdiffincident
sphdiffinterior
sphdiffscatter
sphdiffusioninfinite
sphdiffusion
sphdiffusionscatteronly
sphdiffusionsemi
sphdiffusionslab
EOF
%build
%set_build_flags
rm -rf src/SFMT
# Build octave bits
%ifarch %ix86 x86_64
%make_build -C src oct LFLAGS="-L`octave-config -p OCTLIBDIR` -lOpenCL" USERCCFLAGS="%{optflags} -DUSE_OS_TIMER -DUSE_OPENCL"
%else
%make_build -C src octomp LFLAGS="-L`octave-config -p OCTLIBDIR` -lOpenCL" USERCCFLAGS="%{optflags} -DUSE_OS_TIMER -DUSE_OPENCL"
%endif
rm %{octpkg}/*.txt
mv %{octpkg}/example .
mv %{octpkg} inst
mv src/Makefile .
%octave_pkg_build
# Build non octave bits
mv Makefile src
pushd src
%make_build clean
%ifarch %ix86 x86_64
%make_build USERCCFLAGS="%{optflags} -DUSE_OS_TIMER -DUSE_OPENCL"
%else
%make_build omp USERCCFLAGS="%{optflags} -DUSE_OS_TIMER -DUSE_OPENCL"
%endif
mkdir -p ../bin
cp bin/%{name} ../bin/%{name}
popd
%if 0%{?fedora} <=30
%global octave_tar_suffix any-none
%endif
%install
%octave_pkg_install
install -m 0755 -pd %{buildroot}%{_bindir}
install -m 0755 -pt %{buildroot}%{_bindir} bin/%{name}
# Move mex to arch specific directory
mkdir -p -m 0755 %{buildroot}/%{octpkglibdir}/%{octave_host}-%{octave_api}
mv %{buildroot}/%{octpkgdir}/*.mex %{buildroot}/%{octpkglibdir}/%{octave_host}-%{octave_api} -v
%post -n octave-%{octpkg}
%octave_cmd pkg rebuild
%preun -n octave-%{octpkg}
%octave_pkg_preun
%postun -n octave-%{octpkg}
%octave_cmd pkg rebuild
%files
%license LICENSE.txt
%doc README.txt AUTHORS.txt
%{_bindir}/%{name}
%files demos
%license LICENSE.txt
%doc README.txt AUTHORS.txt
%doc examples
%files -n octave-%{octpkg}
%license LICENSE.txt
%doc README.txt AUTHORS.txt
%doc %{octpkgdir}/doc-cache
%{octpkglibdir}
%{octpkgdir}
%{octpkgdir}/packinfo
%files -n %{octpkg}-demos
%license LICENSE.txt
%doc README.txt AUTHORS.txt
%doc example
%changelog
* Thu Jul 18 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-12
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
* Thu Jan 25 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-11
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Sun Jan 21 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-10
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-3
- Second attempt - Rebuilt for
https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.7.9-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Fri Oct 04 2019 Qianqian Fang <fangqq@gmail.com> - 1.7.9-1
- Initial package