Mock Version: 2.2 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-steps.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1589559251.745142/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd5c291386de544b7b3cd88fab48b2f05', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1589559251.745142/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-steps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1585958400 Wrote: /builddir/build/SRPMS/python-steps-3.5.0-1.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-steps.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1589559251.745142/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '87c797aa75804fbb8ed7a1293bddc4b8', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1589559251.745142/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.363vbyan:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-steps.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1585958400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Z3Qznu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf STEPS-3.5.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/steps-3.5.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd STEPS-3.5.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git add . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'python-steps-3.5.0 base' + /usr/bin/cat /builddir/build/SOURCES/0001-Unbundle-gtest.patch + /usr/bin/git apply --index --reject - Checking patch test/CMakeLists.txt... Applied patch test/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0001-Unbundle-gtest.patch --author 'rpm-build ' + /usr/bin/cat /builddir/build/SOURCES/0003-Remove-flags-set-by-project.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0003-Remove-flags-set-by-project.patch --author 'rpm-build ' + /usr/bin/cat /builddir/build/SOURCES/0004-Remove-pysteps-flags.patch + /usr/bin/git apply --index --reject - Checking patch pysteps/CMakeLists.txt... Applied patch pysteps/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0004-Remove-pysteps-flags.patch --author 'rpm-build ' + /usr/bin/cat /builddir/build/SOURCES/0005-Disable-pyinstall.patch + /usr/bin/git apply --index --reject - Checking patch pysteps/CMakeLists.txt... Applied patch pysteps/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0005-Disable-pyinstall.patch --author 'rpm-build ' + mkdir -pv src/third_party/easyloggingpp/src/ mkdir: created directory 'src/third_party/easyloggingpp/src/' + cp /builddir/build/SOURCES/easylogging++.cc src/third_party/easyloggingpp/src/ -v '/builddir/build/SOURCES/easylogging++.cc' -> 'src/third_party/easyloggingpp/src/easylogging++.cc' + cp /builddir/build/SOURCES/easylogging++.h src/third_party/easyloggingpp/src/ -v '/builddir/build/SOURCES/easylogging++.h' -> 'src/third_party/easyloggingpp/src/easylogging++.h' + mkdir build + mkdir build-openmpi + mkdir build-mpich + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ICw5Zw + umask 022 + cd /builddir/build/BUILD *** BUILDING steps-3.5.0 *** + cd STEPS-3.5.0 + export MPI_COMPILE_TYPE= + MPI_COMPILE_TYPE= + export MPI_COMPILER=serial + MPI_COMPILER=serial + export MPI_SUFFIX= + MPI_SUFFIX= + export MPI_HOME=/usr + MPI_HOME=/usr + export MPI_BIN=/usr/bin + MPI_BIN=/usr/bin + export MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages + MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages + export MPI_YES=False + MPI_YES=False + echo + echo '*** BUILDING steps-3.5.0 ***' + echo + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS ~/build/BUILD/STEPS-3.5.0/build ~/build/BUILD/STEPS-3.5.0 + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + pushd build + cmake -DUSE_BUNDLE_EASYLOGGINGPP:BOOLEAN=ON -DUSE_BUNDLE_RANDOM123:BOOLEAN=OFF -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DPYTHON_INSTALL_PREFIX:PATH=/usr/lib64/python3.8/site-packages -DCMAKE_SKIP_RPATH:BOOL=ON -DUSE_MPI:BOOL=False -DUSE_PETSC:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr -DBUILD_SHARED_LIBS:BOOL=ON -DLIB_SUFFIX=64 ../ -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Random123:/usr/include -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX14 -- Performing Test COMPILER_SUPPORTS_CXX14 - Success -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Looking for strip utility -- Looking for strip utility - found -- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.3") -- Found PythonInterpLibs: /usr/lib64/libpython3.8.so -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- PYTHON packages being installed to /usr/lib64/python3.8/site-packages. To change use -DPYTHON_INSTALL_PREFIX= -- Found Cython: /usr/bin/cython (found suitable version "3.0", minimum required is "0.25.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/STEPS-3.5.0/build + popd ~/build/BUILD/STEPS-3.5.0 + make -j2 -C build make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/src /builddir/build/BUILD/STEPS-3.5.0/build/src/CMakeFiles/libsteps-obj.dir/DependInfo.cmake --color= Scanning dependencies of target libsteps-obj make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 1%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/error.cpp.o [ 1%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/init.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/init.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/init.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/error.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/error.cpp [ 2%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/finish.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/finish.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/finish.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/comp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp 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-std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tmpatch.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.cpp [ 7%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/sdiffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/model/diff.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/diff.cpp.o -c 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-std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/surfsys.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/surfsys.cpp [ 13%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/volsys.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src 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src/CMakeFiles/libsteps-obj.dir/steps/model/vdeptrans.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/vdeptrans.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_main.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_main.cpp [ 25%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_memb.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_memb.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_memb.cpp [ 26%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_patch.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/solver/api_diffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/reacdef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/reacdef.cpp [ 34%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/specdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/specdef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/specdef.cpp [ 35%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/sreacdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/statedef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/statedef.cpp [ 36%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/chandef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/chandef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/chandef.cpp [ 37%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/ghkcurrdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/solver/vdepsreacdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/vdepsreacdef.cpp.o 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src/CMakeFiles/libsteps-obj.dir/steps/tetexact/sreac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/sreac.cpp.o -c 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/ghkcurr.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetexact/ghkcurr.cpp [ 53%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/tetexact/vdeptrans.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/tetexact/sdiffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/sdiffboundary.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetexact/sdiffboundary.cpp [ 57%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/wmdirect/comp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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src/CMakeFiles/libsteps-obj.dir/third_party/easyloggingpp/src/easylogging++.cc.o cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/c++ -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -Wno-double-promotion -Wno-shadow 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CMakeFiles/libsteps-obj.dir/steps/wmdirect/wmdirect.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrk4/wmrk4.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/rng.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/mt19937.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/comp.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/wmrssa.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/r123.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/create.cpp.o CMakeFiles/libsteps-obj.dir/steps/util/checkid.cpp.o CMakeFiles/libsteps-obj.dir/third_party/easyloggingpp/src/easylogging++.cc.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_band.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_bandpre.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_bbdpre.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_dense.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_diag.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_direct.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_io.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spbcgs.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spgmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spils.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_sptfqmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/nvec_ser/fnvector_serial.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/nvec_ser/nvector_serial.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_band.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_dense.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_direct.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_iterative.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_math.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_nvector.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_spbcgs.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_spgmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_sptfqmr.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/bdsystem_lapack.cpp.o /usr/bin/ranlib libsteps.a make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 86%] Built target libsteps_static cd /builddir/build/BUILD/STEPS-3.5.0/build/src && /usr/bin/cmake -E cmake_symlink_library 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test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 88%] Building CXX object test/unit/cpp/CMakeFiles/test_rng.dir/test_rng.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_rng.dir/test_rng.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp: In function 'void binomial_check(const string&, uint, double, uint, double, uint, double)': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:57:16: warning: unused variable 'n_dof' [-Wunused-variable] 57 | const uint n_dof = n_sample - 1; | ^~~~~ /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:80:29: warning: variable 'qpair' set but not used [-Wunused-but-set-variable] 80 | std::pair qpair = std::make_pair(level_confidence, n_sample-1); | ^~~~~ [ 89%] Linking CXX executable test_rng cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rng.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bbox.dir/test_bbox.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bbox.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/pysteps /builddir/build/BUILD/STEPS-3.5.0/build/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= Scanning dependencies of target cysteps make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 91%] Building CXX object pysteps/CMakeFiles/cysteps.dir/steps/cysteps.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/pysteps && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -Dcysteps_EXPORTS -I/usr/include/python3.8 -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/cysteps.dir/steps/cysteps.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp [ 91%] Linking CXX executable test_bbox cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bbox.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_bbox.dir/test_bbox.cpp.o -o test_bbox -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 91%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= Scanning dependencies of target test_tetmesh make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 92%] Building CXX object test/unit/cpp/CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_tetmesh.cpp /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp: In function 'PyObject* __pyx_pf_7cysteps_11_py_Tetmesh_102removeROI(__pyx_obj_7cysteps__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:47215:164: warning: 'void steps::tetmesh::Tetmesh::removeROI(const string&)' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 47215 | ((struct __pyx_vtabstruct_7cysteps__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->removeROI(__pyx_f_7cysteps_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:586:10: note: declared here 586 | void removeROI(std::string const &id); | ^~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp: In function 'PyObject* __pyx_pf_7cysteps_11_py_Tetmesh_106getROIType(__pyx_obj_7cysteps__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:47435:177: warning: 'steps::tetmesh::ElementType steps::tetmesh::Tetmesh::getROIType(const string&) const' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 47435 | __pyx_t_1 = ((struct __pyx_vtabstruct_7cysteps__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIType(__pyx_f_7cysteps_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:594:17: note: declared here 594 | ElementType getROIType(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp: In function 'PyObject* __pyx_pf_7cysteps_11_py_Tetmesh_108getROIData(__pyx_obj_7cysteps__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:47510:177: warning: 'steps::tetmesh::ROISet::vector_data_type steps::tetmesh::Tetmesh::getROIData(const string&) const' is deprecated: type should be specified when retrieving a ROI [-Wdeprecated-declarations] 47510 | __pyx_t_1 = ((struct __pyx_vtabstruct_7cysteps__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIData(__pyx_f_7cysteps_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:598:30: note: declared here 598 | ROISet::vector_data_type getROIData(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp: In function 'PyObject* __pyx_pf_7cysteps_11_py_Tetmesh_110getROIDataSize(__pyx_obj_7cysteps__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:47585:181: warning: 'uint steps::tetmesh::Tetmesh::getROIDataSize(const string&) const' is deprecated: usage lead to bad pattern [-Wdeprecated-declarations] 47585 | __pyx_t_1 = ((struct __pyx_vtabstruct_7cysteps__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIDataSize(__pyx_f_7cysteps_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:603:10: note: declared here 603 | uint getROIDataSize(std::string const &id) const; | ^~~~~~~~~~~~~~ [ 93%] Linking CXX executable test_tetmesh cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tetmesh.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -o test_tetmesh -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 93%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= Scanning dependencies of target test_membership make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 93%] Building CXX object test/unit/cpp/CMakeFiles/test_membership.dir/test_membership.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_membership.dir/test_membership.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_membership.cpp [ 94%] Linking CXX executable test_membership cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_membership.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_membership.dir/test_membership.cpp.o -o test_membership -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 94%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= Scanning dependencies of target test_sample make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 94%] Building CXX object test/unit/cpp/CMakeFiles/test_sample.dir/test_sample.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_sample.dir/test_sample.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_sample.cpp [ 95%] Linking CXX executable test_sample cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sample.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sample.dir/test_sample.cpp.o -o test_sample -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 95%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= Scanning dependencies of target test_small_binomial make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 96%] Building CXX object test/unit/cpp/CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_small_binomial.cpp [ 96%] Linking CXX executable test_small_binomial cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_small_binomial.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -o test_small_binomial -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 96%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= Scanning dependencies of target test_checkid make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 97%] Building CXX object test/unit/cpp/CMakeFiles/test_checkid.dir/test_checkid.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_checkid.dir/test_checkid.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_checkid.cpp [ 98%] Linking CXX executable test_checkid cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_checkid.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_checkid.dir/test_checkid.cpp.o -o test_checkid -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 98%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= Scanning dependencies of target test_bdsystem make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 99%] Building CXX object test/unit/cpp/CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp && /usr/bin/c++ -DGNU_FORCE_INLINE=[[gnu::always_inline]] -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp: In instantiation of 'void LinSystemImplTest_Bw7_Test::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i ../build/pysteps/build/lib/steps copying steps/rng.py -> ../build/pysteps/build/lib/steps copying steps/quiet.py -> ../build/pysteps/build/lib/steps copying steps/model.py -> ../build/pysteps/build/lib/steps copying steps/geom.py -> ../build/pysteps/build/lib/steps copying steps/__init__.py -> ../build/pysteps/build/lib/steps creating ../build/pysteps/build/lib/steps/visual copying steps/visual/__init__.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/StaticComponent.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/SimDisplay.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/Plotting.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/PartitionViewer.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/DynamicComponent.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/Control.py -> ../build/pysteps/build/lib/steps/visual copying steps/visual/Colors.py -> ../build/pysteps/build/lib/steps/visual creating ../build/pysteps/build/lib/steps/utilities copying steps/utilities/steps_shadow.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/steps_cubit.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/sbml.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/morph_support.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/metis_support.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/meshio.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/meshctrl.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/geom_decompose.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/cubit_support.py -> ../build/pysteps/build/lib/steps/utilities copying steps/utilities/__init__.py -> ../build/pysteps/build/lib/steps/utilities creating ../build/pysteps/build/lib/steps/mpi copying steps/mpi/solver.py -> ../build/pysteps/build/lib/steps/mpi copying steps/mpi/__init__.py -> ../build/pysteps/build/lib/steps/mpi creating ../build/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/simulate.py -> ../build/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/matlab_parser.py -> ../build/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/event_parser.py -> ../build/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/__init__.py -> ../build/pysteps/build/lib/steps/utilities/matlab_support + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 75 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' *** BUILDING steps-3.5.0-mpich *** ~/build/BUILD/STEPS-3.5.0/build-mpich ~/build/BUILD/STEPS-3.5.0 ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + export FC=mpif90 + FC=mpif90 + export F77=mpif77 + F77=mpif77 + export MPI_YES=True + MPI_YES=True + export MPI_COMPILE_TYPE=-mpich + MPI_COMPILE_TYPE=-mpich + echo + echo '*** BUILDING steps-3.5.0-mpich ***' + echo + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + pushd build-mpich + cmake -DUSE_BUNDLE_EASYLOGGINGPP:BOOLEAN=ON -DUSE_BUNDLE_RANDOM123:BOOLEAN=OFF -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DPYTHON_INSTALL_PREFIX:PATH=/usr/lib64/python3.8/site-packages/mpich -DCMAKE_SKIP_RPATH:BOOL=ON -DUSE_MPI:BOOL=True -DUSE_PETSC:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/mpich -DBUILD_SHARED_LIBS:BOOL=ON -DLIB_SUFFIX=64 ../ -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/lib64/mpich/bin/mpicc -- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx -- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Random123:/usr/include -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX14 -- Performing Test COMPILER_SUPPORTS_CXX14 - Success -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Looking for strip utility -- Looking for strip utility - found -- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.3") -- Found PythonInterpLibs: /usr/lib64/libpython3.8.so -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found MPI_C: /usr/lib64/mpich/bin/mpicc (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- PYTHON packages being installed to /usr/lib64/python3.8/site-packages/mpich. To change use -DPYTHON_INSTALL_PREFIX= -- Found Cython: /usr/bin/cython (found suitable version "3.0", minimum required is "0.25.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/STEPS-3.5.0/build-mpich + popd ~/build/BUILD/STEPS-3.5.0 + make -j2 -C build-mpich make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build-mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-mpich/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build-mpich/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src/CMakeFiles/libsteps-obj.dir/DependInfo.cmake --color= Scanning dependencies of target libsteps-obj make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 1%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/init.cpp.o [ 1%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/error.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/init.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/init.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/error.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/error.cpp [ 2%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/finish.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/finish.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/finish.cpp [ 2%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/comp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/comp.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/comp.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/geom.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/geom.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/geom.cpp [ 4%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/patch.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/patch.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/patch.cpp [ 5%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/tmcomp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tmcomp.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmcomp.cpp [ 5%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/tmpatch.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tmpatch.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.cpp [ 6%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/sdiffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/sdiffboundary.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/sdiffboundary.cpp [ 6%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/memb.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/diffboundary.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/diffboundary.cpp [ 8%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/model.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/model.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/model.cpp [ 8%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/diff.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/diff.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/diff.cpp [ 9%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/chan.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/model/sreac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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-I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/ghkcurr.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/ghkcurr.cpp [ 14%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/vdeptrans.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 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src/CMakeFiles/libsteps-obj.dir/steps/tetode/tet.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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-I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_memb.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_memb.cpp [ 23%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_patch.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 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object src/CMakeFiles/libsteps-obj.dir/steps/solver/chandef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/chandef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/chandef.cpp [ 33%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/ghkcurrdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/diffboundarydef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/diffboundarydef.cpp [ 34%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/ohmiccurrdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexconnection.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexconnection.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/efield/vertexconnection.cpp [ 40%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexelement.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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src/CMakeFiles/libsteps-obj.dir/steps/tetexact/reac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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src/CMakeFiles/libsteps-obj.dir/steps/tetexact/vdepsreac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/vdepsreac.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetexact/vdepsreac.cpp [ 49%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/tetexact/diffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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src/CMakeFiles/libsteps-obj.dir/steps/wmdirect/reac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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src/CMakeFiles/libsteps-obj.dir/steps/wmrssa/patch.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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src/CMakeFiles/libsteps-obj.dir/third_party/easyloggingpp/src/easylogging++.cc.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC 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src/CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_dense.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/lib64/mpich/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sdiff.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tet.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tetopsplit.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tri.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/ghkcurr.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/vdeptrans.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/vdepsreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/diffboundary.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/wmvol.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sdiffboundary.cpp.o /usr/bin/ranlib libsteps.a make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 87%] Built target libsteps_static cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src && /usr/bin/cmake -E cmake_symlink_library libsteps.so.3.5.0 libsteps.so.3.5 libsteps.so make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 87%] Built target libsteps make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/depend make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp 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/builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_point3d.dir/test_point3d.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_point3d.cpp [ 88%] Linking CXX executable test_point3d cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_point3d.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_point3d.dir/test_point3d.cpp.o -o test_point3d -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 88%] Built target test_point3d make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_rng.dir/DependInfo.cmake --color= Scanning dependencies of target test_rng make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 88%] Building CXX object test/unit/cpp/CMakeFiles/test_rng.dir/test_rng.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_rng.dir/test_rng.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp: In function 'void binomial_check(const string&, uint, double, uint, double, uint, double)': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:57:16: warning: unused variable 'n_dof' [-Wunused-variable] 57 | const uint n_dof = n_sample - 1; | ^~~~~ /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:80:29: warning: variable 'qpair' set but not used [-Wunused-but-set-variable] 80 | std::pair qpair = std::make_pair(level_confidence, n_sample-1); | ^~~~~ [ 89%] Linking CXX executable test_rng cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rng.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_rng.dir/test_rng.cpp.o -o test_rng -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 89%] Built target test_rng make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_bbox.dir/DependInfo.cmake --color= Scanning dependencies of target test_bbox make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 90%] Building CXX object test/unit/cpp/CMakeFiles/test_bbox.dir/test_bbox.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bbox.dir/test_bbox.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bbox.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= Scanning dependencies of target cysteps make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 91%] Building CXX object pysteps/CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -Dcysteps_EXPORTS -I/usr/include/python3.8 -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp [ 92%] Linking CXX executable test_bbox cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bbox.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_bbox.dir/test_bbox.cpp.o -o test_bbox -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 92%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= Scanning dependencies of target test_tetmesh make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 93%] Building CXX object test/unit/cpp/CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_tetmesh.cpp /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_102removeROI(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48769:174: warning: 'void steps::tetmesh::Tetmesh::removeROI(const string&)' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48769 | ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->removeROI(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:586:10: note: declared here 586 | void removeROI(std::string const &id); | ^~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_106getROIType(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48989:187: warning: 'steps::tetmesh::ElementType steps::tetmesh::Tetmesh::getROIType(const string&) const' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48989 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIType(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:594:17: note: declared here 594 | ElementType getROIType(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_108getROIData(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49064:187: warning: 'steps::tetmesh::ROISet::vector_data_type steps::tetmesh::Tetmesh::getROIData(const string&) const' is deprecated: type should be specified when retrieving a ROI [-Wdeprecated-declarations] 49064 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIData(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:598:30: note: declared here 598 | ROISet::vector_data_type getROIData(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_110getROIDataSize(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49139:191: warning: 'uint steps::tetmesh::Tetmesh::getROIDataSize(const string&) const' is deprecated: usage lead to bad pattern [-Wdeprecated-declarations] 49139 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIDataSize(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:603:10: note: declared here 603 | uint getROIDataSize(std::string const &id) const; | ^~~~~~~~~~~~~~ [ 94%] Linking CXX executable test_tetmesh cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tetmesh.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -o test_tetmesh -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 94%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= Scanning dependencies of target test_membership make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 95%] Building CXX object test/unit/cpp/CMakeFiles/test_membership.dir/test_membership.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_membership.dir/test_membership.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_membership.cpp [ 96%] Linking CXX executable test_membership cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_membership.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_membership.dir/test_membership.cpp.o -o test_membership -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 96%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= Scanning dependencies of target test_sample make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 97%] Building CXX object test/unit/cpp/CMakeFiles/test_sample.dir/test_sample.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_sample.dir/test_sample.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_sample.cpp [ 97%] Linking CXX executable test_sample cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sample.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sample.dir/test_sample.cpp.o -o test_sample -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 97%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= Scanning dependencies of target test_small_binomial make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 98%] Building CXX object test/unit/cpp/CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_small_binomial.cpp [ 98%] Linking CXX executable test_small_binomial cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_small_binomial.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -o test_small_binomial -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 98%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= Scanning dependencies of target test_checkid make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 99%] Building CXX object test/unit/cpp/CMakeFiles/test_checkid.dir/test_checkid.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_checkid.dir/test_checkid.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_checkid.cpp [ 99%] Linking CXX executable test_checkid cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_checkid.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_checkid.dir/test_checkid.cpp.o -o test_checkid -lpthread -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 99%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= Scanning dependencies of target test_bdsystem make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 99%] Building CXX object test/unit/cpp/CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp: In instantiation of 'void LinSystemImplTest_Bw7_Test::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i ../build-mpich/pysteps/build/lib/steps copying steps/rng.py -> ../build-mpich/pysteps/build/lib/steps copying steps/quiet.py -> ../build-mpich/pysteps/build/lib/steps copying steps/model.py -> ../build-mpich/pysteps/build/lib/steps copying steps/geom.py -> ../build-mpich/pysteps/build/lib/steps copying steps/__init__.py -> ../build-mpich/pysteps/build/lib/steps creating ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/__init__.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/StaticComponent.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/SimDisplay.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/Plotting.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/PartitionViewer.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/DynamicComponent.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/Control.py -> ../build-mpich/pysteps/build/lib/steps/visual copying steps/visual/Colors.py -> ../build-mpich/pysteps/build/lib/steps/visual creating ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/steps_shadow.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/steps_cubit.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/sbml.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/morph_support.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/metis_support.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/meshio.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/meshctrl.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/geom_decompose.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/cubit_support.py -> ../build-mpich/pysteps/build/lib/steps/utilities copying steps/utilities/__init__.py -> ../build-mpich/pysteps/build/lib/steps/utilities creating ../build-mpich/pysteps/build/lib/steps/mpi copying steps/mpi/solver.py -> ../build-mpich/pysteps/build/lib/steps/mpi copying steps/mpi/__init__.py -> ../build-mpich/pysteps/build/lib/steps/mpi creating ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/simulate.py -> ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/matlab_parser.py -> ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/event_parser.py -> ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/__init__.py -> ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 75 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 75 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX *** BUILDING steps-3.5.0-openmpi *** ~/build/BUILD/STEPS-3.5.0/build-openmpi ~/build/BUILD/STEPS-3.5.0 ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export CC=mpicc + CC=mpicc + export CXX=mpicxx + CXX=mpicxx + export FC=mpif90 + FC=mpif90 + export F77=mpif77 + F77=mpif77 + export MPI_YES=True + MPI_YES=True + export MPI_COMPILE_TYPE=-openmpi + MPI_COMPILE_TYPE=-openmpi + echo + echo '*** BUILDING steps-3.5.0-openmpi ***' + echo + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + pushd build-openmpi + cmake -DUSE_BUNDLE_EASYLOGGINGPP:BOOLEAN=ON -DUSE_BUNDLE_RANDOM123:BOOLEAN=OFF -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DPYTHON_INSTALL_PREFIX:PATH=/usr/lib64/python3.8/site-packages/openmpi -DCMAKE_SKIP_RPATH:BOOL=ON -DUSE_MPI:BOOL=True -DUSE_PETSC:BOOL=False -DCMAKE_INSTALL_PREFIX:PATH=/usr/lib64/openmpi -DBUILD_SHARED_LIBS:BOOL=ON -DLIB_SUFFIX=64 ../ -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc -- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx -- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Random123:/usr/include -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX14 -- Performing Test COMPILER_SUPPORTS_CXX14 - Success -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Looking for strip utility -- Looking for strip utility - found -- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.3") -- Found PythonInterpLibs: /usr/lib64/libpython3.8.so -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found MPI_C: /usr/lib64/openmpi/bin/mpicc (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Looking for sgemm_ -- Looking for sgemm_ - found -- A library with BLAS API found. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- PYTHON packages being installed to /usr/lib64/python3.8/site-packages/openmpi. To change use -DPYTHON_INSTALL_PREFIX= -- Found Cython: /usr/bin/cython (found suitable version "3.0", minimum required is "0.25.1") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/STEPS-3.5.0/build-openmpi + popd ~/build/BUILD/STEPS-3.5.0 + make -j2 -C build-openmpi make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build-openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory 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src/CMakeFiles/libsteps-obj.dir/steps/error.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/init.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/init.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/comp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/comp.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/comp.cpp [ 3%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/geom.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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/builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/geom/patch.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/patch.cpp [ 5%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/geom/tmcomp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 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src/CMakeFiles/libsteps-obj.dir/steps/geom/sdiffboundary.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/model.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/model.cpp [ 8%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/model/diff.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem 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object src/CMakeFiles/libsteps-obj.dir/steps/model/vdepsreac.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/model/vdepsreac.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/model/vdepsreac.cpp [ 15%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/math/tetrahedron.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/math/linsolve.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/math/linsolve.cpp [ 17%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/math/triangle.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetode/tetode.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetode/tetode.cpp [ 21%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_comp.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem 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&& /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_patch.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_patch.cpp [ 23%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_tet.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_tet.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_tet.cpp [ 24%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_vert.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/api_diffboundary.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/api_diffboundary.cpp [ 26%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/api_recording.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem 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src/CMakeFiles/libsteps-obj.dir/steps/solver/compdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/compdef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/compdef.cpp [ 28%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/diffdef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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src/CMakeFiles/libsteps-obj.dir/steps/solver/sdiffboundarydef.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/sdiffboundarydef.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/sdiffboundarydef.cpp [ 36%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/efield/dVsolver.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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src/CMakeFiles/libsteps-obj.dir/steps/solver/efield/tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/solver/efield/tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/solver/efield/tetmesh.cpp [ 40%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexconnection.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/sreac.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetexact/sreac.cpp [ 45%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/tetexact/tet.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem 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-I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/libsteps-obj.dir/steps/tetexact/tetexact.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/src/steps/tetexact/tetexact.cpp [ 46%] Building CXX object src/CMakeFiles/libsteps-obj.dir/steps/tetexact/tri.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 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src/CMakeFiles/libsteps-obj.dir/steps/wmdirect/kproc.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/lib64/openmpi/bin/mpicxx -DELPP_DISABLE_DEFAULT_CRASH_HANDLING=1 -DELPP_NO_DEFAULT_LOG_FILE=1 -DELPP_STL_LOGGING=1 -DENABLE_ASSERTLOG=1 -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src/. -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o 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CMakeFiles/libsteps-obj.dir/steps/solver/vdeptransdef.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/vdepsreacdef.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/sdiffboundarydef.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/dVsolver.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/bdsystem.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/efield.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/matrix.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/tetcoupler.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/tetmesh.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexconnection.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/vertexelement.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/comp.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/diff.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/sdiff.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/tet.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/tetexact.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/tri.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/ghkcurr.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/vdeptrans.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/vdepsreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/diffboundary.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/wmvol.cpp.o CMakeFiles/libsteps-obj.dir/steps/tetexact/sdiffboundary.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/comp.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmdirect/wmdirect.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrk4/wmrk4.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/rng.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/mt19937.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/comp.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/wmrssa/wmrssa.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/r123.cpp.o CMakeFiles/libsteps-obj.dir/steps/rng/create.cpp.o CMakeFiles/libsteps-obj.dir/steps/util/checkid.cpp.o CMakeFiles/libsteps-obj.dir/third_party/easyloggingpp/src/easylogging++.cc.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_band.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_bandpre.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_bbdpre.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_dense.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_diag.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_direct.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_io.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spbcgs.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spgmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_spils.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode_sptfqmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/cvode/cvode.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/nvec_ser/fnvector_serial.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/nvec_ser/nvector_serial.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_band.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_dense.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_direct.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_iterative.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_math.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_nvector.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_spbcgs.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_spgmr.cpp.o CMakeFiles/libsteps-obj.dir/third_party/cvode-2.6.0/src/sundials/sundials_sptfqmr.cpp.o CMakeFiles/libsteps-obj.dir/steps/solver/efield/bdsystem_lapack.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/mpi_init.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/mpi_finish.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/comp.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/diff.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sdiff.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/kproc.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/patch.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/reac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tet.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tetopsplit.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/tri.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/ghkcurr.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/vdeptrans.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/vdepsreac.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/diffboundary.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/wmvol.cpp.o CMakeFiles/libsteps-obj.dir/steps/mpi/tetopsplit/sdiffboundary.cpp.o /usr/bin/ranlib libsteps.a make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 87%] Built target libsteps_static cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src && /usr/bin/cmake -E cmake_symlink_library libsteps.so.3.5.0 libsteps.so.3.5 libsteps.so make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 87%] Built target libsteps make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/depend make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_point3d.dir/DependInfo.cmake --color= [ 87%] Cythonizing extension cysteps_mpi.pyx cd /builddir/build/BUILD/STEPS-3.5.0/pysteps && /usr/bin/cython --fast-fail --cplus -I /builddir/build/BUILD/STEPS-3.5.0/src --output-file /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp cysteps_mpi.pyx Scanning dependencies of target test_point3d make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 87%] Building CXX object test/unit/cpp/CMakeFiles/test_point3d.dir/test_point3d.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_point3d.dir/test_point3d.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_point3d.cpp [ 88%] Linking CXX executable test_point3d cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_point3d.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_point3d.dir/test_point3d.cpp.o -o test_point3d -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 88%] Built target test_point3d make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_rng.dir/DependInfo.cmake --color= Scanning dependencies of target test_rng make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 88%] Building CXX object test/unit/cpp/CMakeFiles/test_rng.dir/test_rng.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_rng.dir/test_rng.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp: In function 'void binomial_check(const string&, uint, double, uint, double, uint, double)': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:57:16: warning: unused variable 'n_dof' [-Wunused-variable] 57 | const uint n_dof = n_sample - 1; | ^~~~~ /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_rng.cpp:80:29: warning: variable 'qpair' set but not used [-Wunused-but-set-variable] 80 | std::pair qpair = std::make_pair(level_confidence, n_sample-1); | ^~~~~ [ 89%] Linking CXX executable test_rng cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_rng.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_rng.dir/test_rng.cpp.o -o test_rng -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 89%] Built target test_rng make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_bbox.dir/DependInfo.cmake --color= Scanning dependencies of target test_bbox make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 90%] Building CXX object test/unit/cpp/CMakeFiles/test_bbox.dir/test_bbox.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bbox.dir/test_bbox.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bbox.cpp cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= Scanning dependencies of target cysteps make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 91%] Building CXX object pysteps/CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/pysteps && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -Dcysteps_EXPORTS -I/usr/include/python3.8 -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp [ 92%] Linking CXX executable test_bbox cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_bbox.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_bbox.dir/test_bbox.cpp.o -o test_bbox -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 92%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= Scanning dependencies of target test_tetmesh make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 93%] Building CXX object test/unit/cpp/CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_tetmesh.cpp /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_102removeROI(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48769:174: warning: 'void steps::tetmesh::Tetmesh::removeROI(const string&)' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48769 | ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->removeROI(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:586:10: note: declared here 586 | void removeROI(std::string const &id); | ^~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_106getROIType(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48989:187: warning: 'steps::tetmesh::ElementType steps::tetmesh::Tetmesh::getROIType(const string&) const' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48989 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIType(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:594:17: note: declared here 594 | ElementType getROIType(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_108getROIData(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49064:187: warning: 'steps::tetmesh::ROISet::vector_data_type steps::tetmesh::Tetmesh::getROIData(const string&) const' is deprecated: type should be specified when retrieving a ROI [-Wdeprecated-declarations] 49064 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIData(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:598:30: note: declared here 598 | ROISet::vector_data_type getROIData(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_110getROIDataSize(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49139:191: warning: 'uint steps::tetmesh::Tetmesh::getROIDataSize(const string&) const' is deprecated: usage lead to bad pattern [-Wdeprecated-declarations] 49139 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIDataSize(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:603:10: note: declared here 603 | uint getROIDataSize(std::string const &id) const; | ^~~~~~~~~~~~~~ [ 94%] Linking CXX executable test_tetmesh cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_tetmesh.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_tetmesh.dir/test_tetmesh.cpp.o -o test_tetmesh -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 94%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= Scanning dependencies of target test_membership make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 95%] Building CXX object test/unit/cpp/CMakeFiles/test_membership.dir/test_membership.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_membership.dir/test_membership.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_membership.cpp [ 96%] Linking CXX executable test_membership cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_membership.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_membership.dir/test_membership.cpp.o -o test_membership -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 96%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= Scanning dependencies of target test_sample make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 97%] Building CXX object test/unit/cpp/CMakeFiles/test_sample.dir/test_sample.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_sample.dir/test_sample.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_sample.cpp [ 97%] Linking CXX executable test_sample cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sample.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_sample.dir/test_sample.cpp.o -o test_sample -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 97%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= Scanning dependencies of target test_small_binomial make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 98%] Building CXX object test/unit/cpp/CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_small_binomial.cpp [ 98%] Linking CXX executable test_small_binomial cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_small_binomial.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_small_binomial.dir/test_small_binomial.cpp.o -o test_small_binomial -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 98%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= Scanning dependencies of target test_checkid make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 99%] Building CXX object test/unit/cpp/CMakeFiles/test_checkid.dir/test_checkid.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_checkid.dir/test_checkid.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_checkid.cpp [ 99%] Linking CXX executable test_checkid cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_checkid.dir/link.txt --verbose=1 /usr/lib64/openmpi/bin/mpicxx -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/test_checkid.dir/test_checkid.cpp.o -o test_checkid -ldl ../../../src/libsteps.so.3.5.0 -lgtest_main -lgtest -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 99%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= Scanning dependencies of target test_bdsystem make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 99%] Building CXX object test/unit/cpp/CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp && /usr/lib64/openmpi/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -o CMakeFiles/test_bdsystem.dir/test_bdsystem.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp: In instantiation of 'void LinSystemImplTest_Bw7_Test::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:106:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:128:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 128 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystem]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i::TestBody() [with gtest_TypeParam_ = steps::solver::efield::BDSystemLapack]': /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:75:1: required from here /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp/test_bdsystem.cpp:91:19: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 91 | for (int i=0;i ../build-openmpi/pysteps/build/lib/steps copying steps/rng.py -> ../build-openmpi/pysteps/build/lib/steps copying steps/quiet.py -> ../build-openmpi/pysteps/build/lib/steps copying steps/model.py -> ../build-openmpi/pysteps/build/lib/steps copying steps/geom.py -> ../build-openmpi/pysteps/build/lib/steps copying steps/__init__.py -> ../build-openmpi/pysteps/build/lib/steps creating ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/__init__.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/StaticComponent.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/SimDisplay.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/Plotting.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/PartitionViewer.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/DynamicComponent.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/Control.py -> ../build-openmpi/pysteps/build/lib/steps/visual copying steps/visual/Colors.py -> ../build-openmpi/pysteps/build/lib/steps/visual creating ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/steps_shadow.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/steps_cubit.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/sbml.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/morph_support.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/metis_support.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/meshio.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/meshctrl.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/geom_decompose.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/cubit_support.py -> ../build-openmpi/pysteps/build/lib/steps/utilities copying steps/utilities/__init__.py -> ../build-openmpi/pysteps/build/lib/steps/utilities creating ../build-openmpi/pysteps/build/lib/steps/mpi copying steps/mpi/solver.py -> ../build-openmpi/pysteps/build/lib/steps/mpi copying steps/mpi/__init__.py -> ../build-openmpi/pysteps/build/lib/steps/mpi creating ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/simulate.py -> ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/matlab_parser.py -> ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/event_parser.py -> ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support copying steps/utilities/matlab_support/__init__.py -> ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 75 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.54fV8v + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 ++ dirname /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 + cd STEPS-3.5.0 *** INSTALLING steps-3.5.0 *** + export MPI_COMPILE_TYPE= + MPI_COMPILE_TYPE= + export MPI_SUFFIX= + MPI_SUFFIX= + export MPI_HOME=/usr + MPI_HOME=/usr + export MPI_BIN=/usr/bin + MPI_BIN=/usr/bin + export MPI_YES=False + MPI_YES=False + export MPI_COMPILE_TYPE= + MPI_COMPILE_TYPE= + export MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages + MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages + echo + echo '*** INSTALLING steps-3.5.0 ***' + echo + make install DESTDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 'INSTALL=install -p' 'CPPROG=cp -p' -C build make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/src /builddir/build/BUILD/STEPS-3.5.0/build/src/CMakeFiles/libsteps-obj.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps-obj.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 84%] Built target libsteps-obj make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/src /builddir/build/BUILD/STEPS-3.5.0/build/src/CMakeFiles/libsteps_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 85%] Built target libsteps_static make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/src /builddir/build/BUILD/STEPS-3.5.0/build/src/CMakeFiles/libsteps.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 86%] Built target libsteps make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/pysteps /builddir/build/BUILD/STEPS-3.5.0/build/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'pysteps/CMakeFiles/cysteps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 87%] Built target cysteps make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_point3d.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_point3d.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 88%] Built target test_point3d make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_rng.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_rng.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 90%] Built target test_rng make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_bbox.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bbox.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 91%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_tetmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 93%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_membership.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 94%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_sample.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 95%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_small_binomial.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 96%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_checkid.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [ 98%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' cd /builddir/build/BUILD/STEPS-3.5.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bdsystem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' [100%] Built target test_bdsystem make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/cysteps.so make: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build' + pushd pysteps ~/build/BUILD/STEPS-3.5.0/pysteps ~/build/BUILD/STEPS-3.5.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 ../build/pysteps/cmake_setup.py build '--executable=/usr/bin/python3 -s' --build-base=../build/pysteps/build/ install --install-lib=/usr/lib64/python3.8/site-packages -O1 --skip-build --root /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 running build running build_py running install running install_lib creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/mpi copying ../build/pysteps/build/lib/steps/mpi/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/mpi copying ../build/pysteps/build/lib/steps/mpi/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/mpi creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support copying ../build/pysteps/build/lib/steps/utilities/matlab_support/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support copying ../build/pysteps/build/lib/steps/utilities/matlab_support/event_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support copying ../build/pysteps/build/lib/steps/utilities/matlab_support/matlab_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support copying ../build/pysteps/build/lib/steps/utilities/matlab_support/simulate.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support copying ../build/pysteps/build/lib/steps/utilities/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/cubit_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/geom_decompose.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/meshctrl.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/meshio.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/metis_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/morph_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/sbml.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/steps_cubit.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities copying ../build/pysteps/build/lib/steps/utilities/steps_shadow.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/Colors.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/Control.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/DynamicComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/PartitionViewer.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/Plotting.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/SimDisplay.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/StaticComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/visual/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual copying ../build/pysteps/build/lib/steps/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps copying ../build/pysteps/build/lib/steps/geom.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps copying ../build/pysteps/build/lib/steps/model.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps copying ../build/pysteps/build/lib/steps/quiet.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps copying ../build/pysteps/build/lib/steps/rng.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps copying ../build/pysteps/build/lib/steps/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/mpi/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/mpi/solver.py to solver.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support/event_parser.py to event_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support/matlab_parser.py to matlab_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/matlab_support/simulate.py to simulate.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/cubit_support.py to cubit_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/geom_decompose.py to geom_decompose.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/meshctrl.py to meshctrl.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/meshio.py to meshio.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/metis_support.py to metis_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/morph_support.py to morph_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/sbml.py to sbml.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/steps_cubit.py to steps_cubit.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/utilities/steps_shadow.py to steps_shadow.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/Colors.py to Colors.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/Control.py to Control.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/DynamicComponent.py to DynamicComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/PartitionViewer.py to PartitionViewer.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/Plotting.py to Plotting.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/SimDisplay.py to SimDisplay.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/StaticComponent.py to StaticComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/visual/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/geom.py to geom.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/model.py to model.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/quiet.py to quiet.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/rng.py to rng.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/solver.py to solver.cpython-38.pyc writing byte-compilation script '/tmp/tmpoa1ojhzk.py' /usr/bin/python3 /tmp/tmpoa1ojhzk.py removing /tmp/tmpoa1ojhzk.py running install_egg_info Writing /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps-3.5.0-py3.8.egg-info + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 11284 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH *** INSTALLING steps-3.5.0-mpich *** ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-x86_64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export 'CFLAGS= -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + CFLAGS=' -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export MPI_YES=True + MPI_YES=True + export MPI_COMPILE_TYPE=-mpich + MPI_COMPILE_TYPE=-mpich + echo + echo '*** INSTALLING steps-3.5.0-mpich ***' + echo + make install DESTDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 'INSTALL=install -p' 'CPPROG=cp -p' -C build-mpich make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build-mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-mpich/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build-mpich/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src/CMakeFiles/libsteps-obj.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps-obj.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 86%] Built target libsteps-obj make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src/CMakeFiles/libsteps_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 86%] Built target libsteps_static make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src /builddir/build/BUILD/STEPS-3.5.0/build-mpich/src/CMakeFiles/libsteps.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 87%] Built target libsteps make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= Scanning dependencies of target cysteps make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 88%] Building CXX object pysteps/CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps && /usr/lib64/mpich/bin/mpicxx -DGNU_FORCE_INLINE=[[gnu::always_inline]] -DUSE_MPI -Dcysteps_EXPORTS -I/usr/include/python3.8 -I/builddir/build/BUILD/STEPS-3.5.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/easyloggingpp/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/src -isystem /builddir/build/BUILD/STEPS-3.5.0/src/third_party/cvode-2.6.0/include -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -fPIC -o CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o -c /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_102removeROI(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48769:174: warning: 'void steps::tetmesh::Tetmesh::removeROI(const string&)' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48769 | ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->removeROI(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:586:10: note: declared here 586 | void removeROI(std::string const &id); | ^~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_106getROIType(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:48989:187: warning: 'steps::tetmesh::ElementType steps::tetmesh::Tetmesh::getROIType(const string&) const' is deprecated: ROI type will be part of its identifier in future version [-Wdeprecated-declarations] 48989 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIType(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:594:17: note: declared here 594 | ElementType getROIType(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_108getROIData(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49064:187: warning: 'steps::tetmesh::ROISet::vector_data_type steps::tetmesh::Tetmesh::getROIData(const string&) const' is deprecated: type should be specified when retrieving a ROI [-Wdeprecated-declarations] 49064 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIData(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:598:30: note: declared here 598 | ROISet::vector_data_type getROIData(std::string const &id) const; | ^~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'PyObject* __pyx_pf_11cysteps_mpi_11_py_Tetmesh_110getROIDataSize(__pyx_obj_11cysteps_mpi__py_Tetmesh*, PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:49139:191: warning: 'uint steps::tetmesh::Tetmesh::getROIDataSize(const string&) const' is deprecated: usage lead to bad pattern [-Wdeprecated-declarations] 49139 | __pyx_t_1 = ((struct __pyx_vtabstruct_11cysteps_mpi__py_Tetmesh *)__pyx_v_self->__pyx_base.__pyx_vtab)->ptrx(__pyx_v_self)->getROIDataSize(__pyx_f_11cysteps_mpi_to_std_string(__pyx_v_id)); | ^ In file included from /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tmpatch.hpp:40, from /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:827: /builddir/build/BUILD/STEPS-3.5.0/src/steps/geom/tetmesh.hpp:603:10: note: declared here 603 | uint getROIDataSize(std::string const &id) const; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp: In function 'int __pyx_pymod_exec_cysteps_mpi(PyObject*)': /builddir/build/BUILD/STEPS-3.5.0/pysteps/steps/cysteps_mpi.cpp:132735:32: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 132735 | static CYTHON_SMALL_CODE int __pyx_pymod_exec_cysteps_mpi(PyObject *__pyx_pyinit_module) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Linking CXX shared module ../lib/steps/cysteps_mpi.so cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich/pysteps && /usr/bin/cmake -E cmake_link_script CMakeFiles/cysteps.dir/link.txt --verbose=1 /usr/lib64/mpich/bin/mpicxx -fPIC -std=c++11 -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -march=native -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -o ../lib/steps/cysteps_mpi.so CMakeFiles/cysteps.dir/steps/cysteps_mpi.cpp.o ../src/libsteps.a -lopenblas make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 88%] Built target cysteps make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_point3d.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_point3d.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 89%] Built target test_point3d make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_rng.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_rng.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 90%] Built target test_rng make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_bbox.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bbox.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 92%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_tetmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 94%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_membership.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 96%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_sample.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 97%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_small_binomial.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 98%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_checkid.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [ 99%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' cd /builddir/build/BUILD/STEPS-3.5.0/build-mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-mpich/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bdsystem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' [100%] Built target test_bdsystem make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-mpich/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/cysteps_mpi.so make: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-mpich' + pushd pysteps ~/build/BUILD/STEPS-3.5.0/pysteps ~/build/BUILD/STEPS-3.5.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 ../build-mpich/pysteps/cmake_setup.py build '--executable=/usr/bin/python3 -s' --build-base=../build-mpich/pysteps/build/ install --install-lib=/usr/lib64/python3.8/site-packages/mpich -O1 --skip-build --root /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 running build running build_py running install running install_lib creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/mpi copying ../build-mpich/pysteps/build/lib/steps/mpi/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/mpi copying ../build-mpich/pysteps/build/lib/steps/mpi/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/mpi creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support copying ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support copying ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support/event_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support copying ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support/matlab_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support copying ../build-mpich/pysteps/build/lib/steps/utilities/matlab_support/simulate.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support copying ../build-mpich/pysteps/build/lib/steps/utilities/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/cubit_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/geom_decompose.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/meshctrl.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/meshio.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/metis_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/morph_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/sbml.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/steps_cubit.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities copying ../build-mpich/pysteps/build/lib/steps/utilities/steps_shadow.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/Colors.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/Control.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/DynamicComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/PartitionViewer.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/Plotting.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/SimDisplay.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/StaticComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/visual/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual copying ../build-mpich/pysteps/build/lib/steps/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps copying ../build-mpich/pysteps/build/lib/steps/geom.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps copying ../build-mpich/pysteps/build/lib/steps/model.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps copying ../build-mpich/pysteps/build/lib/steps/quiet.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps copying ../build-mpich/pysteps/build/lib/steps/rng.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps copying ../build-mpich/pysteps/build/lib/steps/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/mpi/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/mpi/solver.py to solver.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support/event_parser.py to event_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support/matlab_parser.py to matlab_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/matlab_support/simulate.py to simulate.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/cubit_support.py to cubit_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/geom_decompose.py to geom_decompose.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/meshctrl.py to meshctrl.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/meshio.py to meshio.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/metis_support.py to metis_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/morph_support.py to morph_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/sbml.py to sbml.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/steps_cubit.py to steps_cubit.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/utilities/steps_shadow.py to steps_shadow.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/Colors.py to Colors.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/Control.py to Control.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/DynamicComponent.py to DynamicComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/PartitionViewer.py to PartitionViewer.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/Plotting.py to Plotting.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/SimDisplay.py to SimDisplay.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/StaticComponent.py to StaticComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/visual/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/geom.py to geom.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/model.py to model.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/quiet.py to quiet.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/rng.py to rng.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/solver.py to solver.cpython-38.pyc writing byte-compilation script '/tmp/tmppxdyaxo5.py' /usr/bin/python3 /tmp/tmppxdyaxo5.py removing /tmp/tmppxdyaxo5.py running install_egg_info Writing /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps-3.5.0-py3.8.egg-info + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 11284 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/mpich-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 11284 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module load mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-x86_64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-x86_64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-x86_64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-x86_64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-x86_64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-x86_64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-x86_64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-x86_64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-x86_64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-x86_64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-x86_64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-x86_64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-x86_64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi *** INSTALLING steps-3.5.0-openmpi *** ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-x86_64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64 ++ export _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvb3Blbm1waS14ODZfNjQiLFsiZnVsbE5hbWUiXT0ibXBpL29wZW5tcGkteDg2XzY0IixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ibXBpL29wZW5tcGkteDg2XzY0Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFy ++ export _ModuleTable001_ ++ _ModuleTable002_=ZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + export MPI_YES=True + MPI_YES=True + export MPI_COMPILE_TYPE=-openmpi + MPI_COMPILE_TYPE=-openmpi + echo + echo '*** INSTALLING steps-3.5.0-openmpi ***' + echo + make install DESTDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 'INSTALL=install -p' 'CPPROG=cp -p' -C build-openmpi make: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' /usr/bin/cmake -S/builddir/build/BUILD/STEPS-3.5.0 -B/builddir/build/BUILD/STEPS-3.5.0/build-openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/CMakeFiles /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src/CMakeFiles/libsteps-obj.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f src/CMakeFiles/libsteps-obj.dir/build.make src/CMakeFiles/libsteps-obj.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps-obj.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 86%] Built target libsteps-obj make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src/CMakeFiles/libsteps_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f src/CMakeFiles/libsteps_static.dir/build.make src/CMakeFiles/libsteps_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 86%] Built target libsteps_static make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/src/CMakeFiles/libsteps.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f src/CMakeFiles/libsteps.dir/build.make src/CMakeFiles/libsteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'src/CMakeFiles/libsteps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 87%] Built target libsteps make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/pysteps /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/pysteps/CMakeFiles/cysteps.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f pysteps/CMakeFiles/cysteps.dir/build.make pysteps/CMakeFiles/cysteps.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'pysteps/CMakeFiles/cysteps.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 88%] Built target cysteps make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_point3d.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_point3d.dir/build.make test/unit/cpp/CMakeFiles/test_point3d.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_point3d.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 89%] Built target test_point3d make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_rng.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_rng.dir/build.make test/unit/cpp/CMakeFiles/test_rng.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_rng.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 90%] Built target test_rng make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_bbox.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_bbox.dir/build.make test/unit/cpp/CMakeFiles/test_bbox.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bbox.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 92%] Built target test_bbox make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_tetmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_tetmesh.dir/build.make test/unit/cpp/CMakeFiles/test_tetmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_tetmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 94%] Built target test_tetmesh make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_membership.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_membership.dir/build.make test/unit/cpp/CMakeFiles/test_membership.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_membership.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 96%] Built target test_membership make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_sample.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_sample.dir/build.make test/unit/cpp/CMakeFiles/test_sample.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_sample.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 97%] Built target test_sample make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_small_binomial.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_small_binomial.dir/build.make test/unit/cpp/CMakeFiles/test_small_binomial.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_small_binomial.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 98%] Built target test_small_binomial make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_checkid.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_checkid.dir/build.make test/unit/cpp/CMakeFiles/test_checkid.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_checkid.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [ 99%] Built target test_checkid make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' cd /builddir/build/BUILD/STEPS-3.5.0/build-openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/STEPS-3.5.0 /builddir/build/BUILD/STEPS-3.5.0/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/test/unit/cpp/CMakeFiles/test_bdsystem.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make -f test/unit/cpp/CMakeFiles/test_bdsystem.dir/build.make test/unit/cpp/CMakeFiles/test_bdsystem.dir/build make[2]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[2]: Nothing to be done for 'test/unit/cpp/CMakeFiles/test_bdsystem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' [100%] Built target test_bdsystem make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/STEPS-3.5.0/build-openmpi/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/cysteps_mpi.so make: Leaving directory '/builddir/build/BUILD/STEPS-3.5.0/build-openmpi' + pushd pysteps ~/build/BUILD/STEPS-3.5.0/pysteps ~/build/BUILD/STEPS-3.5.0 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 ../build-openmpi/pysteps/cmake_setup.py build '--executable=/usr/bin/python3 -s' --build-base=../build-openmpi/pysteps/build/ install --install-lib=/usr/lib64/python3.8/site-packages/openmpi -O1 --skip-build --root /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 running build running build_py running install running install_lib creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/mpi copying ../build-openmpi/pysteps/build/lib/steps/mpi/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/mpi copying ../build-openmpi/pysteps/build/lib/steps/mpi/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/mpi creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support copying ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support copying ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support/event_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support copying ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support/matlab_parser.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support copying ../build-openmpi/pysteps/build/lib/steps/utilities/matlab_support/simulate.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support copying ../build-openmpi/pysteps/build/lib/steps/utilities/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/cubit_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/geom_decompose.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/meshctrl.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/meshio.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/metis_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/morph_support.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/sbml.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/steps_cubit.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities copying ../build-openmpi/pysteps/build/lib/steps/utilities/steps_shadow.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities creating /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/Colors.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/Control.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/DynamicComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/PartitionViewer.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/Plotting.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/SimDisplay.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/StaticComponent.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/visual/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual copying ../build-openmpi/pysteps/build/lib/steps/__init__.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps copying ../build-openmpi/pysteps/build/lib/steps/geom.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps copying ../build-openmpi/pysteps/build/lib/steps/model.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps copying ../build-openmpi/pysteps/build/lib/steps/quiet.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps copying ../build-openmpi/pysteps/build/lib/steps/rng.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps copying ../build-openmpi/pysteps/build/lib/steps/solver.py -> /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/mpi/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/mpi/solver.py to solver.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support/event_parser.py to event_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support/matlab_parser.py to matlab_parser.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/matlab_support/simulate.py to simulate.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/cubit_support.py to cubit_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/geom_decompose.py to geom_decompose.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/meshctrl.py to meshctrl.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/meshio.py to meshio.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/metis_support.py to metis_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/morph_support.py to morph_support.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/sbml.py to sbml.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/steps_cubit.py to steps_cubit.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/utilities/steps_shadow.py to steps_shadow.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/Colors.py to Colors.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/Control.py to Control.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/DynamicComponent.py to DynamicComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/PartitionViewer.py to PartitionViewer.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/Plotting.py to Plotting.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/SimDisplay.py to SimDisplay.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/StaticComponent.py to StaticComponent.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/visual/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/geom.py to geom.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/model.py to model.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/quiet.py to quiet.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/rng.py to rng.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/solver.py to solver.cpython-38.pyc writing byte-compilation script '/tmp/tmp16ucr6ti.py' /usr/bin/python3 /tmp/tmp16ucr6ti.py removing /tmp/tmp16ucr6ti.py running install_egg_info Writing /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps-3.5.0-py3.8.egg-info + popd ~/build/BUILD/STEPS-3.5.0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ SUPPORT_KSH=no ++ '[' no = yes -o -n '' -o -n '' ']' ++ unset SUPPORT_KSH ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 11284 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + module unload mpi/openmpi-x86_64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-x86_64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/builddir/.local/bin:1\;/builddir/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/builddir/.local/bin:1;/builddir/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hh ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 3.5.0-1.fc33 --unique-debug-suffix -3.5.0-1.fc33.x86_64 --unique-debug-src-base python-steps-3.5.0-1.fc33.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/STEPS-3.5.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/cysteps_mpi.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/cysteps_mpi.so extracting debug info from /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/mpich/steps/cysteps_mpi.so extracting debug info from /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/openmpi/steps/cysteps_mpi.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/cysteps.so extracting debug info from /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8/site-packages/steps/cysteps.so original debug info size: 377768kB, size after compression: 248848kB /usr/lib/rpm/sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. 35752 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib/debug/usr/lib64/python3.8 using /usr/bin/python3.8 Bytecompiling .py files below /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/lib64/python3.8 using /usr/bin/python3.8 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: python3-steps-3.5.0-1.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.UBirdu + umask 022 + cd /builddir/build/BUILD + cd STEPS-3.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps + cp -pr LICENSE.md /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-steps = 3.5.0-1.fc33 python3-steps = 3.5.0-1.fc33 python3-steps(x86-64) = 3.5.0-1.fc33 python3.8-steps = 3.5.0-1.fc33 python3.8dist(steps) = 3.5 python3dist(steps) = 3.5 steps = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.8 rtld(GNU_HASH) Processing files: python3-steps-openmpi-3.5.0-1.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.0jIyBw + umask 022 + cd /builddir/build/BUILD + cd STEPS-3.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-openmpi + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-openmpi + cp -pr LICENSE.md /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-openmpi + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-steps-openmpi = 3.5.0-1.fc33 python3-steps-openmpi = 3.5.0-1.fc33 python3-steps-openmpi(x86-64) = 3.5.0-1.fc33 python3.8-steps-openmpi = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.8 rtld(GNU_HASH) Processing files: python3-steps-mpich-3.5.0-1.fc33.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XAIkfv + umask 022 + cd /builddir/build/BUILD + cd STEPS-3.5.0 + LICENSEDIR=/builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-mpich + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-mpich + cp -pr LICENSE.md /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64/usr/share/licenses/python3-steps-mpich + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-steps-mpich = 3.5.0-1.fc33 python3-steps-mpich = 3.5.0-1.fc33 python3-steps-mpich(x86-64) = 3.5.0-1.fc33 python3.8-steps-mpich = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.8 rtld(GNU_HASH) Processing files: python-steps-debugsource-3.5.0-1.fc33.x86_64 Provides: python-steps-debugsource = 3.5.0-1.fc33 python-steps-debugsource(x86-64) = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python-steps-debuginfo-3.5.0-1.fc33.x86_64 Provides: python-steps-debuginfo = 3.5.0-1.fc33 python-steps-debuginfo(x86-64) = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-steps-debugsource(x86-64) = 3.5.0-1.fc33 Processing files: python3-steps-debuginfo-3.5.0-1.fc33.x86_64 Provides: debuginfo(build-id) = 456de5f9f9c2ed920f17734aff40c0925973b21e python-steps-debuginfo = 3.5.0-1.fc33 python3-steps-debuginfo = 3.5.0-1.fc33 python3-steps-debuginfo(x86-64) = 3.5.0-1.fc33 python3.8-steps-debuginfo = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-steps-debugsource(x86-64) = 3.5.0-1.fc33 Processing files: python3-steps-openmpi-debuginfo-3.5.0-1.fc33.x86_64 Provides: debuginfo(build-id) = adf590599ea3a9609fe607a9f55e54a606763884 python-steps-openmpi-debuginfo = 3.5.0-1.fc33 python3-steps-openmpi-debuginfo = 3.5.0-1.fc33 python3-steps-openmpi-debuginfo(x86-64) = 3.5.0-1.fc33 python3.8-steps-openmpi-debuginfo = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-steps-debugsource(x86-64) = 3.5.0-1.fc33 Processing files: python3-steps-mpich-debuginfo-3.5.0-1.fc33.x86_64 Provides: debuginfo(build-id) = 2bce2eb4c79b94446695c09f80b647031af2622b python-steps-mpich-debuginfo = 3.5.0-1.fc33 python3-steps-mpich-debuginfo = 3.5.0-1.fc33 python3-steps-mpich-debuginfo(x86-64) = 3.5.0-1.fc33 python3.8-steps-mpich-debuginfo = 3.5.0-1.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-steps-debugsource(x86-64) = 3.5.0-1.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 Wrote: /builddir/build/RPMS/python3-steps-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-steps-openmpi-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-steps-mpich-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python-steps-debugsource-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python-steps-debuginfo-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-steps-debuginfo-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-steps-openmpi-debuginfo-3.5.0-1.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-steps-mpich-debuginfo-3.5.0-1.fc33.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.QtQ6Zu + umask 022 + cd /builddir/build/BUILD + cd STEPS-3.5.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-steps-3.5.0-1.fc33.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0