Warning: Permanently added '100.24.115.29' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 1885770 --chroot fedora-rawhide-x86_64 --detached Version: 0.44 Task: {'bootstrap': 'off', 'build_id': 1885770, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'git_hash': 'bbf5d41bedd7f7e619c2fa278b3e2b98e58d06e2', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dormouse/Cython-0.29_py38/bout++.git', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bout++', 'package_version': '4.3.2-4.fc33', 'project_dirname': 'Cython-0.29_py38', 'project_name': 'Cython-0.29_py38', 'project_owner': 'dormouse', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dormouse/Cython-0.29_py38/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'dormouse/Cython-0.29_py38--https://src.fedoraproject.org/user/davidsch', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/davidsch', 'task_id': '1885770-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dormouse/Cython-0.29_py38/bout++.git /tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++ --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dormouse/Cython-0.29_py38/bout++.git', '/tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++'... Running: git checkout bbf5d41bedd7f7e619c2fa278b3e2b98e58d06e2 cmd: ['git', 'checkout', 'bbf5d41bedd7f7e619c2fa278b3e2b98e58d06e2'] cwd: /tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++ rc: 0 stdout: stderr: Note: switching to 'bbf5d41bedd7f7e619c2fa278b3e2b98e58d06e2'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at bbf5d41 automatic import of bout++ Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++ rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading BOUT++-v4.3.2.tar.gz INFO: Calling: curl -H Pragma: -o BOUT++-v4.3.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dormouse/Cython-0.29_py38/bout++/BOUT++-v4.3.2.tar.gz/md5/0e68f99862bf9e26db4adb5040d68745/BOUT++-v4.3.2.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 18.3M 100 18.3M 0 0 40.7M 0 --:--:-- --:--:-- --:--:-- 40.6M INFO: Reading stdout from command: md5sum BOUT++-v4.3.2.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++/bout++.spec --sources /tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++ --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1610893659.312021 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.8 starting (python version = 3.9.0, NVR = mock-2.8-1.fc33)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++/bout++.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1610893659.312021/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.8 INFO: Mock Version: 2.8 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Copr repository 4.3 MB/s | 1.5 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 50 MB/s | 56 MB 00:01 fedora 27 MB/s | 73 MB 00:02 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash  x86_64 5.1.0-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 M bzip2  x86_64 1.0.8-4.fc33 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142 k sqlite-libs  x86_64 3.34.0-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 626 k systemd-libs  x86_64 247.2-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k tzdata  noarch 2020f-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 432 k xxhash-libs  x86_64 0.8.0-1.fc33 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k xz-libs  x86_64 5.2.5-4.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91 k zip  x86_64 3.0-27.fc33 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 258 k zlib  x86_64 1.2.11-23.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92 k zstd  x86_64 1.4.7-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 568 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 148 Packages Total download size: 58 M Installed size: 225 M Downloading Packages: (1/148): basesystem-11-10.fc33.noarch.rpm 190 kB/s | 6.8 kB 00:00 (2/148): audit-libs-3.0-1.fc34.x86_64.rpm 2.8 MB/s | 113 kB 00:00 (3/148): alternatives-1.14-3.fc33.x86_64.rpm 775 kB/s | 36 kB 00:00 (4/148): binutils-gold-2.35.1-21.fc34.x86_64.rp 12 MB/s | 747 kB 00:00 (5/148): bash-5.1.0-1.fc34.x86_64.rpm 20 MB/s | 1.7 MB 00:00 (6/148): bzip2-1.0.8-4.fc33.x86_64.rpm 3.6 MB/s | 52 kB 00:00 (7/148): bzip2-libs-1.0.8-4.fc33.x86_64.rpm 5.5 MB/s | 40 kB 00:00 (8/148): ca-certificates-2020.2.41-6.fc34.noarc 17 MB/s | 353 kB 00:00 (9/148): coreutils-8.32-15.fc34.x86_64.rpm 20 MB/s | 1.1 MB 00:00 (10/148): cpio-2.13-8.fc33.x86_64.rpm 15 MB/s | 273 kB 00:00 (11/148): cracklib-2.9.6-24.fc33.x86_64.rpm 8.9 MB/s | 83 kB 00:00 (12/148): crypto-policies-20200918-1.git85dccc5 7.6 MB/s | 57 kB 00:00 (13/148): coreutils-common-8.32-15.fc34.x86_64. 20 MB/s | 2.0 MB 00:00 (14/148): curl-7.74.0-2.fc34.x86_64.rpm 12 MB/s | 300 kB 00:00 (15/148): cyrus-sasl-lib-2.1.27-6.fc33.x86_64.r 9.4 MB/s | 101 kB 00:00 (16/148): dwz-0.13-4.fc33.x86_64.rpm 12 MB/s | 106 kB 00:00 (17/148): diffutils-3.7-7.fc34.x86_64.rpm 18 MB/s | 390 kB 00:00 (18/148): ed-1.14.2-9.fc33.x86_64.rpm 12 MB/s | 75 kB 00:00 (19/148): efi-srpm-macros-4-5.fc33.noarch.rpm 4.7 MB/s | 21 kB 00:00 (20/148): elfutils-debuginfod-client-0.182-2.fc 5.9 MB/s | 32 kB 00:00 (21/148): binutils-2.35.1-21.fc34.x86_64.rpm 20 MB/s | 5.3 MB 00:00 (22/148): elfutils-default-yama-scope-0.182-2.f 703 kB/s | 16 kB 00:00 (23/148): elfutils-libelf-0.182-2.fc34.x86_64.r 16 MB/s | 193 kB 00:00 (24/148): elfutils-0.182-2.fc34.x86_64.rpm 11 MB/s | 525 kB 00:00 (25/148): elfutils-libs-0.182-2.fc34.x86_64.rpm 16 MB/s | 265 kB 00:00 (26/148): expat-2.2.10-1.fc34.x86_64.rpm 12 MB/s | 104 kB 00:00 (27/148): fedora-release-34-0.10.noarch.rpm 2.3 MB/s | 11 kB 00:00 (28/148): fedora-release-common-34-0.10.noarch. 4.2 MB/s | 20 kB 00:00 (29/148): fedora-gpg-keys-34-0.8.noarch.rpm 11 MB/s | 107 kB 00:00 (30/148): fedora-release-identity-basic-34-0.10 2.4 MB/s | 12 kB 00:00 (31/148): fedora-repos-34-0.8.noarch.rpm 2.5 MB/s | 11 kB 00:00 (32/148): fedora-repos-rawhide-34-0.8.noarch.rp 2.1 MB/s | 10 kB 00:00 (33/148): file-5.39-4.fc34.x86_64.rpm 7.9 MB/s | 51 kB 00:00 (34/148): file-libs-5.39-4.fc34.x86_64.rpm 20 MB/s | 591 kB 00:00 (35/148): findutils-4.8.0-1.fc34.x86_64.rpm 18 MB/s | 545 kB 00:00 (36/148): fonts-srpm-macros-2.0.5-4.fc33.noarch 4.7 MB/s | 27 kB 00:00 (37/148): fpc-srpm-macros-1.3-2.fc33.noarch.rpm 1.6 MB/s | 7.6 kB 00:00 (38/148): gc-8.0.4-4.fc33.x86_64.rpm 12 MB/s | 104 kB 00:00 (39/148): filesystem-3.14-4.fc34.x86_64.rpm 19 MB/s | 1.1 MB 00:00 (40/148): ghc-srpm-macros-1.5.0-3.fc33.noarch.r 1.7 MB/s | 7.7 kB 00:00 (41/148): gawk-5.1.0-2.fc33.x86_64.rpm 18 MB/s | 1.0 MB 00:00 (42/148): glibc-common-2.32.9000-26.fc34.x86_64 21 MB/s | 2.1 MB 00:00 (43/148): glibc-minimal-langpack-2.32.9000-26.f 13 MB/s | 110 kB 00:00 (44/148): gdb-minimal-10.1-2.fc34.x86_64.rpm 20 MB/s | 3.6 MB 00:00 (45/148): gmp-6.2.0-5.fc34.x86_64.rpm 11 MB/s | 320 kB 00:00 (46/148): glibc-2.32.9000-26.fc34.x86_64.rpm 20 MB/s | 3.5 MB 00:00 (47/148): gnat-srpm-macros-4-12.fc33.noarch.rpm 458 kB/s | 8.2 kB 00:00 (48/148): go-srpm-macros-3.0.9-1.fc34.noarch.rp 1.3 MB/s | 25 kB 00:00 (49/148): gzip-1.10-3.fc33.x86_64.rpm 13 MB/s | 152 kB 00:00 (50/148): grep-3.6-1.fc34.x86_64.rpm 14 MB/s | 260 kB 00:00 (51/148): kernel-srpm-macros-1.0-3.fc33.noarch. 1.8 MB/s | 7.2 kB 00:00 (52/148): info-6.7-8.fc33.x86_64.rpm 16 MB/s | 228 kB 00:00 (53/148): keyutils-libs-1.6.1-1.fc34.x86_64.rpm 4.8 MB/s | 31 kB 00:00 (54/148): libacl-2.2.53-9.fc34.x86_64.rpm 4.9 MB/s | 23 kB 00:00 (55/148): libarchive-3.5.1-1.fc34.x86_64.rpm 18 MB/s | 391 kB 00:00 (56/148): libattr-2.4.48-10.fc33.x86_64.rpm 4.0 MB/s | 18 kB 00:00 (57/148): krb5-libs-1.19-0.beta2.1.fc34.x86_64. 19 MB/s | 734 kB 00:00 (58/148): libblkid-2.36.1-3.fc34.x86_64.rpm 8.4 MB/s | 100 kB 00:00 (59/148): libcap-2.44-1.fc34.x86_64.rpm 9.5 MB/s | 60 kB 00:00 (60/148): libbrotli-1.0.9-3.fc34.x86_64.rpm 17 MB/s | 322 kB 00:00 (61/148): libcap-ng-0.8.2-1.fc34.x86_64.rpm 6.6 MB/s | 32 kB 00:00 (62/148): libcom_err-1.45.6-4.fc33.x86_64.rpm 4.8 MB/s | 27 kB 00:00 (63/148): libcurl-7.74.0-2.fc34.x86_64.rpm 14 MB/s | 285 kB 00:00 (64/148): libeconf-0.3.8-4.fc33.x86_64.rpm 4.8 MB/s | 24 kB 00:00 (65/148): libfdisk-2.36.1-3.fc34.x86_64.rpm 15 MB/s | 151 kB 00:00 (66/148): libdb-5.3.28-45.fc34.x86_64.rpm 19 MB/s | 760 kB 00:00 (67/148): libffi-3.1-27.fc34.x86_64.rpm 3.6 MB/s | 33 kB 00:00 (68/148): libgcc-11.0.0-0.13.fc34.x86_64.rpm 11 MB/s | 88 kB 00:00 (69/148): libgomp-11.0.0-0.13.fc34.x86_64.rpm 17 MB/s | 257 kB 00:00 (70/148): libgcrypt-1.8.7-1.fc34.x86_64.rpm 17 MB/s | 476 kB 00:00 (71/148): libgpg-error-1.41-1.fc34.x86_64.rpm 15 MB/s | 212 kB 00:00 (72/148): libidn2-2.3.0-4.fc34.x86_64.rpm 11 MB/s | 104 kB 00:00 (73/148): libmetalink-0.1.3-13.fc33.x86_64.rpm 5.3 MB/s | 31 kB 00:00 (74/148): libmount-2.36.1-3.fc34.x86_64.rpm 13 MB/s | 131 kB 00:00 (75/148): libnghttp2-1.42.0-1.fc34.x86_64.rpm 9.6 MB/s | 76 kB 00:00 (76/148): libnsl2-1.3.0-1.fc34.x86_64.rpm 10 MB/s | 58 kB 00:00 (77/148): libpkgconf-1.7.3-5.fc34.x86_64.rpm 6.7 MB/s | 36 kB 00:00 (78/148): libpsl-0.21.1-2.fc33.x86_64.rpm 8.5 MB/s | 61 kB 00:00 (79/148): libpwquality-1.4.4-1.fc34.x86_64.rpm 12 MB/s | 104 kB 00:00 (80/148): libselinux-3.1-6.fc34.x86_64.rpm 12 MB/s | 84 kB 00:00 (81/148): libsemanage-3.1-6.fc34.x86_64.rpm 13 MB/s | 116 kB 00:00 (82/148): libsigsegv-2.11-11.fc33.x86_64.rpm 5.0 MB/s | 26 kB 00:00 (83/148): libsepol-3.1-5.fc34.x86_64.rpm 16 MB/s | 283 kB 00:00 (84/148): libsmartcols-2.36.1-3.fc34.x86_64.rpm 8.0 MB/s | 59 kB 00:00 (85/148): libssh-config-0.9.5-1.fc34.noarch.rpm 2.2 MB/s | 11 kB 00:00 (86/148): libssh-0.9.5-1.fc34.x86_64.rpm 16 MB/s | 209 kB 00:00 (87/148): libtasn1-4.16.0-3.fc33.x86_64.rpm 9.1 MB/s | 75 kB 00:00 (88/148): libtirpc-1.3.1-0.fc34.x86_64.rpm 14 MB/s | 95 kB 00:00 (89/148): libtool-ltdl-2.4.6-38.fc34.x86_64.rpm 7.6 MB/s | 36 kB 00:00 (90/148): libstdc++-11.0.0-0.13.fc34.x86_64.rpm 22 MB/s | 693 kB 00:00 (91/148): libutempter-1.2.1-3.fc34.x86_64.rpm 4.8 MB/s | 26 kB 00:00 (92/148): libuuid-2.36.1-3.fc34.x86_64.rpm 3.9 MB/s | 24 kB 00:00 (93/148): guile22-2.2.7-1.fc34.x86_64.rpm 22 MB/s | 6.5 MB 00:00 (94/148): libverto-0.3.0-11.fc34.x86_64.rpm 783 kB/s | 21 kB 00:00 (95/148): libunistring-0.9.10-9.fc33.x86_64.rpm 10 MB/s | 516 kB 00:00 (96/148): libxcrypt-4.4.17-1.fc34.x86_64.rpm 8.7 MB/s | 121 kB 00:00 (97/148): libzstd-1.4.7-1.fc34.x86_64.rpm 14 MB/s | 340 kB 00:00 (98/148): lua-srpm-macros-1-2.fc34.noarch.rpm 2.2 MB/s | 7.9 kB 00:00 (99/148): libxml2-2.9.10-9.fc34.x86_64.rpm 17 MB/s | 744 kB 00:00 (100/148): lz4-libs-1.9.3-1.fc34.x86_64.rpm 7.4 MB/s | 67 kB 00:00 (101/148): lua-libs-5.4.2-1.fc34.x86_64.rpm 6.3 MB/s | 216 kB 00:00 (102/148): ncurses-base-6.2-3.20200222.fc33.noa 7.0 MB/s | 60 kB 00:00 (103/148): make-4.3-2.fc33.x86_64.rpm 17 MB/s | 539 kB 00:00 (104/148): ncurses-libs-6.2-3.20200222.fc33.x86 15 MB/s | 329 kB 00:00 (105/148): nim-srpm-macros-3-3.fc33.noarch.rpm 1.3 MB/s | 8.3 kB 00:00 (106/148): ocaml-srpm-macros-6-3.fc33.noarch.rp 1.9 MB/s | 7.7 kB 00:00 (107/148): openblas-srpm-macros-2-8.fc33.noarch 1.8 MB/s | 7.2 kB 00:00 (108/148): openldap-2.4.56-4.fc34.x86_64.rpm 15 MB/s | 260 kB 00:00 (109/148): mpfr-4.1.0-2.fc33.x86_64.rpm 19 MB/s | 1.4 MB 00:00 (110/148): p11-kit-0.23.22-1.fc34.x86_64.rpm 12 MB/s | 369 kB 00:00 (111/148): p11-kit-trust-0.23.22-1.fc34.x86_64. 5.1 MB/s | 141 kB 00:00 (112/148): patch-2.7.6-13.fc33.x86_64.rpm 14 MB/s | 129 kB 00:00 (113/148): pam-1.5.1-2.fc34.x86_64.rpm 19 MB/s | 545 kB 00:00 (114/148): pcre-8.44-3.fc34.x86_64.rpm 13 MB/s | 200 kB 00:00 (115/148): pcre2-10.36-2.fc34.x86_64.rpm 18 MB/s | 234 kB 00:00 (116/148): openssl-libs-1.1.1i-1.fc34.x86_64.rp 15 MB/s | 1.4 MB 00:00 (117/148): pcre2-syntax-10.36-2.fc34.noarch.rpm 9.6 MB/s | 143 kB 00:00 (118/148): perl-srpm-macros-1-38.fc33.noarch.rp 778 kB/s | 8.3 kB 00:00 (119/148): pkgconf-1.7.3-5.fc34.x86_64.rpm 6.8 MB/s | 41 kB 00:00 (120/148): pkgconf-m4-1.7.3-5.fc34.noarch.rpm 3.4 MB/s | 14 kB 00:00 (121/148): pkgconf-pkg-config-1.7.3-5.fc34.x86_ 2.2 MB/s | 10 kB 00:00 (122/148): popt-1.18-2.fc34.x86_64.rpm 11 MB/s | 59 kB 00:00 (123/148): publicsuffix-list-dafsa-20190417-4.f 9.1 MB/s | 55 kB 00:00 (124/148): python-srpm-macros-3.9-11.fc34.noarc 4.0 MB/s | 20 kB 00:00 (125/148): qt5-srpm-macros-5.15.2-1.fc34.noarch 2.1 MB/s | 8.4 kB 00:00 (126/148): redhat-rpm-config-178-1.fc34.noarch. 8.1 MB/s | 65 kB 00:00 (127/148): readline-8.1-1.fc34.x86_64.rpm 15 MB/s | 216 kB 00:00 (128/148): rpm-build-4.16.1.2-1.fc34.x86_64.rpm 11 MB/s | 96 kB 00:00 (129/148): rpm-build-libs-4.16.1.2-1.fc34.x86_6 13 MB/s | 97 kB 00:00 (130/148): rpm-4.16.1.2-1.fc34.x86_64.rpm 19 MB/s | 501 kB 00:00 (131/148): rust-srpm-macros-17-1.fc34.noarch.rp 1.6 MB/s | 9.8 kB 00:00 (132/148): rpm-libs-4.16.1.2-1.fc34.x86_64.rpm 18 MB/s | 327 kB 00:00 (133/148): sed-4.8-6.fc34.x86_64.rpm 18 MB/s | 298 kB 00:00 (134/148): setup-2.13.7-2.fc33.noarch.rpm 8.0 MB/s | 142 kB 00:00 (135/148): sqlite-libs-3.34.0-1.fc34.x86_64.rpm 21 MB/s | 626 kB 00:00 (136/148): systemd-libs-247.2-1.fc34.x86_64.rpm 18 MB/s | 546 kB 00:00 (137/148): shadow-utils-4.8.1-6.fc34.x86_64.rpm 20 MB/s | 1.2 MB 00:00 (138/148): tzdata-2020f-1.fc34.noarch.rpm 15 MB/s | 432 kB 00:00 (139/148): unzip-6.0-49.fc33.x86_64.rpm 15 MB/s | 181 kB 00:00 (140/148): tar-1.32-6.fc33.x86_64.rpm 19 MB/s | 880 kB 00:00 (141/148): which-2.21-20.fc33.x86_64.rpm 4.0 MB/s | 41 kB 00:00 (142/148): xxhash-libs-0.8.0-1.fc33.x86_64.rpm 7.1 MB/s | 41 kB 00:00 (143/148): xz-5.2.5-4.fc34.x86_64.rpm 17 MB/s | 215 kB 00:00 (144/148): xz-libs-5.2.5-4.fc34.x86_64.rpm 9.3 MB/s | 91 kB 00:00 (145/148): zlib-1.2.11-23.fc34.x86_64.rpm 10 MB/s | 92 kB 00:00 (146/148): zip-3.0-27.fc33.x86_64.rpm 17 MB/s | 258 kB 00:00 (147/148): zstd-1.4.7-1.fc34.x86_64.rpm 29 MB/s | 568 kB 00:00 (148/148): util-linux-2.36.1-3.fc34.x86_64.rpm 32 MB/s | 2.5 MB 00:00 -------------------------------------------------------------------------------- Total 45 MB/s | 58 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.14-4.fc34.x86_64 1/1 Preparing : 1/1 Installing : libgcc-11.0.0-0.13.fc34.x86_64 1/148 Running scriptlet: libgcc-11.0.0-0.13.fc34.x86_64 1/148 Installing : crypto-policies-20200918-1.git85dccc5.fc34.noarc 2/148 Running scriptlet: crypto-policies-20200918-1.git85dccc5.fc34.noarc 2/148 Installing : fedora-release-identity-basic-34-0.10.noarch 3/148 Installing : tzdata-2020f-1.fc34.noarch 4/148 Installing : rust-srpm-macros-17-1.fc34.noarch 5/148 Installing : qt5-srpm-macros-5.15.2-1.fc34.noarch 6/148 Installing : publicsuffix-list-dafsa-20190417-4.fc33.noarch 7/148 Installing : pkgconf-m4-1.7.3-5.fc34.noarch 8/148 Installing : perl-srpm-macros-1-38.fc33.noarch 9/148 Installing : pcre2-syntax-10.36-2.fc34.noarch 10/148 Installing : openblas-srpm-macros-2-8.fc33.noarch 11/148 Installing : ocaml-srpm-macros-6-3.fc33.noarch 12/148 Installing : nim-srpm-macros-3-3.fc33.noarch 13/148 Installing : ncurses-base-6.2-3.20200222.fc33.noarch 14/148 Installing : libssh-config-0.9.5-1.fc34.noarch 15/148 Installing : kernel-srpm-macros-1.0-3.fc33.noarch 16/148 Installing : gnat-srpm-macros-4-12.fc33.noarch 17/148 Installing : ghc-srpm-macros-1.5.0-3.fc33.noarch 18/148 Installing : fpc-srpm-macros-1.3-2.fc33.noarch 19/148 Installing : fedora-gpg-keys-34-0.8.noarch 20/148 Installing : fedora-release-34-0.10.noarch 21/148 Installing : fedora-release-common-34-0.10.noarch 22/148 Installing : fedora-repos-rawhide-34-0.8.noarch 23/148 Installing : fedora-repos-34-0.8.noarch 24/148 Installing : setup-2.13.7-2.fc33.noarch 25/148 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.13.7-2.fc33.noarch 25/148 Installing : filesystem-3.14-4.fc34.x86_64 26/148 Installing : basesystem-11-10.fc33.noarch 27/148 Installing : glibc-minimal-langpack-2.32.9000-26.fc34.x86_64 28/148 Installing : glibc-common-2.32.9000-26.fc34.x86_64 29/148 Running scriptlet: glibc-2.32.9000-26.fc34.x86_64 30/148 Installing : glibc-2.32.9000-26.fc34.x86_64 30/148 Running scriptlet: glibc-2.32.9000-26.fc34.x86_64 30/148 Installing : ncurses-libs-6.2-3.20200222.fc33.x86_64 31/148 Installing : bash-5.1.0-1.fc34.x86_64 32/148 Running scriptlet: bash-5.1.0-1.fc34.x86_64 32/148 Installing : zlib-1.2.11-23.fc34.x86_64 33/148 Installing : bzip2-libs-1.0.8-4.fc33.x86_64 34/148 Installing : xz-libs-5.2.5-4.fc34.x86_64 35/148 Installing : elfutils-libelf-0.182-2.fc34.x86_64 36/148 Installing : libstdc++-11.0.0-0.13.fc34.x86_64 37/148 Installing : libxcrypt-4.4.17-1.fc34.x86_64 38/148 Installing : libzstd-1.4.7-1.fc34.x86_64 39/148 Installing : readline-8.1-1.fc34.x86_64 40/148 Installing : gmp-1:6.2.0-5.fc34.x86_64 41/148 Installing : libattr-2.4.48-10.fc33.x86_64 42/148 Installing : libacl-2.2.53-9.fc34.x86_64 43/148 Installing : libcap-2.44-1.fc34.x86_64 44/148 Installing : libcom_err-1.45.6-4.fc33.x86_64 45/148 Installing : libdb-5.3.28-45.fc34.x86_64 46/148 Installing : libuuid-2.36.1-3.fc34.x86_64 47/148 Installing : popt-1.18-2.fc34.x86_64 48/148 Installing : libunistring-0.9.10-9.fc33.x86_64 49/148 Installing : libidn2-2.3.0-4.fc34.x86_64 50/148 Installing : mpfr-4.1.0-2.fc33.x86_64 51/148 Installing : unzip-6.0-49.fc33.x86_64 52/148 Installing : file-libs-5.39-4.fc34.x86_64 53/148 Installing : file-5.39-4.fc34.x86_64 54/148 Installing : sqlite-libs-3.34.0-1.fc34.x86_64 55/148 Installing : alternatives-1.14-3.fc33.x86_64 56/148 Installing : libcap-ng-0.8.2-1.fc34.x86_64 57/148 Installing : audit-libs-3.0-1.fc34.x86_64 58/148 Installing : libffi-3.1-27.fc34.x86_64 59/148 Installing : p11-kit-0.23.22-1.fc34.x86_64 60/148 Installing : libsepol-3.1-5.fc34.x86_64 61/148 Installing : lua-libs-5.4.2-1.fc34.x86_64 62/148 Installing : lz4-libs-1.9.3-1.fc34.x86_64 63/148 Installing : pcre2-10.36-2.fc34.x86_64 64/148 Installing : libselinux-3.1-6.fc34.x86_64 65/148 Installing : sed-4.8-6.fc34.x86_64 66/148 Installing : findutils-1:4.8.0-1.fc34.x86_64 67/148 Installing : libsemanage-3.1-6.fc34.x86_64 68/148 Installing : shadow-utils-2:4.8.1-6.fc34.x86_64 69/148 Running scriptlet: libutempter-1.2.1-3.fc34.x86_64 70/148 Installing : libutempter-1.2.1-3.fc34.x86_64 70/148 Installing : tar-2:1.32-6.fc33.x86_64 71/148 Installing : zip-3.0-27.fc33.x86_64 72/148 Installing : libpsl-0.21.1-2.fc33.x86_64 73/148 Installing : gc-8.0.4-4.fc33.x86_64 74/148 Installing : zstd-1.4.7-1.fc34.x86_64 75/148 Installing : dwz-0.13-4.fc33.x86_64 76/148 Installing : libxml2-2.9.10-9.fc34.x86_64 77/148 Installing : bzip2-1.0.8-4.fc33.x86_64 78/148 Installing : info-6.7-8.fc33.x86_64 79/148 Installing : ed-1.14.2-9.fc33.x86_64 80/148 Installing : patch-2.7.6-13.fc33.x86_64 81/148 Installing : elfutils-default-yama-scope-0.182-2.fc34.noarch 82/148 Running scriptlet: elfutils-default-yama-scope-0.182-2.fc34.noarch 82/148 Installing : cpio-2.13-8.fc33.x86_64 83/148 Installing : diffutils-3.7-7.fc34.x86_64 84/148 Installing : expat-2.2.10-1.fc34.x86_64 85/148 Installing : libmetalink-0.1.3-13.fc33.x86_64 86/148 Installing : keyutils-libs-1.6.1-1.fc34.x86_64 87/148 Installing : libbrotli-1.0.9-3.fc34.x86_64 88/148 Installing : libeconf-0.3.8-4.fc33.x86_64 89/148 Installing : libgomp-11.0.0-0.13.fc34.x86_64 90/148 Installing : libgpg-error-1.41-1.fc34.x86_64 91/148 Installing : libgcrypt-1.8.7-1.fc34.x86_64 92/148 Installing : libnghttp2-1.42.0-1.fc34.x86_64 93/148 Installing : libpkgconf-1.7.3-5.fc34.x86_64 94/148 Installing : pkgconf-1.7.3-5.fc34.x86_64 95/148 Installing : pkgconf-pkg-config-1.7.3-5.fc34.x86_64 96/148 Installing : libsigsegv-2.11-11.fc33.x86_64 97/148 Installing : gawk-5.1.0-2.fc33.x86_64 98/148 Installing : libsmartcols-2.36.1-3.fc34.x86_64 99/148 Installing : libtasn1-4.16.0-3.fc33.x86_64 100/148 Installing : p11-kit-trust-0.23.22-1.fc34.x86_64 101/148 Running scriptlet: p11-kit-trust-0.23.22-1.fc34.x86_64 101/148 Installing : libtool-ltdl-2.4.6-38.fc34.x86_64 102/148 Installing : libverto-0.3.0-11.fc34.x86_64 103/148 Installing : pcre-8.44-3.fc34.x86_64 104/148 Installing : grep-3.6-1.fc34.x86_64 105/148 Installing : xz-5.2.5-4.fc34.x86_64 106/148 Installing : xxhash-libs-0.8.0-1.fc33.x86_64 107/148 Installing : coreutils-common-8.32-15.fc34.x86_64 108/148 Installing : openssl-libs-1:1.1.1i-1.fc34.x86_64 109/148 Installing : coreutils-8.32-15.fc34.x86_64 110/148 Running scriptlet: ca-certificates-2020.2.41-6.fc34.noarch 111/148 Installing : ca-certificates-2020.2.41-6.fc34.noarch 111/148 Running scriptlet: ca-certificates-2020.2.41-6.fc34.noarch 111/148 Installing : krb5-libs-1.19-0.beta2.1.fc34.x86_64 112/148 Installing : libblkid-2.36.1-3.fc34.x86_64 113/148 Running scriptlet: libblkid-2.36.1-3.fc34.x86_64 113/148 Installing : libtirpc-1.3.1-0.fc34.x86_64 114/148 Installing : gzip-1.10-3.fc33.x86_64 115/148 Installing : cracklib-2.9.6-24.fc33.x86_64 116/148 Installing : libnsl2-1.3.0-1.fc34.x86_64 117/148 Installing : libpwquality-1.4.4-1.fc34.x86_64 118/148 Installing : pam-1.5.1-2.fc34.x86_64 119/148 Installing : libfdisk-2.36.1-3.fc34.x86_64 120/148 Installing : libmount-2.36.1-3.fc34.x86_64 121/148 Installing : cyrus-sasl-lib-2.1.27-6.fc33.x86_64 122/148 Installing : openldap-2.4.56-4.fc34.x86_64 123/148 Installing : libssh-0.9.5-1.fc34.x86_64 124/148 Installing : libcurl-7.74.0-2.fc34.x86_64 125/148 Installing : elfutils-libs-0.182-2.fc34.x86_64 126/148 Installing : elfutils-debuginfod-client-0.182-2.fc34.x86_64 127/148 Installing : binutils-gold-2.35.1-21.fc34.x86_64 128/148 Installing : binutils-2.35.1-21.fc34.x86_64 129/148 Running scriptlet: binutils-2.35.1-21.fc34.x86_64 129/148 Installing : elfutils-0.182-2.fc34.x86_64 130/148 Installing : gdb-minimal-10.1-2.fc34.x86_64 131/148 Installing : curl-7.74.0-2.fc34.x86_64 132/148 Installing : guile22-2.2.7-1.fc34.x86_64 133/148 Installing : systemd-libs-247.2-1.fc34.x86_64 134/148 Running scriptlet: systemd-libs-247.2-1.fc34.x86_64 134/148 Installing : libarchive-3.5.1-1.fc34.x86_64 135/148 Installing : rpm-4.16.1.2-1.fc34.x86_64 136/148 Installing : rpm-libs-4.16.1.2-1.fc34.x86_64 137/148 Installing : rpm-build-libs-4.16.1.2-1.fc34.x86_64 138/148 Installing : efi-srpm-macros-4-5.fc33.noarch 139/148 Installing : fonts-srpm-macros-1:2.0.5-4.fc33.noarch 140/148 Installing : go-srpm-macros-3.0.9-1.fc34.noarch 141/148 Installing : lua-srpm-macros-1-2.fc34.noarch 142/148 Installing : python-srpm-macros-3.9-11.fc34.noarch 143/148 Installing : redhat-rpm-config-178-1.fc34.noarch 144/148 Installing : rpm-build-4.16.1.2-1.fc34.x86_64 145/148 Installing : util-linux-2.36.1-3.fc34.x86_64 146/148 Running scriptlet: util-linux-2.36.1-3.fc34.x86_64 146/148 Installing : make-1:4.3-2.fc33.x86_64 147/148 Installing : which-2.21-20.fc33.x86_64 148/148 Running scriptlet: filesystem-3.14-4.fc34.x86_64 148/148 Running scriptlet: ca-certificates-2020.2.41-6.fc34.noarch 148/148 Running scriptlet: rpm-4.16.1.2-1.fc34.x86_64 148/148 Running scriptlet: which-2.21-20.fc33.x86_64 148/148 Verifying : alternatives-1.14-3.fc33.x86_64 1/148 Verifying : audit-libs-3.0-1.fc34.x86_64 2/148 Verifying : basesystem-11-10.fc33.noarch 3/148 Verifying : bash-5.1.0-1.fc34.x86_64 4/148 Verifying : binutils-2.35.1-21.fc34.x86_64 5/148 Verifying : binutils-gold-2.35.1-21.fc34.x86_64 6/148 Verifying : bzip2-1.0.8-4.fc33.x86_64 7/148 Verifying : bzip2-libs-1.0.8-4.fc33.x86_64 8/148 Verifying : ca-certificates-2020.2.41-6.fc34.noarch 9/148 Verifying : coreutils-8.32-15.fc34.x86_64 10/148 Verifying : coreutils-common-8.32-15.fc34.x86_64 11/148 Verifying : cpio-2.13-8.fc33.x86_64 12/148 Verifying : cracklib-2.9.6-24.fc33.x86_64 13/148 Verifying : crypto-policies-20200918-1.git85dccc5.fc34.noarc 14/148 Verifying : curl-7.74.0-2.fc34.x86_64 15/148 Verifying : cyrus-sasl-lib-2.1.27-6.fc33.x86_64 16/148 Verifying : diffutils-3.7-7.fc34.x86_64 17/148 Verifying : dwz-0.13-4.fc33.x86_64 18/148 Verifying : ed-1.14.2-9.fc33.x86_64 19/148 Verifying : efi-srpm-macros-4-5.fc33.noarch 20/148 Verifying : elfutils-0.182-2.fc34.x86_64 21/148 Verifying : elfutils-debuginfod-client-0.182-2.fc34.x86_64 22/148 Verifying : elfutils-default-yama-scope-0.182-2.fc34.noarch 23/148 Verifying : elfutils-libelf-0.182-2.fc34.x86_64 24/148 Verifying : elfutils-libs-0.182-2.fc34.x86_64 25/148 Verifying : expat-2.2.10-1.fc34.x86_64 26/148 Verifying : fedora-gpg-keys-34-0.8.noarch 27/148 Verifying : fedora-release-34-0.10.noarch 28/148 Verifying : fedora-release-common-34-0.10.noarch 29/148 Verifying : fedora-release-identity-basic-34-0.10.noarch 30/148 Verifying : fedora-repos-34-0.8.noarch 31/148 Verifying : fedora-repos-rawhide-34-0.8.noarch 32/148 Verifying : file-5.39-4.fc34.x86_64 33/148 Verifying : file-libs-5.39-4.fc34.x86_64 34/148 Verifying : filesystem-3.14-4.fc34.x86_64 35/148 Verifying : findutils-1:4.8.0-1.fc34.x86_64 36/148 Verifying : fonts-srpm-macros-1:2.0.5-4.fc33.noarch 37/148 Verifying : fpc-srpm-macros-1.3-2.fc33.noarch 38/148 Verifying : gawk-5.1.0-2.fc33.x86_64 39/148 Verifying : gc-8.0.4-4.fc33.x86_64 40/148 Verifying : gdb-minimal-10.1-2.fc34.x86_64 41/148 Verifying : ghc-srpm-macros-1.5.0-3.fc33.noarch 42/148 Verifying : glibc-2.32.9000-26.fc34.x86_64 43/148 Verifying : glibc-common-2.32.9000-26.fc34.x86_64 44/148 Verifying : glibc-minimal-langpack-2.32.9000-26.fc34.x86_64 45/148 Verifying : gmp-1:6.2.0-5.fc34.x86_64 46/148 Verifying : gnat-srpm-macros-4-12.fc33.noarch 47/148 Verifying : go-srpm-macros-3.0.9-1.fc34.noarch 48/148 Verifying : grep-3.6-1.fc34.x86_64 49/148 Verifying : guile22-2.2.7-1.fc34.x86_64 50/148 Verifying : gzip-1.10-3.fc33.x86_64 51/148 Verifying : info-6.7-8.fc33.x86_64 52/148 Verifying : kernel-srpm-macros-1.0-3.fc33.noarch 53/148 Verifying : keyutils-libs-1.6.1-1.fc34.x86_64 54/148 Verifying : krb5-libs-1.19-0.beta2.1.fc34.x86_64 55/148 Verifying : libacl-2.2.53-9.fc34.x86_64 56/148 Verifying : libarchive-3.5.1-1.fc34.x86_64 57/148 Verifying : libattr-2.4.48-10.fc33.x86_64 58/148 Verifying : libblkid-2.36.1-3.fc34.x86_64 59/148 Verifying : libbrotli-1.0.9-3.fc34.x86_64 60/148 Verifying : libcap-2.44-1.fc34.x86_64 61/148 Verifying : libcap-ng-0.8.2-1.fc34.x86_64 62/148 Verifying : libcom_err-1.45.6-4.fc33.x86_64 63/148 Verifying : libcurl-7.74.0-2.fc34.x86_64 64/148 Verifying : libdb-5.3.28-45.fc34.x86_64 65/148 Verifying : libeconf-0.3.8-4.fc33.x86_64 66/148 Verifying : libfdisk-2.36.1-3.fc34.x86_64 67/148 Verifying : libffi-3.1-27.fc34.x86_64 68/148 Verifying : libgcc-11.0.0-0.13.fc34.x86_64 69/148 Verifying : libgcrypt-1.8.7-1.fc34.x86_64 70/148 Verifying : libgomp-11.0.0-0.13.fc34.x86_64 71/148 Verifying : libgpg-error-1.41-1.fc34.x86_64 72/148 Verifying : libidn2-2.3.0-4.fc34.x86_64 73/148 Verifying : libmetalink-0.1.3-13.fc33.x86_64 74/148 Verifying : libmount-2.36.1-3.fc34.x86_64 75/148 Verifying : libnghttp2-1.42.0-1.fc34.x86_64 76/148 Verifying : libnsl2-1.3.0-1.fc34.x86_64 77/148 Verifying : libpkgconf-1.7.3-5.fc34.x86_64 78/148 Verifying : libpsl-0.21.1-2.fc33.x86_64 79/148 Verifying : libpwquality-1.4.4-1.fc34.x86_64 80/148 Verifying : libselinux-3.1-6.fc34.x86_64 81/148 Verifying : libsemanage-3.1-6.fc34.x86_64 82/148 Verifying : libsepol-3.1-5.fc34.x86_64 83/148 Verifying : libsigsegv-2.11-11.fc33.x86_64 84/148 Verifying : libsmartcols-2.36.1-3.fc34.x86_64 85/148 Verifying : libssh-0.9.5-1.fc34.x86_64 86/148 Verifying : libssh-config-0.9.5-1.fc34.noarch 87/148 Verifying : libstdc++-11.0.0-0.13.fc34.x86_64 88/148 Verifying : libtasn1-4.16.0-3.fc33.x86_64 89/148 Verifying : libtirpc-1.3.1-0.fc34.x86_64 90/148 Verifying : libtool-ltdl-2.4.6-38.fc34.x86_64 91/148 Verifying : libunistring-0.9.10-9.fc33.x86_64 92/148 Verifying : libutempter-1.2.1-3.fc34.x86_64 93/148 Verifying : libuuid-2.36.1-3.fc34.x86_64 94/148 Verifying : libverto-0.3.0-11.fc34.x86_64 95/148 Verifying : libxcrypt-4.4.17-1.fc34.x86_64 96/148 Verifying : libxml2-2.9.10-9.fc34.x86_64 97/148 Verifying : libzstd-1.4.7-1.fc34.x86_64 98/148 Verifying : lua-libs-5.4.2-1.fc34.x86_64 99/148 Verifying : lua-srpm-macros-1-2.fc34.noarch 100/148 Verifying : lz4-libs-1.9.3-1.fc34.x86_64 101/148 Verifying : make-1:4.3-2.fc33.x86_64 102/148 Verifying : mpfr-4.1.0-2.fc33.x86_64 103/148 Verifying : ncurses-base-6.2-3.20200222.fc33.noarch 104/148 Verifying : ncurses-libs-6.2-3.20200222.fc33.x86_64 105/148 Verifying : nim-srpm-macros-3-3.fc33.noarch 106/148 Verifying : ocaml-srpm-macros-6-3.fc33.noarch 107/148 Verifying : openblas-srpm-macros-2-8.fc33.noarch 108/148 Verifying : openldap-2.4.56-4.fc34.x86_64 109/148 Verifying : openssl-libs-1:1.1.1i-1.fc34.x86_64 110/148 Verifying : p11-kit-0.23.22-1.fc34.x86_64 111/148 Verifying : p11-kit-trust-0.23.22-1.fc34.x86_64 112/148 Verifying : pam-1.5.1-2.fc34.x86_64 113/148 Verifying : patch-2.7.6-13.fc33.x86_64 114/148 Verifying : pcre-8.44-3.fc34.x86_64 115/148 Verifying : pcre2-10.36-2.fc34.x86_64 116/148 Verifying : pcre2-syntax-10.36-2.fc34.noarch 117/148 Verifying : perl-srpm-macros-1-38.fc33.noarch 118/148 Verifying : pkgconf-1.7.3-5.fc34.x86_64 119/148 Verifying : pkgconf-m4-1.7.3-5.fc34.noarch 120/148 Verifying : pkgconf-pkg-config-1.7.3-5.fc34.x86_64 121/148 Verifying : popt-1.18-2.fc34.x86_64 122/148 Verifying : publicsuffix-list-dafsa-20190417-4.fc33.noarch 123/148 Verifying : python-srpm-macros-3.9-11.fc34.noarch 124/148 Verifying : qt5-srpm-macros-5.15.2-1.fc34.noarch 125/148 Verifying : readline-8.1-1.fc34.x86_64 126/148 Verifying : redhat-rpm-config-178-1.fc34.noarch 127/148 Verifying : rpm-4.16.1.2-1.fc34.x86_64 128/148 Verifying : rpm-build-4.16.1.2-1.fc34.x86_64 129/148 Verifying : rpm-build-libs-4.16.1.2-1.fc34.x86_64 130/148 Verifying : rpm-libs-4.16.1.2-1.fc34.x86_64 131/148 Verifying : rust-srpm-macros-17-1.fc34.noarch 132/148 Verifying : sed-4.8-6.fc34.x86_64 133/148 Verifying : setup-2.13.7-2.fc33.noarch 134/148 Verifying : shadow-utils-2:4.8.1-6.fc34.x86_64 135/148 Verifying : sqlite-libs-3.34.0-1.fc34.x86_64 136/148 Verifying : systemd-libs-247.2-1.fc34.x86_64 137/148 Verifying : tar-2:1.32-6.fc33.x86_64 138/148 Verifying : tzdata-2020f-1.fc34.noarch 139/148 Verifying : unzip-6.0-49.fc33.x86_64 140/148 Verifying : util-linux-2.36.1-3.fc34.x86_64 141/148 Verifying : which-2.21-20.fc33.x86_64 142/148 Verifying : xxhash-libs-0.8.0-1.fc33.x86_64 143/148 Verifying : xz-5.2.5-4.fc34.x86_64 144/148 Verifying : xz-libs-5.2.5-4.fc34.x86_64 145/148 Verifying : zip-3.0-27.fc33.x86_64 146/148 Verifying : zlib-1.2.11-23.fc34.x86_64 147/148 Verifying : zstd-1.4.7-1.fc34.x86_64 148/148 Installed: alternatives-1.14-3.fc33.x86_64 audit-libs-3.0-1.fc34.x86_64 basesystem-11-10.fc33.noarch bash-5.1.0-1.fc34.x86_64 binutils-2.35.1-21.fc34.x86_64 binutils-gold-2.35.1-21.fc34.x86_64 bzip2-1.0.8-4.fc33.x86_64 bzip2-libs-1.0.8-4.fc33.x86_64 ca-certificates-2020.2.41-6.fc34.noarch coreutils-8.32-15.fc34.x86_64 coreutils-common-8.32-15.fc34.x86_64 cpio-2.13-8.fc33.x86_64 cracklib-2.9.6-24.fc33.x86_64 crypto-policies-20200918-1.git85dccc5.fc34.noarch curl-7.74.0-2.fc34.x86_64 cyrus-sasl-lib-2.1.27-6.fc33.x86_64 diffutils-3.7-7.fc34.x86_64 dwz-0.13-4.fc33.x86_64 ed-1.14.2-9.fc33.x86_64 efi-srpm-macros-4-5.fc33.noarch elfutils-0.182-2.fc34.x86_64 elfutils-debuginfod-client-0.182-2.fc34.x86_64 elfutils-default-yama-scope-0.182-2.fc34.noarch elfutils-libelf-0.182-2.fc34.x86_64 elfutils-libs-0.182-2.fc34.x86_64 expat-2.2.10-1.fc34.x86_64 fedora-gpg-keys-34-0.8.noarch fedora-release-34-0.10.noarch fedora-release-common-34-0.10.noarch fedora-release-identity-basic-34-0.10.noarch fedora-repos-34-0.8.noarch fedora-repos-rawhide-34-0.8.noarch file-5.39-4.fc34.x86_64 file-libs-5.39-4.fc34.x86_64 filesystem-3.14-4.fc34.x86_64 findutils-1:4.8.0-1.fc34.x86_64 fonts-srpm-macros-1:2.0.5-4.fc33.noarch fpc-srpm-macros-1.3-2.fc33.noarch gawk-5.1.0-2.fc33.x86_64 gc-8.0.4-4.fc33.x86_64 gdb-minimal-10.1-2.fc34.x86_64 ghc-srpm-macros-1.5.0-3.fc33.noarch glibc-2.32.9000-26.fc34.x86_64 glibc-common-2.32.9000-26.fc34.x86_64 glibc-minimal-langpack-2.32.9000-26.fc34.x86_64 gmp-1:6.2.0-5.fc34.x86_64 gnat-srpm-macros-4-12.fc33.noarch go-srpm-macros-3.0.9-1.fc34.noarch grep-3.6-1.fc34.x86_64 guile22-2.2.7-1.fc34.x86_64 gzip-1.10-3.fc33.x86_64 info-6.7-8.fc33.x86_64 kernel-srpm-macros-1.0-3.fc33.noarch keyutils-libs-1.6.1-1.fc34.x86_64 krb5-libs-1.19-0.beta2.1.fc34.x86_64 libacl-2.2.53-9.fc34.x86_64 libarchive-3.5.1-1.fc34.x86_64 libattr-2.4.48-10.fc33.x86_64 libblkid-2.36.1-3.fc34.x86_64 libbrotli-1.0.9-3.fc34.x86_64 libcap-2.44-1.fc34.x86_64 libcap-ng-0.8.2-1.fc34.x86_64 libcom_err-1.45.6-4.fc33.x86_64 libcurl-7.74.0-2.fc34.x86_64 libdb-5.3.28-45.fc34.x86_64 libeconf-0.3.8-4.fc33.x86_64 libfdisk-2.36.1-3.fc34.x86_64 libffi-3.1-27.fc34.x86_64 libgcc-11.0.0-0.13.fc34.x86_64 libgcrypt-1.8.7-1.fc34.x86_64 libgomp-11.0.0-0.13.fc34.x86_64 libgpg-error-1.41-1.fc34.x86_64 libidn2-2.3.0-4.fc34.x86_64 libmetalink-0.1.3-13.fc33.x86_64 libmount-2.36.1-3.fc34.x86_64 libnghttp2-1.42.0-1.fc34.x86_64 libnsl2-1.3.0-1.fc34.x86_64 libpkgconf-1.7.3-5.fc34.x86_64 libpsl-0.21.1-2.fc33.x86_64 libpwquality-1.4.4-1.fc34.x86_64 libselinux-3.1-6.fc34.x86_64 libsemanage-3.1-6.fc34.x86_64 libsepol-3.1-5.fc34.x86_64 libsigsegv-2.11-11.fc33.x86_64 libsmartcols-2.36.1-3.fc34.x86_64 libssh-0.9.5-1.fc34.x86_64 libssh-config-0.9.5-1.fc34.noarch libstdc++-11.0.0-0.13.fc34.x86_64 libtasn1-4.16.0-3.fc33.x86_64 libtirpc-1.3.1-0.fc34.x86_64 libtool-ltdl-2.4.6-38.fc34.x86_64 libunistring-0.9.10-9.fc33.x86_64 libutempter-1.2.1-3.fc34.x86_64 libuuid-2.36.1-3.fc34.x86_64 libverto-0.3.0-11.fc34.x86_64 libxcrypt-4.4.17-1.fc34.x86_64 libxml2-2.9.10-9.fc34.x86_64 libzstd-1.4.7-1.fc34.x86_64 lua-libs-5.4.2-1.fc34.x86_64 lua-srpm-macros-1-2.fc34.noarch lz4-libs-1.9.3-1.fc34.x86_64 make-1:4.3-2.fc33.x86_64 mpfr-4.1.0-2.fc33.x86_64 ncurses-base-6.2-3.20200222.fc33.noarch ncurses-libs-6.2-3.20200222.fc33.x86_64 nim-srpm-macros-3-3.fc33.noarch ocaml-srpm-macros-6-3.fc33.noarch openblas-srpm-macros-2-8.fc33.noarch openldap-2.4.56-4.fc34.x86_64 openssl-libs-1:1.1.1i-1.fc34.x86_64 p11-kit-0.23.22-1.fc34.x86_64 p11-kit-trust-0.23.22-1.fc34.x86_64 pam-1.5.1-2.fc34.x86_64 patch-2.7.6-13.fc33.x86_64 pcre-8.44-3.fc34.x86_64 pcre2-10.36-2.fc34.x86_64 pcre2-syntax-10.36-2.fc34.noarch perl-srpm-macros-1-38.fc33.noarch pkgconf-1.7.3-5.fc34.x86_64 pkgconf-m4-1.7.3-5.fc34.noarch pkgconf-pkg-config-1.7.3-5.fc34.x86_64 popt-1.18-2.fc34.x86_64 publicsuffix-list-dafsa-20190417-4.fc33.noarch python-srpm-macros-3.9-11.fc34.noarch qt5-srpm-macros-5.15.2-1.fc34.noarch readline-8.1-1.fc34.x86_64 redhat-rpm-config-178-1.fc34.noarch rpm-4.16.1.2-1.fc34.x86_64 rpm-build-4.16.1.2-1.fc34.x86_64 rpm-build-libs-4.16.1.2-1.fc34.x86_64 rpm-libs-4.16.1.2-1.fc34.x86_64 rust-srpm-macros-17-1.fc34.noarch sed-4.8-6.fc34.x86_64 setup-2.13.7-2.fc33.noarch shadow-utils-2:4.8.1-6.fc34.x86_64 sqlite-libs-3.34.0-1.fc34.x86_64 systemd-libs-247.2-1.fc34.x86_64 tar-2:1.32-6.fc33.x86_64 tzdata-2020f-1.fc34.noarch unzip-6.0-49.fc33.x86_64 util-linux-2.36.1-3.fc34.x86_64 which-2.21-20.fc33.x86_64 xxhash-libs-0.8.0-1.fc33.x86_64 xz-5.2.5-4.fc34.x86_64 xz-libs-5.2.5-4.fc34.x86_64 zip-3.0-27.fc33.x86_64 zlib-1.2.11-23.fc34.x86_64 zstd-1.4.7-1.fc34.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: pkgconf-pkg-config-1.7.3-5.fc34.x86_64 kernel-srpm-macros-1.0-3.fc33.noarch fedora-repos-34-0.8.noarch efi-srpm-macros-4-5.fc33.noarch pcre-8.44-3.fc34.x86_64 elfutils-default-yama-scope-0.182-2.fc34.noarch p11-kit-0.23.22-1.fc34.x86_64 util-linux-2.36.1-3.fc34.x86_64 libssh-config-0.9.5-1.fc34.noarch python-srpm-macros-3.9-11.fc34.noarch filesystem-3.14-4.fc34.x86_64 libdb-5.3.28-45.fc34.x86_64 curl-7.74.0-2.fc34.x86_64 libunistring-0.9.10-9.fc33.x86_64 glibc-common-2.32.9000-26.fc34.x86_64 libbrotli-1.0.9-3.fc34.x86_64 libcurl-7.74.0-2.fc34.x86_64 libtool-ltdl-2.4.6-38.fc34.x86_64 fonts-srpm-macros-2.0.5-4.fc33.noarch rpm-build-4.16.1.2-1.fc34.x86_64 pkgconf-m4-1.7.3-5.fc34.noarch libuuid-2.36.1-3.fc34.x86_64 libpwquality-1.4.4-1.fc34.x86_64 xz-libs-5.2.5-4.fc34.x86_64 zlib-1.2.11-23.fc34.x86_64 p11-kit-trust-0.23.22-1.fc34.x86_64 elfutils-0.182-2.fc34.x86_64 rpm-build-libs-4.16.1.2-1.fc34.x86_64 keyutils-libs-1.6.1-1.fc34.x86_64 info-6.7-8.fc33.x86_64 libzstd-1.4.7-1.fc34.x86_64 libffi-3.1-27.fc34.x86_64 redhat-rpm-config-178-1.fc34.noarch popt-1.18-2.fc34.x86_64 elfutils-libs-0.182-2.fc34.x86_64 fpc-srpm-macros-1.3-2.fc33.noarch elfutils-libelf-0.182-2.fc34.x86_64 xz-5.2.5-4.fc34.x86_64 cracklib-2.9.6-24.fc33.x86_64 libsepol-3.1-5.fc34.x86_64 findutils-4.8.0-1.fc34.x86_64 bzip2-1.0.8-4.fc33.x86_64 libpkgconf-1.7.3-5.fc34.x86_64 perl-srpm-macros-1-38.fc33.noarch rpm-4.16.1.2-1.fc34.x86_64 ca-certificates-2020.2.41-6.fc34.noarch mpfr-4.1.0-2.fc33.x86_64 libidn2-2.3.0-4.fc34.x86_64 libssh-0.9.5-1.fc34.x86_64 pam-1.5.1-2.fc34.x86_64 sqlite-libs-3.34.0-1.fc34.x86_64 expat-2.2.10-1.fc34.x86_64 libverto-0.3.0-11.fc34.x86_64 fedora-gpg-keys-34-0.8.noarch libsmartcols-2.36.1-3.fc34.x86_64 libutempter-1.2.1-3.fc34.x86_64 file-5.39-4.fc34.x86_64 coreutils-common-8.32-15.fc34.x86_64 lua-libs-5.4.2-1.fc34.x86_64 tzdata-2020f-1.fc34.noarch gawk-5.1.0-2.fc33.x86_64 lua-srpm-macros-1-2.fc34.noarch libsemanage-3.1-6.fc34.x86_64 libtasn1-4.16.0-3.fc33.x86_64 crypto-policies-20200918-1.git85dccc5.fc34.noarch alternatives-1.14-3.fc33.x86_64 libfdisk-2.36.1-3.fc34.x86_64 bzip2-libs-1.0.8-4.fc33.x86_64 pkgconf-1.7.3-5.fc34.x86_64 libxcrypt-4.4.17-1.fc34.x86_64 krb5-libs-1.19-0.beta2.1.fc34.x86_64 readline-8.1-1.fc34.x86_64 diffutils-3.7-7.fc34.x86_64 make-4.3-2.fc33.x86_64 cpio-2.13-8.fc33.x86_64 gzip-1.10-3.fc33.x86_64 openldap-2.4.56-4.fc34.x86_64 audit-libs-3.0-1.fc34.x86_64 fedora-release-identity-basic-34-0.10.noarch lz4-libs-1.9.3-1.fc34.x86_64 libcap-2.44-1.fc34.x86_64 shadow-utils-4.8.1-6.fc34.x86_64 grep-3.6-1.fc34.x86_64 libcom_err-1.45.6-4.fc33.x86_64 openssl-libs-1.1.1i-1.fc34.x86_64 qt5-srpm-macros-5.15.2-1.fc34.noarch file-libs-5.39-4.fc34.x86_64 libacl-2.2.53-9.fc34.x86_64 publicsuffix-list-dafsa-20190417-4.fc33.noarch nim-srpm-macros-3-3.fc33.noarch gc-8.0.4-4.fc33.x86_64 rpm-libs-4.16.1.2-1.fc34.x86_64 elfutils-debuginfod-client-0.182-2.fc34.x86_64 ncurses-libs-6.2-3.20200222.fc33.x86_64 rust-srpm-macros-17-1.fc34.noarch libgpg-error-1.41-1.fc34.x86_64 fedora-release-34-0.10.noarch bash-5.1.0-1.fc34.x86_64 libattr-2.4.48-10.fc33.x86_64 libnsl2-1.3.0-1.fc34.x86_64 binutils-2.35.1-21.fc34.x86_64 gmp-6.2.0-5.fc34.x86_64 dwz-0.13-4.fc33.x86_64 libsigsegv-2.11-11.fc33.x86_64 libgomp-11.0.0-0.13.fc34.x86_64 which-2.21-20.fc33.x86_64 binutils-gold-2.35.1-21.fc34.x86_64 gdb-minimal-10.1-2.fc34.x86_64 systemd-libs-247.2-1.fc34.x86_64 go-srpm-macros-3.0.9-1.fc34.noarch sed-4.8-6.fc34.x86_64 ocaml-srpm-macros-6-3.fc33.noarch ncurses-base-6.2-3.20200222.fc33.noarch libeconf-0.3.8-4.fc33.x86_64 libtirpc-1.3.1-0.fc34.x86_64 openblas-srpm-macros-2-8.fc33.noarch libpsl-0.21.1-2.fc33.x86_64 libstdc++-11.0.0-0.13.fc34.x86_64 coreutils-8.32-15.fc34.x86_64 ed-1.14.2-9.fc33.x86_64 libnghttp2-1.42.0-1.fc34.x86_64 zstd-1.4.7-1.fc34.x86_64 glibc-minimal-langpack-2.32.9000-26.fc34.x86_64 xxhash-libs-0.8.0-1.fc33.x86_64 ghc-srpm-macros-1.5.0-3.fc33.noarch glibc-2.32.9000-26.fc34.x86_64 libxml2-2.9.10-9.fc34.x86_64 guile22-2.2.7-1.fc34.x86_64 fedora-repos-rawhide-34-0.8.noarch basesystem-11-10.fc33.noarch setup-2.13.7-2.fc33.noarch libgcrypt-1.8.7-1.fc34.x86_64 libmetalink-0.1.3-13.fc33.x86_64 libgcc-11.0.0-0.13.fc34.x86_64 patch-2.7.6-13.fc33.x86_64 libblkid-2.36.1-3.fc34.x86_64 libmount-2.36.1-3.fc34.x86_64 cyrus-sasl-lib-2.1.27-6.fc33.x86_64 libarchive-3.5.1-1.fc34.x86_64 pcre2-syntax-10.36-2.fc34.noarch unzip-6.0-49.fc33.x86_64 libselinux-3.1-6.fc34.x86_64 fedora-release-common-34-0.10.noarch zip-3.0-27.fc33.x86_64 tar-1.32-6.fc33.x86_64 libcap-ng-0.8.2-1.fc34.x86_64 gnat-srpm-macros-4-12.fc33.noarch pcre2-10.36-2.fc34.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1610841600 Wrote: /builddir/build/SRPMS/bout++-4.3.2-4.fc34.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1610893659.312021/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1610893659.312021/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1610893659.312021/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/tmp/copr-rpmbuild-3758e8q1/obtain-sources/bout++/bout++.spec) Config(child) 1 minutes 8 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/bout++-4.3.2-4.fc34.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1610893728.649060 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.8 starting (python version = 3.9.0, NVR = mock-2.8-1.fc33)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/bout++-4.3.2-4.fc34.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1610893728.649060/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.8 INFO: Mock Version: 2.8 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Copr repository 97 kB/s | 3.7 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 177 kB/s | 3.8 kB 00:00 fedora 93 kB/s | 12 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for bout++-4.3.2-4.fc34.src.rpm Start: build setup for bout++-4.3.2-4.fc34.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1610841600 Wrote: /builddir/build/SRPMS/bout++-4.3.2-4.fc34.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Copr repository 206 kB/s | 3.7 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 163 kB/s | 3.8 kB 00:00 fedora 96 kB/s | 12 kB 00:00 Package make-1:4.3-2.fc33.x86_64 is already installed. Dependencies resolved. =================================================================================================================================================== Package Arch Version Repository Size =================================================================================================================================================== Installing: autoconf  noarch 2.69-35.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 666 k autoconf-archive  noarch 2019.01.06-6.fc33 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 589 k automake  noarch 1.16.2-3.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 664 k doxygen  x86_64 1:1.9.1-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 M environment-modules  x86_64 4.6.1-1.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 407 k fftw-devel  x86_64 3.3.8-9.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130 k flexiblas-devel  x86_64 3.0.4-2.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k gcc-c++  x86_64 11.0.0-0.13.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 M gettext-devel  x86_64 0.21-3.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201 k hdf5-devel  x86_64 1.10.6-4.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M hdf5-mpich-devel  x86_64 1.10.6-4.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M hdf5-openmpi-devel  x86_64 1.10.6-4.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M m4  x86_64 1.4.18-16.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 211 k mpark-variant-devel  x86_64 1.4.0-4.fc33 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27 k mpich-devel  x86_64 3.3.2-8.fc34 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 901 k netcdf-cxx4-devel  x86_64 4.3.1-3.fc33 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python3-netcdf4-1.5.4-1.fc34.x86_64.rp 3.8 MB/s | 512 kB 00:00 (8/347): python3-numpy-1.20.0-1.rc2.fc34.x86_64 22 MB/s | 4.8 MB 00:00 (9/347): MUMPS-common-5.3.5-1.fc34.noarch.rpm 18 MB/s | 801 kB 00:00 (10/347): rdma-core-32.0-1.fc34.x86_64.rpm 273 kB/s | 57 kB 00:00 (11/347): MUMPS-mpich-5.3.5-1.fc34.x86_64.rpm 10 MB/s | 1.7 MB 00:00 (12/347): acl-2.2.53-9.fc34.x86_64.rpm 8.8 MB/s | 72 kB 00:00 (13/347): MUMPS-openmpi-5.3.5-1.fc34.x86_64.rpm 10 MB/s | 1.8 MB 00:00 (14/347): adobe-mappings-cmap-20171205-9.fc33.n 26 MB/s | 1.9 MB 00:00 (15/347): adobe-mappings-cmap-deprecated-201712 3.4 MB/s | 109 kB 00:00 (16/347): annobin-9.57-1.fc34.x86_64.rpm 13 MB/s | 135 kB 00:00 (17/347): adobe-mappings-pdf-20180407-7.fc33.no 23 MB/s | 668 kB 00:00 (18/347): atk-2.36.0-2.fc33.x86_64.rpm 16 MB/s | 273 kB 00:00 (19/347): autoconf-2.69-35.fc34.noarch.rpm 22 MB/s | 666 kB 00:00 (20/347): autoconf-archive-2019.01.06-6.fc33.no 21 MB/s | 589 kB 00:00 (21/347): avahi-libs-0.8-6.fc34.x86_64.rpm 7.1 MB/s 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dejavu-sans-fonts-2.37-15.fc34.noarch 13 MB/s | 1.3 MB 00:00 (37/347): device-mapper-1.02.173-1.fc33.x86_64. 8.0 MB/s | 142 kB 00:00 (38/347): device-mapper-libs-1.02.173-1.fc33.x8 9.3 MB/s | 178 kB 00:00 (39/347): emacs-filesystem-27.1-2.fc34.noarch.r 1.1 MB/s | 8.2 kB 00:00 (40/347): environment-modules-4.6.1-1.fc34.x86_ 14 MB/s | 407 kB 00:00 (41/347): fftw-3.3.8-9.fc34.x86_64.rpm 4.4 MB/s | 45 kB 00:00 (42/347): fftw-devel-3.3.8-9.fc34.x86_64.rpm 8.0 MB/s | 130 kB 00:00 (43/347): fftw-libs-3.3.8-9.fc34.x86_64.rpm 1.4 MB/s | 7.3 kB 00:00 (44/347): fftw-libs-double-3.3.8-9.fc34.x86_64. 21 MB/s | 940 kB 00:00 (45/347): fftw-libs-long-3.3.8-9.fc34.x86_64.rp 16 MB/s | 509 kB 00:00 (46/347): doxygen-1.9.1-1.fc34.x86_64.rpm 22 MB/s | 4.8 MB 00:00 (47/347): fftw-libs-quad-3.3.8-9.fc34.x86_64.rp 15 MB/s | 881 kB 00:00 (48/347): flexiblas-3.0.4-2.fc34.x86_64.rpm 3.4 MB/s | 31 kB 00:00 (49/347): flexiblas-devel-3.0.4-2.fc34.x86_64.r 8.6 MB/s | 100 kB 00:00 (50/347): 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dbus-libs-1:1.12.20-2.fc33.x86_64 295/347 Installing : avahi-libs-0.8-6.fc34.x86_64 296/347 Installing : cups-libs-1:2.3.3op1-1.fc34.x86_64 297/347 Installing : gtk2-2.24.33-2.fc34.x86_64 298/347 Installing : clang-resource-filesystem-11.0.1-4.fc34.x86_64 299/347 Installing : clang-libs-11.0.1-4.fc34.x86_64 300/347 Installing : adobe-mappings-pdf-20180407-7.fc33.noarch 301/347 Installing : libgs-9.53.3-4.fc34.x86_64 302/347 Installing : graphviz-2.44.0-16.fc34.x86_64 303/347 Running scriptlet: graphviz-2.44.0-16.fc34.x86_64 303/347 Installing : acl-2.2.53-9.fc34.x86_64 304/347 Installing : device-mapper-1.02.173-1.fc33.x86_64 305/347 Installing : device-mapper-libs-1.02.173-1.fc33.x86_64 306/347 Installing : cryptsetup-libs-2.3.4-1.fc34.x86_64 307/347 Installing : dbus-1:1.12.20-2.fc33.x86_64 308/347 Installing : systemd-pam-247.2-1.fc34.x86_64 309/347 Installing : libfido2-1.6.0-1.fc34.x86_64 310/347 Running scriptlet: systemd-247.2-1.fc34.x86_64 311/347 Installing : 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Created symlink /etc/systemd/user/sockets.target.wants/dbus.socket → /usr/lib/systemd/user/dbus.socket. Running scriptlet: dbus-broker-24-2.fc34.x86_64 314/347 Installing : dbus-broker-24-2.fc34.x86_64 314/347 Running scriptlet: dbus-broker-24-2.fc34.x86_64 314/347 Created symlink /etc/systemd/system/dbus.service → /usr/lib/systemd/system/dbus-broker.service. Created symlink /etc/systemd/user/dbus.service → /usr/lib/systemd/user/dbus-broker.service. Installing : infinipath-psm-3.3-26_g604758e_open.6.fc34.2.x86 315/347 Installing : libfabric-1.11.2-1.fc34.x86_64 316/347 Installing : openssh-clients-8.4p1-4.fc34.x86_64 317/347 Installing : openmpi-4.0.5-2.fc34.x86_64 318/347 Installing : ptscotch-openmpi-6.1.0-1.fc34.x86_64 319/347 Installing : superlu_dist-openmpi-1:6.1.1-6.fc34.x86_64 320/347 Installing : hypre-openmpi-2.18.2-2.fc34.x86_64 321/347 Installing : hdf5-openmpi-1.10.6-4.fc34.x86_64 322/347 Installing : openmpi-devel-4.0.5-2.fc34.x86_64 323/347 Installing : scalapack-openmpi-2.1.0-7.fc34.x86_64 324/347 Installing : MUMPS-openmpi-5.3.5-1.fc34.x86_64 325/347 Installing : petsc-openmpi-3.14.2-3.fc34.x86_64 326/347 Installing : sundials-openmpi-5.5.0-2.fc34.x86_64 327/347 Installing : sundials-openmpi-devel-5.5.0-2.fc34.x86_64 328/347 Installing : petsc-openmpi-devel-3.14.2-3.fc34.x86_64 329/347 Installing : hdf5-openmpi-devel-1.10.6-4.fc34.x86_64 330/347 Installing : doxygen-1:1.9.1-1.fc34.x86_64 331/347 Installing : python3-sphinx-1:3.3.1-2.fc34.noarch 332/347 Installing : autoconf-archive-2019.01.06-6.fc33.noarch 333/347 Installing : automake-1.16.2-3.fc34.noarch 334/347 Installing : gettext-devel-0.21-3.fc34.x86_64 335/347 Installing : sundials-mpich-devel-5.5.0-2.fc34.x86_64 336/347 Installing : sundials-devel-5.5.0-2.fc34.x86_64 337/347 Installing : petsc-mpich-devel-3.14.2-3.fc34.x86_64 338/347 Installing : netcdf-cxx4-devel-4.3.1-3.fc33.x86_64 339/347 Installing : hdf5-mpich-devel-1.10.6-4.fc34.x86_64 340/347 Installing : annobin-9.57-1.fc34.x86_64 341/347 Installing : gcc-c++-11.0.0-0.13.fc34.x86_64 342/347 Installing : python3-scipy-1.6.0-1.fc34.x86_64 343/347 Installing : python3-netcdf4-1.5.4-1.fc34.x86_64 344/347 Installing : fftw-devel-3.3.8-9.fc34.x86_64 345/347 Installing : flexiblas-devel-3.0.4-2.fc34.x86_64 346/347 Installing : mpark-variant-devel-1.4.0-4.fc33.x86_64 347/347 Running scriptlet: fontconfig-2.13.93-4.fc34.x86_64 347/347 Running scriptlet: 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jasper-libs-2.0.22-1.fc34.x86_64 98/347 Verifying : jbig2dec-libs-0.19-3.fc34.x86_64 99/347 Verifying : jbigkit-libs-2.1-20.fc34.x86_64 100/347 Verifying : json-c-0.14-7.fc33.x86_64 101/347 Verifying : kbd-2.4.0-1.fc34.x86_64 102/347 Verifying : kbd-misc-2.4.0-1.fc34.noarch 103/347 Verifying : kernel-headers-5.11.0-0.rc2.git0.1.fc34.x86_64 104/347 Verifying : kmod-28-1.fc34.x86_64 105/347 Verifying : kmod-libs-28-1.fc34.x86_64 106/347 Verifying : langpacks-core-font-en-3.0-6.fc34.noarch 107/347 Verifying : lasi-1.1.3-4.fc33.x86_64 108/347 Verifying : lcms2-2.11-2.fc33.x86_64 109/347 Verifying : less-551-4.fc33.x86_64 110/347 Verifying : libICE-1.0.10-5.fc34.x86_64 111/347 Verifying : libSM-1.2.3-7.fc34.x86_64 112/347 Verifying : libX11-1.7.0-2.fc34.x86_64 113/347 Verifying : libX11-common-1.7.0-2.fc34.noarch 114/347 Verifying : libX11-xcb-1.7.0-2.fc34.x86_64 115/347 Verifying : libXau-1.0.9-5.fc34.x86_64 116/347 Verifying : libXaw-1.0.13-16.fc34.x86_64 117/347 Verifying : libXcomposite-0.4.5-4.fc34.x86_64 118/347 Verifying : libXcursor-1.2.0-4.fc34.x86_64 119/347 Verifying : libXdamage-1.1.5-4.fc34.x86_64 120/347 Verifying : libXext-1.3.4-5.fc34.x86_64 121/347 Verifying : libXfixes-5.0.3-13.fc34.x86_64 122/347 Verifying : libXft-2.3.3-5.fc34.x86_64 123/347 Verifying : libXi-1.7.10-5.fc34.x86_64 124/347 Verifying : libXinerama-1.1.4-7.fc34.x86_64 125/347 Verifying : libXmu-1.1.3-5.fc34.x86_64 126/347 Verifying : libXpm-3.5.13-4.fc34.x86_64 127/347 Verifying : libXrandr-1.5.2-5.fc34.x86_64 128/347 Verifying : libXrender-0.9.10-13.fc34.x86_64 129/347 Verifying : libXt-1.2.0-3.fc34.x86_64 130/347 Verifying : libXxf86vm-1.1.4-15.fc34.x86_64 131/347 Verifying : libaec-1.0.4-6.fc34.x86_64 132/347 Verifying : libaec-devel-1.0.4-6.fc34.x86_64 133/347 Verifying : libargon2-20171227-5.fc33.x86_64 134/347 Verifying : libcbor-0.7.0-2.fc34.x86_64 135/347 Verifying : libcurl-devel-7.74.0-2.fc34.x86_64 136/347 Verifying : libdatrie-0.2.9-13.fc34.x86_64 137/347 Verifying : libdrm-2.4.103-1.fc34.x86_64 138/347 Verifying : libedit-3.1-33.20191231cvs.fc33.x86_64 139/347 Verifying : libevent-2.1.12-2.fc34.x86_64 140/347 Verifying : libfabric-1.11.2-1.fc34.x86_64 141/347 Verifying : libfido2-1.6.0-1.fc34.x86_64 142/347 Verifying : libfontenc-1.1.3-14.fc34.x86_64 143/347 Verifying : libgfortran-11.0.0-0.13.fc34.x86_64 144/347 Verifying : libglvnd-1:1.3.2-2.fc33.x86_64 145/347 Verifying : libglvnd-glx-1:1.3.2-2.fc33.x86_64 146/347 Verifying : libgs-9.53.3-4.fc34.x86_64 147/347 Verifying : libijs-0.35-12.fc33.x86_64 148/347 Verifying : libimagequant-2.13.1-1.fc34.x86_64 149/347 Verifying : libjpeg-turbo-2.0.5-5.fc33.x86_64 150/347 Verifying : libmcpp-2.7.2-26.fc33.x86_64 151/347 Verifying : libmnl-1.0.4-12.fc33.x86_64 152/347 Verifying : libmpc-1.2.1-1.fc34.x86_64 153/347 Verifying : libnetfilter_conntrack-1.0.7-5.fc33.x86_64 154/347 Verifying : libnfnetlink-1.0.1-18.fc33.x86_64 155/347 Verifying : libnl3-3.5.0-5.fc33.x86_64 156/347 Verifying : libpaper-1.1.28-1.fc34.x86_64 157/347 Verifying : libpcap-14:1.9.1-6.fc34.x86_64 158/347 Verifying : libpciaccess-0.16-3.fc33.x86_64 159/347 Verifying : libpipeline-1.5.3-1.fc34.x86_64 160/347 Verifying : libpng-2:1.6.37-6.fc34.x86_64 161/347 Verifying : libpsm2-11.2.86-7.fc34.x86_64 162/347 Verifying : libquadmath-11.0.0-0.13.fc34.x86_64 163/347 Verifying : libquadmath-devel-11.0.0-0.13.fc34.x86_64 164/347 Verifying : libraqm-0.7.0-6.fc33.x86_64 165/347 Verifying : librsvg2-2.50.2-1.fc34.x86_64 166/347 Verifying : libseccomp-2.5.0-3.fc33.x86_64 167/347 Verifying : libstdc++-devel-11.0.0-0.13.fc34.x86_64 168/347 Verifying : libtextstyle-0.21-3.fc34.x86_64 169/347 Verifying : libthai-0.1.28-5.fc33.x86_64 170/347 Verifying : libtiff-4.1.0-6.fc34.x86_64 171/347 Verifying : libwebp-1.1.0-5.fc33.x86_64 172/347 Verifying : libxcb-1.13.1-6.fc34.x86_64 173/347 Verifying : libxcrypt-devel-4.4.17-1.fc34.x86_64 174/347 Verifying : libxshmfence-1.3-7.fc33.x86_64 175/347 Verifying : llvm-libs-11.0.1-4.fc34.x86_64 176/347 Verifying : m4-1.4.18-16.fc34.x86_64 177/347 Verifying : man-db-2.9.3-2.fc34.x86_64 178/347 Verifying : mcpp-2.7.2-26.fc33.x86_64 179/347 Verifying : mesa-libGL-20.3.3-3.fc34.x86_64 180/347 Verifying : mesa-libGLU-9.0.1-3.fc33.x86_64 181/347 Verifying : mesa-libglapi-20.3.3-3.fc34.x86_64 182/347 Verifying : metis-5.1.0-27.fc34.x86_64 183/347 Verifying : mpark-variant-devel-1.4.0-4.fc33.x86_64 184/347 Verifying : mpich-3.3.2-8.fc34.x86_64 185/347 Verifying : mpich-devel-3.3.2-8.fc34.x86_64 186/347 Verifying : munge-libs-0.5.13-10.fc34.x86_64 187/347 Verifying : ncurses-6.2-3.20200222.fc33.x86_64 188/347 Verifying : netcdf-4.7.3-5.fc34.x86_64 189/347 Verifying : netcdf-cxx4-4.3.1-3.fc33.x86_64 190/347 Verifying : netcdf-cxx4-devel-4.3.1-3.fc33.x86_64 191/347 Verifying : netcdf-devel-4.7.3-5.fc34.x86_64 192/347 Verifying : netpbm-10.92.00-1.fc34.x86_64 193/347 Verifying : nettle-3.7-1.fc34.x86_64 194/347 Verifying : numactl-libs-2.0.14-2.fc34.x86_64 195/347 Verifying : openblas-0.3.12-1.fc34.x86_64 196/347 Verifying : openblas-openmp-0.3.12-1.fc34.x86_64 197/347 Verifying : openblas-openmp64-0.3.12-1.fc34.x86_64 198/347 Verifying : openjpeg2-2.4.0-1.fc34.x86_64 199/347 Verifying : openmpi-4.0.5-2.fc34.x86_64 200/347 Verifying : openmpi-devel-4.0.5-2.fc34.x86_64 201/347 Verifying : opensm-libs-3.3.23-5.fc34.x86_64 202/347 Verifying : openssh-8.4p1-4.fc34.x86_64 203/347 Verifying : openssh-clients-8.4p1-4.fc34.x86_64 204/347 Verifying : orangefs-2.9.8-1.fc34.x86_64 205/347 Verifying : pango-1.48.0-1.fc34.x86_64 206/347 Verifying : pciutils-3.7.0-1.fc34.x86_64 207/347 Verifying : pciutils-libs-3.7.0-1.fc34.x86_64 208/347 Verifying : perl-B-1.80-468.fc34.x86_64 209/347 Verifying : perl-Carp-1.50-457.fc33.noarch 210/347 Verifying : perl-Class-Struct-0.66-468.fc34.noarch 211/347 Verifying : perl-Data-Dumper-2.174-459.fc34.x86_64 212/347 Verifying : perl-DynaLoader-1.47-468.fc34.x86_64 213/347 Verifying : perl-Encode-4:3.08-458.fc34.x86_64 214/347 Verifying : perl-Errno-1.30-468.fc34.x86_64 215/347 Verifying : perl-Exporter-5.74-458.fc33.noarch 216/347 Verifying : perl-Fcntl-1.13-468.fc34.x86_64 217/347 Verifying : perl-File-Basename-2.85-468.fc34.noarch 218/347 Verifying : perl-File-Compare-1.100.600-468.fc34.noarch 219/347 Verifying : perl-File-Copy-2.34-468.fc34.noarch 220/347 Verifying : perl-File-Find-1.37-468.fc34.noarch 221/347 Verifying : perl-File-Path-2.18-1.fc34.noarch 222/347 Verifying : perl-File-Temp-1:0.231.100-1.fc34.noarch 223/347 Verifying : perl-File-stat-1.09-468.fc34.noarch 224/347 Verifying : perl-Getopt-Long-1:2.52-1.fc34.noarch 225/347 Verifying : perl-Getopt-Std-1.12-468.fc34.noarch 226/347 Verifying : perl-HTTP-Tiny-0.076-457.fc33.noarch 227/347 Verifying : perl-IO-1.43-468.fc34.x86_64 228/347 Verifying : perl-IPC-Open3-1.21-468.fc34.noarch 229/347 Verifying : perl-MIME-Base64-3.16-1.fc34.x86_64 230/347 Verifying : perl-POSIX-1.94-468.fc34.x86_64 231/347 Verifying : perl-PathTools-3.78-458.fc34.x86_64 232/347 Verifying : perl-Pod-Escapes-1:1.07-457.fc33.noarch 233/347 Verifying : perl-Pod-Perldoc-3.28.01-458.fc33.noarch 234/347 Verifying : perl-Pod-Simple-1:3.42-1.fc34.noarch 235/347 Verifying : perl-Pod-Usage-4:2.01-1.fc34.noarch 236/347 Verifying : perl-Scalar-List-Utils-4:1.55-457.fc33.x86_64 237/347 Verifying : perl-SelectSaver-1.02-468.fc34.noarch 238/347 Verifying : perl-Socket-4:2.031-1.fc34.x86_64 239/347 Verifying : perl-Storable-1:3.21-457.fc33.x86_64 240/347 Verifying : perl-Symbol-1.08-468.fc34.noarch 241/347 Verifying : perl-Term-ANSIColor-5.01-458.fc33.noarch 242/347 Verifying : perl-Term-Cap-1.17-457.fc33.noarch 243/347 Verifying : perl-Text-ParseWords-3.30-457.fc33.noarch 244/347 Verifying : perl-Text-Tabs+Wrap-2013.0523-457.fc33.noarch 245/347 Verifying : perl-Thread-Queue-3.14-457.fc33.noarch 246/347 Verifying : perl-Time-Local-2:1.300-4.fc33.noarch 247/347 Verifying : perl-constant-1.33-458.fc33.noarch 248/347 Verifying : perl-if-0.60.800-468.fc34.noarch 249/347 Verifying : perl-interpreter-4:5.32.0-468.fc34.x86_64 250/347 Verifying : perl-libs-4:5.32.0-468.fc34.x86_64 251/347 Verifying : perl-mro-1.23-468.fc34.x86_64 252/347 Verifying : perl-overload-1.31-468.fc34.noarch 253/347 Verifying : perl-overloading-0.02-468.fc34.noarch 254/347 Verifying : perl-parent-1:0.238-457.fc33.noarch 255/347 Verifying : perl-podlators-1:4.14-457.fc33.noarch 256/347 Verifying : perl-subs-1.03-468.fc34.noarch 257/347 Verifying : perl-threads-1:2.25-457.fc33.x86_64 258/347 Verifying : perl-threads-shared-1.61-457.fc33.x86_64 259/347 Verifying : perl-vars-1.05-468.fc34.noarch 260/347 Verifying : petsc-mpich-3.14.2-3.fc34.x86_64 261/347 Verifying : petsc-mpich-devel-3.14.2-3.fc34.x86_64 262/347 Verifying : petsc-openmpi-3.14.2-3.fc34.x86_64 263/347 Verifying : petsc-openmpi-devel-3.14.2-3.fc34.x86_64 264/347 Verifying : pixman-0.40.0-2.fc33.x86_64 265/347 Verifying : pmix-3.2.2-1.fc34.x86_64 266/347 Verifying : procps-ng-3.3.16-2.fc34.x86_64 267/347 Verifying : ptscotch-mpich-6.1.0-1.fc34.x86_64 268/347 Verifying : ptscotch-openmpi-6.1.0-1.fc34.x86_64 269/347 Verifying : python-pip-wheel-20.3.3-3.fc34.noarch 270/347 Verifying : python-rpm-macros-3.9-11.fc34.noarch 271/347 Verifying : python-setuptools-wheel-51.1.2-1.fc34.noarch 272/347 Verifying : python3-3.9.1-1.fc34.x86_64 273/347 Verifying : python3-Cython-0.29.21-4.fc34.x86_64 274/347 Verifying : python3-babel-2.9.0-3.fc34.noarch 275/347 Verifying : python3-chardet-3.0.4-18.fc33.noarch 276/347 Verifying : python3-devel-3.9.1-1.fc34.x86_64 277/347 Verifying : python3-docutils-0.16-3.fc33.noarch 278/347 Verifying : python3-idna-2.10-2.fc33.noarch 279/347 Verifying : python3-imagesize-1.2.0-2.fc33.noarch 280/347 Verifying : python3-jinja2-2.11.2-7.fc34.noarch 281/347 Verifying : python3-libs-3.9.1-1.fc34.x86_64 282/347 Verifying : python3-markupsafe-1.1.1-9.fc34.x86_64 283/347 Verifying : python3-packaging-20.8-1.fc34.noarch 284/347 Verifying : python3-pygments-2.7.2-1.fc34.noarch 285/347 Verifying : python3-pyparsing-2.4.7-4.fc33.noarch 286/347 Verifying : python3-pysocks-1.7.1-7.fc33.noarch 287/347 Verifying : python3-pytz-2020.5-1.fc34.noarch 288/347 Verifying : python3-requests-2.25.0-1.fc34.noarch 289/347 Verifying : python3-rpm-generators-11-12.fc34.noarch 290/347 Verifying : python3-rpm-macros-3.9-11.fc34.noarch 291/347 Verifying : python3-setuptools-51.1.2-1.fc34.noarch 292/347 Verifying : python3-six-1.15.0-3.fc34.noarch 293/347 Verifying : python3-snowballstemmer-1.9.0-7.fc33.noarch 294/347 Verifying : python3-sphinx-1:3.3.1-2.fc34.noarch 295/347 Verifying : python3-sphinx-theme-alabaster-0.7.12-10.fc33.no 296/347 Verifying : python3-sphinxcontrib-applehelp-1.0.2-2.fc33.noa 297/347 Verifying : python3-sphinxcontrib-devhelp-1.0.2-2.fc33.noarc 298/347 Verifying : python3-sphinxcontrib-htmlhelp-1.0.3-2.fc33.noar 299/347 Verifying : python3-sphinxcontrib-jsmath-1.0.1-9.fc33.noarch 300/347 Verifying : python3-sphinxcontrib-qthelp-1.0.3-2.fc33.noarch 301/347 Verifying : python3-sphinxcontrib-serializinghtml-1.1.4-2.fc 302/347 Verifying : python3-urllib3-1.25.10-3.fc34.noarch 303/347 Verifying : rpm-mpi-hooks-6-6.fc33.noarch 304/347 Verifying : scalapack-common-2.1.0-7.fc34.x86_64 305/347 Verifying : scalapack-mpich-2.1.0-7.fc34.x86_64 306/347 Verifying : scalapack-openmpi-2.1.0-7.fc34.x86_64 307/347 Verifying : scotch-6.1.0-1.fc34.x86_64 308/347 Verifying : shared-mime-info-2.1-1.fc34.x86_64 309/347 Verifying : suitesparse-5.4.0-5.fc34.x86_64 310/347 Verifying : suitesparse64-5.4.0-5.fc34.x86_64 311/347 Verifying : sundials-5.5.0-2.fc34.x86_64 312/347 Verifying : sundials-devel-5.5.0-2.fc34.x86_64 313/347 Verifying : sundials-mpich-5.5.0-2.fc34.x86_64 314/347 Verifying : sundials-mpich-devel-5.5.0-2.fc34.x86_64 315/347 Verifying : sundials-openmpi-5.5.0-2.fc34.x86_64 316/347 Verifying : sundials-openmpi-devel-5.5.0-2.fc34.x86_64 317/347 Verifying : superlu_dist-mpich-1:6.1.1-6.fc34.x86_64 318/347 Verifying : superlu_dist-openmpi-1:6.1.1-6.fc34.x86_64 319/347 Verifying : systemd-247.2-1.fc34.x86_64 320/347 Verifying : systemd-pam-247.2-1.fc34.x86_64 321/347 Verifying : systemd-rpm-macros-247.2-1.fc34.noarch 322/347 Verifying : systemd-udev-247.2-1.fc34.x86_64 323/347 Verifying : tbb-2020.3-2.fc33.x86_64 324/347 Verifying : tcl-1:8.6.10-5.fc34.x86_64 325/347 Verifying : tcsh-6.22.03-1.fc34.x86_64 326/347 Verifying : tk-1:8.6.10-5.fc33.x86_64 327/347 Verifying : ucx-1.9.0-1.fc34.x86_64 328/347 Verifying : urw-base35-bookman-fonts-20200910-1.fc34.noarch 329/347 Verifying : urw-base35-c059-fonts-20200910-1.fc34.noarch 330/347 Verifying : urw-base35-d050000l-fonts-20200910-1.fc34.noarch 331/347 Verifying : urw-base35-fonts-20200910-1.fc34.noarch 332/347 Verifying : urw-base35-fonts-common-20200910-1.fc34.noarch 333/347 Verifying : urw-base35-gothic-fonts-20200910-1.fc34.noarch 334/347 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-1.fc34. 335/347 Verifying : urw-base35-nimbus-roman-fonts-20200910-1.fc34.no 336/347 Verifying : urw-base35-nimbus-sans-fonts-20200910-1.fc34.noa 337/347 Verifying : urw-base35-p052-fonts-20200910-1.fc34.noarch 338/347 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-1. 339/347 Verifying : urw-base35-z003-fonts-20200910-1.fc34.noarch 340/347 Verifying : vim-filesystem-2:8.2.2311-1.fc34.noarch 341/347 Verifying : xapian-core-libs-1.4.17-2.fc34.x86_64 342/347 Verifying : xml-common-0.6.3-55.fc33.noarch 343/347 Verifying : xorg-x11-font-utils-1:7.5-47.fc34.x86_64 344/347 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-26.fc34.noar 345/347 Verifying : xorg-x11-server-utils-7.7-37.fc34.x86_64 346/347 Verifying : zlib-devel-1.2.11-23.fc34.x86_64 347/347 Installed: MUMPS-common-5.3.5-1.fc34.noarch MUMPS-mpich-5.3.5-1.fc34.x86_64 MUMPS-openmpi-5.3.5-1.fc34.x86_64 acl-2.2.53-9.fc34.x86_64 adobe-mappings-cmap-20171205-9.fc33.noarch adobe-mappings-cmap-deprecated-20171205-9.fc33.noarch adobe-mappings-pdf-20180407-7.fc33.noarch annobin-9.57-1.fc34.x86_64 atk-2.36.0-2.fc33.x86_64 autoconf-2.69-35.fc34.noarch autoconf-archive-2019.01.06-6.fc33.noarch automake-1.16.2-3.fc34.noarch avahi-libs-0.8-6.fc34.x86_64 cairo-1.17.4-1.fc34.x86_64 cairo-gobject-1.17.4-1.fc34.x86_64 cgnslib-4.1.2-1.fc34.x86_64 clang-libs-11.0.1-4.fc34.x86_64 clang-resource-filesystem-11.0.1-4.fc34.x86_64 cmake-filesystem-3.19.3-1.fc34.x86_64 cpp-11.0.0-0.13.fc34.x86_64 cryptsetup-libs-2.3.4-1.fc34.x86_64 cups-libs-1:2.3.3op1-1.fc34.x86_64 dbus-1:1.12.20-2.fc33.x86_64 dbus-broker-24-2.fc34.x86_64 dbus-common-1:1.12.20-2.fc33.noarch dbus-libs-1:1.12.20-2.fc33.x86_64 dejavu-sans-fonts-2.37-15.fc34.noarch device-mapper-1.02.173-1.fc33.x86_64 device-mapper-libs-1.02.173-1.fc33.x86_64 doxygen-1:1.9.1-1.fc34.x86_64 emacs-filesystem-1:27.1-2.fc34.noarch environment-modules-4.6.1-1.fc34.x86_64 fftw-3.3.8-9.fc34.x86_64 fftw-devel-3.3.8-9.fc34.x86_64 fftw-libs-3.3.8-9.fc34.x86_64 fftw-libs-double-3.3.8-9.fc34.x86_64 fftw-libs-long-3.3.8-9.fc34.x86_64 fftw-libs-quad-3.3.8-9.fc34.x86_64 fftw-libs-single-3.3.8-9.fc34.x86_64 flexiblas-3.0.4-2.fc34.x86_64 flexiblas-devel-3.0.4-2.fc34.x86_64 flexiblas-netlib-3.0.4-2.fc34.x86_64 flexiblas-netlib64-3.0.4-2.fc34.x86_64 flexiblas-openblas-openmp-3.0.4-2.fc34.x86_64 flexiblas-openblas-openmp64-3.0.4-2.fc34.x86_64 fontconfig-2.13.93-4.fc34.x86_64 fonts-filesystem-1:2.0.5-4.fc33.noarch freetype-2.10.4-1.fc34.x86_64 fribidi-1.0.10-3.fc33.x86_64 gcc-11.0.0-0.13.fc34.x86_64 gcc-c++-11.0.0-0.13.fc34.x86_64 gcc-gfortran-11.0.0-0.13.fc34.x86_64 gd-2.3.0-3.fc33.x86_64 gdbm-libs-1:1.19-1.fc34.x86_64 gdk-pixbuf2-2.40.0-3.fc33.x86_64 gdk-pixbuf2-modules-2.40.0-3.fc33.x86_64 gettext-0.21-3.fc34.x86_64 gettext-common-devel-0.21-3.fc34.noarch gettext-devel-0.21-3.fc34.x86_64 gettext-libs-0.21-3.fc34.x86_64 glib2-2.67.1-2.fc34.x86_64 glibc-devel-2.32.9000-26.fc34.x86_64 glibc-headers-x86-2.32.9000-26.fc34.noarch gnutls-3.6.15-2.fc34.x86_64 google-droid-sans-fonts-20200215-8.fc34.noarch graphite2-1.3.14-6.fc34.x86_64 graphviz-2.44.0-16.fc34.x86_64 groff-base-1.22.4-4.fc34.x86_64 gtk-update-icon-cache-3.24.24-1.fc34.x86_64 gtk2-2.24.33-2.fc34.x86_64 gts-0.7.6-38.20121130.fc33.x86_64 harfbuzz-2.7.4-1.fc34.x86_64 hdf-libs-4.2.15-3.fc33.x86_64 hdf5-1.10.6-4.fc34.x86_64 hdf5-devel-1.10.6-4.fc34.x86_64 hdf5-mpich-1.10.6-4.fc34.x86_64 hdf5-mpich-devel-1.10.6-4.fc34.x86_64 hdf5-openmpi-1.10.6-4.fc34.x86_64 hdf5-openmpi-devel-1.10.6-4.fc34.x86_64 hicolor-icon-theme-0.17-9.fc33.noarch hwdata-0.343-1.fc34.noarch hwloc-libs-2.2.0-1.fc33.x86_64 hypre-mpich-2.18.2-2.fc34.x86_64 hypre-openmpi-2.18.2-2.fc34.x86_64 infinipath-psm-3.3-26_g604758e_open.6.fc34.2.x86_64 iptables-libs-1.8.7-1.fc34.x86_64 isl-0.16.1-12.fc33.x86_64 jasper-libs-2.0.22-1.fc34.x86_64 jbig2dec-libs-0.19-3.fc34.x86_64 jbigkit-libs-2.1-20.fc34.x86_64 json-c-0.14-7.fc33.x86_64 kbd-2.4.0-1.fc34.x86_64 kbd-misc-2.4.0-1.fc34.noarch kernel-headers-5.11.0-0.rc2.git0.1.fc34.x86_64 kmod-28-1.fc34.x86_64 kmod-libs-28-1.fc34.x86_64 langpacks-core-font-en-3.0-6.fc34.noarch lasi-1.1.3-4.fc33.x86_64 lcms2-2.11-2.fc33.x86_64 less-551-4.fc33.x86_64 libICE-1.0.10-5.fc34.x86_64 libSM-1.2.3-7.fc34.x86_64 libX11-1.7.0-2.fc34.x86_64 libX11-common-1.7.0-2.fc34.noarch libX11-xcb-1.7.0-2.fc34.x86_64 libXau-1.0.9-5.fc34.x86_64 libXaw-1.0.13-16.fc34.x86_64 libXcomposite-0.4.5-4.fc34.x86_64 libXcursor-1.2.0-4.fc34.x86_64 libXdamage-1.1.5-4.fc34.x86_64 libXext-1.3.4-5.fc34.x86_64 libXfixes-5.0.3-13.fc34.x86_64 libXft-2.3.3-5.fc34.x86_64 libXi-1.7.10-5.fc34.x86_64 libXinerama-1.1.4-7.fc34.x86_64 libXmu-1.1.3-5.fc34.x86_64 libXpm-3.5.13-4.fc34.x86_64 libXrandr-1.5.2-5.fc34.x86_64 libXrender-0.9.10-13.fc34.x86_64 libXt-1.2.0-3.fc34.x86_64 libXxf86vm-1.1.4-15.fc34.x86_64 libaec-1.0.4-6.fc34.x86_64 libaec-devel-1.0.4-6.fc34.x86_64 libargon2-20171227-5.fc33.x86_64 libcbor-0.7.0-2.fc34.x86_64 libcurl-devel-7.74.0-2.fc34.x86_64 libdatrie-0.2.9-13.fc34.x86_64 libdrm-2.4.103-1.fc34.x86_64 libedit-3.1-33.20191231cvs.fc33.x86_64 libevent-2.1.12-2.fc34.x86_64 libfabric-1.11.2-1.fc34.x86_64 libfido2-1.6.0-1.fc34.x86_64 libfontenc-1.1.3-14.fc34.x86_64 libgfortran-11.0.0-0.13.fc34.x86_64 libglvnd-1:1.3.2-2.fc33.x86_64 libglvnd-glx-1:1.3.2-2.fc33.x86_64 libgs-9.53.3-4.fc34.x86_64 libibumad-32.0-1.fc34.x86_64 libibverbs-32.0-1.fc34.x86_64 libibverbs-core-32.0-1.fc34.x86_64 libijs-0.35-12.fc33.x86_64 libimagequant-2.13.1-1.fc34.x86_64 libjpeg-turbo-2.0.5-5.fc33.x86_64 libmcpp-2.7.2-26.fc33.x86_64 libmnl-1.0.4-12.fc33.x86_64 libmpc-1.2.1-1.fc34.x86_64 libnetfilter_conntrack-1.0.7-5.fc33.x86_64 libnfnetlink-1.0.1-18.fc33.x86_64 libnl3-3.5.0-5.fc33.x86_64 libpaper-1.1.28-1.fc34.x86_64 libpcap-14:1.9.1-6.fc34.x86_64 libpciaccess-0.16-3.fc33.x86_64 libpipeline-1.5.3-1.fc34.x86_64 libpng-2:1.6.37-6.fc34.x86_64 libpsm2-11.2.86-7.fc34.x86_64 libquadmath-11.0.0-0.13.fc34.x86_64 libquadmath-devel-11.0.0-0.13.fc34.x86_64 libraqm-0.7.0-6.fc33.x86_64 librdmacm-32.0-1.fc34.x86_64 librsvg2-2.50.2-1.fc34.x86_64 libseccomp-2.5.0-3.fc33.x86_64 libstdc++-devel-11.0.0-0.13.fc34.x86_64 libtextstyle-0.21-3.fc34.x86_64 libthai-0.1.28-5.fc33.x86_64 libtiff-4.1.0-6.fc34.x86_64 libwebp-1.1.0-5.fc33.x86_64 libxcb-1.13.1-6.fc34.x86_64 libxcrypt-devel-4.4.17-1.fc34.x86_64 libxshmfence-1.3-7.fc33.x86_64 llvm-libs-11.0.1-4.fc34.x86_64 m4-1.4.18-16.fc34.x86_64 man-db-2.9.3-2.fc34.x86_64 mcpp-2.7.2-26.fc33.x86_64 mesa-libGL-20.3.3-3.fc34.x86_64 mesa-libGLU-9.0.1-3.fc33.x86_64 mesa-libglapi-20.3.3-3.fc34.x86_64 metis-5.1.0-27.fc34.x86_64 mpark-variant-devel-1.4.0-4.fc33.x86_64 mpich-3.3.2-8.fc34.x86_64 mpich-devel-3.3.2-8.fc34.x86_64 munge-libs-0.5.13-10.fc34.x86_64 ncurses-6.2-3.20200222.fc33.x86_64 netcdf-4.7.3-5.fc34.x86_64 netcdf-cxx4-4.3.1-3.fc33.x86_64 netcdf-cxx4-devel-4.3.1-3.fc33.x86_64 netcdf-devel-4.7.3-5.fc34.x86_64 netpbm-10.92.00-1.fc34.x86_64 nettle-3.7-1.fc34.x86_64 numactl-libs-2.0.14-2.fc34.x86_64 openblas-0.3.12-1.fc34.x86_64 openblas-openmp-0.3.12-1.fc34.x86_64 openblas-openmp64-0.3.12-1.fc34.x86_64 openjpeg2-2.4.0-1.fc34.x86_64 openmpi-4.0.5-2.fc34.x86_64 openmpi-devel-4.0.5-2.fc34.x86_64 opensm-libs-3.3.23-5.fc34.x86_64 openssh-8.4p1-4.fc34.x86_64 openssh-clients-8.4p1-4.fc34.x86_64 orangefs-2.9.8-1.fc34.x86_64 pango-1.48.0-1.fc34.x86_64 pciutils-3.7.0-1.fc34.x86_64 pciutils-libs-3.7.0-1.fc34.x86_64 perl-B-1.80-468.fc34.x86_64 perl-Carp-1.50-457.fc33.noarch perl-Class-Struct-0.66-468.fc34.noarch perl-Data-Dumper-2.174-459.fc34.x86_64 perl-DynaLoader-1.47-468.fc34.x86_64 perl-Encode-4:3.08-458.fc34.x86_64 perl-Errno-1.30-468.fc34.x86_64 perl-Exporter-5.74-458.fc33.noarch perl-Fcntl-1.13-468.fc34.x86_64 perl-File-Basename-2.85-468.fc34.noarch perl-File-Compare-1.100.600-468.fc34.noarch perl-File-Copy-2.34-468.fc34.noarch perl-File-Find-1.37-468.fc34.noarch perl-File-Path-2.18-1.fc34.noarch perl-File-Temp-1:0.231.100-1.fc34.noarch perl-File-stat-1.09-468.fc34.noarch perl-Getopt-Long-1:2.52-1.fc34.noarch perl-Getopt-Std-1.12-468.fc34.noarch perl-HTTP-Tiny-0.076-457.fc33.noarch perl-IO-1.43-468.fc34.x86_64 perl-IPC-Open3-1.21-468.fc34.noarch perl-MIME-Base64-3.16-1.fc34.x86_64 perl-POSIX-1.94-468.fc34.x86_64 perl-PathTools-3.78-458.fc34.x86_64 perl-Pod-Escapes-1:1.07-457.fc33.noarch perl-Pod-Perldoc-3.28.01-458.fc33.noarch perl-Pod-Simple-1:3.42-1.fc34.noarch perl-Pod-Usage-4:2.01-1.fc34.noarch perl-Scalar-List-Utils-4:1.55-457.fc33.x86_64 perl-SelectSaver-1.02-468.fc34.noarch perl-Socket-4:2.031-1.fc34.x86_64 perl-Storable-1:3.21-457.fc33.x86_64 perl-Symbol-1.08-468.fc34.noarch perl-Term-ANSIColor-5.01-458.fc33.noarch perl-Term-Cap-1.17-457.fc33.noarch perl-Text-ParseWords-3.30-457.fc33.noarch perl-Text-Tabs+Wrap-2013.0523-457.fc33.noarch perl-Thread-Queue-3.14-457.fc33.noarch perl-Time-Local-2:1.300-4.fc33.noarch perl-constant-1.33-458.fc33.noarch perl-if-0.60.800-468.fc34.noarch perl-interpreter-4:5.32.0-468.fc34.x86_64 perl-libs-4:5.32.0-468.fc34.x86_64 perl-mro-1.23-468.fc34.x86_64 perl-overload-1.31-468.fc34.noarch perl-overloading-0.02-468.fc34.noarch perl-parent-1:0.238-457.fc33.noarch perl-podlators-1:4.14-457.fc33.noarch perl-subs-1.03-468.fc34.noarch perl-threads-1:2.25-457.fc33.x86_64 perl-threads-shared-1.61-457.fc33.x86_64 perl-vars-1.05-468.fc34.noarch petsc-mpich-3.14.2-3.fc34.x86_64 petsc-mpich-devel-3.14.2-3.fc34.x86_64 petsc-openmpi-3.14.2-3.fc34.x86_64 petsc-openmpi-devel-3.14.2-3.fc34.x86_64 pixman-0.40.0-2.fc33.x86_64 pmix-3.2.2-1.fc34.x86_64 procps-ng-3.3.16-2.fc34.x86_64 ptscotch-mpich-6.1.0-1.fc34.x86_64 ptscotch-openmpi-6.1.0-1.fc34.x86_64 python-pip-wheel-20.3.3-3.fc34.noarch python-rpm-macros-3.9-11.fc34.noarch python-setuptools-wheel-51.1.2-1.fc34.noarch python3-3.9.1-1.fc34.x86_64 python3-Cython-0.29.21-4.fc34.x86_64 python3-babel-2.9.0-3.fc34.noarch python3-cftime-1.3.0-1.fc34.x86_64 python3-chardet-3.0.4-18.fc33.noarch python3-devel-3.9.1-1.fc34.x86_64 python3-docutils-0.16-3.fc33.noarch python3-idna-2.10-2.fc33.noarch python3-imagesize-1.2.0-2.fc33.noarch python3-jinja2-2.11.2-7.fc34.noarch python3-libs-3.9.1-1.fc34.x86_64 python3-markupsafe-1.1.1-9.fc34.x86_64 python3-netcdf4-1.5.4-1.fc34.x86_64 python3-numpy-1:1.20.0-1.rc2.fc34.x86_64 python3-numpy-f2py-1:1.20.0-1.rc2.fc34.x86_64 python3-packaging-20.8-1.fc34.noarch python3-pygments-2.7.2-1.fc34.noarch python3-pyparsing-2.4.7-4.fc33.noarch python3-pysocks-1.7.1-7.fc33.noarch python3-pytz-2020.5-1.fc34.noarch python3-requests-2.25.0-1.fc34.noarch python3-rpm-generators-11-12.fc34.noarch python3-rpm-macros-3.9-11.fc34.noarch python3-scipy-1.6.0-1.fc34.x86_64 python3-setuptools-51.1.2-1.fc34.noarch python3-six-1.15.0-3.fc34.noarch python3-snowballstemmer-1.9.0-7.fc33.noarch python3-sphinx-1:3.3.1-2.fc34.noarch python3-sphinx-theme-alabaster-0.7.12-10.fc33.noarch python3-sphinxcontrib-applehelp-1.0.2-2.fc33.noarch python3-sphinxcontrib-devhelp-1.0.2-2.fc33.noarch python3-sphinxcontrib-htmlhelp-1.0.3-2.fc33.noarch python3-sphinxcontrib-jsmath-1.0.1-9.fc33.noarch python3-sphinxcontrib-qthelp-1.0.3-2.fc33.noarch python3-sphinxcontrib-serializinghtml-1.1.4-2.fc33.noarch python3-urllib3-1.25.10-3.fc34.noarch rdma-core-32.0-1.fc34.x86_64 rpm-mpi-hooks-6-6.fc33.noarch scalapack-common-2.1.0-7.fc34.x86_64 scalapack-mpich-2.1.0-7.fc34.x86_64 scalapack-openmpi-2.1.0-7.fc34.x86_64 scotch-6.1.0-1.fc34.x86_64 shared-mime-info-2.1-1.fc34.x86_64 suitesparse-5.4.0-5.fc34.x86_64 suitesparse64-5.4.0-5.fc34.x86_64 sundials-5.5.0-2.fc34.x86_64 sundials-devel-5.5.0-2.fc34.x86_64 sundials-mpich-5.5.0-2.fc34.x86_64 sundials-mpich-devel-5.5.0-2.fc34.x86_64 sundials-openmpi-5.5.0-2.fc34.x86_64 sundials-openmpi-devel-5.5.0-2.fc34.x86_64 superlu_dist-mpich-1:6.1.1-6.fc34.x86_64 superlu_dist-openmpi-1:6.1.1-6.fc34.x86_64 systemd-247.2-1.fc34.x86_64 systemd-pam-247.2-1.fc34.x86_64 systemd-rpm-macros-247.2-1.fc34.noarch systemd-udev-247.2-1.fc34.x86_64 tbb-2020.3-2.fc33.x86_64 tcl-1:8.6.10-5.fc34.x86_64 tcsh-6.22.03-1.fc34.x86_64 tk-1:8.6.10-5.fc33.x86_64 ucx-1.9.0-1.fc34.x86_64 urw-base35-bookman-fonts-20200910-1.fc34.noarch urw-base35-c059-fonts-20200910-1.fc34.noarch urw-base35-d050000l-fonts-20200910-1.fc34.noarch urw-base35-fonts-20200910-1.fc34.noarch urw-base35-fonts-common-20200910-1.fc34.noarch urw-base35-gothic-fonts-20200910-1.fc34.noarch urw-base35-nimbus-mono-ps-fonts-20200910-1.fc34.noarch urw-base35-nimbus-roman-fonts-20200910-1.fc34.noarch urw-base35-nimbus-sans-fonts-20200910-1.fc34.noarch urw-base35-p052-fonts-20200910-1.fc34.noarch urw-base35-standard-symbols-ps-fonts-20200910-1.fc34.noarch urw-base35-z003-fonts-20200910-1.fc34.noarch vim-filesystem-2:8.2.2311-1.fc34.noarch xapian-core-libs-1.4.17-2.fc34.x86_64 xml-common-0.6.3-55.fc33.noarch xorg-x11-font-utils-1:7.5-47.fc34.x86_64 xorg-x11-fonts-ISO8859-1-100dpi-7.5-26.fc34.noarch xorg-x11-server-utils-7.7-37.fc34.x86_64 zlib-devel-1.2.11-23.fc34.x86_64 Complete! Finish: build setup for bout++-4.3.2-4.fc34.src.rpm Start: rpmbuild bout++-4.3.2-4.fc34.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1610841600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kZIKss + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf BOUT++-v4.3.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/BOUT++-v4.3.2.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd BOUT++-v4.3.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf externalpackages/mpark.variant/ + mkdir -p externalpackages/mpark.variant/include/ ++ find -L tools/pylib/ -type f ++ grep -v _boutcore_build + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_zoidberg.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/test_field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/rzline.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/progress.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/poloidal_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/plot.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/fieldtracer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/field.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/boundary.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/zoidberg/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/rms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/crosslines.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/geqdsk.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/local_min_max.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/watch.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/volume_integral.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/surface_average.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/spectrogram.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/showdata.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/run_wrapper.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/read_geqdsk.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/radial_grid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/plotpolslice.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/plotdata.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/options.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/moment_xyzt.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/mode_structure.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/linear_regression.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/int_func.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/idl_tabulate.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/file_import.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/fft_integrate.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/fft_deriv.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/efit_analyzer.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/datafile.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/contour.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/closest_line.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/check_scaling.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/calculus.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/boutwarnings.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/boutgrid.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/boutarray.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/ask.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/anim.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/analyse_equil_2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boututils/View3D.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/squashoutput.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/shiftz.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/settings.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/restart.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/processor_rearrange.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/pol_slice.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/mms.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/mayavi2.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/input.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/griddata.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/gen_surface.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/data.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/collect.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/cbdtoeqdsk.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/boutdata/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/bout_runners/bout_runners.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/bout_runners/__init__.py + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/bout_runners/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/README.md + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/Makefile + for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build ) + sed -i '/^#!\//d' tools/pylib/.gitignore + autoreconf autoreconf: configure.ac: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.meTzmW + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + for mpi in mpich openmpi + mkdir build_mpich + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_mpich + for mpi in mpich openmpi + mkdir build_openmpi + cp -al CHANGELOG.md CITATION.bib CITATION.cff CMakeLists.txt CONTRIBUTING.md LICENSE LICENSE.GPL README.md aclocal.m4 aminclude_static.am autom4te.cache change_summary.md cmake configure configure.ac examples externalpackages include locale m4 make.config.in makefile makefile.submodules manual output.make requirements.txt src tests tools build-aux bin build_openmpi + for mpi in mpich openmpi + pushd build_mpich ~/build/BUILD/BOUT++-v4.3.2/build_mpich ~/build/BUILD/BOUT++-v4.3.2 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64::;' export 'MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH; MODULES_LMCONFLICT_modshare=mpi/mpich-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME; LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG; MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH; _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/mpich-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/mpich-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/mpich-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export 'CFLAGS= -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2021-01-17 14:29:36.015190724 +0000 +++ ./configure 2021-01-17 14:29:36.243185144 +0000 @@ -1953,7 +1953,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/mpich/lib --bindir=/usr/lib64/mpich/bin --sbindir=/usr/lib64/mpich/sbin --includedir=/usr/include/mpich-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mpic++ accepts -g... yes checking for function MPI_Init... yes checking for mpi.h... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking how to run the C++ preprocessor... mpic++ -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for library containing dladdr... -ldl configure: Native backtrace enabled ./configure: line 6363: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking how to run the C preprocessor... mpicc -E checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.10.6) checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSC... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway checking if we can compile with SUNDIALS IDA... yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no checking if we can compile with SUNDIALS CVODE... configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway checking if we can compile with SUNDIALS ARKODE... yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... /bin/sh: build-aux/config.rpath: No such file or directory done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.3.2\"" -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LIBS = -ldl -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/mpich/lib -lpetsc -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.3.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASED # If this is part of an packaged and installed installation, the user cannot # write these files, so they shouldn't be changed. Thus only set this, in # the non installed case. LIB = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. This allows to e.g. specify a directory # as fuu/bar/ and still get an archive named bar.a @$(MAKE) -s --no-print-directory MODULE_DIR=$(MODULE_DIR) SUB_NAME=$(shell basename $@) TARGET=sub -C $@ endif endif # Create 'lib' and 'include' incase they don't exist $(BOUT_TOP)/include $(BOUT_TOP)/lib: $(MKDIR) $@ #################################################################### # Install header files and libraries #################################################################### INSTALL = /usr/bin/install -c INSTALL_PROGRAM = ${INSTALL} INSTALL_DATA = ${INSTALL} -m 644 INSTALL_INCLUDE_PATH = $(DESTDIR)/usr/include/mpich-x86_64/bout++/ # A list of relative paths e.g. "fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo" MO_FILES = $(shell cd locale; ls */LC_MESSAGES/libbout.mo) install: libfast $(PRE_INSTALL) # Pre-install commands follow. $(NORMAL_INSTALL) # Normal commands follow. $(MKDIR) $(INSTALL_INCLUDE_PATH)/{,pvode,bout/sys,bout/invert} $(MKDIR) $(DESTDIR)/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} $(MKDIR) $(DESTDIR)//usr/share/bout++/pylib/{boutdata,boututils} $(INSTALL_DATA) include/*.hxx $(INSTALL_INCLUDE_PATH) ifeq ("", "yes") $(MKDIR) $(INSTALL_INCLUDE_PATH)/mpark $(INSTALL_DATA) $(MPARK_VARIANT_INCLUDE_PATH)/mpark/*.hpp $(INSTALL_INCLUDE_PATH)/mpark endif $(INSTALL_DATA) include/pvode/*.h $(INSTALL_INCLUDE_PATH)/pvode/ $(INSTALL_DATA) include/bout/*.hxx $(INSTALL_INCLUDE_PATH)/bout/ $(INSTALL_DATA) include/bout/sys/*.hxx $(INSTALL_INCLUDE_PATH)/bout/sys/ $(INSTALL_DATA) include/bout/invert/*.hxx $(INSTALL_INCLUDE_PATH)/bout/invert/ $(INSTALL_DATA) lib/libbout++.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvode.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_DATA) lib/libpvpre.a $(DESTDIR)/usr/lib64/mpich/lib $(INSTALL_PROGRAM) bin/bout-config $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_PROGRAM) bin/bout-log-color $(DESTDIR)/usr/lib64/mpich/bin $(INSTALL_DATA) tools/idllib/*.pro $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/idllib/README $(DESTDIR)/usr/share/bout++/idllib/ $(INSTALL_DATA) tools/pylib/boutdata/*.py $(DESTDIR)/usr/share/bout++/pylib/boutdata/ $(INSTALL_DATA) tools/pylib/boututils/*.py $(DESTDIR)/usr/share/bout++/pylib/boututils/ $(INSTALL_DATA) make.config $(INSTALL_INCLUDE_PATH) for mo in $(MO_FILES); do $(MKDIR) $(DESTDIR)${datarootdir}/locale/`dirname $$mo`; $(INSTALL_DATA) locale/$$mo $(DESTDIR)${datarootdir}/locale/$$mo; done $(POST_INSTALL) # Post-install commands follow. @# Modify paths in the bout-config script sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(DESTDIR)/usr/lib64/mpich/bin/bout-config endif @# Modify paths in the make.config file sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" $(INSTALL_INCLUDE_PATH)/make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" $(INSTALL_INCLUDE_PATH)/make.config ifeq ("", "yes") sed -i "s|^MPARK_VARIANT_INCLUDE_PATH=.*|MPARK_VARIANT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" $(INSTALL_INCLUDE_PATH)/make.config endif # Set the make.config as released, so the library isn't rebuild. This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) -r $(DESTDIR)/usr/share/bout++/pylib/boututils/ $(RM) -r $(DESTDIR)/usr/share/bout++/pylib/boutdata/ $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/mpich/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/mpich/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/mpich-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub:$(LIB) $(LIB): makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @LIBT=$(LIB).$$$$.a && \ $(AR) $(ARFLAGS) $${LIBT} $(OBJ) && \ $(RANLIB) $${LIBT} && \ mv $${LIBT} $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for d in $(DIRS_) ; do basename $$d;done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): | $(DIRS) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) $(LDFLAGS) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS); do echo " " $$pp cleaned; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared python Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from field.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from field.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field2d.cxx In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from ncxx4.hxx:51, from ncxx4.cxx:23: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field3d.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field3d.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fieldperp.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fieldperp.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_data.cxx Compiling dataformat.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling formatfactory.cxx Compiling fieldgroup.cxx In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4, from fieldgroup.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4, from fieldgroup.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling cyclic.cxx Compiling field_factory.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parderiv_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldgenerators.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10, from fieldgenerators.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10, from fieldgenerators.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling initialprofiles.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx Compiling pdd.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/lapack_routines.hxx:26, from pdd.cxx:36: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/lapack_routines.hxx:26, from pdd.cxx:36: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling spt.cxx Compiling vector2d.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/msg_stack.hxx:35, from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../../include/msg_stack.hxx:35, from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx Compiling petsc_laplace.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63, from petsc_laplace.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63, from petsc_laplace.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mumps_laplace.cxx Compiling globalfield.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling generated_fieldops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shoot_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_laplace.cxx invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ^~~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx:100:30: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_laplace.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_laplace.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacefactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_alg.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_alg.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_alg.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx Compiling naulin_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_solver.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from multigrid_laplace.hxx:36, from multigrid_solver.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutmesh.cxx In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/msg_stack.hxx:35, from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/msg_stack.hxx:35, from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexy.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:64, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:218, from /usr/include/mpich-x86_64/petsc/petscsys.h:40, from /usr/include/mpich-x86_64/petsc/petscis.h:7, from /usr/include/mpich-x86_64/petsc/petscvec.h:9, from /usr/include/mpich-x86_64/petsc/petscmat.h:6, from /usr/include/mpich-x86_64/petsc/petscpc.h:6, from /usr/include/mpich-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:64, from laplacexy.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:218, from /usr/include/mpich-x86_64/petsc/petscsys.h:40, from /usr/include/mpich-x86_64/petsc/petscis.h:7, from /usr/include/mpich-x86_64/petsc/petscvec.h:9, from /usr/include/mpich-x86_64/petsc/petscmat.h:6, from /usr/include/mpich-x86_64/petsc/petscpc.h:6, from /usr/include/mpich-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx Compiling shiftedmetric.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci.cxx Compiling laplacexz-petsc.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling identity.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromoptions.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromfile.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lapack_routines.cxx In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling physicsmodel.cxx Compiling bilinear.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/bout.hxx:40, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/bout.hxx:40, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling smoothing.cxx Compiling hermite_spline.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sourcex.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling monotonic_hermite_spline.cxx Compiling gyro_average.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:37: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ^ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:37: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:34: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:53: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:66: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:53: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:66: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:37: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ^ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../include/msg_stack.hxx:35, from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling arkode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from arkode.hxx:35, from arkode.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from arkode.hxx:35, from arkode.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from pvode.hxx:34, from pvode.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from pvode.hxx:34, from pvode.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from cvode.hxx:34, from cvode.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from cvode.hxx:34, from cvode.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh.cxx Compiling ida.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from ida.hxx:35, from ida.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from ida.hxx:35, from ida.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:218, from /usr/include/mpich-x86_64/petsc/petscsys.h:40, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/mpich-x86_64/petsc/petscsystypes.h:218, from /usr/include/mpich-x86_64/petsc/petscsys.h:40, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:859:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 859 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/mpich-x86_64/petsc/petscsys.h:1362, from /usr/include/mpich-x86_64/petsc/petscbag.h:4, from /usr/include/mpich-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/mpich-x86_64/petsc/petscerror.h:464:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 464 | #define CHKERRQ(ierr) do {PetscErrorCode ierr__ = (ierr); if (PetscUnlikely(ierr__)) return PetscError(PETSC_COMM_SELF,__LINE__,PETSC_FUNCTION_NAME,__FILE__,ierr__,PETSC_ERROR_REPEAT," ");} while (0) | ^~ petsc.cxx:859:79: note: in expansion of macro 'CHKERRQ' 859 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ Compiling boundary_standard.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling snes.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from snes.hxx:38, from snes.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from snes.hxx:38, from snes.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling power.cxx Compiling boundary_region.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from power.hxx:33, from power.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from power.hxx:33, from power.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling meshfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from karniadakis.hxx:41, from karniadakis.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from karniadakis.hxx:41, from karniadakis.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling surfaceiter.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx Compiling coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rk4.hxx:36, from rk4.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rk4.hxx:36, from rk4.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from euler.hxx:36, from euler.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from euler.hxx:36, from euler.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../../include/bout/index_derivs.hxx:33, from index_derivs.cxx:24: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../../include/bout/index_derivs.hxx:33, from index_derivs.cxx:24: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4simple.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf34.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkgeneric.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rkgeneric.hxx:34, from rkgeneric.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from rkgeneric.hxx:34, from rkgeneric.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkscheme.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkschemefactory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from split-rk.hxx:36, from split-rk.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from split-rk.hxx:36, from split-rk.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40, from solver.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40, from solver.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:11: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/mpich-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:3: /usr/include/mpich-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7, from solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7, from solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_region.cxx Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_ini.cxx Compiling fv_ops.cxx In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33, from options_ini.cxx:52: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33, from options_ini.cxx:52: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8, from fv_ops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8, from fv_ops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_netcdf.cxx Compiling bout_types.cxx In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from bout_types.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/mpich-x86_64/ncFile.h:2, from /usr/include/mpich-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/mpich-x86_64/ncGroup.h: At global scope: /usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling boutexception.cxx In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from boutexception.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from boutexception.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from boutexception.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling derivs.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from msg_stack.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from msg_stack.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling utils.cxx Compiling optionsreader.cxx In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33, from utils.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33, from utils.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutcomm.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling timer.cxx Compiling range.cxx Compiling petsclib.cxx Compiling expressionparser.cxx Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field2d.hxx:34, from type_name.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field2d.hxx:34, from type_name.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++.cxx In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../include/field.hxx:34, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../include/field.hxx:34, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Recreating libbout++.a make -C tools/pylib python3 Creating libbout++.so make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd yes - deflt yes - centre yes - xlow yes - ylow yes - zlow yes - vshift yes - deflt yes - u1 yes - u2 yes - c2 yes - w2 yes - w3 yes - c4 yes - u3 yes - fft yes - split yes - s2 yes - all yes - nobndry yes - nox yes - noy yes - noz yes - X yes - Y yes - Z yes - YAligned yes - YOrthogonal yes - Standard yes - Aligned yes - Standard yes - Average yes - C2L yes - L2C yes - Standard yes - StandardSecond yes - StandardFourth yes - Upwind yes - Flux yes - standard yes - simple yes - arakawa yes - ctu yes - arakawa_old Generating boutcpp.pxd /usr/lib64/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'language_level' warnings.warn(msg) /usr/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/_boutcore_build/boutcore.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-3.9 mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.9 -c boutcore.cpp -o build/temp.linux-x86_64-3.9/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, from boutcore.cpp:902: /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from boutcore.cpp:883: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx:147:15: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from boutcore.cpp:876: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from boutcore.cpp:883: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx:147:34: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from boutcore.cpp:876: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_6DDX(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:37690:96: warning: ‘Field3D DDX(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 37690 | __pyx_t_6 = DDX((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:95:34: note: declared here 95 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDX, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_8D2DX2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:37980:98: warning: ‘Field3D D2DX2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 37980 | __pyx_t_6 = D2DX2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:225:34: note: declared here 225 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DX2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_10VDDX(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38282:126: warning: ‘Field3D VDDX(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38282 | __pyx_t_6 = VDDX((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:420:35: note: declared here 420 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDX, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_12FDDX(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38584:126: warning: ‘Field3D FDDX(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38584 | __pyx_t_6 = FDDX((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:539:35: note: declared here 539 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDX, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_14DDY(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38874:96: warning: ‘Field3D DDY(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38874 | __pyx_t_6 = DDY((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:127:34: note: declared here 127 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDY, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_16D2DY2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39164:98: warning: ‘Field3D D2DY2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39164 | __pyx_t_6 = D2DY2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:257:34: note: declared here 257 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DY2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_18VDDY(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39466:126: warning: ‘Field3D VDDY(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39466 | __pyx_t_6 = VDDY((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:454:35: note: declared here 454 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDY, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_20FDDY(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39768:126: warning: ‘Field3D FDDY(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39768 | __pyx_t_6 = FDDY((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:573:35: note: declared here 573 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDY, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_22DDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40058:96: warning: ‘Field3D DDZ(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40058 | __pyx_t_6 = DDZ((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:159:34: note: declared here 159 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDZ, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_24D2DZ2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40348:98: warning: ‘Field3D D2DZ2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40348 | __pyx_t_6 = D2DZ2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:289:34: note: declared here 289 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DZ2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_26VDDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40650:126: warning: ‘Field3D VDDZ(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40650 | __pyx_t_6 = VDDZ((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:488:35: note: declared here 488 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDZ, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_28FDDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40952:126: warning: ‘Field3D FDDZ(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40952 | __pyx_t_6 = FDDZ((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:607:35: note: declared here 607 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDZ, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: At global scope: boutcore.cpp:25004:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 25004 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:49221:10: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 49221 | return __pyx_r; | ^~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_region(_object*)’: boutcore.cpp:50045:10: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 50045 | return __pyx_r; | ^~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’: boutcore.cpp:42619:141: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42619 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2569, __pyx_L1_error) | ^ boutcore.cpp:50732:18: note: ‘__pyx_r’ was declared here 50732 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.9 -c boutexception_helper.cxx -o build/temp.linux-x86_64-3.9/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include -I/usr/include -I/usr/include -I/usr/include/mpich-x86_64/petsc -I. -I/usr/include/python3.9 -c helper.cxx -o build/temp.linux-x86_64-3.9/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx:147:15: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:34, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx:147:34: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx:34, from /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx:30, from helper.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ mpic++ -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.9/boutcore.o build/temp.linux-x86_64-3.9/boutexception_helper.o build/temp.linux-x86_64-3.9/helper.o -L/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/mpich/lib -L/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib -L/usr/lib64 -lm -lbout++ -ldl -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/_boutcore_build/boutcore.cpython-39-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... 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Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rkscheme.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rkscheme.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rvec.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rvec.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/scorepwrapper.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/scorepwrapper.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/slepclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/slepclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/snb.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/snb.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solver.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solver.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solverfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solverfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/surfaceiter.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/surfaceiter.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/expressionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/expressionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/gettext.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/gettext.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/range.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/range.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/timer.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/timer.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/type_name.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/type_name.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/uncopyable.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/uncopyable.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/template_combinations.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/template_combinations.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/traits.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/traits.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout_types.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout_types.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutcomm.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutcomm.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutexception.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutexception.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutmain.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutmain.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/datafile.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/datafile.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dcomplex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dcomplex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fft.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fft.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_data.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_data.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fieldperp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fieldperp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/globals.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/globals.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/initialprofiles.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/initialprofiles.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_parderiv.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_parderiv.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/lapack_routines.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/lapack_routines.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/mask.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/mask.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/multiostream.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/multiostream.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options_netcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/optionsreader.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/optionsreader.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/output.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/output.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/band.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/band.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvdiag.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvdiag.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvode.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/nvector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/pvbbdpre.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/pvbbdpre.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/smalldense.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/smalldense.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/spgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/spgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/vector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/vector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/smoothing.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/smoothing.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/sourcex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/sourcex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/stencils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/stencils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/unused.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/unused.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/utils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/utils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vecops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vecops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/where.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/where.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/bout++.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/bout++.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/fft_fftw.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/fft_fftw.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/lapack_routines.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/lapack_routines.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromfile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromfile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/fv_ops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/fv_ops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/index_derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/index_derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/mesh.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/mesh.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/derivs.cxx... Preprocessing /bui/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:558: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:599: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:677: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:739: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:841: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:882: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:964: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx:1039: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' lddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/output.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data strucsh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! tures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/scorepwrapper.hxx... Generat/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx:299: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx:208: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:61: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:91: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:131: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ing docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/template_combinations.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/traits.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout_types.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutexception.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/boutmain.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/cyclic_reduction.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/datafile.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dcomplex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fft.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_data.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/fieldperp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/globals.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/initialprofiles.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/interpolation_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_parderiv.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/lapack_routines.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/mask.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/msg_stack.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/multiostream.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options_netcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/optionsreader.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/output.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/parallel_boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/band.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvdiag.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvode.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/cvspgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/iterativ.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnlmath.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/llnltyps.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/nvector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/pvbbdpre.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/smalldense.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/spgmr.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/vector.h... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/smoothing.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/sourcex.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/stencils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/unused.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/utils.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vecops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector2d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/vector3d.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/where.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/bout++.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_data.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/field_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgenerators.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldgroup.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/fieldperp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/gen_fieldops.py... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/generated_fieldops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/globalfield.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/initialprofiles.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vecops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector2d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/vector3d.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/where.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/datafile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/dataformat.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/formatfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/emptyformat.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/pnetcdf.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/fft_fftw.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/lapack_routines.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/pdd.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.cxx... Generating docs for file /builddir/build/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx:287: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx:274: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/serial_band.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/serial_tri.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/laplacefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexy/laplacexy.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/laplacexz.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/invert_parderiv.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/parderiv_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/boundary_standard.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/coordinates.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromfile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/gridfromoptions.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/fv_ops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/boutmesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/index_derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/bilinear.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/interpolation_factory.cxx./builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:78: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:119: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:149: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' .. Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/fci.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/sourcex.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/arkode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/cvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/euler.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ida.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/karniadakis.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/power.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/pvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/rk4.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkgeneric.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkscheme.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/rkschemefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/slepc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/snes.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/split-rk.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solver.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/solverfactory.cxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_ini.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/B/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found OUT++-v4.3.2/build_mpich/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/timer.cxx... 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Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet... Generating docs for compound BoundaryOpPar_dirichlet_interp... Generating docs for compound BoundaryOpPar_dirichlet_O3... Generating docs for compound BoundaryOpPar_neumann... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::IndexPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for compound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ConditionalOutput... Generating docs for compound Coordinates... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce... Generating docs for compound Datafile... Generating docs for nested compound Datafile::VarStr... Generating docs for compound Da/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:207: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:191: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:175: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/generic_factory.hxx:57: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field2d.hxx:67: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/griddata.hxx:217: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/griddata.hxx:191: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:131: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:130: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:129: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:185: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:212: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections taFormat... Generating docs for compound DeferredFunction... Generating docs for compound DerivativeStore... Generating docs for compound DerivativeType... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... Generating docs for compound FieldCosh... Generating docs for compound FieldData... Generating docs for compound FieldErf... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg... Generating docs for compound FieldGenTwoArg... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldSin... Generating docs for compound FieldSinh... Generating docs for compound FieldSqrt... Generating docs for compound FieldTanh... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldVisitor... Generating docs for compound FormatFactory... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound H5Format... Generating docs for compound HermiteSpline... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound Interpolation... Generating docs for compound InterpolationFactory... Generating docs for compound InvertPar... Generating docs for compound InvertParCR... Generating docs for compound KarniadakisSolver... Generating docs for compound Lagrange4pt... Generating docs for compound LaplaceCyclic... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/mesh.hxx:730: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/mesh.hxx:748: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:135: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:134: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:133: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:136: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:135: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:134: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:160: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:160: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:164: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/paralleltransform.hxx:265: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/paralleltransform.hxx:284: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/surfaceiter.hxx:37: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs_interface.hxx:292: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating docs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory... Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generating docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::exp/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/array.hxx:385: warning: Unsupported xml/html tag found erimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::InvertableOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for compound FV::Fromm... Generating docs for compound FV::MinMod... Generating docs for compound FV::MC... Generating docs for namespace gen_fieldops Generating docs for compound gen_fieldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils::_Unique_if< T[N]> Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class BoundaryFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:175: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:191: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/dataformat.hxx:207: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/generic_factory.hxx:57: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/field2d.hxx:67: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Generating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generating XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNu/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/griddata.hxx:191: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/griddata.hxx:217: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:129: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:130: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/h5_format.hxx:131: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:185: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:212: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/invert_laplace.hxx:255: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/mesh.hxx:730: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/mesh.hxx:748: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:133: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:134: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/nc_format.hxx:135: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:134: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:135: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ncxx4.hxx:136: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:160: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:160: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/options.hxx:164: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' ll Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML output for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for class OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for c/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/paralleltransform.hxx:265: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/paralleltransform.hxx:284: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/surfaceiter.hxx:37: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/index_derivs_interface.hxx:292: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' lass ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetrics Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil Generating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @106 Generating XML output for namespace @107 Generating XML output for namespace @175 Generating XML output for namespace @176 Generating XML output for namespace @177 Generating XML output for namespace @189 Generating XML output for namespace @205 Generating XML output for namespace @207 Generating XML output for namespace @209 Generating XML output for namespace @211 Generating XML output for namespace @213 Generating XML output for namespace @215 Generating XML output for namespace @217 Generating XML output for namespace @219 Generating XML output for namespace @221 Generating XML output for namespace @223 Generating XML output for namespace @225 Generating XML output for namespace @235 Generating XML output for namespace @240 Generating XML output for namespace @242 Generating XML output for namespace @244 Generating XML output for namespace @247 Generating XML output for namespace @251 Generating XML output for namespace @256 Generating XML output for namespace @4 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Gene/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx:208: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/difops.hxx:299: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:61: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:91: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:131: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' rating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML output for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fieldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx:274: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/difops.cxx:287: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:78: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:119: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/gyro_average.cxx:149: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file parderiv_factory.hxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmetric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file cashkarp.hxx Generating XML output for file rk4simple.cxx Generating XML output for file rk4simple.hxx Generating XML output for file rkf34.cxx Generating XML output for file rkf34.hxx Generating XML output for file rkf45.cxx Generating XML output for file rkf45.hxx Generating XML output for file rkgeneric.cxx Generating XML output for file rkgeneric.hxx Generating XML output for file rkscheme.cxx Generating XML output for file rkschemefactory.cxx Generating XML output for file rkschemefactory.hxx Generating XML output for file slepc.cxx Generating XML output for file slepc.hxx Generating XML output for file snes.cxx Generating XML output for file snes.hxx Generating XML output for file split-rk.cxx Generating XML output for file split-rk.hxx Generating XML output for file solver.cxx Generating XML output for file solverfactory.cxx Generating XML output for file bout_types.cxx Generating XML output for file boutcomm.cxx Generating XML output for file boutexception.cxx Generating XML output for file derivs.cxx Generating XML output for file expressionparser.cxx Generating XML output for file msg_stack.cxx Generating XML output for file options.cxx Generating XML output for file optionparser.hxx Generating XML output for file options_ini.cxx Generating XML output for file options_ini.hxx Generating XML output for file options_netcdf.cxx Generating XML output for file optionsreader.cxx Generating XML output for file output.cxx Generating XML output for file petsclib.cxx Generating XML output for file range.cxx Generating XML output for file slepclib.cxx Generating XML output for file timer.cxx Generating XML output for file type_name.cxx Generating XML output for file utils.cxx Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/arkode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/bout/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/cashkarp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/cvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/cyclic/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/data/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/euler/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/field/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/hdf5/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ida/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/imex-bdf2/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/interpolation/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/invert/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/karniadakis/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexy/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/multigrid/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/mumps/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/naulin/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/netcdf4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/options/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/mesh/parallel/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/parderiv/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/pdd/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplacexz/impls/petsc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/physics/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/fileio/impls/pnetcdf/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/power/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/pvode/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk3-ssp/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rk4/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rk4simple/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf34/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/impls/rkf45/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/rkgeneric/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_band/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/serial_tri/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/shoot/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/slepc/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/snes/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/src/sys/ Generating XML output for the main page Running plantuml with JAVA... lookup cache used 17446/65536 hits=224989 misses=18182 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v3.3.1 breathe module not installed recommonmark module not installed making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 40 source files that are out of date updating environment: [new config] 40 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/data.py:191: SyntaxWarning: "is" with a literal. Did you mean "=="? if sectionname is "root": /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/data.py:206: SyntaxWarning: "is not" with a literal. Did you mean "!="? if nested_sectionname is not "": /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/data.py:217: SyntaxWarning: "is not" with a literal. Did you mean "!="? if nested_sectionname is not "": reading sources... [ 5%] _apidoc/boututils /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boututils/options.py:94: SyntaxWarning: "is not" with a literal. Did you mean "!="? if len(line) > 0 and line[0] is not '#': No mlab available reading sources... [ 7%] _apidoc/zoidberg /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/poloidal_grid.py:32: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/rzline.py:18: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/plot.py:12: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") reading sources... [ 10%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 15%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 20%] developer_docs/file_io reading sources... [ 22%] developer_docs/git_basics reading sources... 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[100%] user_docs/variable_init WARNING: missing attribute mentioned in :members: or __all__: module boutdata, attribute gen_surface WARNING: missing attribute mentioned in :members: or __all__: module boutdata, attribute pol_slice WARNING: autodoc: failed to import module 'cbdtoeqdsk' from module 'boutdata'; the following exception was raised: No module named 'bunch' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'griddata' from module 'boutdata'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' WARNING: autodoc: failed to import module 'mms' from module 'boutdata'; the following exception was raised: No module named 'sympy' /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/restart.py:docstring of boutdata.restart.normal:55: WARNING: Footnote [1] is not referenced. WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute calculus WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute closest_line WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func looking for now-outdated files... WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute linear_regression WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute run_wrapper WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_integrate' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotdata' from module 'boututils'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'read_geqdsk' from module 'boututils'; the following exception was raised: No module named 'bunch' WARNING: autodoc: failed to import module 'showdata' from module 'boututils'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/__init__.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/mpich/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio none found pickling environment... done checking consistency... done /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst: WARNING: document isn't included in any toctree preparing documents... done writing output... [ 2%] _apidoc/boutdata writing output... [ 5%] _apidoc/boututils writing output... [ 7%] _apidoc/zoidberg writing output... [ 10%] api_reference writing output... [ 12%] developer_docs/code_layout writing output... [ 15%] developer_docs/contributing writing output... [ 17%] developer_docs/data_types writing output... [ 20%] developer_docs/file_io writing output... [ 22%] developer_docs/git_basics writing output... [ 25%] developer_docs/mesh writing output... [ 27%] developer_docs/natural_language writing output... [ 30%] developer_docs/performance_profiling writing output... [ 32%] index writing output... [ 35%] user_docs/BOUT_Gradperp_op writing output... [ 37%] user_docs/advanced_install writing output... [ 40%] user_docs/algebraic_operators writing output... [ 42%] user_docs/boundary_options writing output... [ 45%] user_docs/bout_functions_for_physics writing output... [ 47%] user_docs/bout_options writing output... [ 50%] user_docs/coordinates writing output... [ 52%] user_docs/differential_operators writing output... [ 55%] user_docs/eigenvalue_solver writing output... [ 57%] user_docs/input_grids writing output... [ 60%] user_docs/installing writing output... [ 62%] user_docs/introduction writing output... [ 65%] user_docs/invertable_operator writing output... [ 67%] user_docs/laplacian writing output... [ 70%] user_docs/makefiles writing output... [ 72%] user_docs/nonlocal writing output... [ 75%] user_docs/output_and_post writing output... [ 77%] user_docs/parallel-transforms writing output... [ 80%] user_docs/physics_models writing output... [ 82%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 87%] user_docs/python_boutcore writing output... [ 90%] user_docs/running_bout writing output... [ 92%] user_docs/staggered_grids writing output... [ 95%] user_docs/testing writing output... [ 97%] user_docs/time_integration writing output... [100%] user_docs/variable_init /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tools/pylib/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: random-quick-start (if the link has no caption the label must precede a section header) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: ../_breathe_autogen/file/field2d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: ../_breathe_autogen/file/field3d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: ../_breathe_autogen/file/field__data_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: ../_breathe_autogen/file/fieldperp_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: ../_breathe_autogen/file/initialprofiles_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: ../_breathe_autogen/file/vecops_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: ../_breathe_autogen/file/difops_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: ../_breathe_autogen/file/vector2d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: ../_breathe_autogen/file/vector3d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: ../_breathe_autogen/file/where_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: ../_breathe_autogen/file/datafile_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:145: WARNING: unknown document: ../_breathe_autogen/file/formatfactory_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:147: WARNING: unknown document: ../_breathe_autogen/file/formatfactory_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:151: WARNING: unknown document: ../_breathe_autogen/file/emptyformat_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:155: WARNING: unknown document: ../_breathe_autogen/file/h5__format_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:158: WARNING: unknown document: ../_breathe_autogen/file/h5__format_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: ../_breathe_autogen/file/nc__format_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:165: WARNING: unknown document: ../_breathe_autogen/file/nc__format_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:169: WARNING: unknown document: ../_breathe_autogen/file/ncxx4_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: ../_breathe_autogen/file/ncxx4_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:177: WARNING: unknown document: ../_breathe_autogen/file/pnetcdf_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:180: WARNING: unknown document: ../_breathe_autogen/file/pnetcdf_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: ../_breathe_autogen/file/fft__fftw_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:184: WARNING: unknown document: ../_breathe_autogen/file/fft_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:193: WARNING: unknown document: ../_breathe_autogen/file/invert__laplace_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: ../_breathe_autogen/file/laplacefactory_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:197: WARNING: unknown document: ../_breathe_autogen/file/laplacefactory_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:203: WARNING: unknown document: ../_breathe_autogen/file/serial__tri_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:205: WARNING: unknown document: ../_breathe_autogen/file/serial__tri_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: ../_breathe_autogen/file/serial__band_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:211: WARNING: unknown document: ../_breathe_autogen/file/serial__band_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:215: WARNING: unknown document: ../_breathe_autogen/file/spt_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:217: WARNING: unknown document: ../_breathe_autogen/file/spt_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:221: WARNING: unknown document: ../_breathe_autogen/file/pdd_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:223: WARNING: unknown document: ../_breathe_autogen/file/pdd_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:228: WARNING: unknown document: ../_breathe_autogen/file/invert__parderiv_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:232: WARNING: unknown document: ../_breathe_autogen/file/parderiv__factory_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: ../_breathe_autogen/file/parderiv__factory_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: ../_breathe_autogen/file/serial_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:242: WARNING: unknown document: ../_breathe_autogen/file/serial_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:246: WARNING: unknown document: ../_breathe_autogen/file/cyclic_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:248: WARNING: unknown document: ../_breathe_autogen/file/cyclic_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:252: WARNING: unknown document: ../_breathe_autogen/file/lapack__routines_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:256: WARNING: unknown document: ../_breathe_autogen/file/boundary__factory_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:260: WARNING: unknown document: 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/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:372: WARNING: unknown document: ../_breathe_autogen/file/output_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:374: WARNING: unknown document: ../_breathe_autogen/file/range_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:378: WARNING: unknown document: ../_breathe_autogen/file/stencils_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:382: WARNING: unknown document: ../_breathe_autogen/file/timer_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:386: WARNING: unknown document: ../_breathe_autogen/file/utils_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:392: WARNING: unknown document: ../_breathe_autogen/file/optionparser_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:394: WARNING: unknown document: ../_breathe_autogen/file/options__ini_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/code_layout.rst:396: WARNING: unknown document: ../_breathe_autogen/file/options__ini_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'mesh:maxregionblocksize' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/griddata_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/datafile_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/datafile_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: ../_breathe_autogen/file/dataformat_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/field2d_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/field3d_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/fieldperp_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/installing.rst:358: WARNING: undefined label: sec-install-bout (if the link has no caption the label must precede a section header) /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: ../_breathe_autogen/file/invert__laplace_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: tab-snb-options /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/sphinx/user_docs/time_integration.rst:916: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] user_docs/../figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... [ 26%] figs/topology_cross_section.png copying images... [ 30%] figs/topology_schematic.png copying images... [ 34%] figs/boutmesh-comms.png copying images... [ 39%] figs/grid_gen.png copying images... [ 43%] user_docs/../figs/zoidberg/elliptic_grid.png copying images... [ 47%] user_docs/../figs/zoidberg/poincare.png copying images... [ 52%] figs/5PointStencilMesh.png copying images... [ 56%] figs/5PointStencilMeshWithStencil.png copying images... [ 60%] figs/5PointStencilMatrix.png copying images... [ 65%] figs/5PointStencilGlobalIndices.png copying images... [ 69%] figs/par_laplace.png copying images... [ 73%] figs/snb-sinusoidal.png copying images... [ 78%] figs/snb-step.png copying images... [ 82%] figs/interchange_inst_test.png copying images... [ 86%] figs/sod_result.png copying images... [ 91%] figs/folder_tree.png copying images... [ 95%] figs/stagLocations.png copying images... [100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 180 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/manual' + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib;' export 'LD_LIBRARY_PATH; unset' 'MPI_COMPILER; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' 'MPI_MAN; unset' 'MPI_PYTHON_SITEARCH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_HOME; ~/build/BUILD/BOUT++-v4.3.2 ~/build/BUILD/BOUT++-v4.3.2/build_openmpi ~/build/BUILD/BOUT++-v4.3.2 LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib:1;' export 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' 'MPI_SUFFIX; unset' 'MPI_PYTHON2_SITEARCH; unset' '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib ++ export LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ unset MPI_PYTHON2_SITEARCH ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + popd + for mpi in mpich openmpi + pushd build_openmpi + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib;' export 'LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:;' export 'MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH; MODULES_LMCONFLICT_modshare=mpi/openmpi-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR; MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX; LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib:1:/usr/lib64/openmpi/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG; _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/openmpi-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN; PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/openmpi-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/lib:1:/usr/lib64/openmpi/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/openmpi-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=mpicc + export CC + CXX=mpicxx + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./tools/pdb2idl/configure + diff -u ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + mv ./tools/pdb2idl/configure.backup ./tools/pdb2idl/configure + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2021-01-17 14:29:36.015190724 +0000 +++ ./configure 2021-01-17 14:41:13.571107363 +0000 @@ -1953,7 +1953,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./build-aux/config.sub ++ basename ./build-aux/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./build-aux/config.sub '/usr/lib/rpm/redhat/config.sub' -> './build-aux/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./build-aux/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./build-aux/config.guess ++ basename ./build-aux/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./build-aux/config.guess '/usr/lib/rpm/redhat/config.guess' -> './build-aux/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh + for i in $(find . -name ltmain.sh) + /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld"~' ./build-aux/ltmain.sh + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-netcdf --with-hdf5 --enable-shared --with-system-mpark --libdir=/usr/lib64/openmpi/lib --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/lib64/openmpi/sbin --includedir=/usr/include/openmpi-x86_64 --datarootdir=/usr/share --with-petsc --with-sundials configure: WARNING: unrecognized options: --disable-dependency-tracking checking for x86_64-redhat-linux-gnu-mpic++... no checking for x86_64-redhat-linux-gnu-mpicxx... no checking for x86_64-redhat-linux-gnu-mpiCC... no checking for x86_64-redhat-linux-gnu-sxmpic++... no checking for x86_64-redhat-linux-gnu-hcp... no checking for x86_64-redhat-linux-gnu-mpxlC_r... no checking for x86_64-redhat-linux-gnu-mpxlC... no checking for x86_64-redhat-linux-gnu-mpixlcxx_r... no checking for x86_64-redhat-linux-gnu-mpixlcxx... no checking for x86_64-redhat-linux-gnu-mpg++... no checking for x86_64-redhat-linux-gnu-mpc++... no checking for x86_64-redhat-linux-gnu-mpCC... no checking for x86_64-redhat-linux-gnu-cmpic++... no checking for x86_64-redhat-linux-gnu-mpiFCC... no checking for x86_64-redhat-linux-gnu-CCicpc... no checking for x86_64-redhat-linux-gnu-pgCC... no checking for x86_64-redhat-linux-gnu-pathCC... no checking for x86_64-redhat-linux-gnu-sxc++... no checking for x86_64-redhat-linux-gnu-xlC_r... no checking for x86_64-redhat-linux-gnu-xlC... no checking for x86_64-redhat-linux-gnu-bgxlC_r... no checking for x86_64-redhat-linux-gnu-bgxlC... no checking for x86_64-redhat-linux-gnu-openCC... no checking for x86_64-redhat-linux-gnu-sunCC... no checking for x86_64-redhat-linux-gnu-crayCC... no checking for x86_64-redhat-linux-gnu-aCC... no checking for x86_64-redhat-linux-gnu-CC... no checking for x86_64-redhat-linux-gnu-g++... no checking for x86_64-redhat-linux-gnu-c++... no checking for x86_64-redhat-linux-gnu-gpp... no checking for x86_64-redhat-linux-gnu-cxx... no checking for x86_64-redhat-linux-gnu-cc++... no checking for x86_64-redhat-linux-gnu-cl.exe... no checking for x86_64-redhat-linux-gnu-FCC... no checking for x86_64-redhat-linux-gnu-KCC... no checking for x86_64-redhat-linux-gnu-RCC... no checking for mpic++... mpic++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mpic++ accepts -g... yes checking for function MPI_Init... yes checking for mpi.h... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking for a BSD-compatible install... /usr/bin/install -c checking for gmake... gmake checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking whether mpic++ supports C++11 features by default... yes checking for sqrt in -lm... yes checking how to run the C++ preprocessor... mpic++ -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for vprintf... yes checking for _doprnt... no checking does C++ compiler support __PRETTY_FUNCTION__... yes checking for a sed that does not truncate output... /usr/bin/sed checking whether to build with code coverage support... no checking whether C++ compiler accepts -Werror=unknown-warning-option... no checking whether C++ compiler accepts -we10006,10148... no checking whether C++ compiler accepts -Wall... yes checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnull-dereference... yes checking whether C++ compiler accepts -Wno-cast-function-type... yes configure: Enabling default optimisations checking whether C++ compiler accepts -O2... yes configure: Run-time checking enabled configure: -> Level 2 (Basic checking + stack tracing) configure: Segmentation fault handling enabled configure: Output coloring enabled configure: Field name tracking disabled configure: Signaling floating point exceptions disabled checking for addr2line... yes checking for popen... yes checking for backtrace... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking for library containing dladdr... -ldl configure: Native backtrace enabled ./configure: line 6363: git: command not found checking for fftw-wisdom... /usr/bin/fftw-wisdom checking for fftw3.h... yes checking for libfftw3... yes checking for ncxx4-config... /usr/bin/ncxx4-config configure: -> NetCDF-4 support enabled configure: Parallel-NetCDF support disabled checking for gawk... gawk checking for x86_64-redhat-linux-gnu-gcc... mpicc checking whether we are using the GNU C compiler... yes checking whether mpicc accepts -g... yes checking for mpicc option to accept ISO C89... none needed checking how to run the C preprocessor... mpicc -E checking for h5cc... /usr/bin/h5cc checking for HDF5 type... serial checking for HDF5 libraries... yes (version 1.10.6) checking hdf5.h usability... yes checking hdf5.h presence... yes checking for hdf5.h... yes checking for H5Fcreate in -lhdf5... yes checking for main in -lhdf5_hl... yes configure: Found HDF5 configure: Parallel HDF5 support disabled configure: Supported file formats: netCDF HDF5 checking for libblas... no checking for liblapack... no checking for x86_64-redhat-linux-gnu-pkg-config... /usr/bin/x86_64-redhat-linux-gnu-pkg-config checking pkg-config is at least version 0.9.0... yes configure: Using PETSC_DIR=, PETSC_ARCH= checking for //conf... no checking for //lib/petsc/conf... no checking for PETSC... yes checking PETSc has SUNDIALS support... no checking for SUNDIALS config header... yes checking for SUNDIALS minor version... ok configure: Searching for SUNDIALS IDA library checking for sundials-config... no checking if we can compile with SUNDIALS IDA... configure: WARNING: No sundials-config available, no path given, will try compiling with IDA anyway yes configure: Using SUNDIALS IDA solver configure: => IDA solver enabled configure: Searching for SUNDIALS CVODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with CVODE anyway checking if we can compile with SUNDIALS CVODE... yes configure: Using SUNDIALS CVODE solver configure: => CVODE solver enabled configure: Searching for SUNDIALS ARKODE library checking for sundials-config... (cached) no configure: WARNING: No sundials-config available, no path given, will try compiling with ARKODE anyway checking if we can compile with SUNDIALS ARKODE... yes configure: Using SUNDIALS ARKODE solver configure: => ARKODE solver enabled configure: Scorep support disabled checking for mpark.variant... yes configure: PVODE being built without OpenMP support configure: Building PVODE configure: Successfully built PVODE configure: Installing PVODE into BOUT++ sourcetree checking whether NLS is requested... yes checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for ld used by mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... /bin/sh: build-aux/config.rpath: No such file or directory done checking 32-bit host C ABI... no checking for ELF binary format... yes checking for the common suffixes of directories in the library search path... lib,lib,lib64 checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyPreferredLanguages... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc configure: Enabling language support with gettext gmake: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/locale' Building language: de Building language: es Building language: fr Building language: zh_CN Building language: zh_TW gmake: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/locale' configure: creating ./config.status config.status: creating make.config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: creating ./config.status config.status: creating make.config config.status: creating bin/bout-config config.status: executing po-directories commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: ------------------------- configure: Configuration summary configure: ------------------------- configure: PETSc support : yes (has SUNDIALS: no) configure: SLEPc support : no configure: IDA support : yes configure: CVODE support : yes configure: ARKODE support : yes configure: FFTW support : yes configure: NetCDF support : yes configure: Parallel-NetCDF support : no configure: HDF5 support : yes (parallel: no) configure: MUMPS support : no configure: Lapack support : no configure: Scorep support : no configure: OpenMP support : no (schedule: ) configure: Natural language support: yes (path: ${datarootdir}/locale) configure: configure: ------------------------------- configure: Data analysis configuration configure: ------------------------------- configure: configure: === IDL === configure: configure: Make sure that the tools/idllib directory is in your IDL_PATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export IDL_PATH=+/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/idllib:'':$IDL_PATH configure: configure: === Python === configure: configure: Make sure that the tools/pylib directory is in your PYTHONPATH configure: e.g. by adding to your ~/.bashrc file configure: configure: export PYTHONPATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/:$PYTHONPATH configure: configure: *** Now run 'gmake' to compile BOUT++ *** + sed -e 's| -L/usr/lib64 | |g' -e 's| -Wl,--as-needed | |g' -i make.config + sed -e 's|-lblas|-lflexiblas|g' -e 's|-llapack|-lflexiblas|g' -i make.config + cat make.config # configuration file for BOUT++ # September 2008: Converted to use autoconf. Can be manually edited # for the (very) rare occasions when autoconf fails # extra compilation flags: # -DCHECK=lvl Enables a host of additional checks on each operation # such as uninitialised data if lvl is > 0. -DCHECK=3 # enables all tests, while -DCHECK=0 disables them. # Helps when debugging # -DTRACK Keeps track of variable names. # Enables more useful error messages # for SSE2: -msse2 -mfpmath=sse # # This must also specify one or more file formats # -DPDBF PDB format (need to include pdb_format.cxx) # -DNCDF NetCDF format (nc_format.cxx) # PETSc config variables need to be first, else they may clobber other # options (e.g. CXX, CXXFLAGS) PETSC_DIR ?= PETSC_ARCH ?= SLEPC_DIR ?= SLEPC_ARCH ?= # These lines can be replaced in "make install" to point to install directories # They are used in the CXXFLAGS variable below rather than hard-coding the directories BOUT_INCLUDE_PATH=$(BOUT_TOP)/include BOUT_LIB_PATH=$(BOUT_TOP)/lib BOUT_CONFIG_FILE=$(BOUT_TOP)/make.config prefix = /usr exec_prefix = /usr datarootdir = /usr/share # This path to the locale (.mo) files is hard-wired into bout++.cxx at compile time BOUT_LOCALE_PATH=${datarootdir}/locale # Created this variable so that a user won't overwrite the CXXFLAGS variable # on the command line, just add to this one BOUT_FLAGS = $(CXXFLAGS) -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING="\"4.3.2\"" -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=$(BOUT_LOCALE_PATH) #Use := here to force a "static" evaluation of the current state of BOUT_FLAGS to #avoid infinite recursion that would arise if BOUT_FLAGS appeared on both sides of = BOUT_FLAGS := $(BOUT_FLAGS) -DBOUT_FLAGS_STRING="$(BOUT_FLAGS)" # Specify the MPI C++ compiler in CXX CXX = mpic++ CC = $(CXX) AR = ar ARFLAGS = cruU RANLIB = ranlib MKDIR = /usr/bin/mkdir -p #################################################################### # Do not need to alter anything below #################################################################### LD = $(CXX) LDFLAGS = -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld LIBS = -ldl -lm CPPFLAGS = #################################################################### # Extra (optional) source files, includes and libs # NOTE: EXTRA_SRC must include a solver (solver.cxx or ida_solver.cxx) # and a file format (nc_format.cxx or pdb_format.cxx) #################################################################### EXTRA_INCS = $(CPPFLAGS) -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc EXTRA_LIBS = $(LIBS) -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -L/usr/lib64/openmpi/lib -lpetsc -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -L$(BOUT_LIB_PATH) -lpvode -lpvpre PRECON_SOURCE = BOUT_VERSION = 4.3.2 #################################################################### # These are used for compiling physics modules using BOUT++ library #################################################################### # Files that are needed by configure and should be dependencies for 'all' OBJ = $(SOURCEC:%.cxx=%.o) ifndef RELEASED # If this is part of an packaged and installed installation, the user cannot # write these files, so they shouldn't be changed. Thus only set this, in # the non installed case. LIB = $(BOUT_LIB_PATH)/libbout++.a LIB_SO = $(BOUT_LIB_PATH)/libbout++.so endif MPARK_VARIANT_INCLUDE_PATH= BOUT_INCLUDE = -I$(BOUT_INCLUDE_PATH) $(CXXINCLUDE) $(EXTRA_INCS) BOUT_LIBS = -lm -L$(BOUT_LIB_PATH) -lbout++ $(EXTRA_LIBS) CHANGED = $(shell find -f $(BOUT_TOP)/include $(BOUT_TOP)/src -type f \( -name \*.cxx -or -name \*.h \) -newer $(LIB) -print 2> /dev/null) # This will set a default if no TARGET is provided TARGET ?= $(SOURCEC:%.cxx=%) #################################################################### # Definining stuff for recursive make #################################################################### # Phony targets since they are directory names .PHONY: $(DIRS) lib install libfast runtest manual sphinx doxygen ifneq ("$(TARGET)","libfast") all: $(BOUT_CONFIG_FILE) $(DIRS) $(TARGET) else all: $(BOUT_TOP)/config.status $(BOUT_CONFIG_FILE) $(DIRS) endif libfast: $(BOUT_CONFIG_FILE) $(DIRS) #################################################################### # Recursively run make through subdirs #################################################################### ifeq ("$(TARGET)" , "lib") $(DIRS): # make $@ slowly using the old method where parallel builds can cause # race conditions that @$(MAKE) -s --no-print-directory TARGET=lib -C $@ all else ifeq ("$(TARGET)","libfast") $(DIRS): # make $@ using the libfast method, where all .o files # are only created in the end @$(MAKE) -s --no-print-directory TARGET=$(TARGET) -C $@ $(TARGET) else MODULE_DIR?=$(shell pwd) $(DIRS): # MODULE_DIR: pass the module directory, where the libraries should be # created. # SUB_NAME is used for creating a library with the expected name. # first a potential trailing slash is removed, and after that the # directory name is extracted. 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This way the .a file doesn't need to be preserved/installed sed -i '26 i RELEASED = yes' $(INSTALL_INCLUDE_PATH)/make.config uninstall: $(PRE_UNINSTALL) # Pre-uninstall commands follow. $(NORMAL_UNINSTALL) # Normal commands follow. $(RM) -r $(DESTDIR)/usr/share/bout++/pylib/boututils/ $(RM) -r $(DESTDIR)/usr/share/bout++/pylib/boutdata/ $(RM) -r $(DESTDIR)/usr/share/bout++/idllib/ $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-config $(RM) $(DESTDIR)/usr/lib64/openmpi/bin/bout-log-color $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libbout++.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvode.a $(RM) $(DESTDIR)/usr/lib64/openmpi/lib/libpvpre.a $(RM) -r $(DESTDIR)/usr/include/openmpi-x86_64/bout++/ $(RM) $(DESTDIR)${datarootdir}/locale/*/LC_MESSAGES/libbout.mo $(POST_UNINSTALL) # Post-uninstall commands follow. #################################################################### # Builds the library with $(OBJ) which is defined from the SOURCEC variable #################################################################### # Rules for downloading submodules include $(BOUT_TOP)/makefile.submodules ifeq ("$(TARGET)", "libfast") libfast: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(OBJ) $(DIRS) endif ifeq ("$(TARGET)", "lib") lib: makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to libbout++.a" @$(AR) $(ARFLAGS) $(LIB) $(OBJ) @$(RANLIB) $(LIB) endif endif ifeq ("$(TARGET)", "sub") LIB=$(MODULE_DIR)/$(SUB_NAME).a sub:$(LIB) $(LIB): makefile $(BOUT_CONFIG_FILE) $(BOUT_TOP)/include $(BOUT_TOP)/lib $(OBJ) ifneq ("$(OBJ)foo", "foo") @echo " Adding $(OBJ) to $(LIB)" @LIBT=$(LIB).$$$$.a && \ $(AR) $(ARFLAGS) $${LIBT} $(OBJ) && \ $(RANLIB) $${LIBT} && \ mv $${LIBT} $(LIB) endif endif runtest: ./runtest ifneq ("$(TARGET)", "sub") ifneq ("$(TARGET)", "libfast") ifneq ("$(TARGET)", "lib") ifneq ("$(TARGET)", "runtest") #################################################################### # Make libbout++.a if it doesn't exist with the checklib target #################################################################### libbout++.a: @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) #################################################################### # Make the target (e.g. gas_compress) #################################################################### # first we remove a trailing slash, if present. Note that currently we # dont support several trailing slashes, as in fuu/bar/// DIRS_=$(DIRS:%/=%) # then we extract the directory name, in case it is a longer path # We are not in a recipe, so # needs to be escaped # $$ is an escaped $ DIRS__=$(shell for d in $(DIRS_) ; do basename $$d;done) # now we can generate a list of libraries SUB_LIBS=$(DIRS__:%=%.a) $(SUB_LIBS):$(DIRS__) $(SOURCEC): checklib $(SOURCEC:%.cxx=%.o): $(LIB) $(TARGET): | $(DIRS) $(TARGET): makefile $(BOUT_CONFIG_FILE) $(OBJ) $(SUB_LIBS) @echo " Linking" $(TARGET) @$(LD) $(LDFLAGS) -o $(TARGET) $(OBJ) $(SUB_LIBS) $(BOUT_LIBS) checklib: ifneq ("$(CHANGED)foo", "foo") @echo "Rebuilding out-of-date bout++ library" @$(MAKE) --no-print-directory -C $(BOUT_TOP) endif endif endif endif endif # Ignore missing requirement files -include .*.mk # If it is a libfast target, track changes to rebuild library if needed # # Further track dependencies using gcc's -M feature: # -MF write the generated dependency rule to a file # -MG assume missing headers will be generated and don't stop with an error # -MM generate dependency rule for prerequisite, skipping system headers # -MP add phony target for each header to prevent errors when header is missing # -MT add a target to the generated dependency # Ignore failure, in case some compiler does not support this %.o: $(BOUT_CONFIG_FILE) %.cxx @echo " Compiling " $(@:.o=.cxx) @$(CXX) $(BOUT_INCLUDE) $(BOUT_FLAGS) -c $(@:.o=.cxx) -o $@ ifeq ("$(TARGET)","libfast") test "$@" = "bout++.o" || touch $(BOUT_TOP)/lib/.last.o.file endif #################################################################### # Clean target. Pretty self explanatory. # NOTE: See that double colon (::) below? That's signifies a rule that can be added to later # See: # http://owen.sj.ca.us/~rk/howto/slides/make/slides/makecolon.html #################################################################### clean:: -@$(RM) -rf $(OBJ) $(DEPS) $(TARGET) @for pp in $(DIRS); do echo " " $$pp cleaned; $(MAKE) --no-print-directory -C $$pp clean; done @$(RM) -f $(SUB_LIBS) -@$(RM) .*.mk @test -f make.config && ( find src | grep '\.o$$' && echo "WARNING: Some object files remain - which might cause issues. Clean with $(MAKE) clean-remove-object-files" ) || exit 0 clean-remove-object-files: find src|grep '\.o$$' | xargs rm distclean:: clean clean-tests @echo include cleaned # Removing the externalpackage installation. When we have more packages, need a better way @$(RM) -rf $(BOUT_TOP)/include/pvode @echo lib cleaned @$(RM) -rf $(BOUT_TOP)/lib/* -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/lib/*.a -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/source/obj/*.o -@$(RM) $(BOUT_TOP)/externalpackages/PVODE/precon/obj/*.o -@$(RM) -rf $(BOUT_TOP)/autom4te.cache make.config @echo externalpackages cleaned @touch $(BOUT_TOP)/configure @echo autom4te.cache cleaned clean-tests: clean-unit-tests clean-integrated-tests clean-mms-tests clean-unit-tests: @echo " tests/unit cleaned" @$(MAKE) --no-print-directory -C tests/unit clean clean-integrated-tests: @echo " tests/integrated cleaned" @$(MAKE) --no-print-directory -C tests/integrated clean clean-mms-tests: @echo " tests/MMS cleaned" @$(MAKE) --no-print-directory -C tests/MMS clean #################################################################### # Documentation #################################################################### MANUAL_DIR=$(BOUT_TOP)/manual doxygen: $(MAKE) -C $(MANUAL_DIR) doxygen breathe-autogen: $(MAKE) -C $(MANUAL_DIR) breathe_autogen sphinx-docs-html: $(MAKE) -C $(MANUAL_DIR) sphinx-html sphinx-docs-latex: $(MAKE) -C $(MANUAL_DIR) sphinx-pdf manual: $(MAKE) -C $(MANUAL_DIR) manual-html: $(MAKE) -C $(MANUAL_DIR) html manual-pdf: $(MAKE) -C $(MANUAL_DIR) pdf python: libfast $(MAKE) -C tools/pylib python3 python2: libfast $(MAKE) -C tools/pylib python2 python-all:python python2 ###################################################################### # Code coverage ###################################################################### GCOV = LCOV = GENHTML = abs_builddir = /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi # Code coverage # # Optional: # - CODE_COVERAGE_DIRECTORY: Top-level directory for code coverage reporting. # Multiple directories may be specified, separated by whitespace. # (Default: $(top_builddir)) # - CODE_COVERAGE_OUTPUT_FILE: Filename and path for the .info file generated # by lcov for code coverage. (Default: # bout-coverage.info) # - CODE_COVERAGE_OUTPUT_DIRECTORY: Directory for generated code coverage # reports to be created. (Default: # bout-coverage) # - CODE_COVERAGE_BRANCH_COVERAGE: Set to 1 to enforce branch coverage, # set to 0 to disable it and leave empty to stay with the default. # (Default: empty) # - CODE_COVERAGE_LCOV_SHOPTS_DEFAULT: Extra options shared between both lcov # instances. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_LCOV_SHOPTS: Extra options to shared between both lcov # instances. (Default: $CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) # - CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH: --gcov-tool pathtogcov # - CODE_COVERAGE_LCOV_OPTIONS_DEFAULT: Extra options to pass to the # collecting lcov instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) # - CODE_COVERAGE_LCOV_OPTIONS: Extra options to pass to the collecting lcov # instance. (Default: $CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) # - CODE_COVERAGE_LCOV_RMOPTS_DEFAULT: Extra options to pass to the filtering # lcov instance. (Default: empty) # - CODE_COVERAGE_LCOV_RMOPTS: Extra options to pass to the filtering lcov # instance. (Default: $CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) # - CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT: Extra options to pass to the # genhtml instance. (Default: based on $CODE_COVERAGE_BRANCH_COVERAGE) # - CODE_COVERAGE_GENHTML_OPTIONS: Extra options to pass to the genhtml # instance. (Default: $CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) # - CODE_COVERAGE_IGNORE_PATTERN: Extra glob pattern of files to ignore # # The generated report will be titled using the $(PACKAGE_NAME) and # $(PACKAGE_VERSION). In order to add the current git hash to the title, # use the git-version-gen script, available online. # Optional variables CODE_COVERAGE_DIRECTORY ?= $(abs_builddir) CODE_COVERAGE_OUTPUT_FILE ?= bout-coverage.info CODE_COVERAGE_OUTPUT_DIRECTORY ?= bout-coverage CODE_COVERAGE_BRANCH_COVERAGE ?= CODE_COVERAGE_LCOV_SHOPTS_DEFAULT ?= $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc lcov_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_LCOV_SHOPTS ?= $(CODE_COVERAGE_LCOV_SHOPTS_DEFAULT) CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH ?= --gcov-tool "$(GCOV)" CODE_COVERAGE_LCOV_OPTIONS_DEFAULT ?= $(CODE_COVERAGE_LCOV_OPTIONS_GCOVPATH) CODE_COVERAGE_LCOV_OPTIONS ?= $(CODE_COVERAGE_LCOV_OPTIONS_DEFAULT) CODE_COVERAGE_LCOV_RMOPTS_DEFAULT ?= CODE_COVERAGE_LCOV_RMOPTS ?= $(CODE_COVERAGE_LCOV_RMOPTS_DEFAULT) CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT ?=\ $(if $(CODE_COVERAGE_BRANCH_COVERAGE),\ --rc genhtml_branch_coverage=$(CODE_COVERAGE_BRANCH_COVERAGE)) CODE_COVERAGE_GENHTML_OPTIONS ?= $(CODE_COVERAGE_GENHTML_OPTIONS_DEFAULT) CODE_COVERAGE_IGNORE_PATTERN ?= "*test*/*" # Use recursive makes in order to ignore errors during check check-code-coverage: @echo "Need to reconfigure with --enable-code-coverage" # Capture code coverage data code-coverage-capture: code-coverage-capture-hook @echo "Need to reconfigure with --enable-code-coverage" # Hook rule executed before code-coverage-capture, overridable by the user code-coverage-capture-hook: GITIGNOREFILES ?= GITIGNOREFILES += $(CODE_COVERAGE_OUTPUT_FILE) $(CODE_COVERAGE_OUTPUT_DIRECTORY) .PHONY: check-code-coverage code-coverage-capture code-coverage-capture-hook code-coverage-clean + make -j2 shared python Compiling field.cxx Compiling nc_format.cxx Compiling ncxx4.cxx In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from field.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from field.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from ncxx4.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ncxx4.hxx:48, from ncxx4.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from ncxx4.hxx:51, from ncxx4.cxx:23: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling field2d.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from field2d.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field2d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from field2d.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pnetcdf.cxx Compiling h5_format.cxx In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from h5_format.cxx:28: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/globals.hxx:30, from h5_format.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field3d.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from field3d.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from field3d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from field3d.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling datafile.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from datafile.cxx:39: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from datafile.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldperp.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from fieldperp.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from fieldperp.cxx:31: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from fieldperp.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_data.cxx Compiling dataformat.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from field_data.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field_data.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from field_data.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from dataformat.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from dataformat.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from dataformat.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling formatfactory.cxx Compiling fieldgroup.cxx In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from formatfactory.cxx:15: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from formatfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from impls/netcdf4/ncxx4.hxx:51, from formatfactory.cxx:8: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ Compiling cyclic.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4, from fieldgroup.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/fieldgroup.hxx:5, from fieldgroup.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field_data.hxx:37, from ../../include/bout/fieldgroup.hxx:4, from fieldgroup.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/field2d.hxx:34, from ../../../../../include/derivs.hxx:32, from cyclic.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from field_factory.cxx:24: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from field_factory.cxx:22: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_parderiv.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from invert_parderiv.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parderiv_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from parderiv_factory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from parderiv_factory.cxx:3: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from parderiv_factory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fieldgenerators.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10, from fieldgenerators.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from fieldgenerators.hxx:11, from fieldgenerators.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from fieldgenerators.hxx:10, from fieldgenerators.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_tri.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_tri.hxx:32, from serial_tri.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_tri.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling initialprofiles.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from initialprofiles.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from initialprofiles.cxx:39: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from initialprofiles.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling serial_band.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from serial_band.hxx:32, from serial_band.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from serial_band.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vecops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from vecops.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from vecops.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from vecops.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pdd.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/lapack_routines.hxx:26, from pdd.cxx:36: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/lapack_routines.hxx:26, from pdd.cxx:36: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../../include/boutexception.hxx:7, from pdd.cxx:33: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling spt.cxx Compiling vector2d.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../../include/bout/mesh.hxx:46, from spt.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from spt.cxx:35: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../../include/bout/mesh.hxx:46, from spt.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/vector2d.hxx:40, from vector2d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector2d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling vector3d.cxx Compiling petsc_laplace.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/vector3d.hxx:37, from vector3d.cxx:33: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from vector3d.cxx:31: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63, from petsc_laplace.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from petsc_laplace.hxx:66, from petsc_laplace.cxx:28: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from petsc_laplace.hxx:63, from petsc_laplace.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling where.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from where.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from where.cxx:26: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from where.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mumps_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from mumps_laplace.hxx:31, from mumps_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling globalfield.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from ../../include/bout/globalfield.hxx:12, from globalfield.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cyclic_laplace.cxx In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from cyclic_laplace.cxx:38: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/dataformat.hxx:40, from ../../../../../include/datafile.hxx:20, from ../../../../../include/globals.hxx:30, from cyclic_laplace.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling generated_fieldops.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from generated_fieldops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from generated_fieldops.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from generated_fieldops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shoot_laplace.cxx In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/field.hxx:41, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../../include/field.hxx:34, from ../../../../../include/fieldperp.hxx:31, from ../../../../../include/invert_laplace.hxx:41, from shoot_laplace.hxx:33, from shoot_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert_laplace.cxx Compiling multigrid_laplace.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from invert_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from invert_laplace.cxx:34: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from invert_laplace.cxx:34: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_laplace.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_laplace.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_laplace.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': invert_laplace.cxx:100:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ^~~~~~~~ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx:100:30: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 100 | Laplacian::setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:770:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 770 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:800:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 800 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': invert_laplace.cxx:831:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 831 | lap->setFlags(flags); | ^ In file included from invert_laplace.cxx:36: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Compiling multigrid_alg.cxx Compiling laplacefactory.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_alg.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_alg.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_alg.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from laplacefactory.hxx:7, from laplacefactory.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from laplacefactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling multigrid_solver.cxx Compiling naulin_laplace.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_solver.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from multigrid_laplace.hxx:38, from multigrid_solver.cxx:30: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from multigrid_laplace.hxx:34, from multigrid_solver.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/bout/scorepwrapper.hxx:5, from ../../../../../include/bout/deriv_store.hxx:37, from ../../../../../include/bout/mesh.hxx:49, from naulin_laplace.cxx:140: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../../include/boutexception.hxx:7, from naulin_laplace.cxx:139: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutmesh.cxx In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from boutmesh.hxx:5, from boutmesh.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/bout/scorepwrapper.hxx:5, from ../../../../include/bout/deriv_store.hxx:37, from ../../../../include/bout/mesh.hxx:49, from boutmesh.hxx:7, from boutmesh.cxx:36: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from boutmesh.hxx:5, from boutmesh.cxx:36: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexy.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:64, from laplacexy.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:218, from /usr/include/openmpi-x86_64/petsc/petscsys.h:40, from /usr/include/openmpi-x86_64/petsc/petscis.h:7, from /usr/include/openmpi-x86_64/petsc/petscvec.h:9, from /usr/include/openmpi-x86_64/petsc/petscmat.h:6, from /usr/include/openmpi-x86_64/petsc/petscpc.h:6, from /usr/include/openmpi-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from ../../../include/bout/invert/laplacexy.hxx:64, from laplacexy.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:218, from /usr/include/openmpi-x86_64/petsc/petscsys.h:40, from /usr/include/openmpi-x86_64/petsc/petscis.h:7, from /usr/include/openmpi-x86_64/petsc/petscvec.h:9, from /usr/include/openmpi-x86_64/petsc/petscmat.h:6, from /usr/include/openmpi-x86_64/petsc/petscpc.h:6, from /usr/include/openmpi-x86_64/petsc/petscksp.h:6, from laplacexy.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-cyclic.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-cyclic.hxx:2, from laplacexz-cyclic.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling shiftedmetric.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from shiftedmetric.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from shiftedmetric.cxx:10: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from shiftedmetric.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz-petsc.cxx In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../include/utils.hxx:38, from ../../../../../include/options.hxx:45, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: ../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../include/multiostream.hxx:4, from ../../../../../include/output.hxx:32, from ../../../../../include/options.hxx:44, from ../../../../../include/bout/invert/laplacexz.hxx:34, from laplacexz-petsc.hxx:12, from laplacexz-petsc.cxx:11: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fci.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/bout/paralleltransform.hxx:10, from fci.hxx:29, from fci.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling laplacexz.cxx Compiling identity.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/invert/laplacexz.hxx:34, from impls/cyclic/laplacexz-cyclic.hxx:2, from laplacexz.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from identity.cxx:9: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from identity.cxx:9: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from identity.cxx:9: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromoptions.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromoptions.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fft_fftw.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from fft_fftw.cxx:29: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from fft_fftw.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gridfromfile.cxx Compiling lapack_routines.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/bout/griddata.hxx:31, from gridfromfile.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from lapack_routines.cxx:41: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from lapack_routines.cxx:38: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling physicsmodel.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from ../../include/bout.hxx:39, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/boutcomm.hxx:33, from ../../include/bout.hxx:39, from ../../include/bout/physicsmodel.hxx:40, from physicsmodel.cxx:32: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bilinear.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from bilinear.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from bilinear.cxx:23: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from bilinear.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling smoothing.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from smoothing.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from smoothing.cxx:35: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from smoothing.cxx:35: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling hermite_spline.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from hermite_spline.cxx:24: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sourcex.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sourcex.cxx:8: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from sourcex.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gyro_average.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from gyro_average.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from gyro_average.cxx:30: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from gyro_average.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling monotonic_hermite_spline.cxx gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': gyro_average.cxx:170:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 170 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': gyro_average.cxx:187:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 187 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': gyro_average.cxx:194:37: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 194 | return gyroPade0(f, DC(rho), flags); | ^ gyro_average.cxx:175:9: note: declared here 175 | Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': gyro_average.cxx:209:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 209 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': gyro_average.cxx:226:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 226 | lap->setFlags(flags); | ^ In file included from ../../include/gyro_average.hxx:36, from gyro_average.cxx:34: ../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': gyro_average.cxx:232:37: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 232 | return gyroPade1(f, DC(rho), flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': gyro_average.cxx:238:34: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 238 | tmp = gyroPade1(tmp, rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': gyro_average.cxx:243:53: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:243:66: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 243 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:197:9: note: declared here 197 | Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': gyro_average.cxx:251:53: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx:251:66: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 251 | Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); | ^ gyro_average.cxx:214:9: note: declared here 214 | Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': gyro_average.cxx:260:37: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] 260 | return gyroPade2(f, DC(rho), flags); | ^ gyro_average.cxx:250:9: note: declared here 250 | Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { | ^~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from monotonic_hermite_spline.cxx:24: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/globals.hxx:30, from monotonic_hermite_spline.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling snb.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field3d.hxx:30, from ../../include/invert_parderiv.hxx:34, from ../../include/bout/snb.hxx:1, from snb.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling lagrange_4pt.cxx Compiling arkode.cxx In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from lagrange_4pt.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/bout/scorepwrapper.hxx:5, from ../../../include/bout/deriv_store.hxx:37, from ../../../include/bout/mesh.hxx:49, from lagrange_4pt.cxx:23: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/bout/mesh.hxx:46, from lagrange_4pt.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from arkode.hxx:35, from arkode.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from arkode.hxx:35, from arkode.cxx:28: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from arkode.hxx:35, from arkode.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation_factory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/interpolation.hxx:31, from ../../../include/interpolation_factory.hxx:4, from interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling pvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from pvode.hxx:34, from pvode.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from pvode.hxx:34, from pvode.cxx:26: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from pvode.hxx:34, from pvode.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling difops.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from difops.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from difops.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cvode.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from cvode.hxx:34, from cvode.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from cvode.hxx:34, from cvode.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from cvode.hxx:34, from cvode.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling interpolation.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from interpolation.cxx:27: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from interpolation.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling ida.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from ida.hxx:35, from ida.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from ida.hxx:35, from ida.cxx:30: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from ida.hxx:35, from ida.cxx:30: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from mesh.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling petsc.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:218, from /usr/include/openmpi-x86_64/petsc/petscsys.h:40, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field2d.hxx:34, from petsc.hxx:36, from petsc.cxx:27: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from /usr/include/openmpi-x86_64/petsc/petscsystypes.h:218, from /usr/include/openmpi-x86_64/petsc/petscsys.h:40, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ petsc.cxx: In function 'PetscErrorCode PetscMonitor(TS, PetscInt, PetscReal, Vec, void*)': petsc.cxx:859:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 859 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~ In file included from /usr/include/openmpi-x86_64/petsc/petscsys.h:1362, from /usr/include/openmpi-x86_64/petsc/petscbag.h:4, from /usr/include/openmpi-x86_64/petsc/petsc.h:5, from petsc.hxx:34, from petsc.cxx:27: /usr/include/openmpi-x86_64/petsc/petscerror.h:464:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 464 | #define CHKERRQ(ierr) do {PetscErrorCode ierr__ = (ierr); if (PetscUnlikely(ierr__)) return PetscError(PETSC_COMM_SELF,__LINE__,PETSC_FUNCTION_NAME,__FILE__,ierr__,PETSC_ERROR_REPEAT," ");} while (0) | ^~ petsc.cxx:859:79: note: in expansion of macro 'CHKERRQ' 859 | if (s->interpolate) ierr = TSInterpolate(ts,s->next_output,interpolatedX);CHKERRQ(ierr); | ^~~~~~~ Compiling snes.cxx Compiling boundary_standard.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from snes.hxx:35, from snes.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from snes.hxx:38, from snes.cxx:4: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from snes.hxx:35, from snes.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from boundary_standard.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_standard.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from boundary_standard.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling imex-bdf2.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from imex-bdf2.hxx:42, from imex-bdf2.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from imex-bdf2.hxx:45, from imex-bdf2.cxx:4: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from imex-bdf2.hxx:42, from imex-bdf2.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from boundary_factory.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling power.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from power.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from power.hxx:33, from power.cxx:3: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from power.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boundary_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from boundary_region.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from boundary_region.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from boundary_region.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling slepc.cxx Compiling karniadakis.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from karniadakis.hxx:38, from karniadakis.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from karniadakis.hxx:41, from karniadakis.cxx:39: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from karniadakis.hxx:38, from karniadakis.cxx:39: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling meshfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from meshfactory.hxx:7, from meshfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from meshfactory.hxx:7, from meshfactory.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from meshfactory.hxx:7, from meshfactory.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4.cxx Compiling surfaceiter.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rk4.hxx:33, from rk4.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk4.hxx:36, from rk4.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rk4.hxx:33, from rk4.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from ../../include/bout/surfaceiter.hxx:10, from surfaceiter.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from coordinates.cxx:9: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/bout/../boutexception.hxx:7, from ../../include/bout/assert.hxx:20, from coordinates.cxx:7: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling euler.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from euler.hxx:33, from euler.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from euler.hxx:36, from euler.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from euler.hxx:33, from euler.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk3-ssp.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rk3-ssp.hxx:39, from rk3-ssp.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rk3-ssp.hxx:42, from rk3-ssp.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rk3-ssp.hxx:39, from rk3-ssp.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf45.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf45.hxx:7, from rkf45.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling index_derivs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../../include/bout/index_derivs.hxx:33, from index_derivs.cxx:24: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/index_derivs.hxx:37, from index_derivs.cxx:24: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from ../../include/bout/index_derivs.hxx:33, from index_derivs.cxx:24: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling cashkarp.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from cashkarp.hxx:7, from cashkarp.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rk4simple.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rk4simple.hxx:7, from rk4simple.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkf34.cxx In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../../../include/utils.hxx:38, from ../../../../../../include/options.hxx:45, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: ../../../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../../../include/multiostream.hxx:4, from ../../../../../../include/output.hxx:32, from ../../../../../../include/options.hxx:44, from ../../../../../../include/bout/rkscheme.hxx:39, from rkf34.hxx:7, from rkf34.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkgeneric.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rkgeneric.hxx:31, from rkgeneric.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from rkgeneric.hxx:34, from rkgeneric.cxx:2: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from rkgeneric.hxx:31, from rkgeneric.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkscheme.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkscheme.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling rkschemefactory.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../../include/multiostream.hxx:4, from ../../../../include/output.hxx:32, from ../../../../include/options.hxx:44, from ../../../../include/bout/rkscheme.hxx:39, from rkschemefactory.hxx:7, from rkschemefactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling split-rk.cxx In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from split-rk.hxx:36, from split-rk.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/utils.hxx:38, from ../../../../include/options.hxx:45, from ../../../../include/bout/solver.hxx:42, from split-rk.hxx:36, from split-rk.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../../../include/boutexception.hxx:7, from ../../../../include/bout/solver.hxx:40, from split-rk.hxx:36, from split-rk.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40, from solver.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver.cxx:23: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/solver.hxx:40, from solver.cxx:23: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solverfactory.cxx In file included from impls/pvode/pvode.hxx:37, from solverfactory.cxx:11: ../../include/pvode/nvector.h:93: warning: "PVEC_REAL_MPI_TYPE" redefined 93 | #define PVEC_REAL_MPI_TYPE MPI_DOUBLE | In file included from /usr/include/openmpi-x86_64/nvector/nvector_parallel.h:44, from impls/arkode/arkode.hxx:47, from solverfactory.cxx:3: /usr/include/openmpi-x86_64/sundials/sundials_mpi_types.h:38: note: this is the location of the previous definition 38 | #define PVEC_REAL_MPI_TYPE MPI_SUNREALTYPE | Compiling parallel_boundary_region.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7, from solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from ../../include/bout/solverfactory.hxx:8, from solverfactory.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from ../../include/bout/generic_factory.hxx:7, from ../../include/bout/solverfactory.hxx:7, from solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling parallel_boundary_op.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from parallel_boundary_op.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from parallel_boundary_op.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../include/bout/mesh.hxx:46, from parallel_boundary_op.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling fv_ops.cxx In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/bout/../msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8, from fv_ops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/../field.hxx:41, from ../../include/bout/../field3d.hxx:30, from ../../include/bout/fv_ops.hxx:9, from fv_ops.cxx:2: ../../include/bout/../msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/bout/../dataformat.hxx:40, from ../../include/bout/../datafile.hxx:20, from ../../include/bout/../globals.hxx:30, from ../../include/bout/fv_ops.hxx:8, from fv_ops.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_ini.cxx In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33, from options_ini.cxx:52: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from options_ini.cxx:52: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../../include/dcomplex.hxx:35, from ../../../include/utils.hxx:33, from options_ini.cxx:52: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options_netcdf.cxx In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/utils.hxx:38, from ../../../include/options.hxx:45, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../../include/multiostream.hxx:4, from ../../../include/output.hxx:32, from ../../../include/options.hxx:44, from ../../../include/options_netcdf.hxx:44, from options_netcdf.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout_types.cxx In file included from /usr/include/openmpi-x86_64/ncFile.h:2, from /usr/include/openmpi-x86_64/netcdf:16, from options_netcdf.cxx:7: /usr/include/openmpi-x86_64/ncGroup.h: At global scope: /usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable] 18 | static int file_id; | ^~~~~~~ In file included from bout_types.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from bout_types.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from bout_types.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling boutexception.cxx In file included from boutexception.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from boutexception.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling derivs.cxx Compiling msg_stack.cxx In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/msg_stack.hxx:35, from msg_stack.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from msg_stack.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/msg_stack.hxx:35, from msg_stack.cxx:28: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/derivs.hxx:32, from derivs.cxx:42: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/dataformat.hxx:40, from ../../include/datafile.hxx:20, from ../../include/globals.hxx:30, from derivs.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/field_factory.hxx:32, from options.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/boutexception.hxx:7, from options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling output.cxx Compiling utils.cxx In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from output.cxx:30: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from output.cxx:29: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33, from utils.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from utils.cxx:26: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/istream:38, from /usr/include/c++/11/sstream:38, from /usr/include/c++/11/complex:45, from ../../include/dcomplex.hxx:35, from ../../include/utils.hxx:33, from utils.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling optionsreader.cxx Compiling boutcomm.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/stdexcept:38, from /usr/include/c++/11/system_error:41, from /usr/include/c++/11/bits/ios_base.h:46, from /usr/include/c++/11/streambuf:41, from ../../include/multiostream.hxx:4, from ../../include/output.hxx:32, from ../../include/options.hxx:44, from ../../include/optionsreader.hxx:37, from optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling timer.cxx Compiling range.cxx Compiling petsclib.cxx Compiling expressionparser.cxx Compiling slepclib.cxx Compiling type_name.cxx In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from expressionparser.cxx:28: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from ../../include/bout/sys/expressionparser.hxx:33, from expressionparser.cxx:25: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field2d.hxx:34, from type_name.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from type_name.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../include/field.hxx:34, from ../../include/field2d.hxx:34, from type_name.cxx:3: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling bout++.cxx In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../include/field.hxx:34, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../include/field.hxx:41, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: ../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../include/field.hxx:34, from ../include/field2d.hxx:34, from ../include/boundary_op.hxx:9, from ../include/boundary_factory.hxx:7, from bout++.cxx:41: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Recreating libbout++.a make -C tools/pylib python3 Creating libbout++.so make[1]: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib' PY=python3 make -C _boutcore_build pseudoinstall make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/_boutcore_build' Generating boutcore.pyx Generating setup.py Generating helper.cxx Generating helper.h Generating resolve_enum.pxd yes - deflt yes - centre yes - xlow yes - ylow yes - zlow yes - vshift yes - deflt yes - u1 yes - u2 yes - c2 yes - w2 yes - w3 yes - c4 yes - u3 yes - fft yes - split yes - s2 yes - all yes - nobndry yes - nox yes - noy yes - noz yes - X yes - Y yes - Z yes - YAligned yes - YOrthogonal yes - Standard yes - Aligned yes - Standard yes - Average yes - C2L yes - L2C yes - Standard yes - StandardSecond yes - StandardFourth yes - Upwind yes - Flux yes - standard yes - simple yes - arakawa yes - ctu yes - arakawa_old Generating boutcpp.pxd /usr/lib64/python3.9/distutils/extension.py:131: UserWarning: Unknown Extension options: 'language_level' warnings.warn(msg) /usr/lib64/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/_boutcore_build/boutcore.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: resolve_enum.pxd:49:25: 'deflt' redeclared warning: resolve_enum.pxd:189:28: 'Standard' redeclared warning: resolve_enum.pxd:223:19: 'Standard' redeclared Compiling boutcore.pyx because it changed. [1/1] Cythonizing boutcore.pyx running build_ext building 'boutcore' extension creating build creating build/temp.linux-x86_64-3.9 mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.9 -c boutcore.cpp -o build/temp.linux-x86_64-3.9/boutcore.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1944, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4, from boutcore.cpp:902: /usr/lib64/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from boutcore.cpp:883: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx:147:15: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from boutcore.cpp:876: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from boutcore.cpp:883: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx:147:34: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from boutcore.cpp:876: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_6DDX(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:37690:96: warning: ‘Field3D DDX(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 37690 | __pyx_t_6 = DDX((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:95:34: note: declared here 95 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDX, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_8D2DX2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:37980:98: warning: ‘Field3D D2DX2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 37980 | __pyx_t_6 = D2DX2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:225:34: note: declared here 225 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DX2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_10VDDX(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38282:126: warning: ‘Field3D VDDX(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38282 | __pyx_t_6 = VDDX((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:420:35: note: declared here 420 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDX, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_12FDDX(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38584:126: warning: ‘Field3D FDDX(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38584 | __pyx_t_6 = FDDX((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:539:35: note: declared here 539 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDX, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_14DDY(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:38874:96: warning: ‘Field3D DDY(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 38874 | __pyx_t_6 = DDY((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:127:34: note: declared here 127 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDY, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_16D2DY2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39164:98: warning: ‘Field3D D2DY2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39164 | __pyx_t_6 = D2DY2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:257:34: note: declared here 257 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DY2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_18VDDY(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39466:126: warning: ‘Field3D VDDY(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39466 | __pyx_t_6 = VDDY((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:454:35: note: declared here 454 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDY, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_20FDDY(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:39768:126: warning: ‘Field3D FDDY(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 39768 | __pyx_t_6 = FDDY((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:573:35: note: declared here 573 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDY, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_22DDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40058:96: warning: ‘Field3D DDZ(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40058 | __pyx_t_6 = DDZ((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:159:34: note: declared here 159 | DERIV_FUNC_REGION_ENUM_TO_STRING(DDZ, Field3D) | ^~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_24D2DZ2(PyObject*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40348:98: warning: ‘Field3D D2DZ2(const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40348 | __pyx_t_6 = D2DZ2((__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:289:34: note: declared here 289 | DERIV_FUNC_REGION_ENUM_TO_STRING(D2DZ2, Field3D) | ^~~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:46:10: note: in definition of macro ‘DERIV_FUNC_REGION_ENUM_TO_STRING’ 46 | inline T func(const T& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_26VDDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40650:126: warning: ‘Field3D VDDZ(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40650 | __pyx_t_6 = VDDZ((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:488:35: note: declared here 488 | VDERIV_FUNC_REGION_ENUM_TO_STRING(VDDZ, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: In function ‘PyObject* __pyx_pf_8boutcore_28FDDZ(PyObject*, __pyx_obj_8boutcore_Field3D*, __pyx_obj_8boutcore_Field3D*, PyObject*, PyObject*, PyObject*)’: boutcore.cpp:40952:126: warning: ‘Field3D FDDZ(const Field3D&, const Field3D&, CELL_LOC, const string&, REGION)’ is deprecated: Please use #func(const #T1 v, const #T2& f, CELL_LOC outloc = CELL_DEFAULT, const std::string& method = "DEFAULT", const std::string& region = "RGN_ALL") instead [-Wdeprecated-declarations] 40952 | __pyx_t_6 = FDDZ((__pyx_v_velocity->cobj[0]), (__pyx_v_field->cobj[0]), __pyx_v_outloc_, __pyx_v_method_, __pyx_v_region_); | ^ In file included from boutcore.cpp:894: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:607:35: note: declared here 607 | VDERIV_FUNC_REGION_ENUM_TO_STRING(FDDZ, Field3D, Field3D, Field3D) | ^~~~ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx:66:10: note: in definition of macro ‘VDERIV_FUNC_REGION_ENUM_TO_STRING’ 66 | inline T func(const T1& v, const T2& f, CELL_LOC outloc, const std::string& method, \ | ^~~~ boutcore.cpp: At global scope: boutcore.cpp:25004:45: warning: ‘__pyx_obj_8boutcore_Vector2D* __pyx_f_8boutcore_v2dFromObj(Vector2D)’ defined but not used [-Wunused-function] 25004 | static struct __pyx_obj_8boutcore_Vector2D *__pyx_f_8boutcore_v2dFromObj(Vector2D __pyx_v_i) { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_cell_loc(_object*)’: boutcore.cpp:49221:10: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 49221 | return __pyx_r; | ^~~~~~~ boutcore.cpp: In function ‘__pyx_f_12resolve_enum_resolve_region(_object*)’: boutcore.cpp:50045:10: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 50045 | return __pyx_r; | ^~~~~~~ boutcore.cpp: In function ‘__pyx_pw_8boutcore_45bracket(_object*, _object*, _object*)’: boutcore.cpp:42619:141: warning: ‘__pyx_r’ may be used uninitialized in this function [-Wmaybe-uninitialized] 42619 | __pyx_t_1 = ((PyObject *)__pyx_f_8boutcore_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2569, __pyx_L1_error) | ^ boutcore.cpp:50732:18: note: ‘__pyx_r’ was declared here 50732 | BRACKET_METHOD __pyx_r; | ^~~~~~~ mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.9 -c boutexception_helper.cxx -o build/temp.linux-x86_64-3.9/boutexception_helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale mpic++ -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib64/python3.9/site-packages/numpy/core/include -I/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include -I/usr/include -I/usr/include -I/usr/include/openmpi-x86_64/petsc -I. -I/usr/include/python3.9 -c helper.cxx -o build/temp.linux-x86_64-3.9/helper.o -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -DBOUT_FLAGS_STRING=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -DHAS_PRETTY_FUNCTION -Wextra -Wnull-dereference -Wno-cast-function-type -DCHECK=2 -DSIGHANDLE -DLOGCOLOR -DBOUT_VERSION_STRING=4.3.2 -DBOUT_VERSION_DOUBLE=4.32 -DBACKTRACE -fPIC -DBOUT_HAS_FFTW -DNCDF4 -DHDF5 -DBOUT_HAS_PETSC -DBOUT_HAS_IDA -DBOUT_HAS_CVODE -DBOUT_HAS_ARKODE -DBOUT_HAS_PVODE -DBOUT_HAS_GETTEXT -DBOUT_LOCALE_PATH=/usr/share/locale In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx: In destructor ‘MsgStackItem::~MsgStackItem()’: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx:147:15: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:34, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:41, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx:147:34: warning: ‘bool std::uncaught_exception()’ is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx:34, from /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx:30, from helper.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ mpic++ -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.9/boutcore.o build/temp.linux-x86_64-3.9/boutexception_helper.o build/temp.linux-x86_64-3.9/helper.o -L/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib -L/usr/lib64 -L/usr/lib64 -L/usr/lib64/openmpi/lib -L/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib -L/usr/lib64 -lm -lbout++ -ldl -lm -lfftw3 -lnetcdf_c++4 -lnetcdf -lhdf5_hl -lhdf5 -lhdf5_hl -lsz -lz -ldl -lm -lpetsc -lsundials_ida -lsundials_nvecparallel -lsundials_cvode -lsundials_nvecparallel -lsundials_arkode -lsundials_nvecparallel -lpvode -lpvpre -o /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/_boutcore_build/boutcore.cpython-39-x86_64-linux-gnu.so -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld cp boutcore*.so .. make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/_boutcore_build' make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib' ++ pwd + export LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib + LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib + make -j2 -C manual html make: Entering directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual' cd doxygen && doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1056 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2149 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2171 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.1 Notice: Output directory 'bout' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... 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Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/monitor.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/openmpwrap.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/openmpwrap.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/petsclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/petsclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/physicsmodel.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/physicsmodel.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rkscheme.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rkscheme.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rvec.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rvec.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/scorepwrapper.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/scorepwrapper.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/slepclib.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/slepclib.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/snb.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/snb.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solver.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solver.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solverfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solverfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/surfaceiter.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/surfaceiter.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/expressionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/expressionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/gettext.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/gettext.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/range.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/range.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/timer.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/timer.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/type_name.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/type_name.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/uncopyable.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/uncopyable.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/template_combinations.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/template_combinations.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/traits.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/traits.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout_types.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout_types.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutcomm.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutcomm.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutexception.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutexception.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutmain.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutmain.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/cyclic_reduction.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/cyclic_reduction.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/datafile.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/datafile.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dcomplex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dcomplex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/derivs.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/fft.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/fft.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field2d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field2d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field3d.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field_data.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field_data.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/fieldperp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/fieldperp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/globals.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/globals.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/initialprofiles.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/initialprofiles.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/interpolation.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/interpolation.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/interpolation_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/interpolation_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_parderiv.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_parderiv.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/lapack_routines.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/lapack_routines.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/mask.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/mask.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/msg_stack.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/multiostream.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/multiostream.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options_netcdf.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options_netcdf.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/optionsreader.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/optionsreader.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/output.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/output.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/parallel_boundary_op.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/parallel_boundary_op.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/parallel_boundary_region.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/parallel_boundary_region.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/band.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/band.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvdiag.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvdiag.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvode.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvode.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvspgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/cvspgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/iterativ.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/iterativ.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/llnlmath.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/llnlmath.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/llnltyps.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/llnltyps.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/nvector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/nvector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/pvbbdpre.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/pvbbdpre.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/smalldense.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/smalldense.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/spgmr.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/spgmr.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/vector.h... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/pvode/vector.h... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/smoothing.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/smoothing.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/sourcex.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/sourcex.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/stencils.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/stencils.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/unused.hxx... 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Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/bout++.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/bout++.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field_data.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field_data.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/field_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgenerators.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgenerators.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgenerators.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgenerators.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgroup.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldgroup.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldperp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/fieldperp.cxx... Reading /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/gen_fieldops.py... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/gen_fieldops.py... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/generated_fieldops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/generated_fieldops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/globalfield.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/globalfield.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/initialprofiles.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/initialprofiles.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vecops.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vecops.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vector2d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vector2d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vector3d.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/vector3d.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/where.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/field/where.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/datafile.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/datafile.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/dataformat.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/dataformat.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/formatfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/formatfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/formatfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/formatfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/emptyformat.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx... 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Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/cyclic/cyclic_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_alg.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/multigrid/multigrid_solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/mumps/mumps_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/naulin/naulin_laplace.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/pdd/pdd.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx... 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Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_standard.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_standard.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/data/gridfromfile.cxx... 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Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/meshfactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/meshfactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/identity.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/identity.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/surfaceiter.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/surfaceiter.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/physicsmodel.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/physicsmodel.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/smoothing.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/smoothing.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/snb.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/snb.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/sourcex.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/sourcex.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/euler/euler.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/euler/euler.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/euler/euler.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/euler/euler.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/ida/ida.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/ida/ida.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/ida/ida.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/ida/ida.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/imex-bdf2/imex-bdf2.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/karniadakis/karniadakis.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk4/rk4.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk4/rk4.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/slepc/slepc.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/slepc/slepc.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/snes/snes.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/snes/snes.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/snes/snes.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/snes/snes.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/split-rk/split-rk.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/split-rk/split-rk.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/solver.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/solver.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/solverfactory.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/solverfactory.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/bout_types.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/bout_types.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutcomm.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutcomm.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutexception.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutexception.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/derivs.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/derivs.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/expressionparser.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/expressionparser.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/msg_stack.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/msg_stack.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/optionparser.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/optionparser.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.hxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.hxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_netcdf.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_netcdf.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/optionsreader.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/optionsreader.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/output.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/output.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/petsclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/petsclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/range.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2//builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/generic_factory.hxx:1: warning: the name 'Base' supplied as the argument in the \file statement is not an input file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:347: warning: no uniquely matching class member found for const vector< int > NcFormat::getSize(const string &var) Possible candidates: 'const std::vector< int > NcFormat::getSize(const char *var) override' at line 77 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'const std::vector< int > NcFormat::getSize(const std::string &var) override' at line 78 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:558: warning: no uniquely matching class member found for bool NcFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:599: warning: no uniquely matching class member found for bool NcFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 100 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:677: warning: no uniquely matching class member found for bool NcFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:739: warning: no uniquely matching class member found for bool NcFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 105 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 106 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:841: warning: no uniquely matching class member found for bool NcFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:882: warning: no uniquely matching class member found for bool NcFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 111 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 112 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 113 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 114 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:964: warning: no uniquely matching class member found for bool NcFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.cxx:1039: warning: no uniquely matching class member found for bool NcFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool NcFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 117 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 118 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 119 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx 'bool NcFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 120 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:295: warning: no uniquely matching class member found for bool PncFormat::read(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:354: warning: no uniquely matching class member found for bool PncFormat::read(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 84 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 85 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 86 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 87 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:402: warning: no uniquely matching class member found for bool PncFormat::write(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:488: warning: no uniquely matching class member found for bool PncFormat::write(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 89 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 90 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 91 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 92 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:524: warning: no uniquely matching class member found for bool PncFormat::read_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:556: warning: no uniquely matching class member found for bool PncFormat::read_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::read_rec(int *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 96 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(int *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 97 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const char *name, int lx=1, int ly=0, int lz=0) override' at line 98 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::read_rec(BoutReal *var, const std::string &name, int lx=1, int ly=0, int lz=0) override' at line 99 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:605: warning: no uniquely matching class member found for bool PncFormat::write_rec(int *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.cxx:681: warning: no uniquely matching class member found for bool PncFormat::write_rec(double *var, const string &name, int lx, int ly, int lz) Possible candidates: 'bool PncFormat::write_rec(int *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(int *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const char *name, int lx=0, int ly=0, int lz=0) override' at line 103 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx 'bool PncFormat::write_rec(BoutReal *var, const std::string &name, int lx=0, int ly=0, int lz=0) override' at line 104 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/pnetcdf/pnetcdf.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx:80: warning: no uniquely matching class member found for BoundaryOpBase * BoundaryFactory::create(const string &name, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::create(const std::string &name, BoundaryRegionBase *region)' at line 70 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'BoundaryOpBase * BoundaryFactory::create(const char *name, BoundaryRegionBase *region)' at line 71 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx:210: warning: no matching class member found for BoundaryOpBase * BoundaryFactory::createFromOptions(const string &varname, BoundaryRegionBase *region) Possible candidates: 'BoundaryOpBase * BoundaryFactory::createFromOptions(const std::string &varname, BoundaryRegionBase *region)' 'BoundaryOpBase * BoundaryFactory::createFromOptions(const char *varname, BoundaryRegionBase *region)' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx:313: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOp *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx:326: warning: no uniquely matching class member found for void BoundaryFactory::add(BoundaryOpPar *bop, const string &name) Possible candidates: 'void BoundaryFactory::add(BoundaryOp *bop, const std::string &name)' at line 81 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOp *bop, const char *name)' at line 88 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const std::string &name)' at line 101 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx 'void BoundaryFactory::add(BoundaryOpPar *bop, const char *name)' at line 102 of file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx:339: warning: no matching class member found for void BoundaryFactory::addMod(BoundaryModifier *bmod, const string &name) Possible candidates: 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const std::string &name)' 'void BoundaryFactory::addMod(BoundaryModifier *bmod, const char *name)' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx:1229: warning: no matching class member found for Field2D Coordinates::DDZ(const MAYBE_UNUSED(Field2D &f), CELL_LOC loc, const std::string &method, const std::string ®ion) Possible candidates: 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY")' 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, const std::string &method, REGION region)' 'Field2D Coordinates::DDZ(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method, REGION region=RGN_NOBNDRY)' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx:1244: warning: no matching class member found for Field2D Coordinates::Grad_par(const Field2D &var, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Grad_par(const Field2D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field2D Coordinates::Grad_par(const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' 'Field3D Coordinates::Grad_par(const Field3D &var, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field3D Coordinates::Grad_par(const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx:1265: warning: no matching class member found for Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, MAYBE_UNUSED(CELL_LOC outloc), const std::string &method) Possible candidates: 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field2D Coordinates::Vpar_Grad_par(const Field2D &v, const Field2D &f, CELL_LOC outloc, DIFF_METHOD method)' 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT")' 'Field3D Coordinates::Vpar_Grad_par(const Field3D &v, const Field3D &f, CELL_LOC outloc, DIFF_METHOD method)' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/index_derivs.cxx:59: warning: no matching class member found for STAGGER Mesh::getStagger(CELL_LOC vloc, MAYBE_UNUSED(CELL_LOC inloc), const CELL_LOC outloc, const CELL_LOC allowedStaggerLoc) const Possible candidates: 'STAGGER Mesh::getStagger(const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' 'STAGGER Mesh::getStagger(const CELL_LOC vloc, const CELL_LOC inloc, const CELL_LOC outloc, const CELL_LOC allowedloc) const' sh: line 1: latex: command not found error: Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! build_openmpi/src/sys/range.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/slepclib.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/slepclib.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/timer.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/timer.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/type_name.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/type_name.cxx... Preprocessing /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/utils.cxx... Parsing file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/utils.cxx... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Computing nesting relations for classes... Associating documentation with classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating example documentation... Generating file sources... Generating file documentation... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_op.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boundary_standard.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/array.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/assert.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/constants.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/coordinates.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/deprecated.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/deriv_store.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/expr.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/field_visitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/fieldgroup.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/format.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/fv_ops.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/generic_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/globalfield.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/griddata.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs_interface.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/invert/laplacexy.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/invert/laplacexz.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/invertable_operator.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/macro_for_each.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/mesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/monitor.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/openmpwrap.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/petsclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/physicsmodel.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/region.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rkscheme.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/rvec.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/scorepwrapper.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/slepclib.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/snb.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solver.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/solverfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/surfaceiter.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/expressionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/gettext.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/range.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/timer.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/type_name.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/uncopyable.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/template_combinations.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/traits.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout_types.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutcomm.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/boutexception.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx:299: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx:208: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:61: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:91: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:131: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' .2/build_openmpi/include/boutmain.hxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/shoot/shoot_laplace.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/spt/spt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/spt/spt.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/invert_laplace.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/laplacefactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexy/laplacexy.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/difops.cxx:287: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/difops.cxx:274: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:78: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:119: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:149: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplacexz/laplacexz.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/impls/cyclic/cyclic.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/invert_parderiv.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/parderiv/parderiv_factory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/boundary_standard.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/coordinates.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/data/gridfromfile.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/data/gridfromoptions.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/difops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/fv_ops.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/impls/bout/boutmesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/impls/bout/boutmesh.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/index_derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation/bilinear.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation/hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation/interpolation_factory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation/lagrange_4pt.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/interpolation/monotonic_hermite_spline.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/mesh.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/meshfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/meshfactory.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/fci.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/identity.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel/shiftedmetric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_op.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/parallel_boundary_region.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/surfaceiter.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/physicsmodel.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/smoothing.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/snb.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/sourcex.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/arkode/arkode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/cvode/cvode.hxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/petsc/petsc.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/power/power.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/pvode/pvode.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rk3-ssp/rk3-ssp.hxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkgeneric.hxx... Generating docs for file /builddir/build/BUILD/BOUT/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found ++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkscheme.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/rkgeneric/rkschemefactory.cxx... 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Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/solverfactory.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/bout_types.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutcomm.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/boutexception.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/derivs.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/expressionparser.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/msg_stack.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/optionparser.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_ini.hxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/options/options_netcdf.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/optionsreader.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/output.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/petsclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/range.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/slepclib.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/timer.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/type_name.cxx... Generating docs for file /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/utils.cxx... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Add... Generating docs for compound ArkodeSolver... Generating docs for compound Array... Generating docs for compound ArrayData... Generating docs for compound asExpr... Generating docs for compound asExpr< double >... Generating docs for compound asExpr< Field3D >... Generating docs for compound asExpr< float >... Generating docs for compound asExpr< int >... Generating docs for compound Bilinear... Generating docs for compound BinaryExpr... Generating docs for compound BinaryResult... Generating docs for compound BoundaryConstGradient... Generating docs for compound BoundaryConstLaplace... Generating docs for compound BoundaryDirichlet... Generating docs for compound BoundaryDirichlet_2ndOrder... Generating docs for compound BoundaryDirichlet_4thOrder... Generating docs for compound BoundaryDirichlet_O3... Generating/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:207: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:191: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:175: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/generic_factory.hxx:57: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field2d.hxx:67: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' docs for compound BoundaryDirichlet_O4... Generating docs for compound BoundaryDivCurl... Generating docs for compound BoundaryFactory... Generating docs for compound BoundaryFree... Generating docs for compound BoundaryFree_O2... Generating docs for compound BoundaryFree_O3... Generating docs for compound BoundaryFromFieldAligned... Generating docs for compound BoundaryModifier... Generating docs for compound BoundaryNeumann... Generating docs for compound BoundaryNeumann2... Generating docs for compound BoundaryNeumann_2ndOrder... Generating docs for compound BoundaryNeumann_4thOrder... Generating docs for compound BoundaryNeumann_NonOrthogonal... Generating docs for compound BoundaryNeumann_O4... Generating docs for compound BoundaryNeumannPar... Generating docs for compound BoundaryOp... Generating docs for compound BoundaryOpBase... Generating docs for compound BoundaryOpPar... Generating docs for compound BoundaryOpPar_dirichlet... Generating docs for compound BoundaryOpPar_dirichlet_interp... Generating docs for compound BoundaryOpPar_dirichlet_O3... Generating docs for compound BoundaryOpPar_neumann... Generating docs for compound BoundaryRegion... Generating docs for compound BoundaryRegionBase... Generating docs for compound BoundaryRegionPar... Generating docs for nested compound BoundaryRegionPar::IndexPoint... Generating docs for nested compound BoundaryRegionPar::Indices... Generating docs for nested compound BoundaryRegionPar::RealPoint... Generating docs for compound BoundaryRegionXIn... Generating docs for compound BoundaryRegionXOut... Generating docs for compound BoundaryRegionYDown... Generating docs for compound BoundaryRegionYUp... Generating docs for compound BoundaryRelax... Generating docs for compound BoundaryRobin... Generating docs for compound BoundaryToFieldAligned... Generating docs for compound BoundaryWidth... Generating docs for compound BoundaryZeroLaplace... Generating docs for compound BoundaryZeroLaplace2... Generating docs for compound BoutComm... Generating docs for compound BoutException... Generating docs for compound BoutIterationFail... Generating docs for compound BoutMask... Generating docs for compound BoutMesh... Generating docs for nested compound BoutMesh::CommHandle... Generating docs for compound BoutMonitor... Generating docs for compound BoutRhsFail... Generating docs for compound CASHKARPScheme... Generating docs for compound ConditionalOutput... Generating docs for compound Coordinates... Generating docs for compound CvodeSolver... Generating docs for compound CyclicReduce... Generating docs for compound Datafile... Generating docs for nested compound Datafile::VarStr... Generating docs for compound DataFormat... Generating docs for compound DeferredFunction... Generating docs for compound DerivativeStore... Generating docs for compound DerivativeType... Generating docs for compound DirectionTypes... Generating docs for compound Divide... Generating docs for compound DummyOutput... Generating docs for compound EmptyFormat... Generating docs for compound enumWrapper... Generating docs for compound EulerSolver... Generating docs for compound ExpressionParser... Generating docs for nested compound ExpressionParser::LexInfo... Generating docs for compound exprTraits... Generating docs for compound exprTraits< double >... Generating docs for compound exprTraits< float >... Generating docs for compound exprTraits< int >... Generating docs for compound Factory... Generating docs for compound FCIMap... Generating docs for compound FCITransform... Generating docs for compound fcmplx... Generating docs for compound Field... Generating docs for compound Field2D... Generating docs for compound Field2DExpr... Generating docs for compound Field3D... Generating docs for compound Field3DExpr... Generating docs for compound FieldAbs... Generating docs for compound FieldATan... Generating docs for compound FieldBallooning... Generating docs for compound FieldBinary... Generating docs for compound FieldCos... Generating docs for compound FieldCosh... Generating docs for compound Fiel/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/griddata.hxx:217: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/griddata.hxx:191: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:131: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:130: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:129: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:185: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:212: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/mesh.hxx:730: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/mesh.hxx:748: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:135: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:134: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:133: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:136: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:135: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:134: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:160: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:160: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:164: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' dData... Generating docs for compound FieldErf... Generating docs for compound FieldFactory... Generating docs for compound FieldFunction... Generating docs for compound FieldGaussian... Generating docs for compound FieldGenerator... Generating docs for compound FieldGenOneArg... Generating docs for compound FieldGenTwoArg... Generating docs for compound FieldGroup... Generating docs for compound FieldHeaviside... Generating docs for compound FieldMax... Generating docs for compound FieldMin... Generating docs for compound FieldMixmode... Generating docs for compound FieldNull... Generating docs for compound FieldPerp... Generating docs for compound FieldRound... Generating docs for compound FieldSin... Generating docs for compound FieldSinh... Generating docs for compound FieldSqrt... Generating docs for compound FieldTanh... Generating docs for compound FieldTanhHat... Generating docs for compound FieldValue... Generating docs for compound FieldValuePtr... Generating docs for compound FieldVisitor... Generating docs for compound FormatFactory... Generating docs for compound GlobalField... Generating docs for compound GlobalField2D... Generating docs for compound GlobalField3D... Generating docs for compound GridDataSource... Generating docs for compound GridFile... Generating docs for compound GridFromOptions... Generating docs for compound H5Format... Generating docs for compound HermiteSpline... Generating docs for compound IdaSolver... Generating docs for compound IMEXBDF2... Generating docs for compound Interpolation... Generating docs for compound InterpolationFactory... Generating docs for compound InvertPar... Generating docs for compound InvertParCR... Generating docs for compound KarniadakisSolver... Generating docs for compound Lagrange4pt... Generating docs for compound LaplaceCyclic... Generating docs for compound LaplaceFactory... Generating docs for compound LaplaceMultigrid... Generating docs for compound LaplaceMumps... Generating docs for compound LaplaceNaulin... Generating docs for compound LaplacePDD... Generating docs for nested compound LaplacePDD::PDD_data... Generating docs for compound LaplacePetsc... Generating docs for compound LaplaceSerialBand... Generating docs for compound LaplaceSerialTri... Generating docs for compound LaplaceShoot... Generating docs for compound LaplaceSPT... Generating docs for nested compound LaplaceSPT::SPT_data... Generating docs for compound LaplaceXY... Generating docs for compound LaplaceXZ... Generating docs for compound LaplaceXZcyclic... Generating docs for compound LaplaceXZpetsc... Generating docs for nested compound LaplaceXZpetsc::YSlice... Generating docs for compound Laplacian... Generating docs for compound LegacyModel... Generating docs for compound Literal... Generating docs for compound LoadVarOp... Generating docs for compound Matrix... Generating docs for compound Mesh... Generating docs for compound MeshFactory... Generating docs for compound metaData... Generating docs for compound Monitor... Generating docs for compound MonotonicHermiteSpline... Generating docs for compound MsgStack... Generating docs for compound MsgStackItem... Generating docs for compound Multigrid1DP... Generating docs for compound Multigrid2DPf1D... Generating docs for compound MultigridAlg... Generating docs for compound MultigridSerial... Generating docs for compound multiostream... Generating docs for compound multioutbuf... Generating docs for compound multioutbuf_init... Generating docs for compound Multiply... Generating docs for compound NcFormat... Generating docs for compound Ncxx4... Generating docs for compound OptionINI... Generating docs for compound OptionParser... Generating docs for compound Options... Generating docs for nested compound Options::AttributeType... Generating docs for nested compound Options::OptionValue... Generating docs for compound OptionsReader... Generating docs for compound Output... Generating docs for compound ParallelTransform... Generating docs for compound ParallelTransformIdentity... Generating docs for compound ParDerivFactory../builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx:265: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx:284: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/surfaceiter.hxx:37: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs_interface.hxx:292: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' . Generating docs for compound ParseException... Generating docs for compound PetscLib... Generating docs for compound PetscSolver... Generating docs for compound PhysicsModel... Generating docs for nested compound PhysicsModel::PhysicsModelMonitor... Generating docs for compound PncFormat... Generating docs for compound Power... Generating docs for compound PowerSolver... Generating docs for compound produceCombinations... Generating docs for compound PromoteType... Generating docs for compound PvodeSolver... Generating docs for compound RangeIterator... Generating docs for compound Region... Generating docs for compound RegionStats... Generating docs for compound RegisterInFactory... Generating docs for compound RegisterInFactory< Solver, DerivedType >... Generating docs for compound registerMethod... Generating docs for compound RK3SSP... Generating docs for compound RK4SIMPLEScheme... Generating docs for compound RK4Solver... Generating docs for compound RKF34Scheme... Generating docs for compound RKF45Scheme... Generating docs for compound RKGenericSolver... Generating docs for compound RKScheme... Generating docs for compound RKSchemeFactory... Generating docs for compound RunMetrics... Generating docs for compound SaveDerivsOp... Generating docs for compound SaveVarOp... Generating docs for compound Set... Generating docs for compound ShiftedMetric... Generating docs for nested compound ShiftedMetric::ParallelSlicePhase... Generating docs for compound SlepcLib... Generating docs for compound SlepcSolver... Generating docs for compound snes_info... Generating docs for compound SNESSolver... Generating docs for compound Solver... Generating docs for nested compound Solver::VarStr... Generating docs for compound SolverFactory... Generating docs for compound SpecificInd... Generating docs for compound SplitFluxDerivativeType... Generating docs for compound SplitRK... Generating docs for compound stencil... Generating docs for compound Subtract... Generating docs for compound SurfaceIter... Generating docs for compound Tensor... Generating docs for compound Timer... Generating docs for nested compound Timer::timer_info... Generating docs for compound TypeContainer... Generating docs for compound Uncopyable... Generating docs for compound Vector2D... Generating docs for compound Vector3D... Generating namespace index... Generating docs for namespace bout Generating docs for compound bout::HeatFluxSNB... Generating docs for namespace bout::derivatives Generating docs for namespace bout::derivatives::index Generating docs for namespace bout::experimental Generating docs for compound bout::experimental::CommandLineArgs... Generating docs for compound bout::experimental::OptionsNetCDF... Generating docs for namespace bout::fft Generating docs for namespace bout::globals Generating docs for namespace bout::inversion Generating docs for compound bout::inversion::InvertableOperator... Generating docs for namespace bout::utils Generating docs for compound bout::utils::_Unique_if... Generating docs for compound bout::utils::_Unique_if< T[]>... Generating docs for compound bout::utils::_Unique_if< T[N]>... Generating docs for compound bout::utils::function_traits... Generating docs for compound bout::utils::function_traits< R(*)(Args...)>... Generating docs for nested compound bout::utils::function_traits< R(*)(Args...)>::arg... Generating docs for namespace bout::utils::details Generating docs for compound bout::utils::details::CompareTypes... Generating docs for compound bout::utils::details::CompareTypes< T, T >... Generating docs for compound bout::utils::details::IsEqual... Generating docs for compound bout::utils::details::StaticCastOrThrow... Generating docs for compound bout::utils::details::ToString... Generating docs for namespace FV Generating docs for compound FV::Stencil1D... Generating docs for compound FV::Upwind... Generating docs for compound FV::Fromm... Generating docs for compound FV::MinMod... Generating docs for compound FV::MC... Generating docs for namespace gen_fieldops Generating docs for compound gen_fi/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/array.hxx:385: warning: Unsupported xml/html tag found eldops::Field... Generating docs for namespace pvode Generating docs for compound pvode::bandmat_type... Generating docs for compound pvode::CVodeMemRec... Generating docs for compound pvode::machenv_type... Generating docs for compound pvode::nvec_type... Generating docs for compound pvode::pvbbddata_type... Generating docs for compound pvode::SpgmrMemRec... Generating docs for namespace SI Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class bout::utils::_Unique_if Generating XML output for class bout::utils::_Unique_if< T[]> Generating XML output for class bout::utils::_Unique_if< T[N]> Generating XML output for class Add Generating XML output for class bout::utils::function_traits< R(*)(Args...)>::arg Generating XML output for class ArkodeSolver Generating XML output for class Array Generating XML output for class ArrayData Generating XML output for class asExpr Generating XML output for class asExpr< double > Generating XML output for class asExpr< Field3D > Generating XML output for class asExpr< float > Generating XML output for class asExpr< int > Generating XML output for class Options::AttributeType Generating XML output for class pvode::bandmat_type Generating XML output for class Bilinear Generating XML output for class BinaryExpr Generating XML output for class BinaryResult Generating XML output for class BoundaryConstGradient Generating XML output for class BoundaryConstLaplace Generating XML output for class BoundaryDirichlet Generating XML output for class BoundaryDirichlet_2ndOrder Generating XML output for class BoundaryDirichlet_4thOrder Generating XML output for class BoundaryDirichlet_O3 Generating XML output for class BoundaryDirichlet_O4 Generating XML output for class BoundaryDivCurl Generating XML output for class BoundaryFactory Generating XML output for class BoundaryFree Generating XML output for class BoundaryFree_O2 Generating XML output for class BoundaryFree_O3 Generating XML output for class BoundaryFromFieldAligned Generating XML output for class BoundaryModifier Generating XML output for class BoundaryNeumann Generating XML output for class BoundaryNeumann2 Generating XML output for class BoundaryNeumann_2ndOrder Generating XML output for class BoundaryNeumann_4thOrder Generating XML output for class BoundaryNeumann_NonOrthogonal Generating XML output for class BoundaryNeumann_O4 Generating XML output for class BoundaryNeumannPar Generating XML output for class BoundaryOp Generating XML output for class BoundaryOpBase Generating XML output for class BoundaryOpPar Generating XML output for class BoundaryOpPar_dirichlet Generating XML output for class BoundaryOpPar_dirichlet_interp Generating XML output for class BoundaryOpPar_dirichlet_O3 Generating XML output for class BoundaryOpPar_neumann Generating XML output for class BoundaryRegion Generating XML output for class BoundaryRegionBase Generating XML output for class BoundaryRegionPar Generating XML output for class BoundaryRegionXIn Generating XML output for class BoundaryRegionXOut Generating XML output for class BoundaryRegionYDown Generating XML output for class BoundaryRegionYUp Generating XML output for class BoundaryRelax Generating XML output for class BoundaryRobin Generating XML output for class BoundaryToFieldAligned Generating XML output for class BoundaryWidth Generating XML output for class BoundaryZeroLaplace Generating XML output for class BoundaryZeroLaplace2 Generating XML output for class BoutComm Generating XML output for class BoutException Generating XML output for class BoutIterationFail Generating XML output for class BoutMask /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:175: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text)=0 is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:191: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/dataformat.hxx:207: warning: The following parameter of DataFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value)=0 is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/generic_factory.hxx:57: warning: The following parameter of Factory::create(const std::string &name, Args &&... args) is not documented: parameter 'args' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/field2d.hxx:67: warning: The following parameters of Field2D::Field2D(Mesh *localmesh=nullptr, CELL_LOC location_in=CELL_CENTRE, DirectionTypes directions_in={YDirectionType::Standard, ZDirectionType::Average}) are not documented: parameter 'location_in' parameter 'directions_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/griddata.hxx:191: warning: The following parameter of GridFromOptions::get(Mesh *mesh, std::string &sval, const std::string &name, const std::string &def="") is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/griddata.hxx:217: warning: The following parameter of GridFromOptions::get(Mesh *mesh, BoutReal &rval, const std::string &name, BoutReal def=0.0) is not documented: parameter 'def' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:129: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:130: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/hdf5/h5_format.hxx:131: warning: The following parameter of H5Format::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' Generating XML output for class BoutMesh Generating XML output for class BoutMonitor Generating XML output for class BoutRhsFail Generating XML output for class CASHKARPScheme Generating XML output for class bout::experimental::CommandLineArgs Generating XML output for class BoutMesh::CommHandle Generating XML output for class bout::utils::details::CompareTypes Generating XML output for class bout::utils::details::CompareTypes< T, T > Generating XML output for class ConditionalOutput Generating XML output for class Coordinates Generating XML output for class pvode::CVodeMemRec Generating XML output for class CvodeSolver Generating XML output for class CyclicReduce Generating XML output for class Datafile Generating XML output for class DataFormat Generating XML output for class DeferredFunction Generating XML output for class DerivativeStore Generating XML output for class DerivativeType Generating XML output for class DirectionTypes Generating XML output for class Divide Generating XML output for class DummyOutput Generating XML output for class EmptyFormat Generating XML output for class enumWrapper Generating XML output for class EulerSolver Generating XML output for class ExpressionParser Generating XML output for class exprTraits Generating XML output for class exprTraits< double > Generating XML output for class exprTraits< float > Generating XML output for class exprTraits< int > Generating XML output for class Factory Generating XML output for class FCIMap Generating XML output for class FCITransform Generating XML output for class fcmplx Generating XML output for class Field Generating XML output for class gen_fieldops::Field Generating XML output for class Field2D Generating XML output for class Field2DExpr Generating XML output for class Field3D Generating XML output for class Field3DExpr Generating XML output for class FieldAbs Generating XML output for class FieldATan Generating XML output for class FieldBallooning Generating XML output for class FieldBinary Generating XML output for class FieldCos Generating XML output for class FieldCosh Generating XML output for class FieldData Generating XML output for class FieldErf Generating XML output for class FieldFactory Generating XML output for class FieldFunction Generating XML output for class FieldGaussian Generating XML output for class FieldGenerator Generating XML output for class FieldGenOneArg Generating XML output for class FieldGenTwoArg Generating XML output for class FieldGroup Generating XML output for class FieldHeaviside Generating XML output for class FieldMax Generating XML output for class FieldMin Generating XML output for class FieldMixmode Generating XML output for class FieldNull Generating XML output for class FieldPerp Generating XML output for class FieldRound Generating XML output for class FieldSin Generating XML output for class FieldSinh Generating XML output for class FieldSqrt Generating XML output for class FieldTanh Generating XML output for class FieldTanhHat Generating XML output for class FieldValue Generating XML output for class FieldValuePtr Generating XML output for class FieldVisitor Generating XML output for class FormatFactory Generating XML output for class FV::Fromm Generating XML output for class bout::utils::function_traits Generating XML output for class bout::utils::function_traits< R(*)(Args...)> Generating XML output for class GlobalField Generating XML output for class GlobalField2D Generating XML output for class GlobalField3D Generating XML output for class GridDataSource Generating XML output for class GridFile Generating XML output for class GridFromOptions Generating XML output for class H5Format Generating XML output for class bout::HeatFluxSNB Generating XML output for class HermiteSpline Generating XML output for class IdaSolver Generating XML output for class IMEXBDF2 Generating XML output for class BoundaryRegionPar::IndexPoint Generating XML output for class BoundaryRegionPar::Indices Generating XML output for class Interpolation Generating XML output for class InterpolationFactory Generating XML out/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:185: warning: argument 'MatA' from the argument list of LaplacePetsc::Element has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef1' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef2' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef3' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef4' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/petsc/petsc_laplace.hxx:186: warning: argument 'coef5' from the argument list of LaplacePetsc::Coeffs has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:212: warning: The following parameters of Laplacian::create(Options *opt=nullptr, const CELL_LOC loc=CELL_CENTRE, Mesh *mesh_in=nullptr) are not documented: parameter 'loc' parameter 'mesh_in' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'avec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'bvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/invert_laplace.hxx:255: warning: argument 'cvec' from the argument list of Laplacian::tridagMatrix has multiple @param documentation sections /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/mesh.hxx:730: warning: argument 'v' of command @param is not found in the argument list of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/mesh.hxx:748: warning: The following parameter of Mesh::indexVDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", REGION region=RGN_NOBNDRY) const is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:133: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:134: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf/nc_format.hxx:135: warning: The following parameter of NcFormat::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:134: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, std::string &text) is not documented: parameter 'text' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:135: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, int &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/fileio/impls/netcdf4/ncxx4.hxx:136: warning: The following parameter of Ncxx4::getAttribute(const std::string &varname, const std::string &attrname, BoutReal &value) is not documented: parameter 'value' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:160: warning: argument 'parent' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:160: warning: argument 'sectionName' of command @param is not found in the argument list of Options::Options(Options *parent_instance, std::string full_name) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/options.hxx:164: warning: The following parameters of Options::Options(Options *parent_instance, std::string full_name) are not documented: parameter 'parent_instance' parameter 'full_name' put for class bout::inversion::InvertableOperator Generating XML output for class InvertPar Generating XML output for class InvertParCR Generating XML output for class bout::utils::details::IsEqual Generating XML output for class KarniadakisSolver Generating XML output for class Lagrange4pt Generating XML output for class LaplaceCyclic Generating XML output for class LaplaceFactory Generating XML output for class LaplaceMultigrid Generating XML output for class LaplaceMumps Generating XML output for class LaplaceNaulin Generating XML output for class LaplacePDD Generating XML output for class LaplacePetsc Generating XML output for class LaplaceSerialBand Generating XML output for class LaplaceSerialTri Generating XML output for class LaplaceShoot Generating XML output for class LaplaceSPT Generating XML output for class LaplaceXY Generating XML output for class LaplaceXZ Generating XML output for class LaplaceXZcyclic Generating XML output for class LaplaceXZpetsc Generating XML output for class Laplacian Generating XML output for class LegacyModel Generating XML output for class ExpressionParser::LexInfo Generating XML output for class Literal Generating XML output for class LoadVarOp Generating XML output for class pvode::machenv_type Generating XML output for class Matrix Generating XML output for class FV::MC Generating XML output for class Mesh Generating XML output for class MeshFactory Generating XML output for class metaData Generating XML output for class FV::MinMod Generating XML output for class Monitor Generating XML output for class MonotonicHermiteSpline Generating XML output for class MsgStack Generating XML output for class MsgStackItem Generating XML output for class Multigrid1DP Generating XML output for class Multigrid2DPf1D Generating XML output for class MultigridAlg Generating XML output for class MultigridSerial Generating XML output for class multiostream Generating XML output for class multioutbuf Generating XML output for class multioutbuf_init Generating XML output for class Multiply Generating XML output for class NcFormat Generating XML output for class Ncxx4 Generating XML output for class pvode::nvec_type Generating XML output for class OptionINI Generating XML output for class OptionParser Generating XML output for class Options Generating XML output for class bout::experimental::OptionsNetCDF Generating XML output for class OptionsReader Generating XML output for class Options::OptionValue Generating XML output for class Output Generating XML output for class ShiftedMetric::ParallelSlicePhase Generating XML output for class ParallelTransform Generating XML output for class ParallelTransformIdentity Generating XML output for class ParDerivFactory Generating XML output for class ParseException Generating XML output for class LaplacePDD::PDD_data Generating XML output for class PetscLib Generating XML output for class PetscSolver Generating XML output for class PhysicsModel Generating XML output for class PhysicsModel::PhysicsModelMonitor Generating XML output for class PncFormat Generating XML output for class Power Generating XML output for class PowerSolver Generating XML output for class produceCombinations Generating XML output for class PromoteType Generating XML output for class pvode::pvbbddata_type Generating XML output for class PvodeSolver Generating XML output for class RangeIterator Generating XML output for class BoundaryRegionPar::RealPoint Generating XML output for class Region Generating XML output for class RegionStats Generating XML output for class RegisterInFactory Generating XML output for class RegisterInFactory< Solver, DerivedType > Generating XML output for class registerMethod Generating XML output for class RK3SSP Generating XML output for class RK4SIMPLEScheme Generating XML output for class RK4Solver Generating XML output for class RKF34Scheme Generating XML output for class RKF45Scheme Generating XML output for class RKGenericSolver Generating XML output for class RKScheme Generating XML output for class RKSchemeFactory Generating XML output for class RunMetric/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx:265: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Field2D &zangle, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/paralleltransform.hxx:284: warning: The following parameter of ShiftedMetric::shiftZ(const Field3D &f, const Tensor< dcomplex > &phs, const YDirectionType y_direction_out, const std::string ®ion="RGN_NOX") const is not documented: parameter 'region' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/surfaceiter.hxx:37: warning: The following parameter of SurfaceIter::SurfaceIter(Mesh *mesh, bool include_guards=false) is not documented: parameter 'include_guards' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs_interface.hxx:276: warning: argument 'v' of command @param is not found in the argument list of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/index_derivs_interface.hxx:292: warning: The following parameter of bout::derivatives::index::VDDX(const T &vel, const T &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT", const std::string ®ion="RGN_NOBNDRY") is not documented: parameter 'vel' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx:81: warning: Found unknown command '\v' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/variant.hxx:118: warning: Found unknown command '\v' s Generating XML output for class SaveDerivsOp Generating XML output for class SaveVarOp Generating XML output for class Set Generating XML output for class ShiftedMetric Generating XML output for class SlepcLib Generating XML output for class SlepcSolver Generating XML output for class snes_info Generating XML output for class SNESSolver Generating XML output for class Solver Generating XML output for class SolverFactory Generating XML output for class SpecificInd Generating XML output for class pvode::SpgmrMemRec Generating XML output for class SplitFluxDerivativeType Generating XML output for class SplitRK Generating XML output for class LaplaceSPT::SPT_data Generating XML output for class bout::utils::details::StaticCastOrThrow Generating XML output for class stencil Generating XML output for class FV::Stencil1D Generating XML output for class Subtract Generating XML output for class SurfaceIter Generating XML output for class Tensor Generating XML output for class Timer Generating XML output for class Timer::timer_info Generating XML output for class bout::utils::details::ToString Generating XML output for class TypeContainer Generating XML output for class Uncopyable Generating XML output for class FV::Upwind Generating XML output for class Datafile::VarStr Generating XML output for class Solver::VarStr Generating XML output for class Vector2D Generating XML output for class Vector3D Generating XML output for class LaplaceXZpetsc::YSlice Generating XML output for namespace @106 Generating XML output for namespace @107 Generating XML output for namespace @175 Generating XML output for namespace @176 Generating XML output for namespace @177 Generating XML output for namespace @189 Generating XML output for namespace @205 Generating XML output for namespace @207 Generating XML output for namespace @209 Generating XML output for namespace @211 Generating XML output for namespace @213 Generating XML output for namespace @215 Generating XML output for namespace @217 Generating XML output for namespace @219 Generating XML output for namespace @221 Generating XML output for namespace @223 Generating XML output for namespace @225 Generating XML output for namespace @235 Generating XML output for namespace @240 Generating XML output for namespace @242 Generating XML output for namespace @244 Generating XML output for namespace @247 Generating XML output for namespace @251 Generating XML output for namespace @256 Generating XML output for namespace @4 Generating XML output for namespace bout Generating XML output for namespace bout::derivatives Generating XML output for namespace bout::derivatives::index Generating XML output for namespace bout::experimental Generating XML output for namespace bout::fft Generating XML output for namespace bout::globals Generating XML output for namespace bout::inversion Generating XML output for namespace bout::utils Generating XML output for namespace bout::utils::details Generating XML output for namespace FV Generating XML output for namespace gen_fieldops Generating XML output for namespace netCDF Generating XML output for namespace pvode Generating XML output for namespace SI Generating XML output for namespace std Generating XML output for file boundary_factory.hxx Generating XML output for file boundary_op.hxx Generating XML output for file boundary_region.hxx Generating XML output for file boundary_standard.hxx Generating XML output for file bout.hxx Generating XML output for file array.hxx Generating XML output for file assert.hxx Generating XML output for file constants.hxx Generating XML output for file coordinates.hxx Generating XML output for file deprecated.hxx Generating XML output for file deriv_store.hxx Generating XML output for file expr.hxx Generating XML output for file field_visitor.hxx Generating XML output for file fieldgroup.hxx Generating XML output for file format.hxx Generating XML output for file fv_ops.hxx Generating XML output for file generic_factory.hxx Generating XML output for file globalfield.hxx Generating XML output for file griddata.hxx Generating XML ou/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx:208: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/difops.hxx:299: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:61: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:91: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:131: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' tput for file index_derivs.hxx Generating XML output for file index_derivs_interface.hxx Generating XML output for file laplacexy.hxx Generating XML output for file laplacexz.hxx Generating XML output for file invertable_operator.hxx Generating XML output for file macro_for_each.hxx Generating XML output for file mesh.hxx Generating XML output for file monitor.hxx Generating XML output for file openmpwrap.hxx Generating XML output for file paralleltransform.hxx Generating XML output for file petsclib.hxx Generating XML output for file physicsmodel.hxx Generating XML output for file region.hxx Generating XML output for file rkscheme.hxx Generating XML output for file rvec.hxx Generating XML output for file scorepwrapper.hxx Generating XML output for file slepclib.hxx Generating XML output for file snb.hxx Generating XML output for file solver.hxx Generating XML output for file solverfactory.hxx Generating XML output for file surfaceiter.hxx Generating XML output for file expressionparser.hxx Generating XML output for file gettext.hxx Generating XML output for file range.hxx Generating XML output for file timer.hxx Generating XML output for file type_name.hxx Generating XML output for file uncopyable.hxx Generating XML output for file variant.hxx Generating XML output for file template_combinations.hxx Generating XML output for file traits.hxx Generating XML output for file bout_types.hxx Generating XML output for file boutcomm.hxx Generating XML output for file boutexception.hxx Generating XML output for file boutmain.hxx Generating XML output for file cyclic_reduction.hxx Generating XML output for file datafile.hxx Generating XML output for file dataformat.hxx Generating XML output for file dcomplex.hxx Generating XML output for file derivs.hxx Generating XML output for file difops.hxx Generating XML output for file fft.hxx Generating XML output for file field.hxx Generating XML output for file field2d.hxx Generating XML output for file field3d.hxx Generating XML output for file field_data.hxx Generating XML output for file field_factory.hxx Generating XML output for file fieldperp.hxx Generating XML output for file globals.hxx Generating XML output for file gyro_average.hxx Generating XML output for file initialprofiles.hxx Generating XML output for file interpolation.hxx Generating XML output for file interpolation_factory.hxx Generating XML output for file invert_laplace.hxx Generating XML output for file invert_parderiv.hxx Generating XML output for file lapack_routines.hxx Generating XML output for file mask.hxx Generating XML output for file msg_stack.hxx Generating XML output for file multiostream.hxx Generating XML output for file options.hxx Generating XML output for file options_netcdf.hxx Generating XML output for file optionsreader.hxx Generating XML output for file output.hxx Generating XML output for file parallel_boundary_op.hxx Generating XML output for file parallel_boundary_region.hxx Generating XML output for file band.h Generating XML output for file cvdiag.h Generating XML output for file cvode.h Generating XML output for file cvspgmr.h Generating XML output for file iterativ.h Generating XML output for file llnlmath.h Generating XML output for file llnltyps.h Generating XML output for file nvector.h Generating XML output for file pvbbdpre.h Generating XML output for file smalldense.h Generating XML output for file spgmr.h Generating XML output for file vector.h Generating XML output for file smoothing.hxx Generating XML output for file sourcex.hxx Generating XML output for file stencils.hxx Generating XML output for file unused.hxx Generating XML output for file utils.hxx Generating XML output for file vecops.hxx Generating XML output for file vector2d.hxx Generating XML output for file vector3d.hxx Generating XML output for file where.hxx Generating XML output for file bout++.cxx Generating XML output for file field.cxx Generating XML output for file field2d.cxx Generating XML output for file field3d.cxx Generating XML output for file field_data.cxx Generating XML output for file field_factory.cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/difops.cxx:274: warning: The following parameter of Grad2_par2(const Field2D &f, CELL_LOC outloc=CELL_DEFAULT, const std::string &method="DEFAULT") is not documented: parameter 'method' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/mesh/difops.cxx:287: warning: The following parameter of Div_par_K_Grad_par(BoutReal kY, const Field2D &f, CELL_LOC outloc=CELL_DEFAULT) is not documented: parameter 'outloc' Generating XML output for file fieldgenerators.cxx Generating XML output for file fieldgenerators.hxx Generating XML output for file fieldgroup.cxx Generating XML output for file fieldperp.cxx Generating XML output for file gen_fieldops.py Generating XML output for file generated_fieldops.cxx Generating XML output for file globalfield.cxx Generating XML output for file initialprofiles.cxx Generating XML output for file vecops.cxx Generating XML output for file vector2d.cxx Generating XML output for file vector3d.cxx Generating XML output for file where.cxx Generating XML output for file datafile.cxx Generating XML output for file dataformat.cxx Generating XML output for file formatfactory.cxx Generating XML output for file formatfactory.hxx Generating XML output for file emptyformat.hxx Generating XML output for file h5_format.cxx Generating XML output for file h5_format.hxx Generating XML output for file nc_format.cxx Generating XML output for file nc_format.hxx Generating XML output for file ncxx4.cxx Generating XML output for file ncxx4.hxx Generating XML output for file pnetcdf.cxx Generating XML output for file pnetcdf.hxx Generating XML output for file fft_fftw.cxx Generating XML output for file lapack_routines.cxx Generating XML output for file cyclic_laplace.cxx Generating XML output for file cyclic_laplace.hxx Generating XML output for file multigrid_alg.cxx Generating XML output for file multigrid_laplace.cxx Generating XML output for file multigrid_laplace.hxx Generating XML output for file multigrid_solver.cxx Generating XML output for file mumps_laplace.cxx Generating XML output for file mumps_laplace.hxx Generating XML output for file naulin_laplace.cxx Generating XML output for file naulin_laplace.hxx Generating XML output for file pdd.cxx Generating XML output for file pdd.hxx Generating XML output for file petsc_laplace.cxx Generating XML output for file petsc_laplace.hxx Generating XML output for file serial_band.cxx Generating XML output for file serial_band.hxx Generating XML output for file serial_tri.cxx Generating XML output for file serial_tri.hxx Generating XML output for file shoot_laplace.cxx Generating XML output for file shoot_laplace.hxx Generating XML output for file spt.cxx Generating XML output for file spt.hxx Generating XML output for file invert_laplace.cxx Generating XML output for file laplacefactory.cxx Generating XML output for file laplacefactory.hxx Generating XML output for file laplacexy.cxx Generating XML output for file laplacexz-cyclic.cxx Generating XML output for file laplacexz-cyclic.hxx Generating XML output for file laplacexz-petsc.cxx Generating XML output for file laplacexz-petsc.hxx Generating XML output for file laplacexz.cxx Generating XML output for file cyclic.cxx Generating XML output for file cyclic.hxx Generating XML output for file invert_parderiv.cxx Generating XML output for file parderiv_factory.cxx Generating XML output for file parderiv_factory.hxx Generating XML output for file boundary_factory.cxx Generating XML output for file boundary_region.cxx Generating XML output for file boundary_standard.cxx Generating XML output for file coordinates.cxx Generating XML output for file gridfromfile.cxx Generating XML output for file gridfromoptions.cxx Generating XML output for file difops.cxx Generating XML output for file fv_ops.cxx Generating XML output for file boutmesh.cxx Generating XML output for file boutmesh.hxx Generating XML output for file index_derivs.cxx Generating XML output for file interpolation.cxx Generating XML output for file bilinear.cxx Generating XML output for file hermite_spline.cxx Generating XML output for file interpolation_factory.cxx Generating XML output for file lagrange_4pt.cxx Generating XML output for file monotonic_hermite_spline.cxx Generating XML output for file mesh.cxx Generating XML output for file meshfactory.cxx Generating XML output for file meshfactory.hxx Generating XML output for file fci.cxx Generating XML output for file fci.hxx Generating XML output for file identity.cxx Generating XML output for file shiftedmet/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:52: warning: argument 'flags' of command @param is not found in the argument list of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:78: warning: The following parameters of gyroPade0(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:84: warning: argument 'flags' of command @param is not found in the argument list of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:119: warning: The following parameters of gyroPade1(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/gyro_average.hxx:120: warning: argument 'flags' of command @param is not found in the argument list of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/physics/gyro_average.cxx:149: warning: The following parameters of gyroPade2(const Field3D &f, const Field3D &rho, int inner_boundary_flags, int outer_boundary_flags) are not documented: parameter 'inner_boundary_flags' parameter 'outer_boundary_flags' ric.cxx Generating XML output for file parallel_boundary_op.cxx Generating XML output for file parallel_boundary_region.cxx Generating XML output for file surfaceiter.cxx Generating XML output for file gyro_average.cxx Generating XML output for file physicsmodel.cxx Generating XML output for file smoothing.cxx Generating XML output for file snb.cxx Generating XML output for file sourcex.cxx Generating XML output for file arkode.cxx Generating XML output for file arkode.hxx Generating XML output for file cvode.cxx Generating XML output for file cvode.hxx Generating XML output for file euler.cxx Generating XML output for file euler.hxx Generating XML output for file ida.cxx Generating XML output for file ida.hxx Generating XML output for file imex-bdf2.cxx Generating XML output for file imex-bdf2.hxx Generating XML output for file karniadakis.cxx Generating XML output for file karniadakis.hxx Generating XML output for file petsc.cxx Generating XML output for file petsc.hxx Generating XML output for file power.cxx Generating XML output for file power.hxx Generating XML output for file pvode.cxx Generating XML output for file pvode.hxx Generating XML output for file rk3-ssp.cxx Generating XML output for file rk3-ssp.hxx Generating XML output for file rk4.cxx Generating XML output for file rk4.hxx Generating XML output for file cashkarp.cxx Generating XML output for file 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for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/solver/impls/split-rk/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/invert/laplace/impls/spt/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/include/bout/sys/ Generate XML output for dir /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/src/sys/ Generating XML output for the main page Running plantuml with JAVA... lookup cache used 17446/65536 hits=224989 misses=18182 finished... PYTHONPATH=../tools/pylib:$PYTHONPATH sphinx-build-3 -b html sphinx/ html/ Running Sphinx v3.3.1 breathe module not installed recommonmark module not installed making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 40 source files that are out of date updating environment: [new config] 40 added, 0 changed, 0 removed reading sources... [ 2%] _apidoc/boutdata /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/data.py:191: SyntaxWarning: "is" with a literal. Did you mean "=="? if sectionname is "root": /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/data.py:206: SyntaxWarning: "is not" with a literal. Did you mean "!="? if nested_sectionname is not "": /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/data.py:217: SyntaxWarning: "is not" with a literal. 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[ 7%] _apidoc/zoidberg /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/poloidal_grid.py:32: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/rzline.py:18: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/plot.py:12: UserWarning: Couldn't import matplotlib, plotting not available. warnings.warn("Couldn't import matplotlib, plotting not available.") reading sources... [ 10%] api_reference reading sources... [ 12%] developer_docs/code_layout reading sources... [ 15%] developer_docs/contributing reading sources... [ 17%] developer_docs/data_types reading sources... [ 20%] developer_docs/file_io reading sources... 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[100%] user_docs/variable_init WARNING: missing attribute mentioned in :members: or __all__: module boutdata, attribute gen_surface WARNING: missing attribute mentioned in :members: or __all__: module boutdata, attribute pol_slice WARNING: autodoc: failed to import module 'cbdtoeqdsk' from module 'boutdata'; the following exception was raised: No module named 'bunch' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'griddata' from module 'boutdata'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised: No module named 'enthought' WARNING: autodoc: failed to import module 'mms' from module 'boutdata'; the following exception was raised: No module named 'sympy' /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/restart.py:docstring of boutdata.restart.normal:55: WARNING: Footnote [1] is not referenced. WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute calculus WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute closest_line WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute linear_regression WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute run_wrapper WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised: No module named 'tvtk' WARNING: autodoc: failed to import module 'contour' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'fft_integrate' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'plotdata' from module 'boututils'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'plotpolslice' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'read_geqdsk' from module 'boututils'; the following exception was raised: No module named 'bunch' WARNING: autodoc: failed to import module 'showdata' from module 'boututils'; the following exception was raised: No module named 'matplotlib' WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised: No module named 'past' WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.attributes:1: WARNING: duplicate object description of zoidberg.field.MagneticField.attributes, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/field.py:docstring of zoidberg.field.MagneticField.boundary:1: WARNING: duplicate object description of zoidberg.field.MagneticField.boundary, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg:1: WARNING: duplicate object description of zoidberg, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.make_maps:1: WARNING: duplicate object description of zoidberg.make_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/zoidberg/__init__.py:docstring of zoidberg.write_maps:1: WARNING: duplicate object description of zoidberg.write_maps, other instance in _apidoc/zoidberg, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:75: WARNING: Definition list ends without a blank line; unexpected unindent. /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:119: WARNING: malformed hyperlink target. WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_deriv WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute fft_integrate WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute int_func WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute mode_structure WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute shell WARNING: missing attribute mentioned in :members: or __all__: module boututils, attribute showdata /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them looking for now-outdated files... /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/__init__.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio WARNING: autodoc: failed to import module 'boutcore'; the following exception was raised: /usr/lib64/openmpi/lib/libpetsc.so.3.14: undefined symbol: H5Pset_dxpl_mpio none found pickling environment... done checking consistency... done /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst: WARNING: document isn't included in any toctree preparing documents... done writing output... 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[ 52%] user_docs/differential_operators writing output... [ 55%] user_docs/eigenvalue_solver writing output... [ 57%] user_docs/input_grids writing output... [ 60%] user_docs/installing writing output... [ 62%] user_docs/introduction writing output... [ 65%] user_docs/invertable_operator writing output... [ 67%] user_docs/laplacian writing output... [ 70%] user_docs/makefiles writing output... [ 72%] user_docs/nonlocal writing output... [ 75%] user_docs/output_and_post writing output... [ 77%] user_docs/parallel-transforms writing output... [ 80%] user_docs/physics_models writing output... [ 82%] user_docs/preconditioning writing output... [ 85%] user_docs/python writing output... [ 87%] user_docs/python_boutcore writing output... [ 90%] user_docs/running_bout writing output... [ 92%] user_docs/staggered_grids writing output... [ 95%] user_docs/testing writing output... [ 97%] user_docs/time_integration writing output... [100%] user_docs/variable_init /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tools/pylib/boutdata/restart.py:docstring of boutdata.restart.normal:14: WARNING: undefined label: random-quick-start (if the link has no caption the label must precede a section header) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: ../_breathe_autogen/file/field2d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: ../_breathe_autogen/file/field3d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: ../_breathe_autogen/file/field__data_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: ../_breathe_autogen/file/fieldperp_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: ../_breathe_autogen/file/initialprofiles_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: ../_breathe_autogen/file/vecops_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: ../_breathe_autogen/file/difops_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: ../_breathe_autogen/file/vector2d_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: ../_breathe_autogen/file/vector3d_8cxx 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If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] mesh:maxregionblocksize ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] mesh:maxregionblocksize ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] mesh:maxregionblocksize ----^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/data_types.rst:385: WARNING: Unparseable C++ cross-reference: 'BOUT.inp' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 4] BOUT.inp ----^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 4] BOUT.inp ----^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 4] BOUT.inp ----^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/griddata_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/datafile_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:4: WARNING: unknown document: ../_breathe_autogen/file/datafile_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:13: WARNING: unknown document: ../_breathe_autogen/file/dataformat_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/file_io.rst:268: WARNING: Unparseable C++ cross-reference: 'restart.redistribute' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 7] restart.redistribute -------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 7] restart.redistribute -------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 7] restart.redistribute -------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/field2d_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/field3d_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: ../_breathe_autogen/file/fieldperp_8hxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:182: WARNING: Unparseable C++ cross-reference: 'return\n0.5*(f.p - f.m);' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: return [error at 6] return 0.5*(f.p - f.m); ------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:192: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:196: WARNING: Unparseable C++ cross-reference: '1' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] 1 ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:221: WARNING: Unparseable C++ cross-reference: 'REGISTER_DERIVATIVE(DDX_C2)()' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If full function ref: Error when parsing function declaration. If the function has no return type: Invalid C++ declaration: Expected end of definition or ;. [error at 27] REGISTER_DERIVATIVE(DDX_C2)() ---------------------------^ If the function has a return type: Error in declarator If declarator-id with parameters-and-qualifiers: Invalid C++ declaration: Expected identifier in nested name. [error at 19] REGISTER_DERIVATIVE(DDX_C2)() -------------------^ If parenthesis in noptr-declarator: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected '::' in pointer to member (function). [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ If declarator-id: Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 26] REGISTER_DERIVATIVE(DDX_C2)() --------------------------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:238: WARNING: Unparseable C++ cross-reference: '"C2"' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] "C2" ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/differential_operators.rst:278: WARNING: Could not lex literal_block as "cpp". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/installing.rst:190: WARNING: Unparseable C++ cross-reference: 'export LC_CTYPE=C.utf8' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name, got keyword: export [error at 6] export LC_CTYPE=C.utf8 ------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/installing.rst:358: WARNING: undefined label: sec-install-bout (if the link has no caption the label must precede a section header) /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:30: WARNING: Unparseable C++ cross-reference: 'examples/invertable_operator' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected end of definition. [error at 8] examples/invertable_operator --------^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 8] examples/invertable_operator --------^ If the function has a return type: Error in declarator or parameters-and-qualifiers If pointer to member declarator: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ If declarator-id: Invalid C++ declaration: Expected identifier in nested name. [error at 8] examples/invertable_operator --------^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -ksp_type ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/invertable_operator.rst:98: WARNING: Unparseable C++ cross-reference: '-invertable_ksp_type' Error in cross-reference. If shorthand ref: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If full function ref: Error when parsing function declaration. If the function has no return type: Error in declarator or parameters-and-qualifiers Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ If the function has a return type: Invalid C++ declaration: Expected identifier in nested name. [error at 0] -invertable_ksp_type ^ /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/laplacian.rst:186: WARNING: unknown document: ../_breathe_autogen/file/invert__laplace_8cxx /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/nonlocal.rst:117: WARNING: undefined label: tab-snb-options /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/output_and_post.rst:587: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped. /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/sphinx/user_docs/time_integration.rst:916: WARNING: unknown document: ../_breathe_autogen/file/bout_09_09_8cxx genindex py-modindex done writing additional pages... search done copying images... [ 4%] figs/layout1.png copying images... [ 8%] figs/layout2.png copying images... [ 13%] figs/memory.png copying images... [ 17%] user_docs/../figs/fluid_norm_mc.png copying images... [ 21%] figs/diffStencils.png copying images... 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[100%] figs/init_balloon.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 180 warnings. The HTML pages are in html. Documentation available in file:///builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual/html/index.html make: Leaving directory '/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/manual' + '[' openmpi = mpich ']' + '[' openmpi = openmpi ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval unset 'MPI_COMPILER; LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib;' export 'LD_LIBRARY_PATH; unset' 'MPI_MAN; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_HOME; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_SUFFIX; ~/build/BUILD/BOUT++-v4.3.2 LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib:1;' export 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ unset MPI_COMPILER ++ LD_LIBRARY_PATH=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib ++ export LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_SUFFIX ++ LD_LIBRARY_PATH_modshare=/builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yEZHSK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 ++ dirname /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 + cd BOUT++-v4.3.2 + for mpi in mpich openmpi ~/build/BUILD/BOUT++-v4.3.2/build_mpich ~/build/BUILD/BOUT++-v4.3.2 + pushd build_mpich + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64::;' export 'MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH; MODULES_LMCONFLICT_modshare=mpi/mpich-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME; LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG; MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH; _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/mpich-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/mpich-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/mpich-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export 'CFLAGS= -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/{/usr/lib64/mpich/lib,/usr/lib64/mpich/bin,/usr/share/bout++/idllib} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/share/bout++/pylib/{boutdata,boututils} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//bout/invert/ /usr/bin/install -c -m 644 lib/libbout++.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib /usr/bin/install -c -m 644 lib/libpvode.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib /usr/bin/install -c -m 644 lib/libpvpre.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/pylib/boutdata/*.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/pylib/boutdata/ /usr/bin/install -c -m 644 tools/pylib/boututils/*.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/pylib/boututils/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/mpich-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/mpich/lib|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/mpich-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/mpich-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.3.2-4.fc34' /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/include/mpich-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++ + rm -f /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/mpich/lib/libbout++.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/mpich/lib/libpvode.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/mpich/lib/libpvpre.a + install lib/libbout++.so.4.3.1 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/mpich/lib/ + pushd /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/mpich/lib/ ~/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib ~/build/BUILD/BOUT++-v4.3.2/build_mpich ~/build/BUILD/BOUT++-v4.3.2 + for f in *.so.* + ln -s libbout++.so.4.3.1 libbout++.so + for f in *.so.* + ln -s libpvode.so.1.0.0 libpvode.so + for f in *.so.* + ln -s libpvpre.so.1.0.0 libpvpre.so + popd ~/build/BUILD/BOUT++-v4.3.2/build_mpich ~/build/BUILD/BOUT++-v4.3.2 ~/build/BUILD/BOUT++-v4.3.2 + popd + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/modulefiles/bout++ + cat + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /usr/lib64/mpich/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/usr/lib64/mpich/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval unset 'LD_LIBRARY_PATH; unset' 'MPI_COMPILER; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' 'MPI_MAN; unset' 'MPI_PYTHON_SITEARCH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_HOME; unset' 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' 'MPI_SUFFIX; ~/build/BUILD/BOUT++-v4.3.2/build_openmpi ~/build/BUILD/BOUT++-v4.3.2 unset' 'MPI_PYTHON2_SITEARCH; unset' '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ unset MPI_PYTHON2_SITEARCH ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + for mpi in mpich openmpi + pushd build_openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:;' export 'MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH; MODULES_LMCONFLICT_modshare=mpi/openmpi-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR; MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX; LD_LIBRARY_PATH_modshare=/usr/lib64/openmpi/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG; _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/openmpi-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN; PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/openmpi-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ LD_LIBRARY_PATH_modshare=/usr/lib64/openmpi/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/openmpi-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + make install DESTDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 # Pre-install commands follow. # Normal commands follow. /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//{,pvode,bout/sys,bout/invert} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/{/usr/lib64/openmpi/lib,/usr/lib64/openmpi/bin,/usr/share/bout++/idllib} /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/share/bout++/pylib/{boutdata,boututils} /usr/bin/install -c -m 644 include/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++/ /usr/bin/install -c -m 644 include/pvode/*.h /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//pvode/ /usr/bin/install -c -m 644 include/bout/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//bout/ /usr/bin/install -c -m 644 include/bout/sys/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//bout/sys/ /usr/bin/install -c -m 644 include/bout/invert/*.hxx /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//bout/invert/ /usr/bin/install -c -m 644 lib/libbout++.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c -m 644 lib/libpvode.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c -m 644 lib/libpvpre.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib /usr/bin/install -c bin/bout-config /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c bin/bout-log-color /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin /usr/bin/install -c -m 644 tools/idllib/*.pro /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/idllib/README /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/idllib/ /usr/bin/install -c -m 644 tools/pylib/boutdata/*.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/pylib/boutdata/ /usr/bin/install -c -m 644 tools/pylib/boututils/*.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++/pylib/boututils/ /usr/bin/install -c -m 644 make.config /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++/ for mo in de/LC_MESSAGES/libbout.mo es/LC_MESSAGES/libbout.mo fr/LC_MESSAGES/libbout.mo zh_CN/LC_MESSAGES/libbout.mo zh_TW/LC_MESSAGES/libbout.mo; do /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/locale/`dirname $mo`; /usr/bin/install -c -m 644 locale/$mo /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/locale/$mo; done # Post-install commands follow. sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^idlpath=.*|idlpath=/usr/share/bout++/idllib/|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^pythonpath=.*|pythonpath=/usr/share/bout++/pylib/|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/bin/bout-config sed -i "s|^BOUT_INCLUDE_PATH=.*|BOUT_INCLUDE_PATH=/usr/include/openmpi-x86_64/bout++|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_LIB_PATH=.*|BOUT_LIB_PATH=/usr/lib64/openmpi/lib|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i "s|^BOUT_CONFIG_FILE=.*|BOUT_CONFIG_FILE=/usr/include/openmpi-x86_64/bout++/make.config|" /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//make.config sed -i '26 i RELEASED = yes' /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/include/openmpi-x86_64/bout++//make.config + sed -i '27 i RELEASED = 4.3.2-4.fc34' /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/include/openmpi-x86_64/bout++/make.config + rm -rf /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/bout++ + rm -f /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/openmpi/lib/libbout++.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/openmpi/lib/libpvode.a /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/openmpi/lib/libpvpre.a + install lib/libbout++.so.4.3.1 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/openmpi/lib/ + pushd /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/openmpi/lib/ ~/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib ~/build/BUILD/BOUT++-v4.3.2/build_openmpi ~/build/BUILD/BOUT++-v4.3.2 + for f in *.so.* + ln -s libbout++.so.4.3.1 libbout++.so + for f in *.so.* + ln -s libpvode.so.1.0.0 libpvode.so + for f in *.so.* + ln -s libpvpre.so.1.0.0 libpvpre.so + popd ~/build/BUILD/BOUT++-v4.3.2/build_openmpi ~/build/BUILD/BOUT++-v4.3.2 ~/build/BUILD/BOUT++-v4.3.2 + popd + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/modulefiles/bout++ + cat + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /usr/lib64/openmpi/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/usr/lib64/openmpi/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval unset 'MPI_COMPILER; unset' 'LD_LIBRARY_PATH; unset' 'MPI_MAN; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_HOME; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_SUFFIX; unset' 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' '_LMFILES__modshare; ~/build/BUILD/BOUT++-v4.3.2/tools/pylib ~/build/BUILD/BOUT++-v4.3.2 unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_SUFFIX ++ unset LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + pushd tools/pylib + for d in boutdata bout_runners boututils zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/boutdata + cp boutdata/__init__.py boutdata/cbdtoeqdsk.py boutdata/collect.py boutdata/data.py boutdata/gen_surface.py boutdata/griddata.py boutdata/input.py boutdata/mayavi2.py boutdata/mms.py boutdata/pol_slice.py boutdata/processor_rearrange.py boutdata/restart.py boutdata/settings.py boutdata/shiftz.py boutdata/squashoutput.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/boutdata/ + for d in boutdata bout_runners boututils zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/bout_runners + cp bout_runners/__init__.py bout_runners/bout_runners.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/bout_runners/ + for d in boutdata bout_runners boututils zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/boututils + cp boututils/View3D.py boututils/__init__.py boututils/analyse_equil_2.py boututils/anim.py boututils/ask.py boututils/boutarray.py boututils/boutgrid.py boututils/boutwarnings.py boututils/calculus.py boututils/check_scaling.py boututils/closest_line.py boututils/contour.py boututils/crosslines.py boututils/datafile.py boututils/efit_analyzer.py boututils/fft_deriv.py boututils/fft_integrate.py boututils/file_import.py boututils/geqdsk.py boututils/idl_tabulate.py boututils/int_func.py boututils/linear_regression.py boututils/local_min_max.py boututils/mode_structure.py boututils/moment_xyzt.py boututils/options.py boututils/plotdata.py boututils/plotpolslice.py boututils/radial_grid.py boututils/read_geqdsk.py boututils/run_wrapper.py boututils/showdata.py boututils/spectrogram.py boututils/surface_average.py boututils/volume_integral.py boututils/watch.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/boututils/ + for d in boutdata bout_runners boututils zoidberg + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/zoidberg + cp zoidberg/__init__.py zoidberg/boundary.py zoidberg/field.py zoidberg/fieldtracer.py zoidberg/grid.py zoidberg/plot.py zoidberg/poloidal_grid.py zoidberg/progress.py zoidberg/rzline.py zoidberg/test_field.py zoidberg/test_fieldtracer.py zoidberg/test_grid.py zoidberg/test_poloidal_grid.py zoidberg/test_rzline.py zoidberg/test_zoidberg.py zoidberg/zoidberg.py /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib/python3.9/site-packages/zoidberg/ + popd ~/build/BUILD/BOUT++-v4.3.2 ++ ls build_mpich/manual build_openmpi/manual -d ++ head -n1 + mandir=build_mpich/manual + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/share/doc/bout++/ + rm -rf build_mpich/manual/html/.buildinfo + rm -rf build_mpich/manual/html/.doctrees + rm -rf build_mpich/manual/html/_sources + cp -r build_mpich/manual/html /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/share/doc/bout++/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/python3.9/site-packages/mpich/ + install build_mpich/tools/pylib/boutcore.cpython-39-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/python3.9/site-packages/mpich/ + for mpi in mpich openmpi + mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/python3.9/site-packages/openmpi/ + install build_openmpi/tools/pylib/boutcore.cpython-39-x86_64-linux-gnu.so /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64//usr/lib64/python3.9/site-packages/openmpi/ + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 libbout + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 4.3.2-4.fc34 --unique-debug-suffix -4.3.2-4.fc34.x86_64 --unique-debug-src-base bout++-4.3.2-4.fc34.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v4.3.2 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libbout++.so.4.3.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libbout++.so.4.3.1 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libbout++.so.4.3.1 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libbout++.so.4.3.1 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/python3.9/site-packages/mpich/boutcore.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/python3.9/site-packages/mpich/boutcore.cpython-39-x86_64-linux-gnu.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/python3.9/site-packages/openmpi/boutcore.cpython-39-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/python3.9/site-packages/openmpi/boutcore.cpython-39-x86_64-linux-gnu.so original debug info size: 320780kB, size after compression: 231800kB /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. 16849 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib/debug/usr/lib64/python3.9 using /usr/bin/python3.9 Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib/python3.9 using /usr/bin/python3.9 /usr/lib/python3.9/site-packages/boutdata/data.py:191: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/site-packages/boutdata/data.py:206: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/boutdata/data.py:217: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/boututils/options.py:94: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/boutdata/data.py:191: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.9/site-packages/boutdata/data.py:206: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/boutdata/data.py:217: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/site-packages/boututils/options.py:94: SyntaxWarning: "is not" with a literal. Did you mean "!="? Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/lib64/python3.9 using /usr/bin/python3.9 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib/python3.9/site-packages/boututils/geqdsk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/python3.9/site-packages/boututils/boutgrid.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/python3.9/site-packages/boututils/anim.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/python3.9/site-packages/bout_runners/bout_runners.py is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.38AnEv + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + for mpi in mpich openmpi + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64 + eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH; MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER; MANPATH=/usr/share/man/mpich-x86_64::;' export 'MANPATH; MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE; MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN; MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH; _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH; ~/build/BUILD/BOUT++-v4.3.2/build_mpich ~/build/BUILD/BOUT++-v4.3.2 MODULES_LMCONFLICT_modshare=mpi/mpich-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR; MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME; LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG; MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX; MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH; _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/mpich-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB; PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-x86_64:: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/mpich-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/mpich-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/mpich/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ LD_LIBRARY_PATH_modshare=/usr/lib64/mpich/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/mpich-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/lib64/mpich/bin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export 'CFLAGS= -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + pushd build_mpich + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling wave.cxx Compiling test_yupdown.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_yupdown.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_yupdown.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ Linking wave In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling wave.cxx Linking testVec In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Compiling fci_mms.cxx Linking test-twistshift In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from fci_mms.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from fci_mms.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Compiling diffusion.cxx Linking test-twistshift Compiling fuu.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from diffusion.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../..//include/dataformat.hxx:40, from ../../..//include/datafile.hxx:20, from ../../..//include/bout.hxx:40, from diffusion.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from fuu.hxx:4, from fuu.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from fuu.hxx:4, from fuu.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tests/integrated/test-subdir/fuu.a Compiling bar.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from bar.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../../include/dataformat.hxx:40, from ../../../../include/datafile.hxx:20, from ../../../../include/bout.hxx:40, from bar.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking cyto Adding bar.o to /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tests/integrated/test-subdir/bar.a Compiling subdirs.cxx Compiling test_extras.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from test_extras.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from test_extras.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking subdirs Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_variant.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_variant.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_variant.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_stopCheck.cxx Compiling sys/test_utils.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_utils.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_utils.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_solver Compiling sys/test_type_name.cxx Compiling test_snb.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_type_name.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_type_name.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_timer.cxx Compiling sys/test_range.cxx Linking test_snb Compiling test_smooth.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_smooth.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_smooth.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_output.cxx Linking test_smooth Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_restarting Compiling test-restart-io.cxx Compiling sys/test_optionsreader.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test_region_iterator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_region_iterator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_region_iterator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_region_iterator Compiling sys/test_options_netcdf.cxx Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_naulin_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_naulin_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_netcdf.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_netcdf.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_naulin_laplace Compiling test_multigrid_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_multigrid_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_multigrid_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_fields.cxx Linking test_multigrid_laplace In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_fields.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_fields.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:42: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:42: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:47: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:47: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:52: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:52: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:61: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:61: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Linking test_laplace Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_io.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_io.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io Compiling test_invpar.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_invpar.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_invpar.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_invpar Compiling invertable_operator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking invertable_operator Compiling sys/test_msg_stack.cxx Compiling test_interpolate.cxx In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_msg_stack.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_msg_stack.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_interpolate.cxx:13: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_interpolate.cxx:13: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390, from sys/test_msg_stack.cxx:4: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:34: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ^ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Compiling sys/test_expressionparser.cxx Linking test_interpolate In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_expressionparser.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_expressionparser.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling sys/test_boutexception.cxx Compiling test_gyro.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_gyro.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_gyro.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_gyro Compiling src/test_bout++.cxx Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from src/test_bout++.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from src/test_bout++.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_fieldfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_fieldfactory.cxx:8: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_fieldfactory.cxx:8: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solverfactory.cxx Linking test_fieldfactory In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solver.cxx Linking 2fluid In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_delp2.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_delp2 Compiling test_cyclic.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_cyclic.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test_cyclic.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_cyclic Compiling solver/test_fakesolver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_fakesolver.hxx:4, from solver/test_fakesolver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_fakesolver.hxx:4, from solver/test_fakesolver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test-coordinates-initialization.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-coordinates-initialization.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from test-coordinates-initialization.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-coordinates-initialization Compiling command-args.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from command-args.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/dataformat.hxx:40, from ../../../include/datafile.hxx:20, from ../../../include/bout.hxx:40, from command-args.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_paralleltransform.cxx Linking command-args In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_mesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_mesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_interpolation.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_interpolation.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_interpolation.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_coordinates.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_coordinates.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_coordinates.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boutmesh.cxx Compiling mesh/test_boundary_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boutmesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boutmesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/parallel/test_shiftedmetric.cxx Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/parallel/test_shiftedmetric.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/parallel/test_shiftedmetric.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert/test_fft.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from invert/test_fft.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from invert/test_fft.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from invert/test_fft.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from invert/test_fft.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_mask.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_mask.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_interpolation_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from include/test_derivs.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_derivs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from include/test_derivs.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_derivs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_cyclic_reduction.cxx In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx Compiling include/bout/test_template_combinations.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_traits.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_traits.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_region.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_region.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_monitor.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_monitor.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_where.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_where.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector3d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector3d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector2d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector2d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx Compiling field/test_fieldperp.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_initialprofiles.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_initialprofiles.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_fieldperp.cxx:445:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 445 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:445:19: note: use reference type to prevent copying 445 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_fieldperp.cxx:487:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 487 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:487:19: note: use reference type to prevent copying 487 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_fieldperp.cxx:529:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 529 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:529:19: note: use reference type to prevent copying 529 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_fieldperp.cxx:575:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 575 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:575:19: note: use reference type to prevent copying 575 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_fieldgroup.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_fieldgroup.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOX_Test::TestBody()': field/test_field3d.cxx:549:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 549 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:549:19: note: use reference type to prevent copying 549 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOY_Test::TestBody()': field/test_field3d.cxx:598:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 598 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:598:19: note: use reference type to prevent copying 598 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOZ_Test::TestBody()': field/test_field3d.cxx:652:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 652 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:652:19: note: use reference type to prevent copying 652 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field3d.cxx:701:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 701 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:701:19: note: use reference type to prevent copying 701 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field3d.cxx:749:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 749 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:749:19: note: use reference type to prevent copying 749 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field3d.cxx:795:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 795 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:795:19: note: use reference type to prevent copying 795 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field3d.cxx:847:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 847 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:847:19: note: use reference type to prevent copying 847 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_field2d.cxx field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gtest-all.o Compiling bout_test_main.o Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/ccDOKQEg.ltrans3.ltrans.o: in function `OutputTest::OutputTest()': /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + LD_PRELOAD=/usr/lib64/libSegFault.so + make check Linking tests /usr/bin/ld: /tmp/cchprgmc.ltrans3.ltrans.o: in function `OutputTest::OutputTest()': /builddir/build/BUILD/BOUT++-v4.3.2/build_mpich/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1510 tests from 104 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (7 ms total) [----------] 1 test from SignalHandlerTestDeathTest (128 ms total) [----------] 10 tests from FieldTest (3 ms total) [----------] 78 tests from Field2DTest (39 ms total) [----------] 126 tests from Field3DTest (34 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (12 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (12 ms total) [----------] 28 tests from FieldFactoryTest (8 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total) [----------] 26 tests from FieldGroupTest (1 ms total) [----------] 96 tests from FieldPerpTest (21 ms total) [----------] 10 tests from InitialProfileTest (3 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (7 ms total) [----------] 49 tests from Vector3DTest (8 ms total) [----------] 10 tests from WhereTest (3 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (0 ms total) [----------] 25 tests from DerivativeStoreTest (10 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (0 ms total) [----------] 33 tests from RegionTest (7 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (0 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (1 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (1 ms total) [----------] 23 tests from FieldIndexTest/0 (0 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (3 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (0 ms total) [----------] 9 tests from InterpolationFactoryTest (2 ms total) [----------] 11 tests from MaskTest (4 ms total) [----------] 34 tests from GridFromOptionsTest (129 ms total) [----------] 9 tests from ShiftedMetricTest (2 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (5 ms total) [----------] 4 tests from CoordinatesTest (1 ms total) [----------] 16 tests from Field3DInterpToTest (1 ms total) [----------] 8 tests from Field2DInterpToTest (1 ms total) [----------] 24 tests from MeshTest (2 ms total) [----------] 6 tests from ParallelTransformTest (1 ms total) [----------] 46 tests from SolverTest (17 ms total) [----------] 12 tests from SolverFactoryTest (1 ms total) [----------] 20 tests from ParseCommandLineArgs (1 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (1 ms total) [----------] 3 tests from BoutExceptionTest (2283 ms total) [----------] 1 test from BoutRhsFailTest (1 ms total) [----------] 2 tests from BoutParallelRhsFailTest (0 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (2 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (0 ms total) [----------] 95 tests from OptionsTest (20 ms total) [----------] 12 tests from OptionsFieldTest (3 ms total) [----------] 12 tests from OptionsNetCDFTest (22 ms total) [----------] 20 tests from OptionsReaderTest (3 ms total) [----------] 20 tests from OutputTest (1 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 10 tests from TimerTest (17 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (1 ms total) [----------] 14 tests from TensorTest (1 ms total) [----------] 4 tests from Invert3x3Test (0 ms total) [----------] 13 tests from NumberUtilitiesTest (1 ms total) [----------] 18 tests from StringUtilitiesTest (1 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (2 ms total) [----------] 5 tests from FirstY/DerivativesTest (3 ms total) [----------] 6 tests from FirstZ/DerivativesTest (4 ms total) [----------] 2 tests from SecondX/DerivativesTest (1 ms total) [----------] 2 tests from SecondY/DerivativesTest (1 ms total) [----------] 3 tests from SecondZ/DerivativesTest (1 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (1 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (2 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (2 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (2 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (2 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (2 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (2 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (1 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (0 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (1 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (1 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (1 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (2 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (2 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (2 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (2 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (2 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (2 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (0 ms total) [==========] 1510 tests from 104 test suites ran. (2882 ms total) [ PASSED ] 1510 tests. ======= Making 53 integrated tests ======== test-yupdown ✓ 0.013 s test-vec ✓ 0.013 s test-twistshift ✓ 0.013 s test-twistshift-staggered ✓ 0.013 s test-subdir ✓ 0.033 s test-stopCheck ✓ 0.013 s test-stopCheck-file ✓ 0.013 s test-squash S - all_tests => False test-solver ✓ 0.013 s test-snb ✓ 0.013 s test-smooth ✓ 0.013 s test-slepc-solver S - slepc => False test-restarting ✓ 0.013 s test-restart-io_hdf5 S - all_tests => False test-restart-io ✓ 0.013 s test-region-iterator ✓ 0.013 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.013 s test-multigrid_laplace ✓ 0.013 s test-laplace ✓ 0.013 s test-io_hdf5 S - all_tests => False test-io ✓ 0.013 s test-invpar ✓ 0.013 s test-invertable-operator ✓ 0.013 s test-interpolate ✓ 0.013 s test-interchange-instability ✓ 0.013 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.013 s test-griddata ✓ 0.013 s test-griddata-yboundary-guards ✓ 0.013 s test-fieldgroupComm S - all_tests => False test-fieldgroup S - not make => False test-fieldfactory ✓ 0.013 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.013 s test-delp2 ✓ 0.013 s test-datadir S - all_tests => False test-cyclic ✓ 0.013 s test-coordinates-initialization ✓ 0.013 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.013 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-attribs S - all_tests => False ======= All tests passed in 0.43 seconds ======= ======= Running 53 integrated tests ======== test-yupdown ✓ 0.574 s test-vec ✓ 2.342 s test-twistshift ✓ 0.553 s test-twistshift-staggered ✓ 0.540 s test-subdir ✓ 0.447 s test-stopCheck ✓ 0.030 s test-stopCheck-file ✓ 2.573 s test-squash S - all_tests => False test-solver ✓ 18.958 s test-snb ✓ 0.271 s test-smooth ✓ 3.615 s test-slepc-solver S - slepc => False test-restarting ✓ 3.175 s test-restart-io_hdf5 S - all_tests => False test-restart-io ✓ 4.978 s test-region-iterator ✓ 1.299 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 4.508 s test-multigrid_laplace ✓ 591.720 s test-laplace ✓ 6.312 s test-io_hdf5 S - all_tests => False test-io ✓ 49.401 s test-invpar ✓ 20.374 s test-invertable-operator ✓ 1.506 s test-interpolate ✓ 6.009 s test-interchange-instability ✓ 15.727 s test-initial ✓ 22.042 s test-include S - all_tests => False test-gyro ✓ 2.621 s test-griddata ✓ 0.528 s test-griddata-yboundary-guards ✓ 13.086 s test-fieldgroupComm S - all_tests => False test-fieldgroup ✓ 1.438 s test-fieldfactory ✓ 2.914 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 20.080 s test-delp2 ✓ 98.804 s test-datadir S - all_tests => False test-cyclic ✓ 8.599 s test-coordinates-initialization ✓ 0.897 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 2.579 s test-collect S - all_tests => False test-code-style ✓ 0.067 s test-boutcore/simple-model ✓ 0.752 s test-boutcore/mms-ddz ✓ 0.359 s test-boutcore/legacy-model ✓ 0.666 s test-boutcore/collect ✓ 0.459 s test-boutcore/collect-staggered ✓ 0.443 s test-attribs S - all_tests => False ======= All tests passed in 911.27 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.013 s wave-1d-y ✓ 0.013 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.013 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.013 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.06 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 3.280 s wave-1d-y ✓ 3.271 s upwinding3 ✓ 1.637 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 7.161 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 8.938 s derivatives3 ✓ 1.190 s bracket ✓ 0.400 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 25.88 seconds ======= + popd ~/build/BUILD/BOUT++-v4.3.2 + '[' mpich = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/mpich/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/usr/lib64/mpich/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/mpich-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /usr/lib64/mpich/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/usr/lib64/mpich/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64 + eval unset 'LD_LIBRARY_PATH; unset' 'MPI_COMPILER; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' 'MPI_MAN; unset' 'MPI_PYTHON_SITEARCH; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_HOME; unset' 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' 'MPI_SUFFIX; unset' 'MPI_PYTHON2_SITEARCH; unset' '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ unset MPI_PYTHON2_SITEARCH ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + for mpi in mpich openmpi + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; LOADEDMODULES=; export LOADEDMODULES; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ LOADEDMODULES= ++++ export LOADEDMODULES ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module load mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64 + eval 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER; LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH; MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN; MANPATH=/usr/share/man/openmpi-x86_64:;' export 'MANPATH; MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE; _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_; LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES; MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi;' export 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1;' export 'MANPATH_modshare; MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH; MODULES_LMCONFLICT_modshare=mpi/openmpi-x86_64\&mpi:1;' export 'MODULES_LMCONFLICT_modshare; ~/build/BUILD/BOUT++-v4.3.2/build_openmpi ~/build/BUILD/BOUT++-v4.3.2 PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME; MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR; MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX; LD_LIBRARY_PATH_modshare=/usr/lib64/openmpi/lib:1;' export 'LD_LIBRARY_PATH_modshare; MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG; _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '_LMFILES__modshare; LOADEDMODULES_modshare=mpi/openmpi-x86_64:1;' export 'LOADEDMODULES_modshare; MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB; PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN; PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-x86_64: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi' ++ export MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:2:/usr/share/man/openmpi-x86_64:1 ++ export MANPATH_modshare ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.9/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MODULES_LMCONFLICT_modshare='mpi/openmpi-x86_64&mpi:1' ++ export MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/lib64/openmpi/lib/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ LD_LIBRARY_PATH_modshare=/usr/lib64/openmpi/lib:1 ++ export LD_LIBRARY_PATH_modshare ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ _LMFILES__modshare=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export _LMFILES__modshare ++ LOADEDMODULES_modshare=mpi/openmpi-x86_64:1 ++ export LOADEDMODULES_modshare ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ PATH_modshare=/usr/lib64/openmpi/bin:1:/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + export OMPI_MCA_rmaps_base_oversubscribe=yes + OMPI_MCA_rmaps_base_oversubscribe=yes + export BOUT_TEST_TIMEOUT=15m + BOUT_TEST_TIMEOUT=15m + pushd build_openmpi + make -j2 build-check make --no-print-directory -C tests/integrated make --no-print-directory -C tests/MMS Compiling wave.cxx Compiling test_yupdown.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_yupdown.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_yupdown.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_yupdown.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_yupdown Compiling testVec.cxx Linking wave In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from testVec.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling wave.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from ../../..//include/bout/physicsmodel.hxx:40, from wave.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking testVec Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking wave Compiling fci_mms.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from fci_mms.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fci_mms.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from fci_mms.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-twistshift Compiling test-twistshift.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-twistshift.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-twistshift.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking fci_mms Compiling diffusion.cxx In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../..//include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from diffusion.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../..//include/field.hxx:41, from ../../..//include/field3d.hxx:30, from ../../..//include/difops.hxx:39, from ../../..//include/bout.hxx:41, from diffusion.cxx:1: ../../..//include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../..//include/boutcomm.hxx:33, from ../../..//include/bout.hxx:39, from diffusion.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-twistshift Compiling fuu.cxx In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from fuu.hxx:4, from fuu.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from fuu.hxx:4, from fuu.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from fuu.hxx:4, from fuu.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Adding fuu.o to /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tests/integrated/test-subdir/fuu.a Compiling bar.cxx Linking cyto In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from bar.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../../include/field.hxx:41, from ../../../../include/field3d.hxx:30, from ../../../../include/difops.hxx:39, from ../../../../include/bout.hxx:41, from bar.cxx:1: ../../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../../include/boutcomm.hxx:33, from ../../../../include/bout.hxx:39, from bar.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_extras.cxx Adding bar.o to /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tests/integrated/test-subdir/bar.a Compiling subdirs.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from test_extras.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from test_extras.hxx:12, from test_extras.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from test_extras.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from subdirs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking subdirs Compiling sys/test_variant.cxx Compiling test_stopCheck.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_variant.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/sys/variant.hxx:26, from sys/test_variant.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_variant.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_utils.cxx In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_utils.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from sys/test_utils.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_utils.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_stopCheck.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_stopCheck.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_stopCheck.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_stopCheck Compiling test_solver.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_solver.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_type_name.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_type_name.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from sys/test_type_name.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_type_name.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_timer.cxx Linking test_solver Compiling sys/test_range.cxx Compiling test_snb.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/field3d.hxx:30, from ../../../include/invert_parderiv.hxx:34, from ../../../include/bout/snb.hxx:1, from test_snb.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_output.cxx Linking test_snb Compiling test_smooth.cxx Compiling sys/test_optionsreader.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_smooth.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_smooth.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_smooth.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_optionsreader.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_optionsreader.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_smooth Compiling test_restarting.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_restarting.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_restarting Compiling sys/test_options_netcdf.cxx Compiling test-restart-io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test-restart-io.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_netcdf.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_netcdf.cxx:7: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_netcdf.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-restart-io Compiling test_region_iterator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_region_iterator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_region_iterator.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_region_iterator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_options_fields.cxx Linking test_region_iterator In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_fields.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from sys/test_options_fields.cxx:6: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options_fields.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_naulin_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_naulin_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_naulin_laplace.cxx:26: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_naulin_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_naulin_laplace Compiling test_multigrid_laplace.cxx Compiling sys/test_options.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_multigrid_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_multigrid_laplace.cxx:26: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_multigrid_laplace.cxx:26: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_options.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_options.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_multigrid_laplace Compiling test_laplace.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_laplace.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_laplace.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_laplace.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ test_laplace.cxx: In function 'int main(int, char**)': test_laplace.cxx:23:42: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 23 | Field3D flag0 = invert_laplace(input, 0); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:24:42: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 24 | Field3D flag3 = invert_laplace(input, 3); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:27:47: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 27 | Field3D flag0a = invert_laplace(input, 0, &a); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:28:47: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 28 | Field3D flag3a = invert_laplace(input, 3, &a); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:31:52: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 31 | Field3D flag0ac = invert_laplace(input, 0, &a, &c); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:32:52: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 32 | Field3D flag3ac = invert_laplace(input, 3, &a, &c); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:35:61: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 35 | Field3D flag0ad = invert_laplace(input, 0, &a, nullptr, &d); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:36:61: warning: 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)' is deprecated [-Wdeprecated-declarations] 36 | Field3D flag3ad = invert_laplace(input, 3, &a, nullptr, &d); | ^ In file included from ../../../include/bout_types.hxx:25, from ../../../include/datafile.hxx:17, from ../../../include/bout.hxx:40, from test_laplace.cxx:6: ../../../include/invert_laplace.hxx:284:26: note: declared here 284 | DEPRECATED(const Field3D invert_laplace(const Field3D &b, int flags, const Field2D *a = nullptr, | ^~~~~~~~~~~~~~ ../../../include/bout/deprecated.hxx:18:55: note: in definition of macro 'DEPRECATED' 18 | #define DEPRECATED(func) __attribute__ ((deprecated)) func | ^~~~ test_laplace.cxx:45:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 45 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:47:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 47 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:52:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 52 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:54:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 54 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:59:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 59 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:61:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 61 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:67:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 67 | lap->setFlags(4096); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ test_laplace.cxx:69:21: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] 69 | lap->setFlags(8192); | ^ In file included from test_laplace.cxx:7: ../../../include/invert_laplace.hxx:189:16: note: declared here 189 | virtual void setFlags(int f); | ^~~~~~~~ Linking test_laplace Compiling test_io.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_io.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_io.cxx:10: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_io.cxx:10: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_io Compiling sys/test_msg_stack.cxx Compiling test_invpar.cxx In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_msg_stack.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_msg_stack.cxx:4: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_invpar.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_invpar.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_invpar.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:390, from sys/test_msg_stack.cxx:4: sys/test_msg_stack.cxx: In member function 'virtual void MsgStackTest_SetPointTest_Test::TestBody()': sys/test_msg_stack.cxx:77:34: warning: 'int MsgStack::setPoint()' is deprecated: Please use `MsgStack::push` with an empty message instead [-Wdeprecated-declarations] 77 | EXPECT_EQ(msg_stack.setPoint(), i); | ^ In file included from sys/test_msg_stack.cxx:5: ../../include/msg_stack.hxx:76:7: note: declared here 76 | int setPoint(); ///< get a message point | ^~~~~~~~ Compiling sys/test_expressionparser.cxx Linking test_invpar In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_expressionparser.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_expressionparser.cxx:6: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_expressionparser.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invertable_operator.cxx In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../../include/field.hxx:34, from ../../../include/fieldperp.hxx:31, from ../../../include/invert_laplace.hxx:41, from invertable_operator.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling sys/test_boutexception.cxx Linking invertable_operator In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from sys/test_boutexception.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from sys/test_boutexception.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_interpolate.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_interpolate.cxx:13: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_interpolate.cxx:13: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_interpolate.cxx:13: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling src/test_bout++.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from src/test_bout++.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/difops.hxx:39, from ../../include/bout.hxx:41, from src/test_bout++.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from src/test_bout++.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_interpolate Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solverfactory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from solver/test_solverfactory.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solverfactory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling test_gyro.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_gyro.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_gyro.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_gyro.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_solver.cxx Linking test_gyro Compiling test_griddata.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from solver/test_solver.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_solver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_griddata.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_griddata.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_griddata.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_griddata Compiling test_fieldfactory.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_fieldfactory.cxx:8: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_fieldfactory.cxx:8: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_fieldfactory.cxx:8: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_fieldfactory Compiling 2fluid.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from 2fluid.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from 2fluid.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling solver/test_fakesolver.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_fakesolver.hxx:4, from solver/test_fakesolver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from ../../include/bout/solver.hxx:42, from solver/test_fakesolver.hxx:6, from solver/test_fakesolver.cxx:1: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from solver/test_fakesolver.hxx:4, from solver/test_fakesolver.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking 2fluid Compiling mesh/test_paralleltransform.cxx Compiling test_delp2.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/test_paralleltransform.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_paralleltransform.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from ../../../include/bout/physicsmodel.hxx:40, from test_delp2.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_delp2 Compiling mesh/test_mesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_mesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_mesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_mesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling test_cyclic.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_cyclic.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test_cyclic.cxx:6: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test_cyclic.cxx:6: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test_cyclic Compiling mesh/test_interpolation.cxx Compiling test-coordinates-initialization.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_interpolation.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from mesh/test_interpolation.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_interpolation.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-coordinates-initialization.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from test-coordinates-initialization.cxx:5: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from test-coordinates-initialization.cxx:5: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking test-coordinates-initialization Compiling command-args.cxx In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from command-args.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../../include/field.hxx:41, from ../../../include/field3d.hxx:30, from ../../../include/difops.hxx:39, from ../../../include/bout.hxx:41, from command-args.cxx:2: ../../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ios:39, from /usr/include/c++/11/ostream:38, from /usr/include/c++/11/iostream:39, from /usr/include/openmpi-x86_64/openmpi/ompi/mpi/cxx/mpicxx.h:57, from /usr/include/openmpi-x86_64/mpi.h:2887, from ../../../include/boutcomm.hxx:33, from ../../../include/bout.hxx:39, from command-args.cxx:2: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Linking command-args Compiling mesh/test_coordinates.cxx Compiling mesh/test_boutmesh.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boutmesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/../src/mesh/impls/bout/boutmesh.hxx:7, from mesh/test_boutmesh.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boutmesh.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_coordinates.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/bout/paralleltransform.hxx:10, from ../../include/bout/coordinates.hxx:36, from mesh/test_coordinates.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_coordinates.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/test_boundary_factory.cxx Compiling mesh/parallel/test_shiftedmetric.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from ../../include/boundary_op.hxx:9, from ../../include/boundary_factory.hxx:7, from mesh/test_boundary_factory.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/test_boundary_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/parallel/test_shiftedmetric.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from mesh/parallel/test_shiftedmetric.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/parallel/test_shiftedmetric.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling mesh/data/test_gridfromoptions.cxx In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/options.hxx:45, from mesh/data/test_gridfromoptions.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from mesh/data/test_gridfromoptions.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling invert/test_fft.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from invert/test_fft.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from invert/test_fft.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from invert/test_fft.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from invert/test_fft.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_mask.cxx Compiling include/test_interpolation_factory.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_mask.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ../../include/mask.hxx:27, from include/test_mask.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_mask.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from ../../include/interpolation.hxx:31, from include/test_interpolation_factory.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_interpolation_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/test_derivs.cxx Compiling include/test_cyclic_reduction.cxx In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from include/test_derivs.cxx:5: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_derivs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field3d.hxx:30, from include/test_derivs.cxx:5: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_derivs.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/cyclic_reduction.hxx:46, from include/test_cyclic_reduction.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/test_cyclic_reduction.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_traits.cxx In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_traits.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from include/bout/test_traits.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_traits.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_template_combinations.cxx Compiling include/bout/test_region.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_region.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from include/bout/test_region.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_region.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_monitor.cxx In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_monitor.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/utils.hxx:38, from ../../include/bout/monitor.hxx:6, from include/bout/test_monitor.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_monitor.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_macro_for_each.cxx Compiling include/bout/test_generic_factory.cxx Compiling include/bout/test_deriv_store.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from include/bout/test_deriv_store.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from include/bout/test_deriv_store.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling include/bout/test_assert.cxx Compiling include/bout/test_array.cxx Compiling field/test_where.cxx In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_where.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field/test_where.cxx:3: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_where.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector3d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector3d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector3d.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector3d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_vector2d.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector2d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_vector2d.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_vector2d.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_initialprofiles.cxx In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_initialprofiles.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from field/test_initialprofiles.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_initialprofiles.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_fieldperp.cxx field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_fieldperp.cxx:445:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 445 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:445:19: note: use reference type to prevent copying 445 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_fieldperp.cxx:487:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 487 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:487:19: note: use reference type to prevent copying 487 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_fieldperp.cxx:529:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 529 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:529:19: note: use reference type to prevent copying 529 | for (const auto index : test_indices) { | ^~~~~ | & field/test_fieldperp.cxx: In member function 'virtual void FieldPerpTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_fieldperp.cxx:575:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 575 | for (const auto index : test_indices) { | ^~~~~ field/test_fieldperp.cxx:575:19: note: use reference type to prevent copying 575 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_fieldgroup.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_fieldgroup.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from ./test_extras.hxx:12, from field/test_fieldgroup.cxx:2: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_fieldgroup.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field_factory.cxx In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/field.hxx:41, from ../../include/field2d.hxx:34, from field/test_field_factory.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field_factory.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling field/test_field3d.cxx field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOX_Test::TestBody()': field/test_field3d.cxx:549:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 549 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:549:19: note: use reference type to prevent copying 549 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOY_Test::TestBody()': field/test_field3d.cxx:598:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 598 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:598:19: note: use reference type to prevent copying 598 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOZ_Test::TestBody()': field/test_field3d.cxx:652:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 652 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:652:19: note: use reference type to prevent copying 652 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field3d.cxx:701:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 701 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:701:19: note: use reference type to prevent copying 701 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field3d.cxx:749:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 749 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:749:19: note: use reference type to prevent copying 749 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field3d.cxx:795:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 795 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:795:19: note: use reference type to prevent copying 795 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field3d.cxx: In member function 'virtual void Field3DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field3d.cxx:847:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 847 | for (const auto index : test_indices) { | ^~~~~ field/test_field3d.cxx:847:19: note: use reference type to prevent copying 847 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_field2d.cxx field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_XGUARDS_Test::TestBody()': field/test_field2d.cxx:538:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 538 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:538:19: note: use reference type to prevent copying 538 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_YGUARDS_Test::TestBody()': field/test_field2d.cxx:581:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 581 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:581:19: note: use reference type to prevent copying 581 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_ZGUARDS_Test::TestBody()': field/test_field2d.cxx:623:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 623 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:623:19: note: use reference type to prevent copying 623 | for (const auto index : test_indices) { | ^~~~~ | & field/test_field2d.cxx: In member function 'virtual void Field2DTest_IterateOverRGN_NOCORNERS_Test::TestBody()': field/test_field2d.cxx:668:19: warning: loop variable 'index' creates a copy from type 'const std::vector' [-Wrange-loop-construct] 668 | for (const auto index : test_indices) { | ^~~~~ field/test_field2d.cxx:668:19: note: use reference type to prevent copying 668 | for (const auto index : test_indices) { | ^~~~~ | & Compiling field/test_field.cxx In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx: In destructor 'MsgStackItem::~MsgStackItem()': ../../include/msg_stack.hxx:147:15: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ In file included from ../../include/bout/scorepwrapper.hxx:5, from ../../include/bout/deriv_store.hxx:37, from ../../include/bout/mesh.hxx:49, from field/test_field.cxx:4: ../../include/msg_stack.hxx:147:34: warning: 'bool std::uncaught_exception()' is deprecated [-Wdeprecated-declarations] 147 | if (!std::uncaught_exception()) { | ^ In file included from /usr/include/c++/11/ext/concurrence.h:34, from /usr/include/c++/11/bits/shared_ptr_base.h:62, from /usr/include/c++/11/bits/shared_ptr.h:53, from /usr/include/c++/11/memory:77, from ../../externalpackages/googletest/googletest/include/gtest/gtest.h:57, from field/test_field.cxx:1: /usr/include/c++/11/exception:106:8: note: declared here 106 | bool uncaught_exception() _GLIBCXX_USE_NOEXCEPT __attribute__ ((__pure__)); | ^~~~~~~~~~~~~~~~~~ Compiling gtest-all.o Compiling bout_test_main.o Linking bout_test_main.a Linking tests /usr/bin/ld: /tmp/cceL968t.ltrans3.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' + SEGFAULT_SIGNALS=segv + LD_PRELOAD=/usr/lib64/libSegFault.so + make check Linking tests /usr/bin/ld: /tmp/ccrZcEbP.ltrans3.ltrans.o: in function `OutputTest::OutputTest() [clone .lto_priv.0]': /builddir/build/BUILD/BOUT++-v4.3.2/build_openmpi/tests/unit/sys/test_output.cxx:11: warning: the use of `tmpnam' is dangerous, better use `mkstemp' Running unit test Running main() from bout_test_main.cxx [==========] Running 1510 tests from 104 test suites. [----------] Global test environment set-up. [----------] 2 tests from ParseCommandLineArgsDeathTest [----------] 2 tests from ParseCommandLineArgsDeathTest (8 ms total) [----------] 1 test from SignalHandlerTestDeathTest (615 ms total) [----------] 10 tests from FieldTest (2 ms total) [----------] 78 tests from Field2DTest (514 ms total) [----------] 126 tests from Field3DTest (35 ms total) [----------] 47 tests from FieldFactoryCreationTest/0 (12 ms total) [----------] 47 tests from FieldFactoryCreationTest/1 (12 ms total) [----------] 28 tests from FieldFactoryTest (8 ms total) [----------] 6 tests from FieldFactoryCreateAndTransformTest (1 ms total) [----------] 26 tests from FieldGroupTest (1 ms total) [----------] 96 tests from FieldPerpTest (21 ms total) [----------] 10 tests from InitialProfileTest (3 ms total) [ RUN ] Vector2DTest.ApplyBoundaryString Option input:transform_from_field_aligned = 1 (default) [----------] 46 tests from Vector2DTest (7 ms total) [----------] 49 tests from Vector3DTest (9 ms total) [----------] 10 tests from WhereTest (2 ms total) [----------] 12 tests from ArrayTest (0 ms total) [----------] 4 tests from AssertTest (1 ms total) [----------] 25 tests from DerivativeStoreTest (9 ms total) [----------] 6 tests from GenericFactory (0 ms total) [----------] 3 tests from MacroForEachTest (0 ms total) [----------] 3 tests from MacroForEachFnTest (0 ms total) [----------] 2 tests from MonitorTest (1 ms total) [----------] 33 tests from RegionTest (6 ms total) [----------] 6 tests from RegionIndexConversionTest (0 ms total) [----------] 2 tests from RegionIndex2DTest (1 ms total) [----------] 2 tests from RegionIndex3DTest (0 ms total) [----------] 21 tests from RegionIndexTest/0 (0 ms total) [----------] 21 tests from RegionIndexTest/1 (0 ms total) [----------] 21 tests from RegionIndexTest/2 (0 ms total) [----------] 23 tests from FieldIndexTest/0 (1 ms total) [----------] 23 tests from FieldIndexTest/1 (0 ms total) [----------] 48 tests from IndexOffsetTest (3 ms total) [----------] 5 tests from TemplateCombinationsTest (0 ms total) [----------] 6 tests from BoutTraitsTest (0 ms total) [----------] 3 tests from CyclicReduction (1 ms total) [----------] 9 tests from InterpolationFactoryTest (2 ms total) [----------] 11 tests from MaskTest (3 ms total) [----------] 34 tests from GridFromOptionsTest (131 ms total) [----------] 9 tests from ShiftedMetricTest (1 ms total) [----------] 5 tests from BoundaryFactoryTest (0 ms total) [----------] 2 tests from BoutMeshTest (5 ms total) [----------] 4 tests from CoordinatesTest (1 ms total) [----------] 16 tests from Field3DInterpToTest (0 ms total) [----------] 8 tests from Field2DInterpToTest (0 ms total) [----------] 24 tests from MeshTest (2 ms total) [----------] 6 tests from ParallelTransformTest (1 ms total) [----------] 46 tests from SolverTest (17 ms total) [----------] 12 tests from SolverFactoryTest (1 ms total) [----------] 20 tests from ParseCommandLineArgs (0 ms total) [----------] 3 tests from PrintStartupTest (0 ms total) [----------] 4 tests from BoutInitialiseFunctions (1 ms total) [----------] 3 tests from BoutExceptionTest (2598 ms total) [----------] 1 test from BoutRhsFailTest (0 ms total) [----------] 2 tests from BoutParallelRhsFailTest (1 ms total) [----------] 1 test from BoutIterationFailTest (0 ms total) [----------] 29 tests from ExpressionParserTest (1 ms total) [----------] 1 test from ParseExceptionTest (0 ms total) [----------] 11 tests from MsgStackTest (1 ms total) [----------] 95 tests from OptionsTest (20 ms total) [----------] 12 tests from OptionsFieldTest (2 ms total) [----------] 12 tests from OptionsNetCDFTest (22 ms total) [----------] 20 tests from OptionsReaderTest (3 ms total) [----------] 20 tests from OutputTest (1 ms total) [----------] 25 tests from RangeTest (0 ms total) [----------] 10 tests from TimerTest (17 ms total) [----------] 6 tests from TypeNameTest (0 ms total) [----------] 14 tests from MatrixTest (1 ms total) [----------] 14 tests from TensorTest (1 ms total) [----------] 4 tests from Invert3x3Test (0 ms total) [----------] 13 tests from NumberUtilitiesTest (1 ms total) [----------] 18 tests from StringUtilitiesTest (0 ms total) [----------] 4 tests from FunctionTraitsTest (0 ms total) [----------] 3 tests from VariantTest (0 ms total) [----------] 5 tests from FirstX/DerivativesTest (3 ms total) [----------] 5 tests from FirstY/DerivativesTest (3 ms total) [----------] 6 tests from FirstZ/DerivativesTest (5 ms total) [----------] 2 tests from SecondX/DerivativesTest (1 ms total) [----------] 2 tests from SecondY/DerivativesTest (0 ms total) [----------] 3 tests from SecondZ/DerivativesTest (2 ms total) [----------] 1 test from FourthX/DerivativesTest (0 ms total) [----------] 1 test from FourthY/DerivativesTest (0 ms total) [----------] 1 test from FourthZ/DerivativesTest (1 ms total) [----------] 6 tests from UpwindX/DerivativesTestAdvection (2 ms total) [----------] 6 tests from UpwindY/DerivativesTestAdvection (2 ms total) [----------] 6 tests from UpwindZ/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxX/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxY/DerivativesTestAdvection (2 ms total) [----------] 5 tests from FluxZ/DerivativesTestAdvection (2 ms total) [----------] 5 tests from X/FirstDerivativesInterfaceTest (1 ms total) [----------] 5 tests from FirstY/FirstDerivativesInterfaceTest (1 ms total) [----------] 6 tests from FirstZ/FirstDerivativesInterfaceTest (2 ms total) [----------] 2 tests from X/SecondDerivativesInterfaceTest (0 ms total) [----------] 2 tests from Y/SecondDerivativesInterfaceTest (1 ms total) [----------] 3 tests from Z/SecondDerivativesInterfaceTest (1 ms total) [----------] 1 test from X/FourthDerivativesInterfaceTest (0 ms total) [----------] 1 test from Y/FourthDerivativesInterfaceTest (1 ms total) [----------] 1 test from Z/FourthDerivativesInterfaceTest (0 ms total) [----------] 6 tests from X/UpwindDerivativesInterfaceTest (2 ms total) [----------] 6 tests from Y/UpwindDerivativesInterfaceTest (2 ms total) [----------] 6 tests from Z/UpwindDerivativesInterfaceTest (2 ms total) [----------] 5 tests from X/FluxDerivativesInterfaceTest (2 ms total) [----------] 5 tests from Y/FluxDerivativesInterfaceTest (1 ms total) [----------] 5 tests from Z/FluxDerivativesInterfaceTest (2 ms total) [----------] 10 tests from FFTEvenAndOddSamples/FFTTest (1 ms total) [==========] 1510 tests from 104 test suites ran. (4159 ms total) [ PASSED ] 1510 tests. ======= Making 53 integrated tests ======== test-yupdown ✓ 0.013 s test-vec ✓ 0.013 s test-twistshift ✓ 0.013 s test-twistshift-staggered ✓ 0.013 s test-subdir ✓ 0.033 s test-stopCheck ✓ 0.013 s test-stopCheck-file ✓ 0.013 s test-squash S - all_tests => False test-solver ✓ 0.013 s test-snb ✓ 0.013 s test-smooth ✓ 0.013 s test-slepc-solver S - slepc => False test-restarting ✓ 0.013 s test-restart-io_hdf5 S - all_tests => False test-restart-io ✓ 0.013 s test-region-iterator ✓ 0.013 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 0.013 s test-multigrid_laplace ✓ 0.013 s test-laplace ✓ 0.013 s test-io_hdf5 S - all_tests => False test-io ✓ 0.013 s test-invpar ✓ 0.013 s test-invertable-operator ✓ 0.013 s test-interpolate ✓ 0.013 s test-interchange-instability ✓ 0.013 s test-initial S - not make => False test-include S - all_tests => False test-gyro ✓ 0.013 s test-griddata ✓ 0.013 s test-griddata-yboundary-guards ✓ 0.013 s test-fieldgroupComm S - all_tests => False test-fieldgroup S - not make => False test-fieldfactory ✓ 0.013 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 0.013 s test-delp2 ✓ 0.013 s test-datadir S - all_tests => False test-cyclic ✓ 0.013 s test-coordinates-initialization ✓ 0.013 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 0.013 s test-collect S - all_tests => False test-code-style S - not make => False test-boutcore/simple-model S - not make => False test-boutcore/mms-ddz S - not make => False test-boutcore/legacy-model S - not make => False test-boutcore/collect S - not make => False test-boutcore/collect-staggered S - not make => False test-attribs S - all_tests => False ======= All tests passed in 0.43 seconds ======= ======= Running 53 integrated tests ======== test-yupdown ✓ 1.109 s test-vec ✓ 2.163 s test-twistshift ✓ 1.084 s test-twistshift-staggered ✓ 1.073 s test-subdir ✓ 0.983 s test-stopCheck ✓ 0.032 s test-stopCheck-file ✓ 6.766 s test-squash S - all_tests => False test-solver ✓ 19.521 s test-snb ✓ 0.815 s test-smooth ✓ 5.285 s test-slepc-solver S - slepc => False test-restarting ✓ 5.881 s test-restart-io_hdf5 S - all_tests => False test-restart-io ✓ 6.391 s test-region-iterator ✓ 2.377 s test-petsc_laplace_MAST-grid S - all_tests => False test-petsc_laplace S - all_tests => False test-options-netcdf S - False => False test-naulin-laplace ✓ 4.339 s test-multigrid_laplace ✓ 7.653 s test-laplace ✓ 8.607 s test-io_hdf5 S - all_tests => False test-io ✓ 57.611 s test-invpar ✓ 30.928 s test-invertable-operator ✓ 2.521 s test-interpolate ✓ 12.411 s test-interchange-instability ✓ 17.221 s test-initial ✓ 25.287 s test-include S - all_tests => False test-gyro ✓ 3.909 s test-griddata ✓ 1.068 s test-griddata-yboundary-guards ✓ 13.262 s test-fieldgroupComm S - all_tests => False test-fieldgroup ✓ 1.368 s test-fieldfactory ✓ 4.097 s test-drift-instability S - all_tests => False test-drift-instability-staggered ✓ 21.821 s test-delp2 ✓ 25.091 s test-datadir S - all_tests => False test-cyclic ✓ 13.877 s test-coordinates-initialization ✓ 0.862 s test-compile-examples S - all_tests => False test-compile-examples-petsc S - all_tests => False test-command-args ✓ 8.054 s test-collect S - all_tests => False test-code-style ✓ 0.067 s test-boutcore/simple-model ✓ 1.300 s test-boutcore/mms-ddz ✓ 0.895 s test-boutcore/legacy-model ✓ 1.206 s test-boutcore/collect ✓ 0.995 s test-boutcore/collect-staggered ✓ 0.987 s test-attribs S - all_tests => False ======= All tests passed in 318.94 seconds ======= ======= Making 21 MMS tests ======== wave-1d ✓ 0.013 s wave-1d-y ✓ 0.013 s upwinding3 S - not make => False time S - all_tests => False time-petsc S - not make => False spatial/fci ✓ 0.013 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 0.013 s derivatives3 S - not make => False bracket S - not make => False advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 0.06 seconds ======= ======= Running 21 MMS tests ======== wave-1d ✓ 6.498 s wave-1d-y ✓ 6.520 s upwinding3 ✓ 2.194 s time S - all_tests => False time-petsc S - all_tests => False spatial/fci ✓ 12.916 s spatial/diffusion S - all_tests => False spatial/d2dz2 S - all_tests => False spatial/d2dx2 S - all_tests => False spatial/advection S - all_tests => False laplace S - all_tests => False hw S - all_tests => False diffusion2 S - all_tests => False diffusion ✓ 21.437 s derivatives3 ✓ 1.646 s bracket ✓ 0.945 s advection S - all_tests => False advection/weno3 S - all_tests => False advection/upwind S - all_tests => False advection/central S - all_tests => False advection/arakawa S - all_tests => False ======= All tests passed in 52.16 seconds ======= + popd ~/build/BUILD/BOUT++-v4.3.2 + '[' openmpi = mpich ']' + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=' ' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo x +++ '[' -n x ']' ++++ eval 'echo ${LD_LIBRARY_PATH}' +++++ echo /usr/lib64/openmpi/lib +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' ' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ++++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH_modquar=/usr/lib64/openmpi/lib +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode='module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=' ' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval 'module() { unset _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '\''1'\'' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='\''vx'\'' ;; *v*) set +v; _mlshdbg='\''v'\'' ;; *x*) set +x; _mlshdbg='\''x'\'' ;; *) _mlshdbg='\'''\'' ;; esac; fi; unset _mlre _mlIFS; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS='\'' '\''; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval '\''echo ${'\''$_mlv'\''+x}'\''`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='\''`eval '\''echo ${'\''$_mlv'\''}'\''`'\'' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='\''`eval '\''echo ${'\''$_mlrv'\'':-}'\''`'\'' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre} /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '\''"$@"'\''`; else eval `/usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; unset _mlre _mlv _mlrv _mlIFS; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlshdbg; return $_mlstatus; }; ml() { module ml "$@"; }; MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD; MODULESHOME=/usr/share/Modules; export MODULESHOME; test 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' 0 = 1 ']' +++ '[' /bin/sh '!=' '' ']' +++ '[' -t 2 ']' +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ '[' /bin/sh '!=' '' ']' +++ export -f switchml +++ case ":$PATH:" in +++ '[' '!' -n x ']' +++ case ":`manpath 2>/dev/null`:" in ++++ manpath +++ unset _mlcode _mlret +++ '[' -n '' ']' + module unload mpi/openmpi-x86_64 + unset _mlshdbg + '[' 0 = 1 ']' + unset _mlre _mlIFS + '[' -n x ']' + _mlIFS=' ' + IFS=' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH -a LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++ eval 'echo ${LD_LIBRARY_PATH+x}' +++ echo x + '[' -n x ']' ++ eval 'echo ${LD_LIBRARY_PATH}' +++ echo /usr/lib64/openmpi/lib + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' ' + _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' ' + for _mlv in ${MODULES_RUN_QUARANTINE:-} + '[' LD_PRELOAD = LD_PRELOAD -a LD_PRELOAD = LD_PRELOAD ']' ++ eval 'echo ${LD_PRELOAD+x}' +++ echo + '[' -n '' ']' + _mlrv=MODULES_RUNENV_LD_PRELOAD ++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++ echo + _mlre='LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' + '[' -n 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' ++ eval 'LD_LIBRARY_PATH_modquar='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh '"$@"' +++ LD_LIBRARY_PATH_modquar=/usr/lib64/openmpi/lib +++ LD_LIBRARY_PATH= +++ LD_PRELOAD= +++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64 + eval unset 'MPI_COMPILER; unset' 'LD_LIBRARY_PATH; unset' 'MPI_MAN; MANPATH=;' export 'MANPATH; unset' 'MPI_INCLUDE; unset' '_LMFILES_; unset' 'LOADEDMODULES; unset' 'MODULES_LMCONFLICT; PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH; MANPATH_modshare=:1;' export 'MANPATH_modshare; unset' 'MPI_PYTHON3_SITEARCH; unset' 'MODULES_LMCONFLICT_modshare; PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1;' export 'PKG_CONFIG_PATH_modshare; unset' 'MPI_HOME; unset' 'MPI_FORTRAN_MOD_DIR; unset' 'MPI_SUFFIX; unset' 'LD_LIBRARY_PATH_modshare; unset' 'MPI_SYSCONFIG; unset' '_LMFILES__modshare; unset' 'LOADEDMODULES_modshare; unset' 'MPI_LIB; PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH; unset' 'MPI_BIN; PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1;' export 'PATH_modshare; test' '0;' Processing files: bout++-mpich-4.3.2-4.fc34.x86_64 ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH= ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset MODULES_LMCONFLICT ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MANPATH_modshare=:1 ++ export MANPATH_modshare ++ unset MPI_PYTHON3_SITEARCH ++ unset MODULES_LMCONFLICT_modshare ++ PKG_CONFIG_PATH_modshare=:1:/usr/lib64/pkgconfig:1:/usr/share/pkgconfig:1 ++ export PKG_CONFIG_PATH_modshare ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_SUFFIX ++ unset LD_LIBRARY_PATH_modshare ++ unset MPI_SYSCONFIG ++ unset _LMFILES__modshare ++ unset LOADEDMODULES_modshare ++ unset MPI_LIB ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ unset MPI_BIN ++ PATH_modshare=/bin:1:/usr/sbin:1:/usr/bin:1:/builddir/.local/bin:1:/builddir/bin:1:/usr/local/sbin:1:/usr/share/Modules/bin:1:/sbin:1 ++ export PATH_modshare ++ test 0 + _mlstatus=0 + '[' -n x ']' + IFS=' ' + unset _mlre _mlv _mlrv _mlIFS + '[' -n '' ']' + unset _mlshdbg + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.k4cvPm + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Z8rafz + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-mpich + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-mpich + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-mpich = 4.3.2-4.fc34 bout++-mpich(x86-64) = 4.3.2-4.fc34 bundled(libpvode) libbout++.so.4.3.1()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libmpicxx.so.12()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules Processing files: bout++-mpich-devel-4.3.2-4.fc34.x86_64 Provides: bout++-mpich-devel = 4.3.2-4.fc34 bout++-mpich-devel(x86-64) = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.3.1()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel Processing files: python3-bout++-mpich-4.3.2-4.fc34.x86_64 Provides: python-bout++-mpich = 4.3.2-4.fc34 python3-bout++-mpich = 4.3.2-4.fc34 python3-bout++-mpich(x86-64) = 4.3.2-4.fc34 python3.9-bout++-mpich = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.103()(64bit)(mpich-x86_64) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libnetcdf.so.15()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.14()(64bit)(mpich-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(mpich-x86_64) libsundials_cvode.so.5()(64bit)(mpich-x86_64) libsundials_ida.so.5()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.5()(64bit)(mpich-x86_64) python(abi) = 3.9 rtld(GNU_HASH) Obsoletes: python-bout++-mpich < 4.3.2-4.fc34 Processing files: bout++-openmpi-4.3.2-4.fc34.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8p3CyA + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2X03GB + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-openmpi + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-openmpi + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/bout++-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: bout++-openmpi = 4.3.2-4.fc34 bout++-openmpi(x86-64) = 4.3.2-4.fc34 bundled(libpvode) libbout++.so.4.3.1()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Recommends: environment-modules Processing files: bout++-openmpi-devel-4.3.2-4.fc34.x86_64 Provides: bout++-openmpi-devel = 4.3.2-4.fc34 bout++-openmpi-devel(x86-64) = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libbout++.so.4.3.1()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel Processing files: python3-bout++-openmpi-4.3.2-4.fc34.x86_64 Provides: python-bout++-openmpi = 4.3.2-4.fc34 python3-bout++-openmpi = 4.3.2-4.fc34 python3-bout++-openmpi(x86-64) = 4.3.2-4.fc34 python3.9-bout++-openmpi = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.4)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.103()(64bit)(openmpi-x86_64) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.15()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.14()(64bit)(openmpi-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.4()(64bit)(openmpi-x86_64) libsundials_cvode.so.5()(64bit)(openmpi-x86_64) libsundials_ida.so.5()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.5()(64bit)(openmpi-x86_64) python(abi) = 3.9 rtld(GNU_HASH) Obsoletes: python-bout++-openmpi < 4.3.2-4.fc34 Processing files: bout++-common-4.3.2-4.fc34.x86_64 Provides: bout++-common = 4.3.2-4.fc34 bout++-common(x86-64) = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-bout++-4.3.2-4.fc34.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VtD754 + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + DOCDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + cp -pr README.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.bib /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + cp -pr CITATION.cff /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + cp -pr CHANGELOG.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + cp -pr CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/doc/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.luLrfA + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + LICENSEDIR=/builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/python3-bout++ + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/python3-bout++ + cp -pr LICENSE.GPL /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64/usr/share/licenses/python3-bout++ + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-bout++ = 4.3.2-4.fc34 python-bout_runners = 4.3.2-4.fc34 python-boutdata = 4.3.2-4.fc34 python-boututils = 4.3.2-4.fc34 python-zoidberg = 4.3.2-4.fc34 python3-bout++ = 4.3.2-4.fc34 python3-bout_runners python3-boutdata python3-boututils python3-zoidberg python3.9-bout++ = 4.3.2-4.fc34 python3.9-bout_runners = 4.3.2-4.fc34 python3.9-boutdata = 4.3.2-4.fc34 python3.9-boututils = 4.3.2-4.fc34 python3.9-zoidberg = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.9 Obsoletes: python-bout++ < 4.3.2-4.fc34 python-bout_runners < 4.3.2-4.fc34 python-boutdata < 4.3.2-4.fc34 python-boututils < 4.3.2-4.fc34 python-zoidberg < 4.3.2-4.fc34 Recommends: python3-matplotlib python3-scipy Processing files: bout++-doc-4.3.2-4.fc34.noarch Provides: bout++-doc = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debugsource-4.3.2-4.fc34.x86_64 Provides: bout++-debugsource = 4.3.2-4.fc34 bout++-debugsource(x86-64) = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bout++-debuginfo-4.3.2-4.fc34.x86_64 Provides: bout++-debuginfo = 4.3.2-4.fc34 bout++-debuginfo(x86-64) = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.3.2-4.fc34 Processing files: bout++-mpich-debuginfo-4.3.2-4.fc34.x86_64 Provides: bout++-mpich-debuginfo = 4.3.2-4.fc34 bout++-mpich-debuginfo(x86-64) = 4.3.2-4.fc34 debuginfo(build-id) = 1cd1f50477f3d48eee28715c57991e25d0e86b05 debuginfo(build-id) = 44bbe8bbe034c6ced637bba7c3a26ae24a7d0d72 debuginfo(build-id) = be9ed6d113341bcd65c6af492704aa9813a9fa3d Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.3.2-4.fc34 Processing files: python3-bout++-mpich-debuginfo-4.3.2-4.fc34.x86_64 Provides: debuginfo(build-id) = bfc2121bd075349e22de391e7e69233196aa3cec python-bout++-mpich-debuginfo = 4.3.2-4.fc34 python3-bout++-mpich-debuginfo = 4.3.2-4.fc34 python3-bout++-mpich-debuginfo(x86-64) = 4.3.2-4.fc34 python3.9-bout++-mpich-debuginfo = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.3.2-4.fc34 Processing files: bout++-openmpi-debuginfo-4.3.2-4.fc34.x86_64 Provides: bout++-openmpi-debuginfo = 4.3.2-4.fc34 bout++-openmpi-debuginfo(x86-64) = 4.3.2-4.fc34 debuginfo(build-id) = 03d96ffc99f57548d6dc8ae7f241ca6e1c98b36e debuginfo(build-id) = 3f948c32c16770856777dccc99c32e7187f1d2ca debuginfo(build-id) = cec127a7d69a86b1ce99abe5a7a6515fb9b0d963 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.3.2-4.fc34 Processing files: python3-bout++-openmpi-debuginfo-4.3.2-4.fc34.x86_64 Provides: debuginfo(build-id) = 12b52740fabb9a5fb0f465d35db44bccd5de979a python-bout++-openmpi-debuginfo = 4.3.2-4.fc34 python3-bout++-openmpi-debuginfo = 4.3.2-4.fc34 python3-bout++-openmpi-debuginfo(x86-64) = 4.3.2-4.fc34 python3.9-bout++-openmpi-debuginfo = 4.3.2-4.fc34 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bout++-debugsource(x86-64) = 4.3.2-4.fc34 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debugsource-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-doc-4.3.2-4.fc34.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-openmpi-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-debuginfo-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-mpich-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/python3-bout++-4.3.2-4.fc34.noarch.rpm Wrote: /builddir/build/RPMS/bout++-openmpi-devel-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-common-4.3.2-4.fc34.x86_64.rpm Wrote: /builddir/build/RPMS/bout++-mpich-devel-4.3.2-4.fc34.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RI45iD + umask 022 + cd /builddir/build/BUILD + cd BOUT++-v4.3.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-4.3.2-4.fc34.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild bout++-4.3.2-4.fc34.src.rpm Finish: build phase for bout++-4.3.2-4.fc34.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1610893728.649060/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1610893728.649060/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1610893728.649060/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bout++-4.3.2-4.fc34.src.rpm) Config(child) 74 minutes 40 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run