Mock Version: 2.2 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-javabridge.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1590472596.876041/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '7912d984e1154c0bb0ce0aa05d464b66', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1590472596.876041/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-javabridge.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1590451200 Wrote: /builddir/build/SRPMS/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-javabridge.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1590472596.876041/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1001gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'bb5baf2e4dff40fd9ad2d6c479858750', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1590472596.876041/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.gpx1qo2u:/etc/resolv.conf', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-javabridge.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1590451200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.IAhpSu + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + /usr/bin/gzip -dc /builddir/build/SOURCES/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/javabridge-rhino-noversion.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + find . -name '*.jar' -print -delete ./javabridge/jars/rhino-1.7R4.jar + ln -s /usr/share/java/rhino.jar javabridge/jars + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.D0GpFv + umask 022 + cd /builddir/build/BUILD + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -s' running build running build_py creating build creating build/lib.linux-x86_64-3.8 creating build/lib.linux-x86_64-3.8/javabridge copying javabridge/__init__.py -> build/lib.linux-x86_64-3.8/javabridge copying javabridge/wrappers.py -> build/lib.linux-x86_64-3.8/javabridge copying javabridge/noseplugin.py -> build/lib.linux-x86_64-3.8/javabridge copying javabridge/locate.py -> build/lib.linux-x86_64-3.8/javabridge copying javabridge/jutil.py -> build/lib.linux-x86_64-3.8/javabridge creating build/lib.linux-x86_64-3.8/javabridge/tests copying javabridge/tests/test_wrappers.py -> build/lib.linux-x86_64-3.8/javabridge/tests copying javabridge/tests/test_jutil.py -> build/lib.linux-x86_64-3.8/javabridge/tests copying javabridge/tests/test_javabridge.py -> build/lib.linux-x86_64-3.8/javabridge/tests copying javabridge/tests/test_cpython.py -> build/lib.linux-x86_64-3.8/javabridge/tests copying javabridge/tests/__init__.py -> build/lib.linux-x86_64-3.8/javabridge/tests creating build/lib.linux-x86_64-3.8/javabridge/jars copying javabridge/jars/rhino.jar -> build/lib.linux-x86_64-3.8/javabridge/jars running build_ext javac java/org/cellprofiler/runnablequeue/RunnableQueue.java jar cf build/lib.linux-x86_64-3.8/javabridge/jars/runnablequeue.jar -C java org/cellprofiler/runnablequeue/RunnableQueue.class -C java org/cellprofiler/runnablequeue/RunnableQueue$1.class javac java/org/cellprofiler/javabridge/test/RealRect.java jar cf build/lib.linux-x86_64-3.8/javabridge/jars/test.jar -C java org/cellprofiler/javabridge/test/RealRect.class javac java/org/cellprofiler/javabridge/CPython.java java/org/cellprofiler/javabridge/CPythonInvocationHandler.java Note: java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. jar cf build/lib.linux-x86_64-3.8/javabridge/jars/cpython.jar -C java org/cellprofiler/javabridge/CPythonInvocationHandler.class -C java org/cellprofiler/javabridge/CPython.class -C java org/cellprofiler/javabridge/CPython$WrappedException.class -C java org/cellprofiler/javabridge/CPython$StackFrame.class -C java org/cellprofiler/javabridge/CPythonInvocationHandler.class warning: _javabridge_osspecific.pxd:12:4: 'JavaVMOption' redeclared warning: _javabridge_osspecific.pxd:19:4: 'JavaVMInitArgs' redeclared warning: _javabridge.pyx:94:4: 'jvalue' redeclared warning: _javabridge.pyx:112:4: 'JavaVMOption' redeclared warning: _javabridge.pyx:119:4: 'JavaVMInitArgs' redeclared warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge.pyx:373:0: Global name __dead_objects matched from within class scope in contradiction to to Python 'class private name' rules. This may change in a future release. warning: _javabridge_osspecific.pxd:12:4: 'JavaVMOption' redeclared warning: _javabridge_osspecific.pxd:19:4: 'JavaVMInitArgs' redeclared warning: _javabridge_mac.pyx:4:4: 'jint' redeclared warning: _javabridge_mac.pyx:5:4: 'jboolean' redeclared warning: _javabridge_mac.pyx:9:4: 'JavaVM' redeclared warning: _javabridge_mac.pyx:14:4: 'JavaVMOption' redeclared warning: _javabridge_mac.pyx:21:4: 'JavaVMInitArgs' redeclared warning: _javabridge_nomac.pxd:15:4: 'JavaVMInitArgs' redeclared warning: _javabridge_nomac.pxd:20:4: 'JavaVMOption' redeclared warning: _javabridge_nomac.pyx:4:4: 'jint' redeclared warning: _javabridge_nomac.pyx:5:4: 'jboolean' redeclared warning: _javabridge_nomac.pyx:9:4: 'JavaVM' redeclared building 'javabridge._javabridge' extension creating build/temp.linux-x86_64-3.8 gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include/linux -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include/linux -I/usr/lib64/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c _javabridge.c -o build/temp.linux-x86_64-3.8/_javabridge.o In file included from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1832, from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, from _javabridge.c:773: /usr/lib64/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ _javabridge.c: In function ‘__pyx_pf_11_javabridge_9JB_Object_2__repr__’: _javabridge.c:9231:37: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 9231 | __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->o)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 475, __pyx_L1_error) | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_9JB_Object_6addr’: _javabridge.c:9535:37: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 9535 | __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->o)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 493, __pyx_L1_error) | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_8JB_Class_2__repr__’: _javabridge.c:9766:37: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 9766 | __pyx_t_1 = __Pyx_PyInt_From_int(((int)__pyx_v_self->c)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 502, __pyx_L1_error) | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_13__JB_MethodID_2__repr__’: _javabridge.c:10129:41: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 10129 | __pyx_t_4 = __Pyx_PyUnicode_From_int(((int)__pyx_v_self->id), 0, ' ', 'x'); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 521, __pyx_L1_error) | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_12__JB_FieldID_2__repr__’: _javabridge.c:10415:41: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 10415 | __pyx_t_4 = __Pyx_PyUnicode_From_int(((int)__pyx_v_self->id), 0, ' ', 'x'); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 535, __pyx_L1_error) | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_5JB_VM_4create’: _javabridge.c:12256:36: warning: implicit declaration of function ‘CreateJavaVM’; did you mean ‘JNI_CreateJavaVM’? [-Wimplicit-function-declaration] 12256 | __pyx_t_3 = __Pyx_PyInt_From_int(CreateJavaVM((&__pyx_v_self->vm), ((void **)(&__pyx_v_env)), (&__pyx_v_args))); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 651, __pyx_L1_error) | ^~~~~~~~~~~~ | JNI_CreateJavaVM _javabridge.c: In function ‘__pyx_pf_11_javabridge_5JB_VM_14destroy’: _javabridge.c:13424:5: warning: implicit declaration of function ‘StopVM’; did you mean ‘MacStopVM’? [-Wimplicit-function-declaration] 13424 | StopVM(__pyx_v_self->vm); | ^~~~~~ | MacStopVM _javabridge.c: In function ‘__pyx_pf_11_javabridge_6JB_Env_118get_string’: _javabridge.c:26127:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 26127 | __pyx_t_1 = ((((int)__pyx_v_s->o) == 0) != 0); | ^ _javabridge.c: In function ‘__pyx_pf_11_javabridge_6JB_Env_120get_string_utf’: _javabridge.c:26257:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 26257 | __pyx_t_1 = ((((int)__pyx_v_s->o) == 0) != 0); | ^ _javabridge.c: In function ‘__pyx_pymod_exec__javabridge’: _javabridge.c:37880:5: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] 37880 | import_array(); | ^~~~~~~~~~~~ gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include/linux -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include/linux -I/usr/lib64/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c _javabridge_nomac.c -o build/temp.linux-x86_64-3.8/_javabridge_nomac.o gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.8/_javabridge.o build/temp.linux-x86_64-3.8/_javabridge_nomac.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/jre/lib/amd64/server -L/usr/lib64 -Wl,--enable-new-dtags,-R/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/jre/lib/amd64/server -ljvm -o build/lib.linux-x86_64-3.8/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so building java2cpython library creating build/temp.linux-x86_64-3.8/java gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -I/usr/include/python3.8 -Ijava -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include/linux -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include/linux -I/usr/lib64/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c java/org_cellprofiler_javabridge_CPython.c -o build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o -L/usr/lib64 -L/usr/lib64 -o build/lib.linux-x86_64-3.8/javabridge/jars/libjava2cpython.so + /usr/bin/python3 setup.py build_sphinx running build_sphinx Running Sphinx v2.2.2 making output directory... done WARNING: html_static_path entry '_static' does not exist loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='docs.python.org', port=80): Max retries exceeded with url: /objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -2] Name or service not known')) building [mo]: all of 0 po files building [html]: all source files updating environment: [new config] 10 added, 0 changed, 0 removed reading sources... [ 10%] developers reading sources... [ 20%] hello reading sources... [ 30%] highlevel reading sources... [ 40%] index reading sources... [ 50%] installation reading sources... [ 60%] java2python reading sources... [ 70%] javascript reading sources... [ 80%] lowlevel reading sources... [ 90%] start_kill reading sources... [100%] unittesting /usr/lib/python3.8/site-packages/sphinx/util/nodes.py:151: FutureWarning: The iterable returned by Node.traverse() will become an iterator instead of a list in Docutils > 0.16. for classifier in reversed(node.parent.traverse(nodes.classifier)): /usr/lib/python3.8/site-packages/sphinx/util/nodes.py:151: FutureWarning: The iterable returned by Node.traverse() will become an iterator instead of a list in Docutils > 0.16. for classifier in reversed(node.parent.traverse(nodes.classifier)): WARNING: autodoc: failed to import class 'JWrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import class 'JClassWrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import class 'JProxy' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'call' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_call' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_field' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'set_field' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_static_field' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'static_call' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_static_call' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'is_instance_of' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_instance' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'set_static_field' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'to_string' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_nice_arg' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_new' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_method' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_collection_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_dictionary_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_enumeration_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'jdictionary_to_string_dictionary' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'jenumeration_to_string_list' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'iterate_collection' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'iterate_java' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_list' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_map_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 10%] developers WARNING: autodoc: failed to import function 'make_map' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_class_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_field_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'class_for_name' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_constructor_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_method_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'make_future_task' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'execute_runnable_in_main_thread' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'execute_future_in_main_thread' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'execute_callable_in_main_thread' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_future_wrapper' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import exception 'JavaError' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import exception 'JavaException' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import exception 'JVMNotFoundError' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'create_jref' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'create_and_lock_jref' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'redeem_jref' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'lock_jref' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'unlock_jref' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'run_script' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'get_env' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import class 'JB_Env' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import class 'JB_Object' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'start_vm' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'kill_vm' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'activate_awt' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'deactivate_awt' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'attach' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' WARNING: autodoc: failed to import function 'detach' from module 'javabridge'; the following exception was raised: No module named 'javabridge._javabridge' writing output... [ 20%] hello writing output... [ 30%] highlevel writing output... [ 40%] index writing output... [ 50%] installation writing output... [ 60%] java2python writing output... [ 70%] javascript writing output... [ 80%] lowlevel writing output... [ 90%] start_kill writing output... [100%] unittesting generating indices... genindexdone writing additional pages... searchdone copying static files... ... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 57 warnings. The HTML pages are in docs/_build/html. + find docs/_build -name '.*' -print -delete docs/_build/html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.gk2kuw + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 ++ dirname /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 running install running install_lib creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64 creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8 creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge copying build/lib.linux-x86_64-3.8/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars copying build/lib.linux-x86_64-3.8/javabridge/jars/libjava2cpython.so -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars copying build/lib.linux-x86_64-3.8/javabridge/jars/cpython.jar -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars copying build/lib.linux-x86_64-3.8/javabridge/jars/test.jar -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars copying build/lib.linux-x86_64-3.8/javabridge/jars/runnablequeue.jar -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars copying build/lib.linux-x86_64-3.8/javabridge/jars/rhino.jar -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars creating /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/tests/__init__.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/tests/test_cpython.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/tests/test_javabridge.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/tests/test_jutil.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/tests/test_wrappers.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests copying build/lib.linux-x86_64-3.8/javabridge/jutil.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge copying build/lib.linux-x86_64-3.8/javabridge/locate.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge copying build/lib.linux-x86_64-3.8/javabridge/noseplugin.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge copying build/lib.linux-x86_64-3.8/javabridge/wrappers.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge copying build/lib.linux-x86_64-3.8/javabridge/__init__.py -> /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests/__init__.py to __init__.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests/test_cpython.py to test_cpython.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests/test_javabridge.py to test_javabridge.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests/test_jutil.py to test_jutil.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/tests/test_wrappers.py to test_wrappers.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jutil.py to jutil.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/locate.py to locate.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/noseplugin.py to noseplugin.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/wrappers.py to wrappers.cpython-38.pyc byte-compiling /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/__init__.py to __init__.cpython-38.pyc writing byte-compilation script '/tmp/tmpoba3yz5s.py' /usr/bin/python3 /tmp/tmpoba3yz5s.py removing /tmp/tmpoba3yz5s.py running install_egg_info running egg_info creating javabridge.egg-info writing javabridge.egg-info/PKG-INFO writing dependency_links to javabridge.egg-info/dependency_links.txt writing entry points to javabridge.egg-info/entry_points.txt writing requirements to javabridge.egg-info/requires.txt writing top-level names to javabridge.egg-info/top_level.txt writing manifest file 'javabridge.egg-info/SOURCES.txt' reading manifest file 'javabridge.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '*.pyx' writing manifest file 'javabridge.egg-info/SOURCES.txt' Copying javabridge.egg-info to /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge-0.0.0-py3.8.egg-info running install_scripts + rm -rfv /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/bin/__pycache__ + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 1.0.18-5.20190729gitc7ccaed.fc33 --unique-debug-suffix -1.0.18-5.20190729gitc7ccaed.fc33.x86_64 --unique-debug-src-base python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars/libjava2cpython.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so extracting debug info from /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8/site-packages/javabridge/jars/libjava2cpython.so original debug info size: 2524kB, size after compression: 2460kB /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 4511 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib/debug/usr/lib64/python3.8 using /usr/bin/python3.8 Bytecompiling .py files below /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib64/python3.8 using /usr/bin/python3.8 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.YHiKNt + umask 022 + cd /builddir/build/BUILD + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + export PYTHONPATH=tests-install:/builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib/python3.8/site-packages + PYTHONPATH=tests-install:/builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/lib/python3.8/site-packages + /usr/bin/python3 setup.py develop --install-dir=tests-install running develop running egg_info writing javabridge.egg-info/PKG-INFO writing dependency_links to javabridge.egg-info/dependency_links.txt writing entry points to javabridge.egg-info/entry_points.txt writing requirements to javabridge.egg-info/requires.txt writing top-level names to javabridge.egg-info/top_level.txt reading manifest file 'javabridge.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '*.pyx' writing manifest file 'javabridge.egg-info/SOURCES.txt' running build_ext javac java/org/cellprofiler/runnablequeue/RunnableQueue.java jar cf /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/javabridge/jars/runnablequeue.jar -C java org/cellprofiler/runnablequeue/RunnableQueue.class -C java org/cellprofiler/runnablequeue/RunnableQueue$1.class javac java/org/cellprofiler/javabridge/test/RealRect.java jar cf /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/javabridge/jars/test.jar -C java org/cellprofiler/javabridge/test/RealRect.class javac java/org/cellprofiler/javabridge/CPython.java java/org/cellprofiler/javabridge/CPythonInvocationHandler.java Note: java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. jar cf /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/javabridge/jars/cpython.jar -C java org/cellprofiler/javabridge/CPythonInvocationHandler.class -C java org/cellprofiler/javabridge/CPython.class -C java org/cellprofiler/javabridge/CPython$WrappedException.class -C java org/cellprofiler/javabridge/CPython$StackFrame.class -C java org/cellprofiler/javabridge/CPythonInvocationHandler.class copying build/lib.linux-x86_64-3.8/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so -> javabridge building java2cpython library gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python3.8 -Ijava -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include/linux -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include/linux -I/usr/lib64/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c java/org_cellprofiler_javabridge_CPython.c -o build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o -L/usr/lib64 -L/usr/lib64 -o /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/javabridge/jars/libjava2cpython.so Creating /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/tests-install/site.py Creating /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/tests-install/javabridge.egg-link (link to .) Adding javabridge 0.0.0 to easy-install.pth file Installed /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 Processing dependencies for javabridge==0.0.0 Searching for numpy==1.18.4 Best match: numpy 1.18.4 Adding numpy 1.18.4 to easy-install.pth file Installing f2py script to tests-install Installing f2py3 script to tests-install Installing f2py3.8 script to tests-install Using /usr/lib64/python3.8/site-packages Finished processing dependencies for javabridge==0.0.0 + /usr/bin/python3 setup.py nosetests running nosetests running egg_info writing javabridge.egg-info/PKG-INFO writing dependency_links to javabridge.egg-info/dependency_links.txt writing entry points to javabridge.egg-info/entry_points.txt writing requirements to javabridge.egg-info/requires.txt writing top-level names to javabridge.egg-info/top_level.txt reading manifest file 'javabridge.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching '*.pyx' writing manifest file 'javabridge.egg-info/SOURCES.txt' javac java/org/cellprofiler/runnablequeue/RunnableQueue.java javac java/org/cellprofiler/javabridge/test/RealRect.java javac java/org/cellprofiler/javabridge/CPython.java java/org/cellprofiler/javabridge/CPythonInvocationHandler.java Note: java/org/cellprofiler/javabridge/CPythonInvocationHandler.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. copying build/lib.linux-x86_64-3.8/javabridge/_javabridge.cpython-38-x86_64-linux-gnu.so -> javabridge building java2cpython library gcc -pthread -Wno-unused-result -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python3.8 -Ijava -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/include/linux -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include -I/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.252.b01-0.2.ea.fc33.x86_64/default-java/include/linux -I/usr/lib64/python3.8/site-packages/numpy/core/include -I/usr/include/python3.8 -c java/org_cellprofiler_javabridge_CPython.c -o build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o gcc -pthread -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -g build/temp.linux-x86_64-3.8/java/org_cellprofiler_javabridge_CPython.o -L/usr/lib64 -L/usr/lib64 -o /builddir/build/BUILD/python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069/javabridge/jars/libjava2cpython.so nose.plugins.cover: ERROR: Coverage not available: unable to import coverage module sh: python: command not found Warning: Error loading aB�� ......................................Exception in thread "Thread-0" java.lang.NoSuchMethodError: copyValueOf ....................................Exception in thread "Thread-0" java.lang.NoSuchFieldError: NoSuchField .Exception in thread "Thread-0" java.lang.NoClassDefFoundError: no/such/class Caused by: java.lang.ClassNotFoundException: no.such.class at java.net.URLClassLoader.findClass(URLClassLoader.java:382) at java.lang.ClassLoader.loadClass(ClassLoader.java:419) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:352) at java.lang.ClassLoader.loadClass(ClassLoader.java:352) ..Exception in thread "Thread-0" java.lang.NoSuchFieldError: NoSuchField .Exception in thread "Thread-0" java.lang.NoClassDefFoundError: no/such/class Caused by: java.lang.ClassNotFoundException: no.such.class at java.net.URLClassLoader.findClass(URLClassLoader.java:382) at java.lang.ClassLoader.loadClass(ClassLoader.java:419) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:352) at java.lang.ClassLoader.loadClass(ClassLoader.java:352) ................................Exception in thread "Thread-0" java.util.concurrent.CancellationException at java.util.concurrent.FutureTask.report(FutureTask.java:121) at java.util.concurrent.FutureTask.get(FutureTask.java:192) .........................Exception in thread "Thread-0" java.lang.NoSuchFieldError: NoSuchField ..Exception in thread "Thread-0" java.lang.NoSuchFieldError: NoSuchField ............................... ---------------------------------------------------------------------- Ran 168 tests in 0.999s OK + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.66CRKw + umask 022 + cd /builddir/build/BUILD + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + DOCDIR=/builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/doc/python3-javabridge + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/doc/python3-javabridge + cp -pr README.rst /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/doc/python3-javabridge + cp -pr docs/_build/html /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/doc/python3-javabridge + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ipnorx + umask 022 + cd /builddir/build/BUILD + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + LICENSEDIR=/builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/licenses/python3-javabridge + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/licenses/python3-javabridge + cp -pr LICENSE /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64/usr/share/licenses/python3-javabridge + RPM_EC=0 ++ jobs -p + exit 0 Provides: libjava2cpython.so()(64bit) python-javabridge = 1.0.18-5.20190729gitc7ccaed.fc33 python3-javabridge = 1.0.18-5.20190729gitc7ccaed.fc33 python3-javabridge(x86-64) = 1.0.18-5.20190729gitc7ccaed.fc33 python3.8-javabridge = 1.0.18-5.20190729gitc7ccaed.fc33 python3.8dist(javabridge) = 0 python3dist(javabridge) = 0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libjvm.so()(64bit) libjvm.so(SUNWprivate_1.1)(64bit) python(abi) = 3.8 python3.8dist(numpy) rtld(GNU_HASH) Obsoletes: python-javabridge < 1.0.18-5.20190729gitc7ccaed.fc33 Processing files: python-javabridge-debugsource-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 Provides: python-javabridge-debugsource = 1.0.18-5.20190729gitc7ccaed.fc33 python-javabridge-debugsource(x86-64) = 1.0.18-5.20190729gitc7ccaed.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-javabridge-debuginfo-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 Provides: debuginfo(build-id) = 1d43de8e4c7abef3facb8315ecff1837656aef3c debuginfo(build-id) = 1e27899d4bc6a970802df981daa3286afcac83d5 python-javabridge-debuginfo = 1.0.18-5.20190729gitc7ccaed.fc33 python3-javabridge-debuginfo = 1.0.18-5.20190729gitc7ccaed.fc33 python3-javabridge-debuginfo(x86-64) = 1.0.18-5.20190729gitc7ccaed.fc33 python3.8-javabridge-debuginfo = 1.0.18-5.20190729gitc7ccaed.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-javabridge-debugsource(x86-64) = 1.0.18-5.20190729gitc7ccaed.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 Wrote: /builddir/build/RPMS/python3-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python-javabridge-debugsource-1.0.18-5.20190729gitc7ccaed.fc33.x86_64.rpm Wrote: /builddir/build/RPMS/python3-javabridge-debuginfo-1.0.18-5.20190729gitc7ccaed.fc33.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.B8fNuw + umask 022 + cd /builddir/build/BUILD + cd python-javabridge-c7ccaed43ac7752c4ca361abb04fcb4e9ebdb069 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-javabridge-1.0.18-5.20190729gitc7ccaed.fc33.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0