# No py3 since it depends on nibabel which we only provide for py3 %global srcname dipy %global desc %{expand: \ DIPY is a python toolbox for analysis of MR diffusion imaging. DIPY is for research only; please do not use results from DIPY for clinical decisions. Current information can always be found from the DIPY website - http://dipy.org} # Full documentation downloads 100+MB of data, so we'd rather users look at the # upstream documentation %bcond_with docs # Fail because of xvfb related errors %bcond_with tests %{?python_enable_dependency_generator} Name: python-%{srcname} Version: 1.1.1 Release: 2%{?dist} Summary: Diffusion MRI utilities in python License: BSD URL: http://nipy.org/dipy/ Source0: https://github.com/nipy/dipy/archive/%{version}/%{name}-%{version}.tar.gz %description %{desc} %package -n python3-%{srcname} Summary: %{summary} BuildRequires: python3-devel BuildRequires: gcc BuildRequires: %{py3_dist setuptools} BuildRequires: %{py3_dist pytest} BuildRequires: %{py3_dist Cython} BuildRequires: %{py3_dist numpy} >= 1.7.1 BuildRequires: %{py3_dist scipy} >= 0.9 BuildRequires: %{py3_dist nibabel} >= 3.0 BuildRequires: %{py3_dist h5py} >= 2.4 BuildRequires: %{py3_dist matplotlib} %if %{with tests} BuildRequires: %{py3_dist xvfbwrapper} BuildRequires: xorg-x11-server-Xvfb %endif Requires: %{py3_dist h5py} >= 2.4 Requires: %{py3_dist nibabel} >= 2.3 Requires: %{py3_dist scipy} >= 0.9 Requires: %{py3_dist numpy} >= 1.7.1 # Required for some modules but not in Fedora yet # BuildRequires: %%{py3_dist cvxpy} Suggests: %{py3_dist ipython} %{?python_provide:%python_provide python3-%{srcname}} %description -n python3-%{srcname} %{desc} %package doc BuildArch: noarch Summary: %{summary} %description doc Documentation for %{name}. %prep %autosetup -n %{srcname}-%{version} export TEST_WITH_XVFB=true # clean it all up (from the Makefile) find . -name "*.so" -print -delete find . -name "*.pyd" -print -delete find . -name "*.c" -print -delete find . -name "*.html" -print -delete rm -rf build rm -rf docs/_build rm -rf docs/dist rm -rf dipy/dipy.egg-info # Correct interpreter for these---used in building docs and so on sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/docgen_cmd.py sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/build_modref_templates.py find tools/ -name "*.py" -exec sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' '{}' \; # Other shebangs and permission fixes for f in "dipy/boots/resampling.py" "dipy/reconst/benchmarks/bench_csd.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py" "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py" do chmod -x "$f" sed -i '/^#!\/usr\/bin\/env python/ d' "$f" sed -i '/^#!\/usr\/bin\/python/ d' "$f" done %build export TEST_WITH_XVFB=true %py3_build %if %{with docs} pushd doc export PYTHONPATH=../build/ make SPHINXBUILD=sphinx-build-3 PYTHON=%{__python3} html rm -rf _build/html/.doctrees rm -rf _build/html/.buildinfo popd %endif %install %py3_install %check export TEST_WITH_XVFB=True %if %{with tests} %{__python3} -c 'import dipy; dipy.test()' %endif %files -n python3-%{srcname} %license LICENSE %doc README.rst Changelog AUTHOR %{_bindir}/dipy_align_affine %{_bindir}/dipy_align_syn %{_bindir}/dipy_apply_transform %{_bindir}/dipy_ba %{_bindir}/dipy_denoise_lpca %{_bindir}/dipy_denoise_mppca %{_bindir}/dipy_denoise_nlmeans %{_bindir}/dipy_fetch %{_bindir}/dipy_fit_csa %{_bindir}/dipy_fit_csd %{_bindir}/dipy_fit_dki %{_bindir}/dipy_fit_dti %{_bindir}/dipy_fit_ivim %{_bindir}/dipy_fit_mapmri %{_bindir}/dipy_gibbs_ringing %{_bindir}/dipy_horizon %{_bindir}/dipy_info %{_bindir}/dipy_labelsbundles %{_bindir}/dipy_lmm %{_bindir}/dipy_mask %{_bindir}/dipy_median_otsu %{_bindir}/dipy_recobundles %{_bindir}/dipy_reslice %{_bindir}/dipy_slr %{_bindir}/dipy_snr_in_cc %{_bindir}/dipy_track_local %{_bindir}/dipy_track_pft %{_bindir}/dipy_split %{python3_sitearch}/%{srcname} %{python3_sitearch}/%{srcname}-%{version}-py3.?.egg-info %files doc %license LICENSE # Installed by package %{_docdir}/%{srcname}/examples %if %{with docs} %doc doc/_build/html %endif %changelog * Tue May 26 2020 Miro Hrončok - 1.1.1-2 - Rebuilt for Python 3.9 * Sat Feb 01 2020 Ankur Sinha - 1.1.1-1 - Update to new version - Bump nibabel requirement version * Thu Jan 30 2020 Fedora Release Engineering - 1.0.0-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Oct 03 2019 Miro Hrončok - 1.0.0-2 - Rebuilt for Python 3.8.0rc1 (#1748018) * Sat Aug 31 2019 Ankur Sinha - 1.0.0-1 - update to 1.0.0 * Mon Aug 19 2019 Miro Hrončok - 0.16.0-3 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering - 0.16.0-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Mon Apr 08 2019 Ankur Sinha - 0.16.0-1 - Update to latest upstream release - Use gittag instead of snapshot - Add new binaries * Sat Feb 02 2019 Fedora Release Engineering - 0.15.0-0.5.git756b519 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Tue Nov 27 2018 Ankur Sinha - 0.15.0-0.4.git756b519 - Provide Requires explictly as they are not picked up by the autogenerator * Mon Nov 19 2018 Ankur Sinha - 0.15.0-0.3.git756b519 - remove python3-vtk dep - not available in F29 currently, and only needed for doc generation which is disabled * Mon Nov 19 2018 Ankur Sinha - 0.15.0-0.2.git756b519 - Disable doc generation * Thu Nov 15 2018 Ankur Sinha - 0.15.0-0.1.git756b519 - Initial rpm build