Name: bout++ Version: 4.3.2 Release: 4%{?dist} Summary: Library for the BOUndary Turbulence simulation framework # BOUT++ itself is LGPL, but we are linking with GPLed code, so the distributed library is GPL License: GPLv3+ URL: https://boutproject.github.io/ Source0: https://github.com/boutproject/BOUT-dev/releases/download/v%{version}/BOUT++-v%{version}.tar.gz %if 0%{?fedora} >= 33 %bcond_without flexiblas %else %bcond_with flexiblas %endif # Disable tests and manual on epel < 8 %if 0%{?rhel} && 0%{?rhel} < 8 %bcond_with manual %bcond_with test %bcond_with sundials %bcond_with petsc %else %bcond_without manual %bcond_without test %bcond_without sundials %bcond_without petsc %endif # Enable both mpi every where %bcond_without mpich %bcond_without openmpi # Enable weak dependencies %if 0%{?fedora} || ( 0%{?rhel} && 0%{?rhel} > 7 ) %bcond_without recommend %else %bcond_with recommend %endif %if 0%{?fedora} || ( 0%{?rhel} && 0%{?rhel} > 7 ) # Use system mpark %bcond_without system_mpark %else %bcond_with system_mpark %endif # # DEPENDENCIES # BuildRequires: m4 BuildRequires: zlib-devel BuildRequires: autoconf BuildRequires: autoconf-archive BuildRequires: gettext-devel BuildRequires: automake BuildRequires: environment-modules BuildRequires: netcdf-devel BuildRequires: netcdf-cxx%{?fedora:4}-devel BuildRequires: hdf5-devel BuildRequires: fftw-devel BuildRequires: make BuildRequires: python%{python3_pkgversion} BuildRequires: python%{python3_pkgversion}-numpy BuildRequires: python%{python3_pkgversion}-Cython BuildRequires: python%{python3_pkgversion}-netcdf4 BuildRequires: python%{python3_pkgversion}-scipy %if %{with flexiblas} BuildRequires: flexiblas-devel %else BuildRequires: blas-devel BuildRequires: lapack-devel %endif BuildRequires: gcc-c++ %if %{with system_mpark} BuildRequires: mpark-variant-devel %endif # cxx generation BuildRequires: python%{python3_pkgversion}-jinja2 # Documentation %if %{with manual} BuildRequires: doxygen BuildRequires: python3-sphinx %endif %if %{with petsc} && %{with mpich} BuildRequires: petsc-mpich-devel BuildRequires: hdf5-mpich-devel %endif %if %{with petsc} && %{with openmpi} BuildRequires: petsc-openmpi-devel BuildRequires: hdf5-openmpi-devel %endif %if %{with sundials} && %{with mpich} BuildRequires: sundials-mpich-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 BuildRequires: sundials-devel %endif %if %{with sundials} && %{with openmpi} BuildRequires: sundials-openmpi-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 BuildRequires: sundials-devel %endif # # DESCRIPTIONS # %if %{with mpich} BuildRequires: mpich-devel %global mpi_list mpich %endif %if %{with openmpi} BuildRequires: openmpi-devel %global mpi_list %{?mpi_list} openmpi %endif %description BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. %if %{with mpich} %package mpich Summary: BOUT++ mpich libraries Requires: %{name}-common = %{version}-%{release} # Use bundled version, to reproduce upstream results Provides: bundled(libpvode) %if %{with recommend} Recommends: environment-modules %endif %package mpich-devel Summary: BOUT++ mpich libraries Requires: %{name}-mpich = %{version}-%{release} Recommends: gcc-c++ Recommends: make Recommends: mpich-devel Recommends: zlib-devel Recommends: gettext-devel Recommends: netcdf-devel Recommends: netcdf-cxx%{?fedora:4}-devel Recommends: hdf5-devel Recommends: fftw-devel %if %{with flexiblas} Recommends: flexiblas-devel %else Recommends: blas-devel Recommends: lapack-devel %endif %if %{with system_mpark} Recommends: mpark-variant-devel %endif %if %{with petsc} Recommends: petsc-mpich-devel Recommends: hdf5-mpich-devel %endif %if %{with sundials} Recommends: sundials-mpich-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 Recommends: sundials-devel %endif %description mpich-devel BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for mpich. %description mpich BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for mpich. %package -n python%{python3_pkgversion}-%{name}-mpich Summary: BOUT++ mpich library for python%{python3_pkgversion} Requires: %{name}-mpich Requires: python%{python3_pkgversion}-%{name} BuildRequires: python%{python3_pkgversion}-devel Requires: mpich Requires: python%{python3_pkgversion}-mpich Requires: python%{python3_pkgversion}-numpy %{?python_provide:%python_provide python%{python3_pkgversion}-%{name}-mpich} %description -n python%{python3_pkgversion}-%{name}-mpich This is the BOUT++ library python%{python3_pkgversion} with mpich. %endif %if %{with openmpi} %package openmpi Summary: BOUT++ openmpi libraries # Use bundled version, to reproduce upstream results Provides: bundled(libpvode) Requires: %{name}-common = %{version}-%{release} %if %{with recommend} Recommends: environment-modules %endif %package openmpi-devel Summary: BOUT++ openmpi libraries Requires: %{name}-openmpi = %{version}-%{release} Recommends: gcc-c++ Recommends: make Recommends: openmpi-devel Recommends: zlib-devel Recommends: gettext-devel Recommends: netcdf-devel Recommends: netcdf-cxx%{?fedora:4}-devel Recommends: hdf5-devel Recommends: fftw-devel %if %{with flexiblas} Recommends: flexiblas-devel %else Recommends: blas-devel Recommends: lapack-devel %endif %if %{with system_mpark} Recommends: mpark-variant-devel %endif %if %{with petsc} Recommends: petsc-openmpi-devel Recommends: hdf5-openmpi-devel %endif %if %{with sundials} Recommends: sundials-openmpi-devel # https://bugzilla.redhat.com/show_bug.cgi?id=1839131 Recommends: sundials-devel %endif %description openmpi-devel BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for openmpi and provides the required header files. %description openmpi BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This BOUT++ library is build for openmpi. %package -n python%{python3_pkgversion}-%{name}-openmpi Summary: BOUT++ openmpi library for python%{python3_pkgversion} Requires: %{name}-openmpi Requires: python%{python3_pkgversion}-%{name} BuildRequires: python%{python3_pkgversion}-devel Requires: openmpi Requires: python%{python3_pkgversion}-openmpi Requires: python%{python3_pkgversion}-numpy %{?python_provide:%python_provide python%{python3_pkgversion}-%{name}-openmpi} %description -n python%{python3_pkgversion}-%{name}-openmpi This is the BOUT++ library python%{python3_pkgversion} with openmpi. %endif %package common Summary: Common files for BOUT++ %description common MPI-independent files for BOUT++, namely localisation files. %package -n python%{python3_pkgversion}-%{name} Summary: BOUT++ python library Requires: netcdf4-python%{python3_pkgversion} Requires: python%{python3_pkgversion}-numpy %if %{with recommend} Recommends: python%{python3_pkgversion}-scipy Recommends: python%{python3_pkgversion}-matplotlib %endif BuildArch: noarch %{?python_provide:%python_provide python%{python3_pkgversion}-%{name}} Provides: python%{python3_pkgversion}-boututils Provides: python%{python3_pkgversion}-boutdata Provides: python%{python3_pkgversion}-bout_runners Provides: python%{python3_pkgversion}-zoidberg %{?python_provide:%python_provide python%{python3_pkgversion}-bout_runners} %{?python_provide:%python_provide python%{python3_pkgversion}-boututils} %{?python_provide:%python_provide python%{python3_pkgversion}-boutdata} %{?python_provide:%python_provide python%{python3_pkgversion}-zoidberg} %description -n python%{python3_pkgversion}-%{name} Python%{python3_pkgversion} library for pre and post processing of BOUT++ data %if %{with manual} %package -n %{name}-doc Summary: BOUT++ Documentation BuildArch: noarch %description -n %{name}-doc BOUT++ is a framework for writing fluid and plasma simulations in curvilinear geometry. It is intended to be quite modular, with a variety of numerical methods and time-integration solvers available. BOUT++ is primarily designed and tested with reduced plasma fluid models in mind, but it can evolve any number of equations, with equations appearing in a readable form. This package contains the documentation. %endif # # PREP # %prep %setup -q -n BOUT++-v%{version} %if %{with system_mpark} # use mpark provided by fedora rm -rf externalpackages/mpark.variant/ mkdir -p externalpackages/mpark.variant/include/ %endif # Remove shebang for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) do sed -i '/^#!\//d' $f done autoreconf # # BUILD # %build # MPI builds export CC=mpicc export CXX=mpicxx for mpi in %{mpi_list} do mkdir build_$mpi cp -al [^b]* build-aux bin build_$mpi done for mpi in %{mpi_list} do pushd build_$mpi if [ $mpi = mpich ] ; then %_mpich_load elif [ $mpi = openmpi ] ; then %_openmpi_load else echo "unknown mpi" &> /dev/stderr exit 1 fi %configure \ --with-netcdf \ --with-hdf5 \ --enable-shared \ --with-system-mpark \ --libdir=%{_libdir}/$mpi/lib \ --bindir=%{_libdir}/$mpi/bin \ --sbindir=%{_libdir}/$mpi/sbin \ --includedir=%{_includedir}/$mpi-%{_arch} \ --datarootdir=%{_datadir} \ %if %{with petsc} --with-petsc \ %endif %if %{with sundials} --with-sundials \ %endif sed -e "s| -L%{_libdir} | |g" \ -e "s| -Wl,--as-needed | |g" \ -i make.config # Debug linking issues: # -e 's|@$(LD)|$(LD)|' \ %if %{with flexiblas} sed -e 's|-lblas|-lflexiblas|g' \ -e 's|-llapack|-lflexiblas|g' \ -i make.config %endif cat make.config make %{?_smp_mflags} shared python export LD_LIBRARY_PATH=$(pwd)/lib %if %{with manual} make %{?_smp_mflags} -C manual html %endif if [ $mpi = mpich ] ; then %_mpich_unload elif [ $mpi = openmpi ] ; then %_openmpi_unload fi popd done # # INSTALL # %install for mpi in %{mpi_list} do pushd build_$mpi if [ $mpi = mpich ] ; then %_mpich_load else %_openmpi_load fi make install DESTDIR=${RPM_BUILD_ROOT} # mark this as a released version, to disable compiling the library sed -i '27 i RELEASED = %{version}-%{release}' ${RPM_BUILD_ROOT}/%{_includedir}/${mpi}-%{_arch}/bout++/make.config rm -rf ${RPM_BUILD_ROOT}/usr/share/bout++ rm -f ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/*.a install lib/*.so.* ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/ pushd ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/ for f in *.so.* do ln -s $f ${f%%.so*}.so done popd popd mkdir -p ${RPM_BUILD_ROOT}/usr/share/modulefiles/bout++ cat > ${RPM_BUILD_ROOT}/usr/share/modulefiles/bout++/$MPI_COMPILER < 4.3.2-4 - Increase timeout for tests RHBZ#1914777 * Wed Jan 06 2021 Orion Poplawski - 4.3.2-3 - Rebuild for sundials 5.6.1 * Sun Nov 22 2020 David Schwörer 4.3.2-2 - Rebuild for sundials 5.5.0 and petsc 3.14.1 * Wed Oct 21 2020 David Schwörer 4.3.2-1 - Update to 4.3.2 - add python provides - add recomands for devel packages - add module files * Wed Oct 7 2020 Orion Poplawski - 4.3.1-8 - Rebuild for sundials 5.4.0 * Thu Aug 20 2020 Iñaki Úcar - 4.3.1-7 - https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager * Sat Aug 15 2020 David Schwörer 4.3.1-6 - Enable sundials and petsc - Rebuild with flexiblas * Sat Aug 08 2020 David Schwörer - 4.3.1-5 - Disable lto for s390x * Sat Aug 01 2020 Fedora Release Engineering - 4.3.1-4 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 4.3.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro Hrončok - 4.3.1-2 - Rebuilt for Python 3.9 * Fri Mar 27 2020 David Schwörer - 4.3.1-1 - Update to 4.3.1 * Tue Jan 28 2020 Fedora Release Engineering - 4.3.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Wed Dec 11 2019 David Schwörer - 4.3.0-2 - update make.config during install * Thu Dec 05 2019 David Schwörer - 4.3.0-1 - update to 4.3.0 - add common subpackage for lang files * Fri Aug 23 2019 David Schwörer - 4.2.2-1 - Remove ldconfig scriptlets - Use mpi scriplets - Ensure sitelib packages do not match arched mpi packages - Move commons package to the base packages - Specify so version - Drop man page for library * Fri Mar 01 2019 David Schwörer - 4.2.2-0 - Update to version 4.2.2 * Thu Feb 07 2019 David Schwörer - 4.2.1-0 - Fix license - Bump to 4.2.1 - Use new release - Release contains gtest, so we can run make check * Tue Dec 04 2018 David Schwörer - 4.2.0-3 - Fix recommend * Thu Oct 18 2018 David Schwörer - 4.2.0-2 - Update to 4.2.0 - Remove python2 support - Add boutcore support - Fix mangling of shebangs * Tue Dec 12 2017 David Schwörer - 4.1.2-2 - Add missing python_provide macro * Fri Dec 01 2017 David Schwörer - 4.1.2-1 - Update to new release, remove patch * Tue May 02 2017 David Schwörer - 4.1.1-1 - Initial RPM release.