Mock Version: 1.4.9
Mock Version: 1.4.9
Mock Version: 1.4.9
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdf19bd5b00>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdf19bd5b00>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'be7a202cc3494b6f9452d6667c12e339', '-D', '/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'be7a202cc3494b6f9452d6667c12e339', '-D', '/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
BUILDSTDERR: sh: /usr/bin/python2: No such file or directory
BUILDSTDERR: sh: /usr/bin/python2: No such file or directory
BUILDSTDERR: sh: /usr/bin/python2: No such file or directory
BUILDSTDERR: sh: /usr/bin/python2: No such file or directory
BUILDSTDERR: warning: Could not canonicalize hostname: be7a202cc3494b6f9452d6667c12e339
BUILDSTDERR: warning: Could not canonicalize hostname: be7a202cc3494b6f9452d6667c12e339
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/rdkit-2017.09.3-2.el7.centos.src.rpm
Wrote: /builddir/build/SRPMS/rdkit-2017.09.3-2.el7.centos.src.rpm
Child return code was: 0
Child return code was: 0
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdf19bd5b00>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7fdf19bd5b00>timeout=0uid=1001gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=True)
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '83d37005a6854279a10659f71c9dc294', '-D', '/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '83d37005a6854279a10659f71c9dc294', '-D', '/var/lib/mock/736198-epel-7-x86_64-1522751293.189527/root', '-a', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=en_US.UTF-8', '-u', 'mockbuild', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False
Building target platforms: x86_64
Building target platforms: x86_64
Building for target x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.eMVAER
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.eMVAER
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2017_09_3
+ rm -rf rdkit-Release_2017_09_3
+ /usr/bin/mkdir -p rdkit-Release_2017_09_3
+ /usr/bin/mkdir -p rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2017_09_3.tar.gz
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2017_09_3.tar.gz
+ /usr/bin/tar -xf -
+ /usr/bin/tar -xf -
+ STATUS=0
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ mv rdkit-Release_2017_09_3 python2
+ mv rdkit-Release_2017_09_3 python2
+ pushd python2
+ pushd python2
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ echo 'Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
+ echo 'Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):'
Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
Patch #1 (rdkit-2015.03-use_cairo_backend_on_tests.patch):
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-use_cairo_backend_on_tests.patch
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-use_cairo_backend_on_tests.patch
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/patch -p1 --fuzz=0
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
patching file rdkit/Chem/Draw/UnitTestSimilarityMaps.py
Hunk #1 succeeded at 169 (offset 71 lines).
Hunk #1 succeeded at 169 (offset 71 lines).
Patch #2 (rdkit-2014.09-do_not_install_sping.patch):
Patch #2 (rdkit-2014.09-do_not_install_sping.patch):
+ echo 'Patch #2 (rdkit-2014.09-do_not_install_sping.patch):'
+ echo 'Patch #2 (rdkit-2014.09-do_not_install_sping.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-do_not_install_sping.patch
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-do_not_install_sping.patch
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
patching file CMakeLists.txt
Hunk #1 succeeded at 191 (offset 42 lines).
Hunk #1 succeeded at 191 (offset 42 lines).
Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):
Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):
+ echo 'Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):'
+ echo 'Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-fix_cmake_files_path.patch
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-fix_cmake_files_path.patch
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
patching file CMakeLists.txt
Hunk #1 succeeded at 115 (offset 34 lines).
Hunk #1 succeeded at 115 (offset 34 lines).
Hunk #2 succeeded at 129 (offset 34 lines).
Hunk #2 succeeded at 129 (offset 34 lines).
Patch #7 (rdkit-2015.03-dont_install_contrib.patch):
Patch #7 (rdkit-2015.03-dont_install_contrib.patch):
+ echo 'Patch #7 (rdkit-2015.03-dont_install_contrib.patch):'
+ echo 'Patch #7 (rdkit-2015.03-dont_install_contrib.patch):'
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-dont_install_contrib.patch
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2015.03-dont_install_contrib.patch
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
patching file CMakeLists.txt
Hunk #1 succeeded at 333 (offset 101 lines).
Hunk #1 succeeded at 333 (offset 101 lines).
+ rm -rf rdkit/sping
+ rm -rf rdkit/sping
+ cp -pr license.txt ReleaseNotes.md ../
+ cp -pr license.txt ReleaseNotes.md ../
~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ popd
+ find python2 -name '*.py'
+ find python2 -name '*.py'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python2|'
+ xargs sed -i '1s|^#!.*|#!/usr/bin/python2|'
+ exit 0
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.toYinQ
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.toYinQ
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ pushd python2
+ pushd python2
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CFLAGS
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed'
+ export CXXFLAGS
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 .
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=ON -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 .
-- The C compiler identification is GNU 4.8.5
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compiler ABI info - done
-- Check if the system is big endian
-- Check if the system is big endian
-- Searching 16 bit integer
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Check size of unsigned short - done
-- Using unsigned short
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Check if the system is big endian - little endian
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found INCHI: /usr/lib64/libinchi.so  
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.5") 
-- Found PythonInterp: /usr/bin/python2 (found version "2.7.5") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.5") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.5") 
-- Boost version: 1.53.0
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- Found the following Boost libraries:
--   python
--   python
BUILDSTDERR: Python Install directory /usr/lib64/python2.7/site-packages
BUILDSTDERR: Python Install directory /usr/lib64/python2.7/site-packages
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") 
-- Looking for include file pthread.h
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found Threads: TRUE  
-- Boost version: 1.53.0
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- Found the following Boost libraries:
--   thread
--   thread
--   system
--   system
-- Boost version: 1.53.0
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- Found the following Boost libraries:
--   serialization
--   serialization
-- Found PostgreSQL: /usr/lib64 (found version "9.2.23") 
-- Found PostgreSQL: /usr/lib64 (found version "9.2.23") 
-- PostgreSQL include dirs: /usr/include;/usr/include/pgsql/server
-- PostgreSQL include dirs: /usr/include;/usr/include/pgsql/server
-- PostgreSQL library dirs: /usr/lib64
-- PostgreSQL library dirs: /usr/lib64
-- PostgreSQL libraries:    pq
-- PostgreSQL libraries:    pq
BUILDSTDERR: == Using strict rotor definition
BUILDSTDERR: == Using strict rotor definition
-- Found BISON: /usr/bin/bison  
-- Found BISON: /usr/bin/bison  
-- Found FLEX: /usr/bin/flex  
-- Found FLEX: /usr/bin/flex  
== Done updating pains files
== Done updating pains files
BUILDSTDERR: == Updating Filters.cpp from pains file
BUILDSTDERR: == Updating Filters.cpp from pains file
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") 
-- checking for module 'cairo'
-- checking for module 'cairo'
--   found cairo, version 1.14.8
--   found cairo, version 1.14.8
-- Found Cairo: /usr/include/cairo  
-- Found Cairo: /usr/include/cairo  
-- Boost version: 1.53.0
-- Boost version: 1.53.0
-- Found the following Boost libraries:
-- Found the following Boost libraries:
--   regex
--   regex
BUILDSTDERR: =====================================================================
BUILDSTDERR: =====================================================================
BUILDSTDERR: After building, check
BUILDSTDERR: After building, check
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: for correctness of installation paths. If everything is OK, gain 
BUILDSTDERR: for correctness of installation paths. If everything is OK, gain 
BUILDSTDERR: administrator privileges, stop the PostgreSQL service, run
BUILDSTDERR: administrator privileges, stop the PostgreSQL service, run
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/pgsql_install.sh
BUILDSTDERR: to install the PostgreSQL RDKit cartridge, then start again
BUILDSTDERR: to install the PostgreSQL RDKit cartridge, then start again
BUILDSTDERR: the PostgreSQL service
BUILDSTDERR: the PostgreSQL service
BUILDSTDERR: =====================================================================
BUILDSTDERR: =====================================================================
-- Configuring done
-- Configuring done
-- Generating done
-- Generating done
BUILDSTDERR: CMake Warning:
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BUILDSTDERR:   Manually-specified variables were not used by the project:
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_CXX_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_C_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     CMAKE_Fortran_FLAGS_RELEASE
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     INCLUDE_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     LIB_INSTALL_DIR
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SHARE_INSTALL_PREFIX
BUILDSTDERR:     SYSCONF_INSTALL_DIR
BUILDSTDERR:     SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers && /usr/bin/c++   -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers && /usr/bin/c++   -DEigenSolvers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/c++   -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/SparseBitVect.cpp
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testRDValue.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/c++   -DDataStructs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/MultiFPBReader.cpp
Linking CXX executable testRDValue
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRDValue.dir/testRDValue.cpp.o  -o testRDValue -rdynamic ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap/RDBase.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap/RDBase.cpp
Linking CXX shared library ../../lib/libRDKitDataStructs.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2017.09.3 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/testMatrices.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/testMatrices.cpp
Linking CXX executable testMatrices
Linking CXX executable testMatrices
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMatrices.dir/testMatrices.cpp.o  -o testMatrices -rdynamic ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/c++   -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/Catalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/c++   -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CatalogParams.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/c++   -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/c++   -DCatalogs_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CatalogEntry.cpp
Linking CXX shared library ../../lib/libRDKitCatalogs.so
Linking CXX shared library ../../lib/libRDKitCatalogs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2017.09.3 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2017.09.3 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so
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Scanning dependencies of target testQuery
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testQuery.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/test.cpp
Linking CXX executable testQuery
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -rdynamic ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testQuery.dir/test.cpp.o  -o testQuery -rdynamic ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp
Linking CXX executable testMatCalc
Linking CXX executable testMatCalc
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o  -o testMatCalc -rdynamic ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o  -o testMatCalc -rdynamic ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[  8%] Built target testMatCalc
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make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMetricMatrixCalc.so -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMetricMatrixCalc.so -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/DistPicker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/DistPicker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/MaxMinPicker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/MaxMinPicker.cpp
Linking CXX shared module ../../../rdkit/rdBase.so
Linking CXX shared module ../../../rdkit/rdBase.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdBase.so -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/HierarchicalClusterPicker.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/testChemicalFeatures.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testDatastructs.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Transform2D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Transform3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/UniformGrid3D.cpp
Linking CXX executable testDataStructs
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o  -o testDataStructs -rdynamic ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDGeometryLib_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/GridUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testMultiFPB.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testMultiFPB.cpp
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DataStructs.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DataStructs.cpp
Linking CXX executable testMultiFPB
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testGrid.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/DiscreteValueVect.cpp
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -rdynamic ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/SparseIntVect.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/SparseIntVect.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -rdynamic ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTransforms.dir/testTransforms.cpp.o  -o testTransforms -rdynamic ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target rdGeometry
Scanning dependencies of target rdGeometry
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[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/Point.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/Point.cpp
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[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/UniformGrid3D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/UniformGrid3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_SparseBV.cpp
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[ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/rdGeometry.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/rdGeometry.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdGeometry.so -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdGeometry.so -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/c++   -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/AlignPoints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/c++   -DAlignment_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/AlignPoints.cpp
Linking CXX shared library ../../../lib/libRDKitAlignment.so
Linking CXX shared library ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2017.09.3 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2017.09.3 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
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[ 14%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.cpp
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[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_BitOps.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 15%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/LinearSearch.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/LinearSearch.cpp
Linking CXX shared library ../../../lib/libRDKitOptimizer.so
Linking CXX shared library ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2017.09.3 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2017.09.3 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 15%] Built target Optimizer
[ 15%] Built target Optimizer
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target testSimDivPickers
Scanning dependencies of target testSimDivPickers
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/testPickers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/testPickers.cpp
Linking CXX executable testSimDivPickers
Linking CXX executable testSimDivPickers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o  -o testSimDivPickers -rdynamic ../../lib/libRDKitSimDivPickers.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKithc.so.1.2017.09.3 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o  -o testSimDivPickers -rdynamic ../../lib/libRDKitSimDivPickers.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKithc.so.1.2017.09.3 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target testSimDivPickers
[ 15%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSimDivPickers
Scanning dependencies of target rdSimDivPickers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 72
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 72
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
[ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_FPB.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/wrap_FPB.cpp
Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSimDivPickers.so -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2017.09.3 ../../../lib/libRDKithc.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSimDivPickers.so -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2017.09.3 ../../../lib/libRDKithc.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 16%] Built target rdSimDivPickers
[ 16%] Built target rdSimDivPickers
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
Scanning dependencies of target rdInfoTheory
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make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/testAlignment.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/QueryAtom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/QueryBond.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/Nonbonded.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/TorsionAngle.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/TorsionConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Aromaticity.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Aromaticity.cpp
Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/PositionConstraint.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/PositionConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/Params.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Kekulize.cpp
Linking CXX shared library ../../lib/libRDKitForceField.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ConjugHybrid.cpp
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2017.09.3 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2017.09.3 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 28%] Built target GraphMol
[ 28%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 28%] [FLEX][SmartsL] Building scanner with flex 2.5.37
[ 28%] [FLEX][SmartsL] Building scanner with flex 2.5.37
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmarts_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp smarts.ll
Scanning dependencies of target SubstructMatch
Scanning dependencies of target SubstructMatch
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 28%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 50
[ 28%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 50
Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructMatch.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructMatch.cpp
[ 29%] [BISON][SmilesY] Building parser with bison 3.0.4
[ 29%] [BISON][SmilesY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiles.tab.cpp smiles.yy
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 29%] [BISON][SmartsY] Building parser with bison 3.0.4
[ 29%] [BISON][SmartsY] Building parser with bison 3.0.4
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/bison -pyysmiles_ -d -pyysmarts_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp smarts.yy
BUILDSTDERR: smarts.yy: warning: 92 shift/reduce conflicts [-Wconflicts-sr]
BUILDSTDERR: smarts.yy: warning: 92 shift/reduce conflicts [-Wconflicts-sr]
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 29%] [FLEX][SmilesL] Building scanner with flex 2.5.37
[ 29%] [FLEX][SmilesL] Building scanner with flex 2.5.37
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/flex -Pyysmiles_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp smiles.ll
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
Scanning dependencies of target SmilesParse
Scanning dependencies of target SmilesParse
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
[ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParse.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 51
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 51
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
[ 30%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/SubstructUtils.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: In function 'void SmilesParseOps::AdjustAtomChiralityFlags(RDKit::RWMol*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp: In function 'void SmilesParseOps::AdjustAtomChiralityFlags(RDKit::RWMol*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:320:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:320:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        if (selfPos->first != static_cast<int>((*atomIt)->getIdx())) {
BUILDSTDERR:        if (selfPos->first != static_cast<int>((*atomIt)->getIdx())) {
BUILDSTDERR:                                                                  ^
BUILDSTDERR:                                                                  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:10:
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:10:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:323:77: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp:323:77: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        CHECK_INVARIANT(selfPos->first == static_cast<int>((*atomIt)->getIdx()),
BUILDSTDERR:        CHECK_INVARIANT(selfPos->first == static_cast<int>((*atomIt)->getIdx()),
BUILDSTDERR:                                                                              ^
BUILDSTDERR:                                                                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:100:9: note: in definition of macro 'CHECK_INVARIANT'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:100:9: note: in definition of macro 'CHECK_INVARIANT'
BUILDSTDERR:    if (!(expr)) {                                                       \
BUILDSTDERR:    if (!(expr)) {                                                       \
BUILDSTDERR:          ^
BUILDSTDERR:          ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmilesWrite.cpp
Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 30%] Built target SubstructMatch
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target MolTransforms
Scanning dependencies of target MolTransforms
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 30%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
[ 30%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DMolTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/MolTransforms.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
[ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:599:13: warning: unused parameter 'atomToLeftIdx' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/SmartsWrite.cpp:599:13: warning: unused parameter 'atomToLeftIdx' [-Wunused-parameter]
BUILDSTDERR:  std::string getNonQueryBondSmarts(const QueryBond *qbond, int atomToLeftIdx) {
BUILDSTDERR:  std::string getNonQueryBondSmarts(const QueryBond *qbond, int atomToLeftIdx) {
BUILDSTDERR:              ^
BUILDSTDERR:              ^
Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
Linking CXX shared library ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Built target MolTransforms
[ 30%] Built target MolTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
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BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmiles_error( const char *input,
BUILDSTDERR:  yysmiles_error( const char *input,
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'branchPoints' [-Wunused-parameter]
BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'branchPoints' [-Wunused-parameter]
BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR: smiles.yy:38:1: warning: unused parameter 'scanner' [-Wunused-parameter]
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smarts.tab.cpp
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[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
[ 32%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/GasteigerParams.cpp
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'input' [-Wunused-parameter]
BUILDSTDERR:  yysmarts_error( const char *input,
BUILDSTDERR:  yysmarts_error( const char *input,
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR: smarts.yy:25:1: warning: unused parameter 'scanner' [-Wunused-parameter]
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp
Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
Linking CXX shared library ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
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[ 32%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/AlignMolecules.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'yy_buffer_state* yysmiles__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: In function 'yy_buffer_state* yysmiles__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2742:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2742:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2763:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:2763:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:              ^
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3095:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3095:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysmiles_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysmiles_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3100:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3100:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysmiles_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysmiles_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3112:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp:3112:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void yysmiles_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:  void yysmiles_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp
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[ 32%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'yy_buffer_state* yysmarts__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: In function 'yy_buffer_state* yysmarts__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2414:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2414:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2475:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2475:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:              ^
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2807:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2807:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysmarts_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysmarts_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2812:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2812:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysmarts_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysmarts_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2824:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp:2824:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void yysmarts_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:  void yysmarts_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
Linking CXX shared library ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
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[ 32%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp
Linking CXX shared library ../../../lib/libRDKitMolAlign.so
Linking CXX shared library ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2017.09.3 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2017.09.3 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolTransforms.so -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolTransforms.so -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp
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[ 33%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 49
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[ 34%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
[ 34%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp
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[ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
[ 34%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DMolChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp
Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
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[ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
[ 35%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp
Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DMolCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp
Linking CXX shared library ../../../lib/libRDKitMolCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so
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make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/flex -Pyysln_ -o/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp sln.ll
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/bison -pyysln_ -d -o /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.cpp sln.yy
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
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Linking CXX shared library ../../../lib/libRDKitTrajectory.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdqueries.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/SLNAttribs.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/Queries.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.cpp
BUILDSTDERR: sln.yy:54:0: warning: "YYDEBUG" redefined [enabled by default]
BUILDSTDERR: sln.yy:54:0: warning: "YYDEBUG" redefined [enabled by default]
BUILDSTDERR:  #define YYDEBUG 1
BUILDSTDERR:  #define YYDEBUG 1
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: In file included from sln.yy:50:0:
BUILDSTDERR: In file included from sln.yy:50:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37:0: note: this is the location of the previous definition
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/sln.tab.hpp:37:0: note: this is the location of the previous definition
BUILDSTDERR:  # define YYDEBUG 0
BUILDSTDERR:  # define YYDEBUG 0
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'ms' [-Wunused-parameter]
BUILDSTDERR:  yysln_error( const char *input,
BUILDSTDERR:  yysln_error( const char *input,
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'doQ' [-Wunused-parameter]
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'doQ' [-Wunused-parameter]
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'scanner' [-Wunused-parameter]
BUILDSTDERR: sln.yy:57:1: warning: unused parameter 'scanner' [-Wunused-parameter]
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp
Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/Trajectory.cpp
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BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'yy_buffer_state* yysln__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'yy_buffer_state* yysln__scan_bytes(const char*, yy_size_t, yyscan_t)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2526:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2526:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:   for ( i = 0; i < _yybytes_len; ++i )
BUILDSTDERR:                    ^
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2587:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2587:13: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:  static void yy_fatal_error (yyconst char* msg , yyscan_t yyscanner)
BUILDSTDERR:              ^
BUILDSTDERR:              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2919:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2919:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysln_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysln_alloc (yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2924:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2924:7: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void *yysln_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:  void *yysln_realloc  (void * ptr, yy_size_t  size , yyscan_t yyscanner)
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2936:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/lex.yysln.cpp:2936:6: warning: unused parameter 'yyscanner' [-Wunused-parameter]
BUILDSTDERR:  void yysln_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:  void yysln_free (void * ptr , yyscan_t yyscanner)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
Linking CXX shared library ../../../lib/libRDKitSLNParse.so
Linking CXX shared library ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdChemicalFeatures.so -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/MolFileStereochem.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/MolFileWriter.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDMolSupplier.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SDWriter.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++   -DForceFieldHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so
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make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
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[ 42%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/itertest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/itertest.cpp
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[ 42%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SmilesWriter.cpp
Linking CXX executable graphmolIterTest
Linking CXX executable graphmolIterTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMemTest1
Scanning dependencies of target graphmolMemTest1
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[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/memtest1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/memtest1.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
Linking CXX executable graphmolMemTest1
Linking CXX executable graphmolMemTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o  -o graphmolMemTest1 -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
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[ 43%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/cptest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/cptest.cpp
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[ 43%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TDTWriter.cpp
Linking CXX executable graphmolcpTest
Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
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[ 44%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/querytest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/querytest.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileParser.cpp
Linking CXX executable graphmolqueryTest
Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
Scanning dependencies of target graphmoltestCanon
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make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
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[ 45%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testCanon.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testCanon.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/TplFileWriter.cpp
Linking CXX executable graphmoltestCanon
Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 45%] Built target graphmoltestCanon
[ 45%] Built target graphmoltestCanon
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
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[ 45%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBParser.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBParser.cpp:24:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBParser.cpp:24:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^
BUILDSTDERR:                      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 45%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/PDBWriter.cpp
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[ 46%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
[ 46%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
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BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.cpp:10:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/ProximityBonds.h:16:21: warning: 'RDKit::ctdALL_FLAGS' defined but not used [-Wunused-variable]
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:  static unsigned int ctdALL_FLAGS = 0xFFFFFFFF;
BUILDSTDERR:                      ^
BUILDSTDERR:                      ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/SequenceWriters.cpp
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -rdynamic ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/smaTest1.dir/smatest.cpp.o  -o smaTest1 -rdynamic ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target FilterCatalog
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[ 49%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Filters.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Filters.cpp
Linking CXX shared library ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/Fingerprints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/Fingerprints.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 50%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DFilterCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp
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[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target testChemTransforms
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
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[ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/AtomPairs.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/AtomPairs.cpp
Linking CXX executable testChemTransforms
Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -rdynamic ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -rdynamic ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test1.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MACCS.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/MACCS.cpp
Linking CXX shared library ../../../lib/libRDKitFingerprints.so
Linking CXX shared library ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test2.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/boost-numeric-bindings    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/test2.cpp
Linking CXX executable testSubgraphs1
Linking CXX executable testSubgraphs1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -rdynamic ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs1.dir/test1.cpp.o  -o testSubgraphs1 -rdynamic ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
Scanning dependencies of target filterCatalogTest
Scanning dependencies of target filterCatalogTest
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp
Linking CXX executable testSubgraphs2
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -rdynamic ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -rdynamic ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
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[ 53%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp
Linking CXX executable filterCatalogTest
Linking CXX executable filterCatalogTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -rdynamic ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o  -o filterCatalogTest -rdynamic ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
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[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp
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[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
[ 54%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatParams.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragCatParams.cpp
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[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
[ 55%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
Linking CXX shared library ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 55%] Built target FragCatalog
[ 55%] Built target FragCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testFingerprints
Scanning dependencies of target testFingerprints
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[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
[ 55%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/test1.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfiltercatalog.so -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfiltercatalog.so -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
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[ 55%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/test1.cpp
Linking CXX executable testPartialCharges
Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -rdynamic ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -rdynamic ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
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[ 55%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/test1.cpp
Linking CXX executable testMolTransforms
Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -rdynamic ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -rdynamic ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
Scanning dependencies of target rdForceFieldHelpers
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make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
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[ 56%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
[ 56%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
Linking CXX executable testFingerprints
Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -rdynamic ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -rdynamic ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
Linking CXX executable testFeatures
Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -rdynamic ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -rdynamic ../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
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[ 56%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceFieldHelpers.so -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceFieldHelpers.so -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testShapeHelpers
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[ 56%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
[ 56%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 69
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[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
Linking CXX executable testShapeHelpers
Linking CXX executable testShapeHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -rdynamic ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -rdynamic ../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 57%] Built target testShapeHelpers
[ 57%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdShapeHelpers
Scanning dependencies of target rdShapeHelpers
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[ 57%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
[ 57%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdShapeHelpers.so -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdShapeHelpers.so -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 57%] Built target rdShapeHelpers
[ 57%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolCatalog
Scanning dependencies of target testMolCatalog
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[ 57%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
[ 57%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/test1.cpp
Linking CXX executable testMolCatalog
Linking CXX executable testMolCatalog
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -rdynamic ../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 57%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
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Scanning dependencies of target rdMolCatalog
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[ 57%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
[ 57%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolChemicalFeatures.so -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolChemicalFeatures.so -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 57%] Built target rdMolChemicalFeatures
[ 57%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
Scanning dependencies of target FMCS
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[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/FMCS.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/FMCS.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolCatalog.so -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolCatalog.so -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Built target rdMolCatalog
[ 58%] Built target rdMolCatalog
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target MMPA
Scanning dependencies of target MMPA
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 58%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
[ 58%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DMMPA_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA.cpp
Linking CXX shared library ../../../lib/libRDKitMMPA.so
Linking CXX shared library ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2017.09.3 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2017.09.3 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 58%] Built target MMPA
[ 58%] Built target MMPA
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target testReducedGraphs
Scanning dependencies of target testReducedGraphs
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make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/test1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Seed.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Seed.cpp
Linking CXX executable testReducedGraphs
Linking CXX executable testReducedGraphs
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -rdynamic ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReducedGraphs.dir/test1.cpp.o  -o testReducedGraphs -rdynamic ../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 58%] Built target testReducedGraphs
[ 58%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
Scanning dependencies of target rdReducedGraphs
Scanning dependencies of target rdReducedGraphs
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
[ 58%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
[ 58%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdReducedGraphs.so -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdReducedGraphs.so -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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[ 58%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target trajectoryTest
Scanning dependencies of target trajectoryTest
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[ 59%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
[ 59%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest.cpp
Linking CXX executable trajectoryTest
Linking CXX executable trajectoryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -rdynamic ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o  -o trajectoryTest -rdynamic ../../../lib/libRDKitTrajectory.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 59%] Built target trajectoryTest
[ 59%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target SubstructLibrary
Scanning dependencies of target SubstructLibrary
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[ 60%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
[ 60%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
[ 60%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'std::vector<unsigned int> RDKit::{anonymous}::internalGetMatches(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'std::vector<unsigned int> RDKit::{anonymous}::internalGetMatches(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:150:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:150:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (endIdx < numThreads) numThreads = endIdx;
BUILDSTDERR:    if (endIdx < numThreads) numThreads = endIdx;
BUILDSTDERR:                 ^
BUILDSTDERR:                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'int RDKit::{anonymous}::internalMatchCounter(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp: In function 'int RDKit::{anonymous}::internalMatchCounter(const RDKit::ROMol&, RDKit::MolHolderBase&, const RDKit::FPHolderBase*, unsigned int, unsigned int, bool, bool, bool, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:203:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp:203:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    if (endIdx < numThreads) numThreads = endIdx;
BUILDSTDERR:    if (endIdx < numThreads) numThreads = endIdx;
BUILDSTDERR:                 ^
BUILDSTDERR:                 ^
Linking CXX shared library ../../../lib/libRDKitFMCS.so
Linking CXX shared library ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2017.09.3 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2017.09.3 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  15
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[ 60%] Built target FMCS
[ 60%] Built target FMCS
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
Scanning dependencies of target testSLNParse
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make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
[ 60%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/test.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/test.cpp
Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 60%] Built target SubstructLibrary
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
Scanning dependencies of target rdSLNParse
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdchem.cpp
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -rdynamic ../../../lib/libRDKitSLNParse.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_regex-mt ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdmolfiles.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/Atom.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/SDMolSupplier.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/TDTMolSupplier.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/RingInfo.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdinchi_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdinchi.dir/pyInchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap/pyInchi.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp: In function 'void RDKit::Descriptors::{anonymous}::get2DautocorrelationDesc(double*, int, const RDKit::ROMol&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp: In function 'void RDKit::Descriptors::{anonymous}::get2DautocorrelationDesc(double*, int, const RDKit::ROMol&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:60:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:60:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:                                 ^
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:69:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:69:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:                                 ^
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:77:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:77:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:    for (unsigned int i = 0; i < numAtoms; i++) {
BUILDSTDERR:                                 ^
BUILDSTDERR:                                 ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:92:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:92:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (unsigned int i = 0; i < numAtoms; ++i) {
BUILDSTDERR:      for (unsigned int i = 0; i < numAtoms; ++i) {
BUILDSTDERR:                                   ^
BUILDSTDERR:                                   ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:93:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp:93:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:        for (unsigned int j = i + 1; j < numAtoms; ++j) {
BUILDSTDERR:        for (unsigned int j = i + 1; j < numAtoms; ++j) {
BUILDSTDERR:                                         ^
BUILDSTDERR:                                         ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdinchi.so -o ../../../rdkit/Chem/rdinchi.so CMakeFiles/rdinchi.dir/pyInchi.cpp.o ../../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/USRDescriptor.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/testUFFForceField.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/testUFFForceField.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/PBF.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/PBF.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/PMI.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/PMI.cpp
Linking CXX executable testUFFForceField
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -rdynamic ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o  -o testUFFForceField -rdynamic ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeometry
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/DistGeomUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/DistGeomUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/TriangleSmooth.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/TriangleSmooth.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp: In function 'void RDKit::Descriptors::AUTOCORR3D(const RDKit::ROMol&, std::vector<double>&, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp: In function 'void RDKit::Descriptors::AUTOCORR3D(const RDKit::ROMol&, std::vector<double>&, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp:182:20: warning: unused variable 'conf' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp:182:20: warning: unused variable 'conf' [-Wunused-variable]
BUILDSTDERR:    const Conformer& conf = mol.getConformer(confId);
BUILDSTDERR:    const Conformer& conf = mol.getConformer(confId);
BUILDSTDERR:                     ^
BUILDSTDERR:                     ^
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[ 70%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/DistViolationContrib.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/DistViolationContrib.cpp
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[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 70%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/ChiralViolationContrib.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DDistGeometry_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/ChiralViolationContrib.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::{anonymous}::getRDFDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::{anonymous}::getRDFDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:86:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:86:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < R.size(); i++) {
BUILDSTDERR:    for (int i = 0; i < R.size(); i++) {
BUILDSTDERR:                               ^
BUILDSTDERR:                               ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:67:7: warning: unused variable 'confId' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:67:7: warning: unused variable 'confId' [-Wunused-variable]
BUILDSTDERR:    int confId = conf.getId();
BUILDSTDERR:    int confId = conf.getId();
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::RDF(const RDKit::ROMol&, std::vector<double>&, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp: In function 'void RDKit::Descriptors::RDF(const RDKit::ROMol&, std::vector<double>&, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:164:7: warning: unused variable 'numAtoms' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/RDF.cpp:164:7: warning: unused variable 'numAtoms' [-Wunused-variable]
BUILDSTDERR:    int numAtoms = mol.getNumAtoms();
BUILDSTDERR:    int numAtoms = mol.getNumAtoms();
BUILDSTDERR:        ^
BUILDSTDERR:        ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp
Linking CXX shared library ../../lib/libRDKitDistGeometry.so
Linking CXX shared library ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2017.09.3 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2017.09.3 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
[ 70%] Built target DistGeometry
[ 70%] Built target DistGeometry
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceField
Scanning dependencies of target rdForceField
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make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 70%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/ForceField.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/ForceField.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'std::vector<double> RDKit::Descriptors::{anonymous}::prepareIState(const RDKit::ROMol&, const RDKit::Conformer&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'std::vector<double> RDKit::Descriptors::{anonymous}::prepareIState(const RDKit::ROMol&, const RDKit::Conformer&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:59:7: warning: unused variable 'numAtoms' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:59:7: warning: unused variable 'numAtoms' [-Wunused-variable]
BUILDSTDERR:    int numAtoms = conf.getNumAtoms();
BUILDSTDERR:    int numAtoms = conf.getNumAtoms();
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:60:7: warning: unused variable 'confId' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:60:7: warning: unused variable 'confId' [-Wunused-variable]
BUILDSTDERR:    int confId = conf.getId();
BUILDSTDERR:    int confId = conf.getId();
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'void RDKit::Descriptors::{anonymous}::getMORSEDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp: In function 'void RDKit::Descriptors::{anonymous}::getMORSEDesc(double*, const RDKit::ROMol&, const RDKit::Conformer&, std::vector<double>&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:87:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/MORSE.cpp:87:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < R.size(); i++) {
BUILDSTDERR:    for (int i = 0; i < R.size(); i++) {
BUILDSTDERR:                               ^
BUILDSTDERR:                               ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o
[ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:119:6: warning: unused parameter 'n' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:119:6: warning: unused parameter 'n' [-Wunused-parameter]
BUILDSTDERR:  bool IsClose2(double a, double b, unsigned int n) {
BUILDSTDERR:  bool IsClose2(double a, double b, unsigned int n) {
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:158:6: warning: unused parameter 'n' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/GETAWAY.cpp:158:6: warning: unused parameter 'n' [-Wunused-parameter]
BUILDSTDERR:  bool IsClose3(double a, double b, unsigned int n) {
BUILDSTDERR:  bool IsClose3(double a, double b, unsigned int n) {
BUILDSTDERR:       ^
BUILDSTDERR:       ^
Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceField.so -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceField.so -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 70%] Built target rdForceField
[ 70%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeom
Scanning dependencies of target testDistGeom
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
[ 70%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 13
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 13
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o
[ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/WHIM.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/WHIM.cpp
Linking CXX executable testDistGeom
Linking CXX executable testDistGeom
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -rdynamic ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -rdynamic ../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target testDistGeom
[ 71%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeom
Scanning dependencies of target DistGeom
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
[ 71%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/c++   -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/DistGeom.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/c++   -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/DistGeom.cpp
Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,DistGeom.so -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,DistGeom.so -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target DistGeom
[ 71%] Built target DistGeom
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolMolOpsTest
Scanning dependencies of target graphmolMolOpsTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp
Linking CXX shared library ../../../lib/libRDKitDescriptors.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2017.09.3 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2017.09.3 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  9 10 11 12 13
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[ 71%] Built target Descriptors
[ 71%] Built target Descriptors
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
Scanning dependencies of target graphmolTest1
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make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test1.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp: In function 'void testGithub1281()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp:6911:16: warning: unused variable 'm' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molopstest.cpp:6911:16: warning: unused variable 'm' [-Wunused-variable]
BUILDSTDERR:          RWMol *m = SmilesToMol(smiles);
BUILDSTDERR:          RWMol *m = SmilesToMol(smiles);
BUILDSTDERR:                 ^
BUILDSTDERR:                 ^
Linking CXX executable graphmolTest1
Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -rdynamic ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -rdynamic ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../lib/libRDKitForceField.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 71%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
Scanning dependencies of target graphmoltestChirality
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make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
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[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testChirality.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testChirality.cpp
Linking CXX executable graphmoltestChirality
Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target graphmoltestChirality
[ 71%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPickler
Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
[ 71%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPickler.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPickler.cpp
Linking CXX executable graphmolMolOpsTest
Linking CXX executable graphmolMolOpsTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o  -o graphmolMolOpsTest -rdynamic ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 71%] Built target graphmolMolOpsTest
[ 71%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestPicklerGlobalSetting
Scanning dependencies of target graphmoltestPicklerGlobalSetting
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 62
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 62
[ 72%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
[ 72%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testPicklerGlobalSettings.cpp:256:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable graphmoltestPickler
Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 72%] Built target graphmoltestPickler
[ 72%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
Scanning dependencies of target hanoiTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 72%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
[ 72%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoitest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoitest.cpp
Linking CXX executable graphmoltestPicklerGlobalSetting
Linking CXX executable graphmoltestPicklerGlobalSetting
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o  -o graphmoltestPicklerGlobalSetting -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 72%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
Scanning dependencies of target molBundleTest
Scanning dependencies of target molBundleTest
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 73%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
[ 73%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testMolBundle.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/testMolBundle.cpp
Linking CXX executable molBundleTest
Linking CXX executable molBundleTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o  -o molBundleTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 73%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
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Scanning dependencies of target resMolSupplierTest
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest.cpp
Linking CXX executable hanoiTest
Linking CXX executable hanoiTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/hanoiTest.dir/hanoitest.cpp.o  -o hanoiTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor.cpp
Linking CXX executable resMolSupplierTest
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o  -o resMolSupplierTest -rdynamic ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp
Linking CXX executable testDepictor
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -rdynamic ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -rdynamic ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmiles_test.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o  -o cxsmilesTest -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDepictor.so -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDepictor.so -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
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Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/test.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/smiTest1.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/test.cpp
[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/test1.cpp
Linking CXX executable smiTest1
Linking CXX executable smiTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/smiTest1.dir/test.cpp.o  -o smiTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
Scanning dependencies of target testMol2ToMol
Scanning dependencies of target testMol2ToMol
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol.cpp
Linking CXX executable fileParsersTest1
Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 75%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
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Scanning dependencies of target testMolSupplier
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make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier.cpp
Linking CXX executable testMol2ToMol
Linking CXX executable testMol2ToMol
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o  -o testMol2ToMol -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 75%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
Scanning dependencies of target testMolWriter
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[ 75%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter.cpp
Linking CXX executable testMolSupplier
Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 75%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
Scanning dependencies of target testSequence
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make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
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[ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence.cpp
Linking CXX executable testMolWriter
Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 76%] Built target testMolWriter
[ 76%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
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[ 76%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTpls.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTpls.cpp
Linking CXX executable testSequence
Linking CXX executable testSequence
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSequence.dir/testSequence.cpp.o  -o testSequence -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
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[ 76%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/test1.cpp
Linking CXX executable testTplParser
Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 76%] Built target testTplParser
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 1
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[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Reaction.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Reaction.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/MDLParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/MDLParser.cpp
Linking CXX executable testSubstructMatch
Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -rdynamic ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target testFragCatalog
Scanning dependencies of target testFragCatalog
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[ 78%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
[ 78%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/test1.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
[ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/DaylightParser.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/DaylightParser.cpp
Linking CXX executable testFragCatalog
Linking CXX executable testFragCatalog
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -rdynamic ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFragCatalog.dir/test1.cpp.o  -o testFragCatalog -rdynamic ../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 78%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
Scanning dependencies of target rdfragcatalog
Scanning dependencies of target rdfragcatalog
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make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionPickler.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionPickler.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionWriter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionWriter.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionDepict.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionUtils.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/MoleculeParser.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
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[ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/ReactionRunner.cpp
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfragcatalog.so -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/test3D.dir/test3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test3D.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp
Linking CXX executable test3D
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/test3D.dir/test3D.cpp.o  -o test3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/test3D.dir/test3D.cpp.o  -o test3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR2D
Scanning dependencies of target testAUTOCORR2D
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[ 81%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp:87:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testAUTOCORR2D
Linking CXX executable testAUTOCORR2D
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o  -o testAUTOCORR2D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 81%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
Scanning dependencies of target testAUTOCORR3D
Scanning dependencies of target testAUTOCORR3D
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o
[ 82%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
[ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D.cpp:85:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testAUTOCORR3D
Linking CXX executable testAUTOCORR3D
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR3D.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o  -o testAUTOCORR3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAUTOCORR3D.dir/testAUTOCORR3D.cpp.o  -o testAUTOCORR3D -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  86
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  86
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[ 82%] Built target testAUTOCORR3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp
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[ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp
Linking CXX executable testDescriptors
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -rdynamic ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp
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BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY.cpp:106:5: warning: unused parameter 'argv' [-Wunused-parameter]
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp
Linking CXX executable testGETAWAY
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGETAWAY.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGETAWAY.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o  -o testGETAWAY -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGETAWAY.dir/testGETAWAY.cpp.o  -o testGETAWAY -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 83%] Built target testGETAWAY
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
Scanning dependencies of target testMORSE
Scanning dependencies of target testMORSE
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make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/testMORSE.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMORSE.dir/testMORSE.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RDKitBase.h:20:0,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h:35,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h:36,
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:32:
BUILDSTDERR:                  from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:32:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp: In member function 'virtual void RDKit::EvenSamplePairsStrategy::initializeStrategy(const RDKit::ChemicalReaction&, const BBS&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp: In member function 'virtual void RDKit::EvenSamplePairsStrategy::initializeStrategy(const RDKit::ChemicalReaction&, const BBS&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:69:37: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp:69:37: warning: comparison of unsigned expression >= 0 is always true [-Wtype-limits]
BUILDSTDERR:    PRECONDITION(m_numPermutations >= 0,
BUILDSTDERR:    PRECONDITION(m_numPermutations >= 0,
BUILDSTDERR:                                      ^
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:108:9: note: in definition of macro 'PRECONDITION'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/Invariant.h:108:9: note: in definition of macro 'PRECONDITION'
BUILDSTDERR:    if (!(expr)) {                                                           \
BUILDSTDERR:    if (!(expr)) {                                                           \
BUILDSTDERR:          ^
BUILDSTDERR:          ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: In function 'void testMORSE()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: In function 'void testMORSE()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:67:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:67:37: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < dmorse.size(); i++) {
BUILDSTDERR:      for (int i = 0; i < dmorse.size(); i++) {
BUILDSTDERR:                                      ^
BUILDSTDERR:                                      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE.cpp:100:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testMORSE
Linking CXX executable testMORSE
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMORSE.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMORSE.dir/testMORSE.cpp.o  -o testMORSE -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMORSE.dir/testMORSE.cpp.o  -o testMORSE -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 83%] Built target testMORSE
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
Scanning dependencies of target testPBF
Scanning dependencies of target testPBF
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make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/testPBF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPBF.dir/testPBF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testPBF.dir/testPBF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp
Linking CXX shared library ../../../lib/libRDKitChemReactions.so
Linking CXX shared library ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so
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[ 83%] Built target ChemReactions
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
Scanning dependencies of target testRDF
Scanning dependencies of target testRDF
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o
[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/testRDF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRDF.dir/testRDF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  main(int argc, char *argv[])
BUILDSTDERR:  main(int argc, char *argv[])
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF.cpp:117:1: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: In function 'void testRDF()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: In function 'void testRDF()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:63:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:63:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < drdf.size(); i++) {
BUILDSTDERR:      for (int i = 0; i < drdf.size(); i++) {
BUILDSTDERR:                                    ^
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF.cpp:96:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testPBF
Linking CXX executable testPBF
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPBF.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPBF.dir/testPBF.cpp.o  -o testPBF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPBF.dir/testPBF.cpp.o  -o testPBF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 83%] Built target testPBF
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
Scanning dependencies of target testWHIM
Scanning dependencies of target testWHIM
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 83%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/testWHIM.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testWHIM.dir/testWHIM.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp
Linking CXX executable testRDF
Linking CXX executable testRDF
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDF.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDF.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRDF.dir/testRDF.cpp.o  -o testRDF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRDF.dir/testRDF.cpp.o  -o testRDF -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testRDF
[ 83%] Built target testRDF
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
Scanning dependencies of target rdMolDescriptors
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
[ 83%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM.cpp:184:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable testWHIM
Linking CXX executable testWHIM
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testWHIM.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testWHIM.dir/testWHIM.cpp.o  -o testWHIM -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testWHIM.dir/testWHIM.cpp.o  -o testWHIM -rdynamic ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testWHIM
[ 83%] Built target testWHIM
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
[ 83%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolAlign.so -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolAlign.so -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
Scanning dependencies of target MolDraw2D
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[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:405:6: warning: unused parameter 'opts' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:405:6: warning: unused parameter 'opts' [-Wunused-parameter]
BUILDSTDERR:  void get2DCoordsForReaction(ChemicalReaction &rxn, const MolDrawOptions &opts,
BUILDSTDERR:  void get2DCoordsForReaction(ChemicalReaction &rxn, const MolDrawOptions &opts,
BUILDSTDERR:       ^
BUILDSTDERR:       ^
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[ 83%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp:71:6: warning: unused parameter 'col2' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp:71:6: warning: unused parameter 'col2' [-Wunused-parameter]
BUILDSTDERR:  void MolDraw2DSVG::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
BUILDSTDERR:  void MolDraw2DSVG::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
BUILDSTDERR:       ^
BUILDSTDERR:       ^
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[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
[ 84%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDescriptors.so -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDescriptors.so -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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[ 84%] Built target rdMolDescriptors
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
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Scanning dependencies of target testFMCS
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS_Unit.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp:60:6: warning: unused parameter 'col2' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DCairo.cpp:60:6: warning: unused parameter 'col2' [-Wunused-parameter]
BUILDSTDERR:  void MolDraw2DCairo::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
BUILDSTDERR:  void MolDraw2DCairo::drawWavyLine(const Point2D &cds1, const Point2D &cds2,
BUILDSTDERR:       ^
BUILDSTDERR:       ^
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp
Linking CXX executable testFMCS
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -rdynamic ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 85%] Built target MolDraw2D
[ 85%] Built target MolDraw2D
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
Scanning dependencies of target FMCStest
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[ 86%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
[ 86%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/testFMCS.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/testFMCS.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdFMCS.so -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdFMCS.so -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 86%] Built target rdFMCS
[ 86%] Built target rdFMCS
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target MolHash
Scanning dependencies of target MolHash
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make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 86%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
[ 86%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/MolHash.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/MolHash.cpp
Linking CXX executable FMCStest
Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -rdynamic ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -rdynamic ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 86%] Built target FMCStest
[ 86%] Built target FMCStest
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMPA
Scanning dependencies of target testMMPA
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[ 86%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
[ 86%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/MMPA_UnitTest.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 42
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[ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
[ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/HashToString.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/HashToString.cpp
Linking CXX shared library ../../../lib/libRDKitMolHash.so
Linking CXX shared library ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2017.09.3 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2017.09.3 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 87%] Built target MolHash
[ 87%] Built target MolHash
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMMPA
Scanning dependencies of target rdMMPA
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make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 87%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
[ 87%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp
Linking CXX executable testMMPA
Linking CXX executable testMMPA
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -rdynamic ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o  -o testMMPA -rdynamic ../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 87%] Built target testMMPA
[ 87%] Built target testMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target StructChecker
Scanning dependencies of target StructChecker
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 53
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 53
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp: In member function 'unsigned int RDKit::StructureCheck::StructChecker::checkMolStructure(RDKit::RWMol&) const':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp: In member function 'unsigned int RDKit::StructureCheck::StructChecker::checkMolStructure(RDKit::RWMol&) const':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:51:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:51:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:           ^
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:60:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:60:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:68:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:68:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:           ^
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:77:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:77:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:85:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:85:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:           ^
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:122:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:122:10: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:        if (Options.Verbose)
BUILDSTDERR:           ^
BUILDSTDERR:           ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:130:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructChecker.cpp:130:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
[ 88%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMMPA.so -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMMPA.so -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Built target rdMMPA
[ 88%] Built target rdMMPA
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target substructLibraryTest
Scanning dependencies of target substructLibraryTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::parseOptionsJSON(const string&, RDKit::StructureCheck::StructCheckerOptions&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:33:19: warning: unused variable 'iss' [-Wunused-variable]
BUILDSTDERR:      std::istream &iss = ss;
BUILDSTDERR:      std::istream &iss = ss;
BUILDSTDERR:                    ^
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:356:12: warning: unused variable 'k' [-Wunused-variable]
BUILDSTDERR:    unsigned k = fscanf(fp, "%d", &n);
BUILDSTDERR:    unsigned k = fscanf(fp, "%d", &n);
BUILDSTDERR:             ^
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:666:6: warning: unused parameter 'path' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:666:6: warning: unused parameter 'path' [-Wunused-parameter]
BUILDSTDERR:  bool loadChargeDataTables(const std::string &path) {
BUILDSTDERR:  bool loadChargeDataTables(const std::string &path) {
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:  int main(int argc, char *argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp:191:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX executable substructLibraryTest
Linking CXX executable substructLibraryTest
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -rdynamic ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o  -o substructLibraryTest -rdynamic ../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 88%] Built target substructLibraryTest
[ 88%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSubstructLibrary
Scanning dependencies of target rdSubstructLibrary
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 88%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructureFlags.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/StructureFlags.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Utilites.cpp
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[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'void RDKit::StructureCheck::applyAtomSymbolList(RDKit::RWMol&, std::string, RDKit::Atom&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'void RDKit::StructureCheck::applyAtomSymbolList(RDKit::RWMol&, std::string, RDKit::Atom&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:96:15: warning: unused variable 'atsym' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:96:15: warning: unused variable 'atsym' [-Wunused-variable]
BUILDSTDERR:    const char *atsym = symbol.c_str();
BUILDSTDERR:    const char *atsym = symbol.c_str();
BUILDSTDERR:                ^
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::TransformAugmentedAtoms(RDKit::RWMol&, const std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::TransformAugmentedAtoms(RDKit::RWMol&, const std::vector<std::pair<RDKit::StructureCheck::AugmentedAtom, RDKit::StructureCheck::AugmentedAtom> >&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:216:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:216:11: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:          if(verbose)
BUILDSTDERR:          if(verbose)
BUILDSTDERR:            ^
BUILDSTDERR:            ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::RecMatch(const RDKit::ROMol&, unsigned int, const RDKit::StructureCheck::AugmentedAtom&, const std::vector<RDKit::StructureCheck::Neighbourhood>&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::RecMatch(const RDKit::ROMol&, unsigned int, const RDKit::StructureCheck::AugmentedAtom&, const std::vector<RDKit::StructureCheck::Neighbourhood>&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:374:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:374:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (verbose)
BUILDSTDERR:      if (verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::CheckAtoms(const RDKit::ROMol&, const std::vector<RDKit::StructureCheck::AugmentedAtom>&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp: In function 'bool RDKit::StructureCheck::CheckAtoms(const RDKit::ROMol&, const std::vector<RDKit::StructureCheck::AugmentedAtom>&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:546:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:546:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:          if (verbose && //j >= 12 && j <= 21 &&
BUILDSTDERR:          if (verbose && //j >= 12 && j <= 21 &&
BUILDSTDERR:             ^
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:555:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:555:12: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:          if (verbose && //j >= 12 && j <= 21 &&
BUILDSTDERR:          if (verbose && //j >= 12 && j <= 21 &&
BUILDSTDERR:             ^
BUILDSTDERR:             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:588:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Pattern.cpp:588:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (verbose && nmatch == prevn)  // UNMATCHED atom
BUILDSTDERR:      if (verbose && nmatch == prevn)  // UNMATCHED atom
BUILDSTDERR:         ^
BUILDSTDERR:         ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
[ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSubstructLibrary.so -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSubstructLibrary.so -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  73
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make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target RGroupDecomposition
Scanning dependencies of target RGroupDecomposition
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::DubiousStereochemistry(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::DubiousStereochemistry(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:136:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:136:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR:             n_ligands > 2 && n_ligands <= 4) &&
BUILDSTDERR:             n_ligands > 2 && n_ligands <= 4) &&
BUILDSTDERR:                                              ^
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::FixDubious3DMolecule(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::FixDubious3DMolecule(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:222:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:222:56: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR:            RDKit::Bond::BEGINDASH == bond->getBondDir() &&
BUILDSTDERR:            RDKit::Bond::BEGINDASH == bond->getBondDir() &&
BUILDSTDERR:                                                         ^
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'void RDKit::StructureCheck::RemoveDubiousStereochemistry(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'void RDKit::StructureCheck::RemoveDubiousStereochemistry(RDKit::RWMol&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:334:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:334:45: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
BUILDSTDERR:             n_ligands > 2 && n_ligands <= 4) &&
BUILDSTDERR:             n_ligands > 2 && n_ligands <= 4) &&
BUILDSTDERR:                                              ^
BUILDSTDERR:                                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp: In function 'int RDKit::StructureCheck::Atom3Parity(RDKit::StructureCheck::stereo_bond_t*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:373:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Stereo.cpp:373:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (ligands[i].direction != RDKit::Bond::NONE)
BUILDSTDERR:      if (ligands[i].direction != RDKit::Bond::NONE)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
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Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdmolops.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rdmolops.cpp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'bool RDKit::StructureCheck::ChargeFix::setpKaValues()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:166:24: warning: variable 'AAp' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    const AugmentedAtom *AAp;
BUILDSTDERR:    const AugmentedAtom *AAp;
BUILDSTDERR:                         ^
BUILDSTDERR:                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp: In member function 'int RDKit::StructureCheck::ChargeFix::markMostAcidicAtoms(double&, double&)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:416:17: warning: unused variable 'atom' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/ReCharge.cpp:416:17: warning: unused variable 'atom' [-Wunused-variable]
BUILDSTDERR:      const Atom &atom = *Mol.getAtomWithIdx(i);
BUILDSTDERR:      const Atom &atom = *Mol.getAtomWithIdx(i);
BUILDSTDERR:                  ^
BUILDSTDERR:                  ^
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[ 91%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp: In member function 'bool RDKit::StructureCheck::StructCheckTautomer::applyTautomer(unsigned int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:20:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:20:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:28:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:28:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:      if (Options.Verbose)
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:44:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:44:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (Options.Verbose)
BUILDSTDERR:    if (Options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:15: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:                ^
BUILDSTDERR:                ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:61:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:      if (-1 == ti || -1 == tj) continue;
BUILDSTDERR:                            ^
BUILDSTDERR:                            ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Tautomer.cpp:36:18: warning: unused variable 'ntb' [-Wunused-variable]
BUILDSTDERR:    const unsigned ntb = toTautomer.getNumBonds();
BUILDSTDERR:    const unsigned ntb = toTautomer.getNumBonds();
BUILDSTDERR:                   ^
BUILDSTDERR:                   ^
Linking CXX shared library ../../../lib/libRDKitStructChecker.so
Linking CXX shared library ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2017.09.3 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2017.09.3 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
[ 91%] Built target StructChecker
[ 91%] Built target StructChecker
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
Scanning dependencies of target rdkit
Scanning dependencies of target rdkit
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 78
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 78
[ 92%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
[ 92%] Building CXX object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/adapter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/adapter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
BUILDSTDERR:  extern "C" double calcSparseStringDiceSml(const char *a, unsigned int sza,
BUILDSTDERR:                    ^
BUILDSTDERR:                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'szb' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:982:19: warning: unused parameter 'szb' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1095:17: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1095:17: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsGT(const char *a, unsigned int sza,
BUILDSTDERR:                  ^
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1133:17: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1133:17: warning: unused parameter 'sza' [-Wunused-parameter]
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
BUILDSTDERR:  extern "C" bool calcSparseStringAllValsLT(const char *a, unsigned int sza,
BUILDSTDERR:                  ^
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'data' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'data' [-Wunused-parameter]
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:  extern "C" CBfp makeAvalonBFP(CROMol data, bool isQuery,
BUILDSTDERR:                  ^
BUILDSTDERR:                  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'isQuery' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'isQuery' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'bitFlags' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1438:17: warning: unused parameter 'bitFlags' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1878:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1878:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1900:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1900:21: warning: unused variable 'fp' [-Wunused-variable]
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:      FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
BUILDSTDERR:                      ^
BUILDSTDERR:                      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1945:12: warning: unused variable 'nmols' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/adapter.cpp:1945:12: warning: unused variable 'nmols' [-Wunused-variable]
BUILDSTDERR:    int len, nmols = 0;
BUILDSTDERR:    int len, nmols = 0;
BUILDSTDERR:             ^
BUILDSTDERR:             ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_op.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_op.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/cache.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/cache.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/cache.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/cache.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/guc.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/guc.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/guc.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/guc.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
[ 92%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/low_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/low_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:3: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:3: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:    ^
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment makes pointer from integer without a cast [enabled by default]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment makes pointer from integer without a cast [enabled by default]
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:    fcinfo->flinfo->fn_extra = searchSfpCache(
BUILDSTDERR:                             ^
BUILDSTDERR:                             ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 79
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 79
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/mol_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/mol_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^
BUILDSTDERR:                   ^
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^
BUILDSTDERR:                   ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:33:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:33:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:                      ^
BUILDSTDERR:                      ^
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:316:39: note: in definition of macro 'SET_4_BYTES'
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:316:39: note: in definition of macro 'SET_4_BYTES'
BUILDSTDERR:  #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
BUILDSTDERR:  #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
BUILDSTDERR:                                        ^
BUILDSTDERR:                                        ^
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:295:36: note: in expansion of macro 'Int32GetDatum'
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:295:36: note: in expansion of macro 'Int32GetDatum'
BUILDSTDERR:  #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
BUILDSTDERR:  #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
BUILDSTDERR:                                     ^
BUILDSTDERR:                                     ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32'
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:      PG_RETURN_INT32((int32)lst);
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:34:0:
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:  #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
BUILDSTDERR:                              ^
BUILDSTDERR:                              ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM'
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:      CROMol mol = PG_GETARG_DATUM(1);
BUILDSTDERR:                   ^
BUILDSTDERR:                   ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  }
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  }
BUILDSTDERR:  ^
BUILDSTDERR:  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable]
BUILDSTDERR:    double d;
BUILDSTDERR:    double d;
BUILDSTDERR:           ^
BUILDSTDERR:           ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gist.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gist.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_consistent':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
BUILDSTDERR:  #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
BUILDSTDERR:                             ^
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:407:8: note: 'result' was declared here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:407:8: note: 'result' was declared here
BUILDSTDERR:    bool result;
BUILDSTDERR:    bool result;
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:299:28: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
BUILDSTDERR:  #define PG_RETURN_BOOL(x)  return BoolGetDatum(x)
BUILDSTDERR:                             ^
BUILDSTDERR:                             ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:477:8: note: 'result' was declared here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:477:8: note: 'result' was declared here
BUILDSTDERR:    bool result;
BUILDSTDERR:    bool result;
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:33:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_distance':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c: In function 'gbfp_distance':
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:306:51: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /usr/include/pgsql/server/fmgr.h:306:51: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  #define PG_RETURN_FLOAT8(x)  return Float8GetDatum(x)
BUILDSTDERR:  #define PG_RETURN_FLOAT8(x)  return Float8GetDatum(x)
BUILDSTDERR:                                                    ^
BUILDSTDERR:                                                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:562:35: note: 'similarity' was declared here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:562:35: note: 'similarity' was declared here
BUILDSTDERR:    double nDelta, nQuery, nCommon, similarity;
BUILDSTDERR:    double nDelta, nQuery, nCommon, similarity;
BUILDSTDERR:                                    ^
BUILDSTDERR:                                    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:617:3: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:617:3: warning: 'similarity' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:    return 1.0 - similarity;
BUILDSTDERR:    return 1.0 - similarity;
BUILDSTDERR:    ^
BUILDSTDERR:    ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:594:33: note: 'similarity' was declared here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gist.c:594:33: note: 'similarity' was declared here
BUILDSTDERR:    double nKey, nQuery, nCommon, similarity;
BUILDSTDERR:    double nKey, nQuery, nCommon, similarity;
BUILDSTDERR:                                  ^
BUILDSTDERR:                                  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
[ 93%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bfp_gin.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bfp_gin.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_triconsistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_triconsistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:201:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:201:1: warning: control reaches end of non-void function [-Wreturn-type]
BUILDSTDERR:  }
BUILDSTDERR:  }
BUILDSTDERR:  ^
BUILDSTDERR:  ^
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:32:0:
BUILDSTDERR: In file included from /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:32:0:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_consistent':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c: In function 'gin_bfp_consistent':
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:338:26: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR: /usr/include/pgsql/server/postgres.h:338:26: warning: 'result' may be used uninitialized in this function [-Wmaybe-uninitialized]
BUILDSTDERR:  #define BoolGetDatum(X) ((Datum) ((X) ? 1 : 0))
BUILDSTDERR:  #define BoolGetDatum(X) ((Datum) ((X) ? 1 : 0))
BUILDSTDERR:                           ^
BUILDSTDERR:                           ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:115:8: note: 'result' was declared here
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bfp_gin.c:115:8: note: 'result' was declared here
BUILDSTDERR:    bool result;
BUILDSTDERR:    bool result;
BUILDSTDERR:         ^
BUILDSTDERR:         ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 80
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 80
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/bitstring.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/bitstring.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
BUILDSTDERR:        ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable]
BUILDSTDERR:    int i;
BUILDSTDERR:    int i;
BUILDSTDERR:        ^
BUILDSTDERR:        ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rdkit_io.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_io.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rdkit_io.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rdkit_io.c
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/rxn_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/rxn_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment]
BUILDSTDERR:  //  /* keep compiler quiet - no extra ; */                                \
BUILDSTDERR:  //  /* keep compiler quiet - no extra ; */                                \
BUILDSTDERR:  ^
BUILDSTDERR:  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
[ 94%] Building C object Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/sfp_op.c.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sfp_op.c
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cc  -DBUILD_INCHI_SUPPORT -DRDKITVER=\"007300\" -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DUSE_BUILTIN_POPCOUNT -Drdkit_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/pgsql/server -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdkit.dir/sfp_op.c.o   -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sfp_op.c
Linking CXX shared library librdkit.so
Linking CXX shared library librdkit.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/sql
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/data
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/expected
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdkit.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64 -lpq ../../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 -lboost_serialization-mt -lcairo ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,librdkit.so -o librdkit.so CMakeFiles/rdkit.dir/adapter.cpp.o CMakeFiles/rdkit.dir/bfp_op.c.o CMakeFiles/rdkit.dir/cache.c.o CMakeFiles/rdkit.dir/guc.c.o CMakeFiles/rdkit.dir/low_gist.c.o CMakeFiles/rdkit.dir/mol_op.c.o CMakeFiles/rdkit.dir/rdkit_gist.c.o CMakeFiles/rdkit.dir/bfp_gist.c.o CMakeFiles/rdkit.dir/bfp_gin.c.o CMakeFiles/rdkit.dir/bitstring.c.o CMakeFiles/rdkit.dir/rdkit_io.c.o CMakeFiles/rdkit.dir/rxn_op.c.o CMakeFiles/rdkit.dir/sfp_op.c.o  -L/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64 -lpq ../../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 -lboost_serialization-mt -lcairo ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/lib64:/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  78 79 80
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  78 79 80
[ 94%] Built target rdkit
[ 94%] Built target rdkit
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
Scanning dependencies of target testInchi
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
[ 94%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/test.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/test.cpp
Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
Linking CXX shared module ../../../rdkit/Chem/rdmolops.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdmolops.so -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdmolops.so -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lcairo ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target DistGeomHelpers
Scanning dependencies of target DistGeomHelpers
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[ 94%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
Linking CXX executable testInchi
Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -rdynamic -linchi ../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../lib/libRDKitDepictor.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -rdynamic -linchi ../../lib/libRDKitRDInchiLib.so.1.2017.09.3 -linchi ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../lib/libRDKitDepictor.so.1.2017.09.3 ../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 94%] Built target testInchi
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
Scanning dependencies of target testEnumeration
Scanning dependencies of target testEnumeration
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[ 94%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 94%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Embedder.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp: In function 'int main(int, char**)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:372:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp:372:8: warning: variable 'doLong' set but not used [-Wunused-but-set-variable]
BUILDSTDERR:    bool doLong = false;
BUILDSTDERR:    bool doLong = false;
BUILDSTDERR:         ^
BUILDSTDERR:         ^
Linking CXX executable testEnumeration
Linking CXX executable testEnumeration
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o  -o testEnumeration -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target testEnumeration
[ 94%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
Scanning dependencies of target testReaction
Scanning dependencies of target testReaction
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 96
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 96
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction.cpp
Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target DistGeomHelpers
[ 95%] Built target DistGeomHelpers
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
Scanning dependencies of target testReactionFingerprints
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
[ 95%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
Linking CXX executable testReactionFingerprints
Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
Scanning dependencies of target rdChemReactions
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
[ 95%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
Linking CXX executable testReaction
Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 95%] Built target testReaction
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceFieldHelpers
Scanning dependencies of target testMMFFForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
Linking CXX executable testMMFFForceFieldHelpers
Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target testMMFFForceFieldHelpers
[ 95%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
[ 95%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdChemReactions.so -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdChemReactions.so -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_serialization-mt -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target rdChemReactions
[ 95%] Built target rdChemReactions
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testCrystalForceField
Scanning dependencies of target testCrystalForceField
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 87
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 87
[ 96%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
[ 96%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp
Linking CXX executable testCrystalForceField
Linking CXX executable testCrystalForceField
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o  -o testCrystalForceField -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  87
[ 96%] Built target testCrystalForceField
[ 96%] Built target testCrystalForceField
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
Scanning dependencies of target testDistGeomHelpers
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
Linking CXX executable testUFFForceFieldHelpers
Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -rdynamic ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 96%] Built target testUFFForceFieldHelpers
[ 96%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
Scanning dependencies of target rdDistGeom
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make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
[ 96%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++   -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++   -DBOOST_PYTHON_MAX_ARITY=32 -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
Linking CXX executable testDistGeomHelpers
Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target testDistGeomHelpers
[ 96%] Built target testDistGeomHelpers
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
Scanning dependencies of target testMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 96%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
[ 96%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDistGeom.so -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDistGeom.so -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target rdDistGeom
[ 96%] Built target rdDistGeom
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DRxnTest1
Scanning dependencies of target moldraw2DRxnTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/rxn_test1.cpp
Linking CXX executable moldraw2DRxnTest1
Linking CXX executable moldraw2DRxnTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o  -o moldraw2DRxnTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 96%] Built target moldraw2DRxnTest1
[ 96%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
Scanning dependencies of target moldraw2DTest1
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/test1.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/test1.cpp
Linking CXX executable testMolAlign
Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -rdynamic ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -rdynamic ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 96%] Built target testMolAlign
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
Scanning dependencies of target rdMolDraw2D
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make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
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[ 97%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
[ 97%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_CAIRO_BUILD -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3 -I/usr/include/cairo    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
Linking CXX executable moldraw2DTest1
Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -rdynamic ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lcairo ../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 -lboost_serialization-mt ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target moldraw2DTest1
[ 97%] Built target moldraw2DTest1
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
Scanning dependencies of target testMolHash
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 93
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[ 98%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
[ 98%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash.cpp
Linking CXX executable testMolHash
Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -rdynamic ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -rdynamic ../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  93
[ 98%] Built target testMolHash
[ 98%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
Scanning dependencies of target rdMolHash
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make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
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[ 98%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
[ 98%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDraw2D.so -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lcairo -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDraw2D.so -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitChemReactions.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lcairo -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFilterCatalog.so.1.2017.09.3 ../../../../lib/libRDKitCatalogs.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFingerprints.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
[ 98%] Built target rdMolDraw2D
[ 98%] Built target rdMolDraw2D
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
Scanning dependencies of target testStructChecker
Scanning dependencies of target testStructChecker
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
[ 98%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void doLoadOptionsFromFiles(RDKit::StructureCheck::StructCheckerOptions&, const string&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void doLoadOptionsFromFiles(RDKit::StructureCheck::StructCheckerOptions&, const string&, bool)':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:98:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:98:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:101:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:101:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:106:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:106:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:111:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:111:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:122:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:122:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:127:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:127:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:    if (options.Verbose)
BUILDSTDERR:       ^
BUILDSTDERR:       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testLoadOptionsFromFiles()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:139:8: warning: unused variable 'ok' [-Wunused-variable]
BUILDSTDERR:    bool ok;
BUILDSTDERR:    bool ok;
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test1()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test1()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:168:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:168:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test2()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void test2()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:195:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:195:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testStereo()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:324:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testOptionsDefault()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:400:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtomWithDefaultGoodAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:424:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckAtom()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:448:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckMatch()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testCheckMatch()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:539:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:539:8: warning: suggest explicit braces to avoid ambiguous 'else' [-Wparentheses]
BUILDSTDERR:      if (!CheckAtoms(*mol, options.GoodAtoms, options.Verbose))
BUILDSTDERR:      if (!CheckAtoms(*mol, options.GoodAtoms, options.Verbose))
BUILDSTDERR:         ^
BUILDSTDERR:         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificExamples()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:603:56: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:      for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:      for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                         ^
BUILDSTDERR:                                                         ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testSpecificOrder()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:676:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformTau()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:705:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testTransformAtoms()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:749:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testAugmentedAtomTranslationsToAtomListQuery()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: In function 'void testAugmentedAtomTranslationsToAtomListQuery()':
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:787:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:787:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:    for (int i = 0; i < sizeof(smols) / sizeof(smols[0]); i++) {
BUILDSTDERR:                                                       ^
BUILDSTDERR:                                                       ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp: At global scope:
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argc' [-Wunused-parameter]
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:  int main(int argc, const char* argv[]) {
BUILDSTDERR:      ^
BUILDSTDERR:      ^
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argv' [-Wunused-parameter]
BUILDSTDERR: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker.cpp:844:5: warning: unused parameter 'argv' [-Wunused-parameter]
Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolHash.so -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolHash.so -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 98%] Built target rdMolHash
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
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[ 98%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/structchecker.cpp
Linking CXX executable testStructChecker
Linking CXX executable testStructChecker
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -rdynamic ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o  -o testStructChecker -rdynamic ../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
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[ 98%] Built target testStructChecker
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp
Linking CXX executable testRGroupDecomp
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -rdynamic ../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o  -o testRGroupDecomp -rdynamic ../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 98%] Built target testRGroupDecomp
[ 98%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
Scanning dependencies of target rdRGroupDecomposition
Scanning dependencies of target rdRGroupDecomposition
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[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
[ 99%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdStructChecker.so -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdStructChecker.so -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitDescriptors.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitPartialCharges.so.1.2017.09.3 ../../../../lib/libRDKitSubgraphs.so.1.2017.09.3 ../../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 99%] Built target rdStructChecker
[ 99%] Built target rdStructChecker
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
Scanning dependencies of target testMMFFForceField
Scanning dependencies of target testMMFFForceField
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[100%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
[100%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField.cpp
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -DRDK_BUILD_DESCRIPTORS3D -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_STRICT_ROTOR_DEFINITION -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -I/usr/include/inchi -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code -I/usr/include/eigen3    -DRDK_THREADSAFE_SSS -DBOOST_ALL_NO_LIB -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdRGroupDecomposition.so -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdRGroupDecomposition.so -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2017.09.3 ../../../../lib/libRDKitFMCS.so.1.2017.09.3 ../../../../lib/libRDKitChemTransforms.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitRDBoost.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -lpython2.7 -lboost_python-mt -lboost_thread-mt -lboost_system-mt -lboost_serialization-mt ../../../../lib/libRDKitDepictor.so.1.2017.09.3 ../../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lpthread -lboost_thread-mt -lboost_system-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[100%] Built target rdRGroupDecomposition
[100%] Built target rdRGroupDecomposition
Linking CXX executable testMMFFForceField
Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -Wl,--as-needed  -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -rdynamic ../../../lib/libRDKitDistGeomHelpers.so.1.2017.09.3 ../../../lib/libRDKitDistGeometry.so.1.2017.09.3 ../../../lib/libRDKitForceFieldHelpers.so.1.2017.09.3 ../../../lib/libRDKitForceField.so.1.2017.09.3 ../../../lib/libRDKitFileParsers.so.1.2017.09.3 ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitSmilesParse.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitMolAlign.so.1.2017.09.3 ../../../lib/libRDKitOptimizer.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitAlignment.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread ../../../lib/libRDKitMolTransforms.so.1.2017.09.3 ../../../lib/libRDKitEigenSolvers.so.1.2017.09.3 ../../../lib/libRDKitSubstructMatch.so.1.2017.09.3 ../../../lib/libRDKitGraphMol.so.1.2017.09.3 ../../../lib/libRDKitRDGeometryLib.so.1.2017.09.3 ../../../lib/libRDKitDataStructs.so.1.2017.09.3 ../../../lib/libRDKitRDGeneral.so.1.2017.09.3 -lboost_thread-mt -lboost_system-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
[100%] Built target testMMFFForceField
[100%] Built target testMMFFForceField
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ chrpath -d librdkit.so
+ chrpath -d librdkit.so
+ popd
+ popd
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ popd
~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3
+ exit 0
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JqNIdQ
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.JqNIdQ
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64 '!=' / ']'
+ '[' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ mkdir /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ pushd python2
+ pushd python2
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 -B/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 -B/builddir/build/BUILD/rdkit-Release_2017_09_3/python2 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles/progress.marks
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  44 45
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  44 45
[  2%] Built target RDGeneral
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  6 7
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  6 7
[  4%] Built target DataStructs
[  4%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  46
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  46
[  5%] Built target RDGeometryLib
[  5%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  32 33 34 35 36 37
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  32 33 34 35 36 37
[ 11%] Built target GraphMol
[ 11%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 11%] Built target SubstructMatch
[ 11%] Built target SubstructMatch
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  50 51 52
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  50 51 52
[ 14%] Built target SmilesParse
[ 14%] Built target SmilesParse
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  8
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  8
[ 15%] Built target Depictor
[ 15%] Built target Depictor
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target RDInchiLib
[ 15%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/inchi.py
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/inchi.py
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target inchi_support
[ 15%] Built target inchi_support
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target EigenSolvers
[ 15%] Built target EigenSolvers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 15%] Built target MolTransforms
[ 15%] Built target MolTransforms
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  17 18 19 20
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  17 18 19 20
[ 19%] Built target FileParsers
[ 19%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 19%] Built target Subgraphs
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make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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[ 20%] Built target PartialCharges
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make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  9 10 11 12 13
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make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/testInchi.dir/build'.
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 25%] Built target testInchi
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make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make[2]: Nothing to be done for `Code/RDBoost/CMakeFiles/RDBoost.dir/build'.
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make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 25%] Built target rdinchi
[ 25%] Built target rdinchi
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/testDict.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  88
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  88
[ 26%] Built target testDict
[ 26%] Built target testDict
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/testRDValue.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 26%] Built target testRDValue
[ 26%] Built target testRDValue
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  64
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[ 27%] Built target rdBase
[ 27%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 27%] Built target testDataStructs
[ 27%] Built target testDataStructs
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testFPB.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 27%] Built target testFPB
[ 27%] Built target testFPB
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  94
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  94
[ 28%] Built target testMultiFPB
[ 28%] Built target testMultiFPB
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Nothing to be done for `Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  57 58
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  57 58
[ 30%] Built target cDataStructs
[ 30%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 30%] Built target testGrid
[ 30%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  99
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  99
[ 31%] Built target testTransforms
[ 31%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Nothing to be done for `Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target rdGeometry
[ 31%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testMatrices
[ 31%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target Alignment
[ 31%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testAlignment
[ 31%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target rdAlignment
[ 31%] Built target rdAlignment
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target Optimizer
[ 31%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 31%] Built target testOptimizer
[ 31%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Nothing to be done for `Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  24 25 26 27 28
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  24 25 26 27 28
[ 36%] Built target ForceField
[ 36%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  29
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  29
[ 37%] Built target ForceFieldHelpers
[ 37%] Built target ForceFieldHelpers
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Nothing to be done for `Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 37%] Built target testUFFForceField
[ 37%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 37%] Built target MolAlign
[ 37%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  14
[ 38%] Built target DistGeometry
[ 38%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 38%] Built target DistGeomHelpers
[ 38%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Nothing to be done for `Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  91
[ 39%] Built target testMMFFForceField
[ 39%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Nothing to be done for `Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target rdForceField
[ 39%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target testDistGeom
[ 39%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Nothing to be done for `Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target DistGeom
[ 39%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Nothing to be done for `Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target Catalogs
[ 39%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 39%] Built target graphmolIterTest
[ 39%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  60
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  60
[ 40%] Built target graphmolMemTest1
[ 40%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolMolOpsTest
[ 40%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolTest1
[ 40%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 40%] Built target graphmolcpTest
[ 40%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  61
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  61
[ 41%] Built target graphmolqueryTest
[ 41%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestCanon
[ 41%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestChirality
[ 41%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 41%] Built target graphmoltestPickler
[ 41%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  62
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  62
[ 42%] Built target graphmoltestPicklerGlobalSetting
[ 42%] Built target graphmoltestPicklerGlobalSetting
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 42%] Built target hanoiTest
[ 42%] Built target hanoiTest
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/molBundleTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  63
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  63
[ 43%] Built target molBundleTest
[ 43%] Built target molBundleTest
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 43%] Built target resMolSupplierTest
[ 43%] Built target resMolSupplierTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  5
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  5
[ 44%] Built target ChemTransforms
[ 44%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 44%] Built target testDepictor
[ 44%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  65
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  65
[ 45%] Built target rdDepictor
[ 45%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  59
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  59
[ 46%] Built target cxsmilesTest
[ 46%] Built target cxsmilesTest
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  85
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  85
[ 47%] Built target smaTest1
[ 47%] Built target smaTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target smiTest1
[ 47%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target fileParsersTest1
[ 47%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMol2ToMol
[ 47%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMolSupplier
[ 47%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 47%] Built target testMolWriter
[ 47%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  97
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  97
[ 48%] Built target testSequence
[ 48%] Built target testSequence
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 48%] Built target testTplParser
[ 48%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 48%] Built target testSubstructMatch
[ 48%] Built target testSubstructMatch
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  21
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  21
[ 49%] Built target FilterCatalog
[ 49%] Built target FilterCatalog
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  22 23
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  22 23
[ 51%] Built target Fingerprints
[ 51%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  1 2 3 4
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  1 2 3 4
[ 55%] Built target ChemReactions
[ 55%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 55%] Built target testEnumeration
[ 55%] Built target testEnumeration
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  96
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  96
[ 56%] Built target testReaction
[ 56%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testReactionFingerprints
[ 56%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target rdChemReactions
[ 56%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 56%] Built target testChemTransforms
[ 56%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  98
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  98
[ 57%] Built target testSubgraphs1
[ 57%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 57%] Built target testSubgraphs2
[ 57%] Built target testSubgraphs2
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 57%] Built target filterCatalogTest
[ 57%] Built target filterCatalogTest
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  76
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  76
[ 58%] Built target rdfiltercatalog
[ 58%] Built target rdfiltercatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  30 31
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  30 31
[ 60%] Built target FragCatalog
[ 60%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  90
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  90
[ 61%] Built target testFragCatalog
[ 61%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  77
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  77
[ 62%] Built target rdfragcatalog
[ 62%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/test3D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 62%] Built target test3D
[ 62%] Built target test3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 62%] Built target testAUTOCORR2D
[ 62%] Built target testAUTOCORR2D
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR3D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  86
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  86
[ 63%] Built target testAUTOCORR3D
[ 63%] Built target testAUTOCORR3D
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testDescriptors
[ 63%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testGETAWAY.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testGETAWAY
[ 63%] Built target testGETAWAY
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testMORSE.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMORSE
[ 63%] Built target testMORSE
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testPBF.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testPBF
[ 63%] Built target testPBF
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testRDF.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testRDF
[ 63%] Built target testRDF
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build
make -f Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testWHIM.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testWHIM
[ 63%] Built target testWHIM
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdMolDescriptors
[ 63%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testFingerprints
[ 63%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testPartialCharges
[ 63%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdPartialCharges
[ 63%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMolTransforms
[ 63%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target rdMolTransforms
[ 63%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testMMFFForceFieldHelpers
[ 63%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 63%] Built target testUFFForceFieldHelpers
[ 63%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  87
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  87
[ 64%] Built target testCrystalForceField
[ 64%] Built target testCrystalForceField
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  66
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  66
[ 65%] Built target rdForceFieldHelpers
[ 65%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target testDistGeomHelpers
[ 65%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target rdDistGeom
[ 65%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target testMolAlign
[ 65%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 65%] Built target rdMolAlign
[ 65%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  40
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  40
[ 66%] Built target MolChemicalFeatures
[ 66%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 66%] Built target testFeatures
[ 66%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  69
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  69
[ 67%] Built target rdMolChemicalFeatures
[ 67%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  49
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  49
[ 68%] Built target ShapeHelpers
[ 68%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 68%] Built target testShapeHelpers
[ 68%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 68%] Built target rdShapeHelpers
[ 68%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  39
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  39
[ 69%] Built target MolCatalog
[ 69%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 69%] Built target testMolCatalog
[ 69%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 69%] Built target rdMolCatalog
[ 69%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  41
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  41
[ 70%] Built target MolDraw2D
[ 70%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Built target moldraw2DRxnTest1
[ 70%] Built target moldraw2DRxnTest1
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 70%] Built target moldraw2DTest1
[ 70%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  70
[ 71%] Built target rdMolDraw2D
[ 71%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  15
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  15
[ 72%] Built target FMCS
[ 72%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  89
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  89
[ 73%] Built target testFMCS
[ 73%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 73%] Built target rdFMCS
[ 73%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  16
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  16
[ 74%] Built target FMCStest
[ 74%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  42
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  42
[ 75%] Built target MolHash
[ 75%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  93
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  93
[ 76%] Built target testMolHash
[ 76%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target rdMolHash
[ 76%] Built target rdMolHash
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target MMPA
[ 76%] Built target MMPA
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target testMMPA
[ 76%] Built target testMMPA
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 76%] Built target rdMMPA
[ 76%] Built target rdMMPA
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  53 54 55
[ 79%] Built target StructChecker
[ 79%] Built target StructChecker
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 79%] Built target testStructChecker
[ 79%] Built target testStructChecker
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 79%] Built target rdStructChecker
[ 79%] Built target rdStructChecker
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  47
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  47
[ 80%] Built target ReducedGraphs
[ 80%] Built target ReducedGraphs
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target testReducedGraphs
[ 80%] Built target testReducedGraphs
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target rdReducedGraphs
[ 80%] Built target rdReducedGraphs
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 80%] Built target Trajectory
[ 80%] Built target Trajectory
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  100
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  100
[ 81%] Built target trajectoryTest
[ 81%] Built target trajectoryTest
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  56
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  56
[ 82%] Built target SubstructLibrary
[ 82%] Built target SubstructLibrary
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 82%] Built target substructLibraryTest
[ 82%] Built target substructLibraryTest
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  73
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  73
[ 83%] Built target rdSubstructLibrary
[ 83%] Built target rdSubstructLibrary
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target RGroupDecomposition
[ 83%] Built target RGroupDecomposition
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 83%] Built target testRGroupDecomp
[ 83%] Built target testRGroupDecomp
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  71
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  71
[ 84%] Built target rdRGroupDecomposition
[ 84%] Built target rdRGroupDecomposition
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  48
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  48
[ 85%] Built target SLNParse
[ 85%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Built target testSLNParse
[ 85%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 85%] Built target rdSLNParse
[ 85%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  74 75
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  74 75
[ 87%] Built target rdchem
[ 87%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  81 82 83
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  81 82 83
[ 90%] Built target rdmolfiles
[ 90%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 90%] Built target rdmolops
[ 90%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  84
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  84
[ 91%] Built target rdqueries
[ 91%] Built target rdqueries
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 91%] Built target rdtrajectory
[ 91%] Built target rdtrajectory
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Nothing to be done for `Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  95
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  95
[ 92%] Built target testQuery
[ 92%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  92
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  92
[ 93%] Built target testMatCalc
[ 93%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  68
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  68
[ 94%] Built target rdMetricMatrixCalc
[ 94%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target hc
[ 94%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target SimDivPickers
[ 94%] Built target SimDivPickers
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Nothing to be done for `Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 94%] Built target testSimDivPickers
[ 94%] Built target testSimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Nothing to be done for `Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  72
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  72
[ 95%] Built target rdSimDivPickers
[ 95%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Nothing to be done for `Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 95%] Built target Clustering
[ 95%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Nothing to be done for `Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  38
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  38
[ 96%] Built target InfoTheory
[ 96%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Nothing to be done for `Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  67
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  67
[ 97%] Built target rdInfoTheory
[ 97%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Nothing to be done for `Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target cQuantize
[ 97%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target ChemicalFeatures
[ 97%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target testChemicalFeatures
[ 97%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Nothing to be done for `Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 
[ 97%] Built target rdChemicalFeatures
[ 97%] Built target rdChemicalFeatures
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
cd /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2 /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make -f Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build.make Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Nothing to be done for `Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Nothing to be done for `Code/PgSQL/rdkit/CMakeFiles/rdkit.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  78 79 80
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles  78 79 80
[100%] Built target rdkit
[100%] Built target rdkit
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Nothing to be done for `preinstall'.
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2017_09_3/python2'
Install the project...
Install the project...
/usr/bin/cmake -P cmake_install.cmake
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDConfig.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDLogger.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDLogger.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDRandom.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDRandom.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/TestRunner.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/TestRunner.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/_py2_pickle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/_py2_pickle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/six.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/six.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/cactvs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/cactvs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/comhack.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/comhack.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/fileutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/fileutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/listutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/listutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/spiral.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/spiral.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test3.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test3.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test2.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test2.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test1.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test1.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/retest.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/retest.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/12h.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/12h.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/epydoc.config
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/epydoc.config
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Filter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Node.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SDSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/SimilarityPickers.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/Ranking.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hanoiSort.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so
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-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDBoost.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/Wrap.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/Wrap.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/PySequenceHolder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/list_indexing_suite.hpp
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/python.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/python.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/boost_numpy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/RDBoost/python_streambuf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDataStructs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDataStructs.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/base64.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/BitVectUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DatastructsException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DiscreteDistMat.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/DiscreteValueVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/ExplicitBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/SparseBitVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/SparseIntVect.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/FPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataStructs/MultiFPBReader.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Grid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/GridUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/point.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Transform.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/UniformGrid3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Geometry/Utils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Matrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/SquareMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/SymmMatrix.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Vector.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitAlignment.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Alignment/AlignPoints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitEigenSolvers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitOptimizer.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceField.so.1.2017.09.3"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/Contrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/ForceField.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/Inversion.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/UFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/BondStretch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/StretchBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/OopBend.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Nonbonded.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Contribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeometry.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/BoundsMatrix.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitCatalogs.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitGraphMol.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Resonance.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolBundle.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDepictor.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFileParsers.so.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/Property.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PBF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PBF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PMI.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/PMI.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RDF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/RDF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MORSE.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/MORSE.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/GETAWAY.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/GETAWAY.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/WHIM.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Descriptors/WHIM.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1.2017.09.3
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MMPA/MMPA.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMMPA.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Utilites.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Pattern.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Stereo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdStructChecker.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3"
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-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSubstructLibrary.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdtrajectory.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so"
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so"
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
+ install -D librdkit.so /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit.control /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit.control
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit--3.5.sql
+ install -D rdkit--3.5.sql /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/pgsql/extension/rdkit--3.5.sql
+ popd
+ popd
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ popd
~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3
+ rm -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64//usr/share/RDKit
+ rm -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64//usr/share/RDKit
+ FMCS=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ FMCS=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ sed '1{\@^#!/usr/bin/python2@d}' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ sed '1{\@^#!/usr/bin/python2@d}' /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ touch -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ touch -r /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new
+ mv /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ mv /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.new /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs.py
+ rm /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ rm /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/fmcs/fmcs
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/rdkit-Release_2017_09_3
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/rdkit-Release_2017_09_3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitInfoTheory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKithc.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSimDivPickers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSLNParse.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitRGroupDecomposition.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubstructLibrary.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitTrajectory.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitReducedGraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitStructChecker.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMMPA.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolHash.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFMCS.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolDraw2D.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolAlign.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFingerprints.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitDescriptors.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3
extracting debug info from /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3
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/usr/lib/rpm/sepdebugcrcfix: Updated 86 CRC32s, 0 CRC32s did match.
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symlinked /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitShapeHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolAlign.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeomHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceFieldHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitMolTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitPartialCharges.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFingerprints.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDescriptors.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFragCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFilterCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubgraphs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitChemReactions.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSubstructMatch.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitFileParsers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitSmilesParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDepictor.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitGraphMol.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitCatalogs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDistGeometry.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitForceField.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitOptimizer.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitEigenSolvers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitAlignment.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeometryLib.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitDataStructs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDBoost.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDGeneral.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.2017.09.3.debug to /usr/lib/debug/usr/lib64/libRDKitRDInchiLib.so.1.debug
BUILDSTDERR: 13294 blocks
BUILDSTDERR: 13294 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iBAzHo
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.iBAzHo
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3/python2 ~/build/BUILD/rdkit-Release_2017_09_3
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ pushd python2
+ pushd python2
+ export RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ export RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ RDBASE=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/lib
+ export PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ export PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2017_09_3/python2
+ ARGS='-V -E '\''pythonTestSping|testPgSQL'\'''
+ ARGS='-V -E '\''pythonTestSping|testPgSQL'\'''
+ make test
+ make test
Running tests...
Running tests...
/usr/bin/ctest --force-new-ctest-process -V -E 'pythonTestSping|testPgSQL'
/usr/bin/ctest --force-new-ctest-process -V -E 'pythonTestSping|testPgSQL'
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/DartConfiguration.tcl
Test project /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
Test project /builddir/build/BUILD/rdkit-Release_2017_09_3/python2
Constructing a list of tests
Constructing a list of tests
Done constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph...
Checking test dependency graph end
Checking test dependency graph end
test 1
test 1
        Start   1: testInchi
        Start   1: testInchi
1: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/testInchi
1: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/External/INCHI-API/testInchi
1: Test timeout computed to be: 9.99988e+06
1: Test timeout computed to be: 9.99988e+06
1: [10:53:27] -------------------------------------
1: [10:53:27] -------------------------------------
1: [10:53:27] testing github issue 3: bad inchis when mol has no stereoinfo
1: [10:53:27] testing github issue 3: bad inchis when mol has no stereoinfo
1: [10:53:27] done
1: [10:53:27] done
1: [10:53:27] testing a consequence of the fix for github issue 8: bad mols from some inchis
1: [10:53:27] testing a consequence of the fix for github issue 8: bad mols from some inchis
1: [10:53:27] -------------------------------------
1: [10:53:27] -------------------------------------
1: [10:53:27] done
1: [10:53:27] done
1: [10:53:27] testing github issue 40: bad MWs from inchis
1: [10:53:27] testing github issue 40: bad MWs from inchis
1: [10:53:27] -------------------------------------
1: [10:53:27] -------------------------------------
1: [10:53:28] done
1: [10:53:28] done
1: [10:53:28] testing github issue 67: seg fault from inchi
1: [10:53:28] testing github issue 67: seg fault from inchi
1: [10:53:28] -------------------------------------
1: [10:53:28] -------------------------------------
1: [10:53:28] Extended double-bond stereochemistry (e.g. C=C=C=C) ignored
1: [10:53:28] Extended double-bond stereochemistry (e.g. C=C=C=C) ignored
1: [10:53:28] done
1: [10:53:28] done
1: [10:53:28] testing github issue 68: hang while reading InChI
1: [10:53:28] testing github issue 68: hang while reading InChI
1: [10:53:28]   parse 1:
1: [10:53:28]   parse 1:
1: [10:53:28] -------------------------------------
1: [10:53:28] -------------------------------------
1: [10:53:28]   done
1: [10:53:28]   done
1: [10:53:28]   parse 2:
1: [10:53:28]   parse 2:
1: [10:53:28]   done
1: [10:53:28]   done
1: [10:53:28] done
1: [10:53:28] done
1: [10:53:28] testing github issue 296: problems with chiral S and inchi
1: [10:53:28] testing github issue 296: problems with chiral S and inchi
1: [10:53:28] -------------------------------------
1: [10:53:28] -------------------------------------
1: [10:53:28] done
1: [10:53:28] done
1: [10:53:28] -------------------------------------
1: [10:53:28] -------------------------------------
1: [10:53:28]     Test multithreading
1: [10:53:28]     Test multithreading
1: reading molecules
1: reading molecules
1: generating reference data
1: generating reference data
1: processing
1: processing
1:  launch :0
1:  launch :0
1:  launch :1
1:  launch :1
1:  launch :2
1:  launch :2
1:  launch :3
1:  launch :3
1: [10:53:32]   done
1: [10:53:32]   done
1: [10:53:32] testing github issue 437: problems with InChI and ring stereochemistry
1: [10:53:32] testing github issue 437: problems with InChI and ring stereochemistry
1: [10:53:32] -------------------------------------
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] done
1: [10:53:32] testing github issue 562: InChI radicals not properly converted
1: [10:53:32] testing github issue 562: InChI radicals not properly converted
1: [10:53:32] -------------------------------------
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] done
1: [10:53:32] testing github issue 614: segfault from MolToInchi when bad bond stereochem info is present
1: [10:53:32] testing github issue 614: segfault from MolToInchi when bad bond stereochem info is present
1: [10:53:32] -------------------------------------
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] done
1: [10:53:32] testing github issue 1572: Incorrect conversion from InChI
1: [10:53:32] testing github issue 1572: Incorrect conversion from InChI
1: [10:53:32] -------------------------------------
1: [10:53:32] -------------------------------------
1: [10:53:32] done
1: [10:53:32] done
  1/130 Test   #1: testInchi ..........................   Passed    5.12 sec
  1/130 Test   #1: testInchi ..........................   Passed    5.12 sec
test 2
test 2
        Start   2: testDict
        Start   2: testDict
2: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testDict
2: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testDict
2: Test timeout computed to be: 9.99988e+06
2: Test timeout computed to be: 9.99988e+06
2: [10:53:33] Testing Github940: property dictionaries leaking memory
2: [10:53:33] Testing Github940: property dictionaries leaking memory
2: [10:53:33] 	done
2: [10:53:33] 	done
2: Testing RDValue
2: Testing RDValue
2: Testing RDAny
2: Testing RDAny
2: dict set int vect
2: dict set int vect
2: dict get int vect
2: dict get int vect
2: static boost any:0.26 s
2: static boost any:0.26 s
2: dynamic boost any:0.57 s
2: dynamic boost any:0.57 s
2: static RDAny:0.04 s
2: static RDAny:0.04 s
2: dynamic RDAny:0.28 s
2: dynamic RDAny:0.28 s
2: static RDValue:0 s
2: static RDValue:0 s
2: dynamic RDValue:0 s
2: dynamic RDValue:0 s
2: deleted!
2: deleted!
2: [10:53:34] dict test
2: [10:53:34] dict test
2: [10:53:34] -------------------------------------
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing String Pickle Roundtrips.
2: [10:53:34] Testing String Pickle Roundtrips.
2: [10:53:34] 	done
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing conversion of vect to string.
2: [10:53:34] Testing conversion of vect to string.
2: [1.2,0,]
2: [1.2,0,]
2: [10001,0,]
2: [10001,0,]
2: [10:53:34] 	done
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing returning const references.
2: [10:53:34] Testing returning const references.
2: [10:53:34] any cast
2: [10:53:34] any cast
2: [10:53:34] done: 0 300000
2: [10:53:34] done: 0 300000
2: [10:53:34] copy
2: [10:53:34] copy
2: [10:53:34] done: 0 300000
2: [10:53:34] done: 0 300000
2: [10:53:34] ref
2: [10:53:34] ref
2: [10:53:34] done: 0 300000
2: [10:53:34] done: 0 300000
2: [10:53:34] dict
2: [10:53:34] dict
2: [10:53:34] done: 0.01 300000
2: [10:53:34] done: 0.01 300000
2: [10:53:34] ref with hasVal
2: [10:53:34] ref with hasVal
2: [10:53:34] done: 0 300000
2: [10:53:34] done: 0 300000
2: [10:53:34] 	done
2: [10:53:34] 	done
2: [10:53:34] -------------------------------------
2: [10:53:34] -------------------------------------
2: [10:53:34] Testing dict update.
2: [10:53:34] Testing dict update.
2: [10:53:34] 	done
2: [10:53:34] 	done
  2/130 Test   #2: testDict ...........................   Passed    1.43 sec
  2/130 Test   #2: testDict ...........................   Passed    1.43 sec
test 3
test 3
        Start   3: testRDValue
        Start   3: testRDValue
3: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testRDValue
3: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/RDGeneral/testRDValue
3: Test timeout computed to be: 9.99988e+06
3: Test timeout computed to be: 9.99988e+06
3: -- running tests -- 
3: -- running tests -- 
3: min: -2147483648 -2147483648
3: min: -2147483648 -2147483648
3: min: 0 0
3: min: 0 0
3: min: 2.22507e-308 2.22507e-308
3: min: 2.22507e-308 2.22507e-308
3: min: 1.17549e-38 1.17549e-38
3: min: 1.17549e-38 1.17549e-38
3: min: 0 0
3: min: 0 0
3: == int
3: == int
3: == double
3: == double
3: == float
3: == float
3: == unsigned int
3: == unsigned int
3: == bool
3: == bool
3: == std::string
3: == std::string
  3/130 Test   #3: testRDValue ........................   Passed    0.07 sec
  3/130 Test   #3: testRDValue ........................   Passed    0.07 sec
test 4
test 4
        Start   4: testDataStructs
        Start   4: testDataStructs
4: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testDataStructs
4: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testDataStructs
4: Test timeout computed to be: 9.99988e+06
4: Test timeout computed to be: 9.99988e+06
4: [10:53:34] pass
4: [10:53:34] pass
4: [10:53:34] v3 4
4: [10:53:34] v3 4
4: [10:53:34] v4 5
4: [10:53:34] v4 5
4: [10:53:34]  SPARSE -----------------------------------
4: [10:53:34]  SPARSE -----------------------------------
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 10: 1
4: [10:53:34] Set 10: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Num: 20
4: [10:53:34] Num: 20
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOff: 17
4: [10:53:34] NumOff: 17
4: 10, 11, 14, 
4: 10, 11, 14, 
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 0
4: [10:53:34] t2[14]: 0
4: t1: 10, 11, 14, 
4: t1: 10, 11, 14, 
4: t2: 10, 11, 15, 17, 
4: t2: 10, 11, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1&t2: 10, 11, 
4: t1&t2: 10, 11, 
4: t1^t2: 14, 15, 17, 
4: t1^t2: 14, 15, 17, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4:  except 
4:  except 
4: [10:53:34]  Explicit ----------------------------------
4: [10:53:34]  Explicit ----------------------------------
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 10: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 11: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 14: 0
4: [10:53:34] Set 10: 1
4: [10:53:34] Set 10: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Get 14: 1
4: [10:53:34] Num: 20
4: [10:53:34] Num: 20
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOn: 3
4: [10:53:34] NumOff: 17
4: [10:53:34] NumOff: 17
4: 10, 11, 14, 
4: 10, 11, 14, 
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[14]: 1
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[19]: 0
4: [10:53:34] t2[14]: 0
4: [10:53:34] t2[14]: 0
4: t1: 10, 11, 14, 
4: t1: 10, 11, 14, 
4: t2: 10, 11, 15, 17, 
4: t2: 10, 11, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1|t2: 10, 11, 14, 15, 17, 
4: t1&t2: 10, 11, 
4: t1&t2: 10, 11, 
4: t1^t2: 14, 15, 17, 
4: t1^t2: 14, 15, 17, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
4:  except 
4:  except 
4: [10:53:34]  Done
4: [10:53:34]  Done
4: [10:53:34]  Test DiscreteValue Vectors 1 ----------------------------
4: [10:53:34]  Test DiscreteValue Vectors 1 ----------------------------
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34] Expected failure: Value out of range
4: [10:53:34]  Test DiscreteValue Vectors 2 ------------------------------
4: [10:53:34]  Test DiscreteValue Vectors 2 ------------------------------
4: [10:53:34]  Test DiscreteValue Vectors 3 ---------------------------
4: [10:53:34]  Test DiscreteValue Vectors 3 ---------------------------
4: [10:53:34]  Test DiscreteValue Operations -----------------------------
4: [10:53:34]  Test DiscreteValue Operations -----------------------------
4: [10:53:34]  Test DiscreteValue Operations 2 -------------------------- 
4: [10:53:34]  Test DiscreteValue Operations 2 -------------------------- 
4: [10:53:34]  Test SparseIntVect  ------------------------------------
4: [10:53:34]  Test SparseIntVect  ------------------------------------
4: [10:53:34]  Test SparseIntVect Serialization  --------------------------
4: [10:53:34]  Test SparseIntVect Serialization  --------------------------
4: [10:53:34]  Test BitVect Serialization  -------------------------------
4: [10:53:34]  Test BitVect Serialization  -------------------------------
4: [10:53:34]  Test BitVect to FPS  -------------------------------
4: [10:53:34]  Test BitVect to FPS  -------------------------------
4: [10:53:34]  Test BitVect to binary string  -------------------------------
4: [10:53:34]  Test BitVect to binary string  -------------------------------
4: [10:53:34]  Test Similarity Measures BitVect -------------------------------
4: [10:53:34]  Test Similarity Measures BitVect -------------------------------
4: [10:53:34]  Test Similarity Measures SparseBitVect -------------------------------
4: [10:53:34]  Test Similarity Measures SparseBitVect -------------------------------
4: [10:53:34]  Test BitVect with all ones -------------------------------
4: [10:53:34]  Test BitVect with all ones -------------------------------
4: [10:53:34]  Test Explicit BitVects: Concatenation Operation  -------------------------------
4: [10:53:34]  Test Explicit BitVects: Concatenation Operation  -------------------------------
4: [10:53:34]  Test bitmap operations  -------------------------------
4: [10:53:34]  Test bitmap operations  -------------------------------
  4/130 Test   #4: testDataStructs ....................   Passed    0.13 sec
  4/130 Test   #4: testDataStructs ....................   Passed    0.13 sec
test 5
test 5
        Start   5: testFPB
        Start   5: testFPB
5: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testFPB
5: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testFPB
5: Test timeout computed to be: 9.99988e+06
5: Test timeout computed to be: 9.99988e+06
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader basics 
5:  Testing FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader basics 
5:  Testing Lazy FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader tanimoto 
5:  Testing FPBReader tanimoto 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader tanimoto neighbors
5:  Testing FPBReader tanimoto neighbors
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader contains search
5:  Testing FPBReader contains search
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader basics 
5:  Testing Lazy FPBReader basics 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader tanimoto 
5:  Testing Lazy FPBReader tanimoto 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing Lazy FPBReader tanimoto neighbors
5:  Testing Lazy FPBReader tanimoto neighbors
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing some internal bitset details
5:  Testing some internal bitset details
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader Tversky 
5:  Testing FPBReader Tversky 
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing FPBReader Tversky neighbors
5:  Testing FPBReader Tversky neighbors
5: [10:53:34] Finished
5: [10:53:34] Finished
5: [10:53:34] -----------------------
5: [10:53:34] -----------------------
5:  Testing github issue 1118: deleting non-initialized FPBReader causes seg fault
5:  Testing github issue 1118: deleting non-initialized FPBReader causes seg fault
5: [10:53:34] Finished
5: [10:53:34] Finished
  5/130 Test   #5: testFPB ............................   Passed    0.06 sec
  5/130 Test   #5: testFPB ............................   Passed    0.06 sec
test 6
test 6
        Start   6: testMultiFPB
        Start   6: testMultiFPB
6: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testMultiFPB
6: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/testMultiFPB
6: Test timeout computed to be: 9.99988e+06
6: Test timeout computed to be: 9.99988e+06
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader basics 
6:  Testing MultiFPBReader basics 
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Tanimoto 
6:  Testing MultiFPBReader Tanimoto 
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Tversky 
6:  Testing MultiFPBReader Tversky 
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader contains search
6:  Testing MultiFPBReader contains search
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Similarity Threaded
6:  Testing MultiFPBReader Similarity Threaded
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader Contains Threaded
6:  Testing MultiFPBReader Contains Threaded
6: [10:53:34] Finished
6: [10:53:34] Finished
6: [10:53:34] -----------------------
6: [10:53:34] -----------------------
6:  Testing MultiFPBReader edge cases 
6:  Testing MultiFPBReader edge cases 
6: [10:53:34] Finished
6: [10:53:34] Finished
  6/130 Test   #6: testMultiFPB .......................   Passed    0.06 sec
  6/130 Test   #6: testMultiFPB .......................   Passed    0.06 sec
test 7
test 7
        Start   7: pyBV
        Start   7: pyBV
7: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testBV.py"
7: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testBV.py"
7: Test timeout computed to be: 9.99988e+06
7: Test timeout computed to be: 9.99988e+06
7: .............
7: .............
7: ----------------------------------------------------------------------
7: ----------------------------------------------------------------------
7: Ran 13 tests in 0.366s
7: Ran 13 tests in 0.366s
7: 
7: 
7: OK
7: OK
  7/130 Test   #7: pyBV ...............................   Passed    0.55 sec
  7/130 Test   #7: pyBV ...............................   Passed    0.55 sec
test 8
test 8
        Start   8: pyDiscreteValueVect
        Start   8: pyDiscreteValueVect
8: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testDiscreteValueVect.py"
8: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testDiscreteValueVect.py"
8: Test timeout computed to be: 9.99988e+06
8: Test timeout computed to be: 9.99988e+06
8: ......
8: ......
8: ----------------------------------------------------------------------
8: ----------------------------------------------------------------------
8: Ran 6 tests in 0.007s
8: Ran 6 tests in 0.007s
8: 
8: 
8: OK
8: OK
  8/130 Test   #8: pyDiscreteValueVect ................   Passed    0.09 sec
  8/130 Test   #8: pyDiscreteValueVect ................   Passed    0.09 sec
test 9
test 9
        Start   9: pySparseIntVect
        Start   9: pySparseIntVect
9: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testSparseIntVect.py"
9: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testSparseIntVect.py"
9: Test timeout computed to be: 9.99988e+06
9: Test timeout computed to be: 9.99988e+06
9: ........
9: ........
9: ----------------------------------------------------------------------
9: ----------------------------------------------------------------------
9: Ran 8 tests in 0.006s
9: Ran 8 tests in 0.006s
9: 
9: 
9: OK
9: OK
  9/130 Test   #9: pySparseIntVect ....................   Passed    0.09 sec
  9/130 Test   #9: pySparseIntVect ....................   Passed    0.09 sec
test 10
test 10
        Start  10: pyFPB
        Start  10: pyFPB
10: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testFPB.py"
10: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataStructs/Wrap/testFPB.py"
10: Test timeout computed to be: 9.99988e+06
10: Test timeout computed to be: 9.99988e+06
10: .........
10: .........
10: ----------------------------------------------------------------------
10: ----------------------------------------------------------------------
10: Ran 9 tests in 0.022s
10: Ran 9 tests in 0.022s
10: 
10: 
10: OK
10: OK
 10/130 Test  #10: pyFPB ..............................   Passed    0.10 sec
 10/130 Test  #10: pyFPB ..............................   Passed    0.10 sec
test 11
test 11
        Start  11: testTransforms
        Start  11: testTransforms
11: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms
11: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testTransforms
11: Test timeout computed to be: 9.99988e+06
11: Test timeout computed to be: 9.99988e+06
11: ****************************************
11: ****************************************
11: testPointND
11: testPointND
11: ****************************************
11: ****************************************
11: testPointOps3D
11: testPointOps3D
11: ****************************************
11: ****************************************
11: testPointOps2D
11: testPointOps2D
11: ****************************************
11: ****************************************
11: test12D
11: test12D
11: ref1: 1.68362 2.99797  ref2: 1.08715 4.04986 
11: ref1: 1.68362 2.99797  ref2: 1.08715 4.04986 
11: pt1: 1.90007 2.73978  pt2: 1.09613 2.75896 
11: pt1: 1.90007 2.73978  pt2: 1.09613 2.75896 
11: ****************************************
11: ****************************************
11: test23D
11: test23D
11: ****************************************
11: ****************************************
11: test3MatMultiply
11: test3MatMultiply
11: Pt1: 1 0 0  Pt2: 2 0 0 
11: Pt1: 1 0 0  Pt2: 2 0 0 
11: -Pt1: -1 -0 -0 
11: -Pt1: -1 -0 -0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 0  tp2: 0 0 0 
11: tp1: 0 0 3  tp2: 0 0 3 
11: tp1: 0 0 3  tp2: 0 0 3 
11: npt1: 0 0 3  npt2: 0 0 4 
11: npt1: 0 0 3  npt2: 0 0 4 
11: Pt1: 0 0 3  Pt2: 6.12323e-17 0 4 
11: Pt1: 0 0 3  Pt2: 6.12323e-17 0 4 
11: ****************************************
11: ****************************************
11: testFromQuaternion
11: testFromQuaternion
11: ****************************************
11: ****************************************
 11/130 Test  #11: testTransforms .....................   Passed    0.03 sec
 11/130 Test  #11: testTransforms .....................   Passed    0.03 sec
test 12
test 12
        Start  12: testGrid
        Start  12: testGrid
12: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testGrid
12: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/testGrid
12: Test timeout computed to be: 9.99988e+06
12: Test timeout computed to be: 9.99988e+06
12: ***********************************************************
12: ***********************************************************
12: Testing Grid
12: Testing Grid
12: 	---------------------------------
12: 	---------------------------------
12: 	 testUniformGrid1 
12: 	 testUniformGrid1 
12: 
12: 
12: 	---------------------------------
12: 	---------------------------------
12: 	 testUniformGrid2 
12: 	 testUniformGrid2 
12: 
12: 
12: 	---------------------------------
12: 	---------------------------------
12: 	 testUniformGridPickling 
12: 	 testUniformGridPickling 
12: 
12: 
12: 	---------------------------------
12: 	---------------------------------
12: 	 testGridOps 
12: 	 testGridOps 
12: 
12: 
12: 	---------------------------------
12: 	---------------------------------
12: 	 testUniformGridIndexing 
12: 	 testUniformGridIndexing 
12: 
12: 
 12/130 Test  #12: testGrid ...........................   Passed    0.03 sec
 12/130 Test  #12: testGrid ...........................   Passed    0.03 sec
test 13
test 13
        Start  13: testPyGeometry
        Start  13: testPyGeometry
13: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/testGeometry.py"
13: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Geometry/Wrap/testGeometry.py"
13: Test timeout computed to be: 9.99988e+06
13: Test timeout computed to be: 9.99988e+06
13: ..........
13: ..........
13: ----------------------------------------------------------------------
13: ----------------------------------------------------------------------
13: Ran 10 tests in 0.017s
13: Ran 10 tests in 0.017s
13: 
13: 
13: OK
13: OK
13: Testing Geometry wrapper
13: Testing Geometry wrapper
 13/130 Test  #13: testPyGeometry .....................   Passed    0.11 sec
 13/130 Test  #13: testPyGeometry .....................   Passed    0.11 sec
test 14
test 14
        Start  14: testMatrices
        Start  14: testMatrices
14: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/testMatrices
14: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/testMatrices
14: Test timeout computed to be: 9.99988e+06
14: Test timeout computed to be: 9.99988e+06
14: [10:53:35] -----------------------------------------
14: [10:53:35] -----------------------------------------
14: [10:53:35] Testing RDNumerics: vectors and matrices Code
14: [10:53:35] Testing RDNumerics: vectors and matrices Code
14: [10:53:35] ---------------------------------------
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test1Vector
14: [10:53:35] 	 test1Vector
14: [10:53:35] ---------------------------------------
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test2Matrix
14: [10:53:35] 	 test2Matrix
14: [10:53:35] ---------------------------------------
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test3SquareMatrix
14: [10:53:35] 	 test3SquareMatrix
14: [10:53:35] ---------------------------------------
14: [10:53:35] ---------------------------------------
14: [10:53:35] 	 test4SymmMatrix
14: [10:53:35] 	 test4SymmMatrix
 14/130 Test  #14: testMatrices .......................   Passed    0.02 sec
 14/130 Test  #14: testMatrices .......................   Passed    0.02 sec
test 15
test 15
        Start  15: testAlignment
        Start  15: testAlignment
15: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/testAlignment
15: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/testAlignment
15: Test timeout computed to be: 9.99988e+06
15: Test timeout computed to be: 9.99988e+06
15: -----------------------------------------
15: -----------------------------------------
15: Testing Alignment Code
15: Testing Alignment Code
15: ---------------------------------------
15: ---------------------------------------
15: 	 testBasic
15: 	 testBasic
15: ---------------------------------------
15: ---------------------------------------
15: 	 testTriangle
15: 	 testTriangle
15: ---------------------------------------
15: ---------------------------------------
15: 	 testFourPts
15: 	 testFourPts
15: ---------------------------------------
15: ---------------------------------------
15: 	 testReflection
15: 	 testReflection
15: ---------------------------------------
15: ---------------------------------------
 15/130 Test  #15: testAlignment ......................   Passed    0.01 sec
 15/130 Test  #15: testAlignment ......................   Passed    0.01 sec
test 16
test 16
        Start  16: pyAlignment
        Start  16: pyAlignment
16: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/testAlignment.py"
16: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Alignment/Wrap/testAlignment.py"
16: Test timeout computed to be: 9.99988e+06
16: Test timeout computed to be: 9.99988e+06
16: .....
16: .....
16: ----------------------------------------------------------------------
16: ----------------------------------------------------------------------
16: Ran 5 tests in 0.011s
16: Ran 5 tests in 0.011s
16: 
16: 
16: OK
16: OK
16: Testing Alignment Wrapper code:
16: Testing Alignment Wrapper code:
 16/130 Test  #16: pyAlignment ........................   Passed    0.09 sec
 16/130 Test  #16: pyAlignment ........................   Passed    0.09 sec
test 17
test 17
        Start  17: testOptimizer
        Start  17: testOptimizer
17: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/testOptimizer
17: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/testOptimizer
17: Test timeout computed to be: 9.99988e+06
17: Test timeout computed to be: 9.99988e+06
17: -------------------------------------
17: -------------------------------------
17: Testing linear search.
17: Testing linear search.
17:   done
17:   done
17: -------------------------------------
17: -------------------------------------
17: Testing BFGS optimization.
17: Testing BFGS optimization.
17:   done
17:   done
 17/130 Test  #17: testOptimizer ......................   Passed    0.00 sec
 17/130 Test  #17: testOptimizer ......................   Passed    0.00 sec
test 18
test 18
        Start  18: testUFFForceField
        Start  18: testUFFForceField
18: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/testUFFForceField
18: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/UFF/testUFFForceField
18: Test timeout computed to be: 9.99988e+06
18: Test timeout computed to be: 9.99988e+06
18: -------------------------------------
18: -------------------------------------
18: Unit tests for force field basics.
18: Unit tests for force field basics.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for basics of UFF bond-stretch terms.
18: Unit tests for basics of UFF bond-stretch terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for UFF bond-stretch terms.
18: Unit tests for UFF bond-stretch terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for basics of UFF angle terms.
18: Unit tests for basics of UFF angle terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for UFF angle-bend terms.
18: Unit tests for UFF angle-bend terms.
18: theta = 3.14159; theta0 = 3.14159
18: theta = 3.14159; theta0 = 3.14159
18: theta = 2.094395, param1.theta0 = 2.094395
18: theta = 2.094395, param1.theta0 = 2.094395
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18:  Test Simple UFF molecule optimizations.
18:  Test Simple UFF molecule optimizations.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for UFF nonbonded terms.
18: Unit tests for UFF nonbonded terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18:  Test UFF torsional terms.
18:  Test UFF torsional terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18:  Test UFF Parameter objects
18:  Test UFF Parameter objects
18: -------------------------------------
18: -------------------------------------
18:  Test Simple UFF molecule optimization, part 2.
18:  Test Simple UFF molecule optimization, part 2.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18:  Test UFF Torsion Conflicts.
18:  Test UFF Torsion Conflicts.
18: C 0.4783 -0.7477 -0.0753 
18: C 0.4783 -0.7477 -0.0753 
18: C -0.5465 -0.0176 0.3519 
18: C -0.5465 -0.0176 0.3519 
18: C -0.5114 1.4472 0.0870 
18: C -0.5114 1.4472 0.0870 
18: H -1.5201 -0.4838 0.2485 
18: H -1.5201 -0.4838 0.2485 
18: H 0.4696 1.8363 0.3367 
18: H 0.4696 1.8363 0.3367 
18: O -1.2618 1.9423 0.6934 
18: O -1.2618 1.9423 0.6934 
18: F -0.7163 1.6298 -0.9622 
18: F -0.7163 1.6298 -0.9622 
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for UFF distance constraint terms.
18: Unit tests for UFF distance constraint terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for all UFF constraint terms.
18: Unit tests for all UFF constraint terms.
18:   done
18:   done
18: -------------------------------------
18: -------------------------------------
18: Unit tests for copying UFF ForceFields.
18: Unit tests for copying UFF ForceFields.
18:   done
18:   done
 18/130 Test  #18: testUFFForceField ..................   Passed    0.05 sec
 18/130 Test  #18: testUFFForceField ..................   Passed    0.05 sec
test 19
test 19
        Start  19: testMMFFForceField
        Start  19: testMMFFForceField
19: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField
19: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/testMMFFForceField
19: Test timeout computed to be: 9.99988e+06
19: Test timeout computed to be: 9.99988e+06
19: -------------------------------------
19: -------------------------------------
19: Official MMFF validation suite.
19: Official MMFF validation suite.
19: 
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf...
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: All 191 tests passed
19: 
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: All 191 tests passed
19: 
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: All 191 tests passed
19: 
19: 
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
19: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: Checking against /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
19: All 191 tests passed
19: All 191 tests passed
19:   done
19:   done
19: -------------------------------------
19: -------------------------------------
19: Unit tests for all MMFF constraint terms.
19: Unit tests for all MMFF constraint terms.
19:   done
19:   done
19: -------------------------------------
19: -------------------------------------
19: Unit tests for copying MMFF ForceFields.
19: Unit tests for copying MMFF ForceFields.
19:   done
19:   done
 19/130 Test  #19: testMMFFForceField .................   Passed   10.15 sec
 19/130 Test  #19: testMMFFForceField .................   Passed   10.15 sec
test 20
test 20
        Start  20: pyForceFieldConstraints
        Start  20: pyForceFieldConstraints
20: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/testConstraints.py"
20: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ForceField/Wrap/testConstraints.py"
20: Test timeout computed to be: 9.99988e+06
20: Test timeout computed to be: 9.99988e+06
20: ...[10:53:46] 
20: ...[10:53:46] 
20: 
20: 
20: ****
20: ****
20: Invariant Violation
20: Invariant Violation
20: bad direction in linearSearch
20: bad direction in linearSearch
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Failed Expression: status >= 0
20: Failed Expression: status >= 0
20: ****
20: ****
20: 
20: 
20: ......[10:53:46] 
20: ......[10:53:46] 
20: 
20: 
20: ****
20: ****
20: Invariant Violation
20: Invariant Violation
20: bad direction in linearSearch
20: bad direction in linearSearch
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Violation occurred on line 231 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Numerics/Optimizer/BFGSOpt.h
20: Failed Expression: status >= 0
20: Failed Expression: status >= 0
20: ****
20: ****
20: 
20: 
20: ...
20: ...
20: ----------------------------------------------------------------------
20: ----------------------------------------------------------------------
20: Ran 12 tests in 0.508s
20: Ran 12 tests in 0.508s
20: 
20: 
20: OK
20: OK
 20/130 Test  #20: pyForceFieldConstraints ............   Passed    0.70 sec
 20/130 Test  #20: pyForceFieldConstraints ............   Passed    0.70 sec
test 21
test 21
        Start  21: testDistGeom
        Start  21: testDistGeom
21: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom
21: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/testDistGeom
21: Test timeout computed to be: 9.99988e+06
21: Test timeout computed to be: 9.99988e+06
21: ***********************************************************
21: ***********************************************************
21:    test1 
21:    test1 
21: ***********************************************************
21: ***********************************************************
21:    testIssue216 
21:    testIssue216 
21: Rows: 4 Columns: 4
21: Rows: 4 Columns: 4
21:       0      1      1      1
21:       0      1      1      1
21:       1      0      1      1
21:       1      0      1      1
21:       1      1      0      1
21:       1      1      0      1
21:       1      1      1      0
21:       1      1      1      0
21: ***********************************************************
21: ***********************************************************
21: 
21: 
 21/130 Test  #21: testDistGeom .......................   Passed    0.01 sec
 21/130 Test  #21: testDistGeom .......................   Passed    0.01 sec
test 22
test 22
        Start  22: pyDistGeom
        Start  22: pyDistGeom
22: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/rough_test.py"
22: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DistGeom/Wrap/rough_test.py"
22: Test timeout computed to be: 9.99988e+06
22: Test timeout computed to be: 9.99988e+06
22: ......
22: ......
22: ----------------------------------------------------------------------
22: ----------------------------------------------------------------------
22: Ran 6 tests in 0.010s
22: Ran 6 tests in 0.010s
22: 
22: 
22: OK
22: OK
 22/130 Test  #22: pyDistGeom .........................   Passed    0.09 sec
 22/130 Test  #22: pyDistGeom .........................   Passed    0.09 sec
test 23
test 23
        Start  23: graphmolTest1
        Start  23: graphmolTest1
23: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolTest1
23: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolTest1
23: Test timeout computed to be: 9.99988e+06
23: Test timeout computed to be: 9.99988e+06
23: Atoms:
23: Atoms:
23: 	0 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	0 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	3 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	3 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	4 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	4 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 0 arom?: 0 chi: 0
23: 	5 6 C chg: 0  deg: 1 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	5 6 C chg: 0  deg: 1 exp: 3 imp: 1 hyb: 0 arom?: 0 chi: 0
23: 	6 6 C chg: 0  deg: 2 exp: 4 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	6 6 C chg: 0  deg: 2 exp: 4 imp: 0 hyb: 0 arom?: 0 chi: 0
23: 	7 7 N chg: 0  deg: 2 exp: 1 imp: 2 hyb: 0 arom?: 1 chi: 0
23: 	7 7 N chg: 0  deg: 2 exp: 1 imp: 2 hyb: 0 arom?: 1 chi: 0
23: 	8 22 Ti chg: 0  deg: 1 exp: [10:53:46] 
23: 	8 22 Ti chg: 0  deg: 1 exp: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: getExplicitValence() called without call to calcExplicitValence()
23: getExplicitValence() called without call to calcExplicitValence()
23: Violation occurred on line 162 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
23: Violation occurred on line 162 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
23: Failed Expression: d_explicitValence > -1
23: Failed Expression: d_explicitValence > -1
23: ****
23: ****
23: 
23: 
23: N/A imp: -1 hyb: 0 arom?: 0 chi: 0
23: N/A imp: -1 hyb: 0 arom?: 0 chi: 0
23: Bonds:
23: Bonds:
23: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
23: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
23: 	1 1->2 order: 2 conj?: 0 aromatic?: 0
23: 	1 1->2 order: 2 conj?: 0 aromatic?: 0
23: 	2 2->3 order: 1 conj?: 0 aromatic?: 0
23: 	2 2->3 order: 1 conj?: 0 aromatic?: 0
23: 	3 0->4 order: 1 conj?: 0 aromatic?: 0
23: 	3 0->4 order: 1 conj?: 0 aromatic?: 0
23: 	4 5->6 order: 3 conj?: 0 aromatic?: 0
23: 	4 5->6 order: 3 conj?: 0 aromatic?: 0
23: 	5 6->7 order: 1 conj?: 0 aromatic?: 0
23: 	5 6->7 order: 1 conj?: 0 aromatic?: 0
23: 	6 7->8 order: 2 conj?: 0 aromatic?: 0
23: 	6 7->8 order: 2 conj?: 0 aromatic?: 0
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: bond already exists
23: bond already exists
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: bond already exists
23: bond already exists
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Violation occurred on line 278 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: Failed Expression: !(boost::edge(atomIdx1, atomIdx2, d_graph).second)
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: attempt to add self-bond
23: attempt to add self-bond
23: Violation occurred on line 276 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Violation occurred on line 276 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
23: Failed Expression: atomIdx1 != atomIdx2
23: Failed Expression: atomIdx1 != atomIdx2
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: bond already exists
23: bond already exists
23: Violation occurred on line 350 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Violation occurred on line 350 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Failed Expression: !(boost::edge(bond_pin->getBeginAtomIdx(), bond_pin->getEndAtomIdx(), d_graph).second)
23: Failed Expression: !(boost::edge(bond_pin->getBeginAtomIdx(), bond_pin->getEndAtomIdx(), d_graph).second)
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: attempt to add self-bond
23: attempt to add self-bond
23: Violation occurred on line 347 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Violation occurred on line 347 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
23: Failed Expression: bond_pin->getBeginAtomIdx() != bond_pin->getEndAtomIdx()
23: Failed Expression: bond_pin->getBeginAtomIdx() != bond_pin->getEndAtomIdx()
23: ****
23: ****
23: 
23: 
23: [10:53:46] Explicit valence for atom # 0 B, 4, is greater than permitted
23: [10:53:46] Explicit valence for atom # 0 B, 4, is greater than permitted
23: [10:53:46] Explicit valence for atom # 0 B, 5, is greater than permitted
23: [10:53:46] Explicit valence for atom # 0 B, 5, is greater than permitted
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Post-condition Violation
23: Post-condition Violation
23: Element 'Xx' not found
23: Element 'Xx' not found
23: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
23: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
23: Failed Expression: anum > -1
23: Failed Expression: anum > -1
23: ****
23: ****
23: 
23: 
23: [10:53:46] -------------------------------------
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github381: thread-safe initialization of the periodic table
23: [10:53:46]     Test github381: thread-safe initialization of the periodic table
23: [10:53:46]   done
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: no owner
23: no owner
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Failed Expression: dp_mol
23: Failed Expression: dp_mol
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: no owner
23: no owner
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Failed Expression: dp_mol
23: Failed Expression: dp_mol
23: ****
23: ****
23: 
23: 
23: [10:53:46]   done
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46]     Test github1041: Segfault for atom with no owner (expect some warnings)
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: no owner
23: no owner
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
23: Failed Expression: dp_mol
23: Failed Expression: dp_mol
23: ****
23: ****
23: 
23: 
23: [10:53:46] 
23: [10:53:46] 
23: 
23: 
23: ****
23: ****
23: Pre-condition Violation
23: Pre-condition Violation
23: no owner
23: no owner
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Violation occurred on line 150 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Bond.h
23: Failed Expression: dp_mol
23: Failed Expression: dp_mol
23: ****
23: ****
23: 
23: 
23: [10:53:46]   done
23: [10:53:46]   done
23: [10:53:46] -------------------------------------
23: [10:53:46] -------------------------------------
23: [10:53:46]     Test github1453: RWMol.clear() should reset the numBonds count.
23: [10:53:46]     Test github1453: RWMol.clear() should reset the numBonds count.
23: [10:53:46]   done
23: [10:53:46]   done
 23/130 Test  #23: graphmolTest1 ......................   Passed    0.09 sec
 23/130 Test  #23: graphmolTest1 ......................   Passed    0.09 sec
test 24
test 24
        Start  24: graphmolcpTest
        Start  24: graphmolcpTest
24: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolcpTest
24: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolcpTest
24: Test timeout computed to be: 9.99988e+06
24: Test timeout computed to be: 9.99988e+06
24: [10:53:46] -----------------------
24: [10:53:46] -----------------------
24:  Testing behavior of copied queries
24:  Testing behavior of copied queries
24: 
24: 
24: 
24: 
24: 
24: 
24: COPY
24: COPY
24: [10:53:46] Finished
24: [10:53:46] Finished
24: [10:53:46] -----------------------
24: [10:53:46] -----------------------
24:  Testing copying conformers
24:  Testing copying conformers
24: [10:53:46] Finished
24: [10:53:46] Finished
 24/130 Test  #24: graphmolcpTest .....................   Passed    0.02 sec
 24/130 Test  #24: graphmolcpTest .....................   Passed    0.02 sec
test 25
test 25
        Start  25: graphmolqueryTest
        Start  25: graphmolqueryTest
25: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolqueryTest
25: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolqueryTest
25: Test timeout computed to be: 9.99988e+06
25: Test timeout computed to be: 9.99988e+06
25: [10:53:46] ---------------------- Test1
25: [10:53:46] ---------------------- Test1
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test2
25: [10:53:46] ---------------------- Test2
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test3
25: [10:53:46] ---------------------- Test3
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test4
25: [10:53:46] ---------------------- Test4
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test5
25: [10:53:46] ---------------------- Test5
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] -------------------------------------
25: [10:53:46] -------------------------------------
25: [10:53:46] Testing query--query matches
25: [10:53:46] Testing query--query matches
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test issue 2892580
25: [10:53:46] ---------------------- Test issue 2892580
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test github issue 53: query molecules not matching [R]
25: [10:53:46] ---------------------- Test github issue 53: query molecules not matching [R]
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test queries using qualifiers instead of ==
25: [10:53:46] ---------------------- Test queries using qualifiers instead of ==
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
25: [10:53:46] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test extra atom queries
25: [10:53:46] ---------------------- Test extra atom queries
25: [10:53:46] Done!
25: [10:53:46] Done!
25: [10:53:46] ---------------------- Test extra bond queries
25: [10:53:46] ---------------------- Test extra bond queries
25: [10:53:46] Done!
25: [10:53:46] Done!
 25/130 Test  #25: graphmolqueryTest ..................   Passed    0.01 sec
 25/130 Test  #25: graphmolqueryTest ..................   Passed    0.01 sec
test 26
test 26
        Start  26: graphmolMolOpsTest
        Start  26: graphmolMolOpsTest
26: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMolOpsTest
26: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMolOpsTest
26: Test timeout computed to be: 9.99988e+06
26: Test timeout computed to be: 9.99988e+06
26: [10:53:46] C1CC1
26: [10:53:46] C1CC1
26: [10:53:46] C1CCC1
26: [10:53:46] C1CCC1
26: [10:53:46] C1CCCCCC1
26: [10:53:46] C1CCCCCC1
26: [10:53:46] C1C(CCC)CC(C(C)CCC(CC))CCC1
26: [10:53:46] C1C(CCC)CC(C(C)CCC(CC))CCC1
26: [10:53:46] CC1CCC1
26: [10:53:46] CC1CCC1
26: [10:53:46] CC1C(C2)CCC2C1
26: [10:53:46] CC1C(C2)CCC2C1
26: [10:53:46] BFSR: 5
26: [10:53:46] BFSR: 5
26: [10:53:46] BFSR: 6
26: [10:53:46] BFSR: 6
26: [10:53:46] ( [10:53:46]  0[10:53:46]  5[10:53:46]  2[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  5[10:53:46]  2[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  4[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  4[10:53:46]  1[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  6[10:53:46]  5[10:53:46] )
26: [10:53:46] ( [10:53:46]  0[10:53:46]  7[10:53:46]  6[10:53:46]  5[10:53:46] )
26: [10:53:46] ( [10:53:46]  1[10:53:46]  4[10:53:46]  3[10:53:46]  2[10:53:46] )
26: [10:53:46] ( [10:53:46]  1[10:53:46]  4[10:53:46]  3[10:53:46]  2[10:53:46] )
26: [10:53:46] ( [10:53:46]  5[10:53:46]  2[10:53:46]  3[10:53:46]  6[10:53:46] )
26: [10:53:46] ( [10:53:46]  5[10:53:46]  2[10:53:46]  3[10:53:46]  6[10:53:46] )
26: [10:53:46] ( [10:53:46]  7[10:53:46]  6[10:53:46]  3[10:53:46]  4[10:53:46] )
26: [10:53:46] ( [10:53:46]  7[10:53:46]  6[10:53:46]  3[10:53:46]  4[10:53:46] )
26: [10:53:46] C(C1C2C3C41)(C2C35)C45
26: [10:53:46] C(C1C2C3C41)(C2C35)C45
26: [10:53:46] C1CC2C1CCC2
26: [10:53:46] C1CC2C1CCC2
26: [10:53:46] 
26: [10:53:46] 
26: C12=C3C=CC=C1C=CC2=CC=C3
26: C12=C3C=CC=C1C=CC2=CC=C3
26: [10:53:46] C12=C3C=CC=C1C=CC2=CC=C3
26: [10:53:46] C12=C3C=CC=C1C=CC2=CC=C3
26: [10:53:46] C1(O)C(O)C(O)C1O
26: [10:53:46] C1(O)C(O)C(O)C1O
26: [10:53:46] Count: 5
26: [10:53:46] Count: 5
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Hydrogen Ops
26:  Testing Hydrogen Ops
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Distance Matrix Operations
26:  Testing Distance Matrix Operations
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Atom Ranking
26:  Testing Atom Ranking
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing double bond stereochemistry
26:  Testing double bond stereochemistry
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 183
26:  Testing Issue 183
26: 
26: 
26: Atoms:
26: Atoms:
26: 	0 17 Cl chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	0 17 Cl chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	2 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	2 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	5 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	5 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	7 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	7 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	8 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	8 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	10 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	10 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	11 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	11 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
26: 	12 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	12 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
26: 	13 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: 	13 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
26: Bonds:
26: Bonds:
26: 	0 0->1 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	0 0->1 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
26: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
26: 	2 1->3 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	2 1->3 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	3 3->4 order: 1 dir: 3 conj?: 1 aromatic?: 0
26: 	3 3->4 order: 1 dir: 3 conj?: 1 aromatic?: 0
26: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
26: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
26: 	5 4->6 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	5 4->6 order: 2 stereo: 3 conj?: 1 aromatic?: 0
26: 	6 6->7 order: 1 dir: 4 conj?: 0 aromatic?: 0
26: 	6 6->7 order: 1 dir: 4 conj?: 0 aromatic?: 0
26: 	7 6->8 order: 1 conj?: 0 aromatic?: 0
26: 	7 6->8 order: 1 conj?: 0 aromatic?: 0
26: 	8 3->9 order: 1 dir: 4 conj?: 1 aromatic?: 0
26: 	8 3->9 order: 1 dir: 4 conj?: 1 aromatic?: 0
26: 	9 9->10 order: 1 conj?: 0 aromatic?: 0
26: 	9 9->10 order: 1 conj?: 0 aromatic?: 0
26: 	10 9->11 order: 2 stereo: 2 conj?: 1 aromatic?: 0
26: 	10 9->11 order: 2 stereo: 2 conj?: 1 aromatic?: 0
26: 	11 11->12 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	11 11->12 order: 1 dir: 3 conj?: 0 aromatic?: 0
26: 	12 11->13 order: 1 conj?: 0 aromatic?: 0
26: 	12 11->13 order: 1 conj?: 0 aromatic?: 0
26: [10:53:46] ref: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] ref: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] smi: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] smi: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 188: bad CIP rankings
26:  Testing Issue 188: bad CIP rankings
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 189: BondDirs not getting properly cleared.
26:  Testing Issue 189: BondDirs not getting properly cleared.
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing shortest path code. This should finish very quickly.
26:  Testing shortest path code. This should finish very quickly.
26: path: 2
26: path: 2
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 190: BondDirs incorrectly cleared.
26:  Testing Issue 190: BondDirs incorrectly cleared.
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 211
26:  Testing Issue 211
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 210
26:  Testing Issue 210
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Issue 212
26:  Testing Issue 212
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing AddHs with coordinates
26:  Testing AddHs with coordinates
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:46] -----------------------
26: [10:53:46] -----------------------
26:  Testing Add Confomers
26:  Testing Add Confomers
26: [10:53:46] Finished 
26: [10:53:46] Finished 
26:  [10:53:46] -----------------------
26:  [10:53:46] -----------------------
26:  Sanitization special cases
26:  Sanitization special cases
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Warning: conflicting stereochemistry at atom 10 ignored.
26: [10:53:46] Finished
26: [10:53:46] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Issue 276
26:  Issue 276
26: [10:53:47] Finished 
26: [10:53:47] Finished 
26:  [10:53:47] -----------------------
26:  [10:53:47] -----------------------
26:  Additional Aromaticity Cases
26:  Additional Aromaticity Cases
26: [10:53:47] Finished 
26: [10:53:47] Finished 
26:  [10:53:47] -----------------------
26:  [10:53:47] -----------------------
26:  Testing sf.net issue 1694023 (bad chiral smiles after removing Hs) 
26:  Testing sf.net issue 1694023 (bad chiral smiles after removing Hs) 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1719053 (Ring stereochemistry incorrectly removed) 
26:  Testing sf.net issue 1719053 (Ring stereochemistry incorrectly removed) 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1811276 (kekulization failing) 
26:  Testing sf.net issue 1811276 (kekulization failing) 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1836576 (sanitization crash) 
26:  Testing sf.net issue 1836576 (sanitization crash) 
26: [10:53:47] Explicit valence for atom # 0 B, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 0 B, 5, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing impact of removeHs on chirality
26:  Testing impact of removeHs on chirality
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing SFIssue1894348 (impact of removeHs on bond stereo atoms)
26:  Testing SFIssue1894348 (impact of removeHs on bond stereo atoms)
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 1942657 
26:  Testing sf.net issue 1942657 
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 C, 5, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 Si, 7, is greater than permitted
26: [10:53:47] Explicit valence for atom # 1 Si, 7, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 198608 
26:  Testing sf.net issue 198608 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing hybridization assignment 
26:  Testing hybridization assignment 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing some aromaticity edge cases 
26:  Testing some aromaticity edge cases 
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2196817: handling of aromatic dummies
26:  Testing sf.net issue 2196817: handling of aromatic dummies
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2208994 : kekulization error
26:  Testing sf.net issue 2208994 : kekulization error
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2313979: aromaticity assignment hangs 
26:  Testing sf.net issue 2313979: aromaticity assignment hangs 
26: [10:53:47]    Doing molecule: bucky1
26: [10:53:47]    Doing molecule: bucky1
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47]    <<< Done.
26: [10:53:47]    Doing molecule: bucky2
26: [10:53:47]    Doing molecule: bucky2
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47]    <<< Done.
26: [10:53:47]    Doing molecule: bucky3
26: [10:53:47]    Doing molecule: bucky3
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]      This should finish in a few seconds.  >>>
26: [10:53:47]    <<< Done.
26: [10:53:47]    <<< Done.
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2316677 : canonicalization error
26:  Testing sf.net issue 2316677 : canonicalization error
26: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1
26: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2951221 : hydrogens added with bad coordinates
26:  Testing sf.net issue 2951221 : hydrogens added with bad coordinates
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2952255 : bad assignment of radicals to early elements
26:  Testing sf.net issue 2952255 : bad assignment of radicals to early elements
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 3185548 : problems with SSSR code
26:  Testing sf.net issue 3185548 : problems with SSSR code
26: [10:53:47]   Starting file read 1
26: [10:53:47]   Starting file read 1
26: [10:53:47]   finished
26: [10:53:47]   finished
26: [10:53:47]   Starting file read 2
26: [10:53:47]   Starting file read 2
26: [10:53:47]   finished
26: [10:53:47]   finished
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] 	done
26: [10:53:47] 	done
26: [10:53:47] -------------------------------------
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing fast find rings
26: [10:53:47] Testing fast find rings
26: [10:53:47] 	done
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 2830244: make sure that non-ring aromatic atoms generate errors:
26:  Testing sf.net issue 2830244: make sure that non-ring aromatic atoms generate errors:
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] non-ring atom 0 marked aromatic
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] Testing Issue 3349243
26: [10:53:47] 	done
26: [10:53:47] 	done
26: [10:53:47] -------------------------------------
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing canonicalization basics
26: [10:53:47] Testing canonicalization basics
26: [10:53:47] Conflicting single bond directions around double bond at index 17.
26: [10:53:47] Conflicting single bond directions around double bond at index 17.
26: [10:53:47]   BondStereo set to STEREONONE and single bond directions set to NONE.
26: [10:53:47]   BondStereo set to STEREONONE and single bond directions set to NONE.
26: [10:53:47] 	done
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 3549146: problems after mergeQueryHs
26:  Testing sf.net issue 3549146: problems after mergeQueryHs
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 249: finding rings consumes all memory
26:  Testing sf.net issue 249: finding rings consumes all memory
26: starting ring finding
26: starting ring finding
26: done
26: done
26: starting ring finding
26: starting ring finding
26: done
26: done
26: starting ring finding
26: starting ring finding
26: done
26: done
26: starting sanitization
26: starting sanitization
26: done
26: done
26: starting sanitization
26: starting sanitization
26: done
26: done
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 256: bad atom counts
26:  Testing sf.net issue 256: bad atom counts
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 266: ring finding error
26:  Testing sf.net issue 266: ring finding error
26: starting ring finding
26: starting ring finding
26: done
26: done
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 266: ring finding error
26:  Testing sf.net issue 266: ring finding error
26: starting ring finding
26: starting ring finding
26: done
26: done
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing sf.net issue 272: removing two-coordinate Hs
26:  Testing sf.net issue 272: removing two-coordinate Hs
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing Github issue 8 (impact of removeAtom on bond stereo atoms)
26:  Testing Github issue 8 (impact of removeAtom on bond stereo atoms)
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing Github issue 42 (impact of removeAtom on atom stereochem)
26:  Testing Github issue 42 (impact of removeAtom on atom stereochem)
26: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1
26: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing Github issue 65 (kekulization of boron-containing aromatic rings)
26:  Testing Github issue 65 (kekulization of boron-containing aromatic rings)
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing Github issue 72 (problems with bad benzothiazolium structure)
26:  Testing Github issue 72 (problems with bad benzothiazolium structure)
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing renumbering atoms
26:  Testing renumbering atoms
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing github issue 141: Kekulization of molecule with aromatic N leaves the explicit H there.
26:  Testing github issue 141: Kekulization of molecule with aromatic N leaves the explicit H there.
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26: [10:53:47] Testing ZBO basics
26: [10:53:47] Testing ZBO basics
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing operator= on molecules
26:  Testing operator= on molecules
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -------------------------------------
26: [10:53:47] -------------------------------------
26: [10:53:47] Testing Atom-Atom matching behavior
26: [10:53:47] Testing Atom-Atom matching behavior
26: [10:53:47] 	done
26: [10:53:47] 	done
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing github issue 190: Don't merge Hs onto dummy atoms.
26:  Testing github issue 190: Don't merge Hs onto dummy atoms.
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing getMolFragsWithQuery().
26:  Testing getMolFragsWithQuery().
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing CIP chirality
26:  Testing CIP chirality
26: -------------------------------
26: -------------------------------
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing github issue 418: removeHs not updating H count.
26:  Testing github issue 418: removeHs not updating H count.
26: [10:53:47] Explicit valence for atom # 0 N, 4, is greater than permitted
26: [10:53:47] Explicit valence for atom # 0 N, 4, is greater than permitted
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing github issue 432: problems caused by aromatic Ns with radical electrons.
26:  Testing github issue 432: problems caused by aromatic Ns with radical electrons.
26: [10:53:47] Finished
26: [10:53:47] Finished
26: [10:53:47] -----------------------
26: [10:53:47] -----------------------
26:  Testing github issue 443: kekulization problems caused by any bonds.
26:  Testing github issue 443: kekulization problems caused by any bonds.
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 447: Radicals are not correctly assigned when reading from SMILES.
26:  Testing github issue 447: Radicals are not correctly assigned when reading from SMILES.
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing generation of new molecules from molecule fragments
26:  Testing generation of new molecules from molecule fragments
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 510: Hexafluorophosphate cannot be handled
26:  Testing github issue 510: Hexafluorophosphate cannot be handled
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 526: Bad ring finding in a complex fused ring
26:  Testing github issue 526: Bad ring finding in a complex fused ring
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 539: Lack of conjugation in allyl cations, lack of aromaticity perception/ability to kekulize aromatic carbocations such as cyclopropenyl and tropylium
26:  Testing github issue 539: Lack of conjugation in allyl cations, lack of aromaticity perception/ability to kekulize aromatic carbocations such as cyclopropenyl and tropylium
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 678: failure in AddHs when addCoords is true and coords are all zero
26:  Testing github issue 678: failure in AddHs when addCoords is true and coords are all zero
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 717: AddHs cip rank is declared <int> should be unsigned int
26:  Testing github issue 717: AddHs cip rank is declared <int> should be unsigned int
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github #754 : loss of double bond geometry with removeHs
26:  Testing github #754 : loss of double bond geometry with removeHs
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github #805 : Pre-condition Violation: bad bond type
26:  Testing github #805 : Pre-condition Violation: bad bond type
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github #518 : Rings containing all dummy atoms with single bonds are flagged as aromatic
26:  Testing github #518 : Rings containing all dummy atoms with single bonds are flagged as aromatic
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing error reporting for kekulization
26:  Testing error reporting for kekulization
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: 
26: 
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 6 7 8 9 10
26: 
26: 
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: [10:53:48] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
26: 
26: 
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue #868: inappropriate warning from MergeQueryHs
26:  Testing github issue #868: inappropriate warning from MergeQueryHs
26: [10:53:48] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
26: [10:53:48] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
26: [10:53:48] 	done
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing simple aromaticity
26:  Testing simple aromaticity
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing custom aromaticity
26:  Testing custom aromaticity
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 908: AddHs() using 3D coordinates with 2D conformations
26:  Testing github issue 908: AddHs() using 3D coordinates with 2D conformations
26: [10:53:48] 	done
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 962: Kekulization issues post successful smiles parsing
26:  Testing github issue 962: Kekulization issues post successful smiles parsing
26: [10:53:48] 	done
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 1021: AssignStereochemistry() giving incorrect results after FastFindRings()
26:  Testing github issue 1021: AssignStereochemistry() giving incorrect results after FastFindRings()
26: [10:53:48] 	done
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 607: AssignAtomChiralTagsFromStructure() not recognizing chiral S
26:  Testing github issue 607: AssignAtomChiralTagsFromStructure() not recognizing chiral S
26: [10:53:48] 	done
26: [10:53:48] 	done
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing adjustQueryProperties()
26:  Testing adjustQueryProperties()
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 1204: Support tetravalent and hexavalent Te
26:  Testing github issue 1204: Support tetravalent and hexavalent Te
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing findPotentialStereoBonds
26:  Testing findPotentialStereoBonds
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing Bond::setStereo(Bond::STEREOCIS / Bond::STEREOTRANS)
26:  Testing Bond::setStereo(Bond::STEREOCIS / Bond::STEREOTRANS)
26: [10:53:48] C/C=C\C == C/C=C\C 4
26: [10:53:48] C/C=C\C == C/C=C\C 4
26: [10:53:48] C/C=C/C == C/C=C/C 5
26: [10:53:48] C/C=C/C == C/C=C/C 5
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C\C=C/C == C/C=C\C=C/C 4
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C/C=C\C == C/C=C/C=C\C 5
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C\C=C\C == C/C=C\C=C\C 4
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C/C=C/C=C/C == C/C=C/C=C/C 5
26: [10:53:48] C(\C)=C\C == C(\C)=C\C 4
26: [10:53:48] C(\C)=C\C == C(\C)=C\C 4
26: [10:53:48] C(\C)=C/C == C(\C)=C/C 5
26: [10:53:48] C(\C)=C/C == C(\C)=C/C 5
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C\C=C/C == C(\C)=C\C=C/C 4
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C/C=C\C == C(\C)=C/C=C\C 5
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C\C=C\C == C(\C)=C\C=C\C 4
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] C(\C)=C/C=C/C == C(\C)=C/C=C/C 5
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C\Cl == F/C=C\Cl 4
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] F/C=C/Cl == F/C=C/Cl 5
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing Bond::setStereoAtoms(...)
26:  Testing Bond::setStereoAtoms(...)
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(\Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] F/C(Cl)=C(/Br)I
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 1478: 
26:  Testing github issue 1478: 
26:   Aromatic rings composed solely of dummy atoms should not be kekulized
26:   Aromatic rings composed solely of dummy atoms should not be kekulized
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 1439: 
26:  Testing github issue 1439: 
26: RemoveHs() removes H atom attached to dummy if it came from AddHs()
26: RemoveHs() removes H atom attached to dummy if it came from AddHs()
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing github issue 1281: 
26:  Testing github issue 1281: 
26: RDKit gets stuck on PubChem CID 102128817
26: RDKit gets stuck on PubChem CID 102128817
26: [10:53:48] Maximum BFS search size exceeded.
26: [10:53:48] Maximum BFS search size exceeded.
26: This is likely due to a highly symmetric fused ring system.
26: This is likely due to a highly symmetric fused ring system.
26: [10:53:48] Maximum BFS search size exceeded.
26: [10:53:48] Maximum BFS search size exceeded.
26: This is likely due to a highly symmetric fused ring system.
26: This is likely due to a highly symmetric fused ring system.
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing Github issue 1605: Inappropriate bad valence exception during partial sanitization. 
26:  Testing Github issue 1605: Inappropriate bad valence exception during partial sanitization. 
26: [10:53:48] Finished
26: [10:53:48] Finished
26: [10:53:48] -----------------------
26: [10:53:48] -----------------------
26:  Testing Github issue 1703: Dative bonds interfere with kekulization and the perception of aromaticity
26:  Testing Github issue 1703: Dative bonds interfere with kekulization and the perception of aromaticity
26: [10:53:48] Finished
26: [10:53:48] Finished
 26/130 Test  #26: graphmolMolOpsTest .................   Passed    1.72 sec
 26/130 Test  #26: graphmolMolOpsTest .................   Passed    1.72 sec
test 27
test 27
        Start  27: graphmoltestCanon
        Start  27: graphmoltestCanon
27: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestCanon
27: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestCanon
27: Test timeout computed to be: 9.99988e+06
27: Test timeout computed to be: 9.99988e+06
27: [10:53:48] Pass in the list of smiles
27: [10:53:48] Pass in the list of smiles
27: [10:53:48] FINISHED after 0 lines.
27: [10:53:48] FINISHED after 0 lines.
 27/130 Test  #27: graphmoltestCanon ..................   Passed    0.01 sec
 27/130 Test  #27: graphmoltestCanon ..................   Passed    0.01 sec
test 28
test 28
        Start  28: graphmoltestChirality
        Start  28: graphmoltestChirality
28: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestChirality
28: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestChirality
28: Test timeout computed to be: 9.99988e+06
28: Test timeout computed to be: 9.99988e+06
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from SMILES
28: [10:53:48] CIP codes from SMILES
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol file (1)
28: [10:53:48] CIP codes from a mol file (1)
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol file (2)
28: [10:53:48] CIP codes from a mol file (2)
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> smiles 2 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> smiles 2 <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] CIP codes from a mol->smiles conversion (1)
28: [10:53:48] CIP codes from a mol->smiles conversion (1)
28: [10:53:48] smiout: N[C@H](O)I
28: [10:53:48] smiout: N[C@H](O)I
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] chirality cleanup
28: [10:53:48] chirality cleanup
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] chirality perception from 3D coordinates: 
28: [10:53:48] chirality perception from 3D coordinates: 
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] iterative chirality (sf.net issue 1931470): 
28: [10:53:48] iterative chirality (sf.net issue 1931470): 
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@H]1C C[C@H]1CCC[C@@H](C)[C@H]1C
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@H]1C C[C@H]1CCC[C@@H](C)[C@H]1C
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@@H]1C C[C@H]1CCC[C@@H](C)[C@@H]1C
28: [10:53:48]  : C[C@H]1CCC[C@@H](C)[C@@H]1C C[C@H]1CCC[C@@H](C)[C@@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
28: [10:53:48]  : C/C=C\[C@@H](C)/C=C/C C/C=C\[C@@H](C)/C=C/C
28: [10:53:48]  : C/C=C\[C@@H](C)/C=C/C C/C=C\[C@@H](C)/C=C/C
28: [10:53:48]  : C/C=C\[C@H](C)/C=C/C C/C=C\[C@H](C)/C=C/C
28: [10:53:48]  : C/C=C\[C@H](C)/C=C/C C/C=C\[C@H](C)/C=C/C
28: [10:53:48]  : C/C=C/C(C)/C=C/C C/C=C/C(C)/C=C/C
28: [10:53:48]  : C/C=C/C(C)/C=C/C C/C=C/C(C)/C=C/C
28: [10:53:48]  : CC=C[C@@H](C)/C=C/C CC=C[C@@H](C)/C=C/C
28: [10:53:48]  : CC=C[C@@H](C)/C=C/C CC=C[C@@H](C)/C=C/C
28: [10:53:48]  : CC=C[C@H](C)/C=C\C CC=C[C@H](C)/C=C\C
28: [10:53:48]  : CC=C[C@H](C)/C=C\C CC=C[C@H](C)/C=C\C
28: [10:53:48]  : C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : CC=C([C@](C)(F)Cl)[C@](C)(F)Cl CC=C([C@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : CC=C([C@](C)(F)Cl)[C@](C)(F)Cl CC=C([C@](C)(F)Cl)[C@](C)(F)Cl
28: [10:53:48]  : C/C=C\C(\C=C\C)=C\C C/C=C\C(\C=C\C)=C\C
28: [10:53:48]  : C/C=C\C(\C=C\C)=C\C C/C=C\C(\C=C\C)=C\C
28: [10:53:48]  : C/C=C\C(=C/C)\C=C\C C/C=C\C(=C/C)\C=C\C
28: [10:53:48]  : C/C=C\C(=C/C)\C=C\C C/C=C\C(=C/C)\C=C\C
28: [10:53:48]  : CC=C(/C=C/C)/C=C/C CC=C(/C=C/C)/C=C/C
28: [10:53:48]  : CC=C(/C=C/C)/C=C/C CC=C(/C=C/C)/C=C/C
28: [10:53:48]  : CC=C(/C=C\C)/C=C\C CC=C(/C=C\C)/C=C\C
28: [10:53:48]  : CC=C(/C=C\C)/C=C\C CC=C(/C=C\C)/C=C\C
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] testing that the removal of bond directions is correct: 
28: [10:53:48] testing that the removal of bond directions is correct: 
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 2762917: chirality swap on addHs()
28: [10:53:48] Issue 2762917: chirality swap on addHs()
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3009911: bad atom priorities
28: [10:53:48] Issue 3009911: bad atom priorities
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3139534: stereochemistry in larger rings
28: [10:53:48] Issue 3139534: stereochemistry in larger rings
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Test findChiralAtoms.
28: [10:53:48] Test findChiralAtoms.
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 3453172: stereochemistry at three-coordinate S and Se
28: [10:53:48] Issue 3453172: stereochemistry at three-coordinate S and Se
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] test ring stereochemistry 
28: [10:53:48] test ring stereochemistry 
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
28: [10:53:48]  : C[C@H]1CC[C@H](F)CC1 C[C@H]1CC[C@H](F)CC1
28: [10:53:48]  : C[C@H]1CC[C@H](F)CC1 C[C@H]1CC[C@H](F)CC1
28: [10:53:48]  : CC1(C)CCC(F)CC1 CC1(C)CCC(F)CC1
28: [10:53:48]  : CC1(C)CCC(F)CC1 CC1(C)CCC(F)CC1
28: [10:53:48]  : C1CC2CCC1CC2 C1CC2CCC1CC2
28: [10:53:48]  : C1CC2CCC1CC2 C1CC2CCC1CC2
28: [10:53:48]  : CC12CCC(C)(CC1)CC2 CC12CCC(C)(CC1)CC2
28: [10:53:48]  : CC12CCC(C)(CC1)CC2 CC12CCC(C)(CC1)CC2
28: [10:53:48]  : CC12CCC(C)(NC1)OC2 C[C@]12CC[C@](C)(CN1)CO2
28: [10:53:48]  : CC12CCC(C)(NC1)OC2 C[C@]12CC[C@](C)(CN1)CO2
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 87: removal of bond wedging
28: [10:53:48] Testing github issue 87: removal of bond wedging
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 90: isotopes and chirality
28: [10:53:48] Testing github issue 90: isotopes and chirality
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Issue 2705543: 
28: [10:53:48] Issue 2705543: 
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 553: Chirality not affected by atom-map index
28: [10:53:48] Testing github issue 553: Chirality not affected by atom-map index
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 803: Support larger isotope deltas in the chirality assignment
28: [10:53:48] Testing github issue 803: Support larger isotope deltas in the chirality assignment
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 1294: ring stereochemistry perception failing for spiro centers
28: [10:53:48] Testing github issue 1294: ring stereochemistry perception failing for spiro centers
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing github issue 1423: Generate a warning for conflicting bond directions
28: [10:53:48] Testing github issue 1423: Generate a warning for conflicting bond directions
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 4.
28: [10:53:48] Conflicting single bond directions around double bond at index 4.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 15.
28: [10:53:48] Conflicting single bond directions around double bond at index 15.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48] Conflicting single bond directions around double bond at index 2.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] Conflicting single bond directions around double bond at index 1.
28: [10:53:48] Conflicting single bond directions around double bond at index 1.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48]   BondStereo set to STEREONONE and single bond directions set to NONE.
28: [10:53:48] done
28: [10:53:48] done
28: [10:53:48] -------------------------------------
28: [10:53:48] -------------------------------------
28: [10:53:48] Testing assignStereochemistryFrom3D
28: [10:53:48] Testing assignStereochemistryFrom3D
28: [10:53:48] done
28: [10:53:48] done
 28/130 Test  #28: graphmoltestChirality ..............   Passed    0.10 sec
 28/130 Test  #28: graphmoltestChirality ..............   Passed    0.10 sec
test 29
test 29
        Start  29: graphmoltestPickler
        Start  29: graphmoltestPickler
29: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPickler
29: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPickler
29: Test timeout computed to be: 9.99988e+06
29: Test timeout computed to be: 9.99988e+06
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing String Pickle Roundtrips.
29: [10:53:48] Testing String Pickle Roundtrips.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing reading existing pickle file (v2).
29: [10:53:48] Testing reading existing pickle file (v2).
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing combining molecules using pickles.
29: [10:53:48] Testing combining molecules using pickles.
29: Atoms:
29: Atoms:
29: 	0 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	0 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	1 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	1 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	2 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	2 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	3 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	3 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	4 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	4 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	5 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 4 arom?: 0 chi: 0
29: 	5 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 4 arom?: 0 chi: 0
29: 	6 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: 	6 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
29: Bonds:
29: Bonds:
29: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
29: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
29: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
29: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
29: 	2 2->0 order: 1 conj?: 0 aromatic?: 0
29: 	2 2->0 order: 1 conj?: 0 aromatic?: 0
29: 	3 3->4 order: 1 conj?: 0 aromatic?: 0
29: 	3 3->4 order: 1 conj?: 0 aromatic?: 0
29: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
29: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
29: 	5 5->6 order: 1 conj?: 0 aromatic?: 0
29: 	5 5->6 order: 1 conj?: 0 aromatic?: 0
29: 	6 6->3 order: 1 conj?: 0 aromatic?: 0
29: 	6 6->3 order: 1 conj?: 0 aromatic?: 0
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue164: Roundtrip Pickle Failure.
29: [10:53:48] Testing Issue164: Roundtrip Pickle Failure.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue219: Pickle Failure with Conformations.
29: [10:53:48] Testing Issue219: Pickle Failure with Conformations.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing Issue220: Pickle problems with bond stereochemistry.
29: [10:53:48] Testing Issue220: Pickle problems with bond stereochemistry.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing query serialization.
29: [10:53:48] Testing query serialization.
29: [10:53:48] C=[$(C=O)]
29: [10:53:48] C=[$(C=O)]
29: [10:53:48] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl]
29: [10:53:48] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl]
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing radical handling in pickles.
29: [10:53:48] Testing radical handling in pickles.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -----------------------
29: [10:53:48] -----------------------
29: [10:53:48] Testing pickling of properties
29: [10:53:48] Testing pickling of properties
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 2788233.
29: [10:53:48] Testing sf.net issue 2788233.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3202580.
29: [10:53:48] Testing sf.net issue 3202580.
29:   mass! 13.0034
29:   mass! 13.0034
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3316407.
29: [10:53:48] Testing sf.net issue 3316407.
29: [10:53:48] 	done
29: [10:53:48] 	done
29: [10:53:48] -------------------------------------
29: [10:53:48] -------------------------------------
29: [10:53:48] Testing sf.net issue 3496759.
29: [10:53:48] Testing sf.net issue 3496759.
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -------------------------------------
29: [10:53:49] -------------------------------------
29: [10:53:49] Testing sf.net issue 280.
29: [10:53:49] Testing sf.net issue 280.
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -------------------------------------
29: [10:53:49] -------------------------------------
29: [10:53:49] Testing sf.net issue 285.
29: [10:53:49] Testing sf.net issue 285.
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] -----------------------
29: [10:53:49] Testing residue information handling on atoms
29: [10:53:49] Testing residue information handling on atoms
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github issue 149: cannot pickle unsanitized molecules
29: [10:53:49] Testing Github issue 149: cannot pickle unsanitized molecules
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github issue 713: Molecule serialization doesn't read/write atomic numbers above 128
29: [10:53:49] Testing Github issue 713: Molecule serialization doesn't read/write atomic numbers above 128
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github 1563: Add a canned Atom query for heavy atom degree
29: [10:53:49] Testing Github 1563: Add a canned Atom query for heavy atom degree
29: [10:53:49] 	done
29: [10:53:49] 	done
29: [10:53:49] -----------------------
29: [10:53:49] -----------------------
29: [10:53:49] Testing Github 1710: bonds that are STEREOCIS or STEREOTRANS cannot be depickled
29: [10:53:49] Testing Github 1710: bonds that are STEREOCIS or STEREOTRANS cannot be depickled
29: [10:53:49] 	done
29: [10:53:49] 	done
 29/130 Test  #29: graphmoltestPickler ................   Passed    0.27 sec
 29/130 Test  #29: graphmoltestPickler ................   Passed    0.27 sec
test 30
test 30
        Start  30: graphmoltestPicklerGlobalSetting
        Start  30: graphmoltestPicklerGlobalSetting
30: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPicklerGlobalSetting
30: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmoltestPicklerGlobalSetting
30: Test timeout computed to be: 9.99988e+06
30: Test timeout computed to be: 9.99988e+06
30: [10:53:49] -----------------------
30: [10:53:49] -----------------------
30: [10:53:49] Testing pickling of properties
30: [10:53:49] Testing pickling of properties
30: [10:53:49] 	done
30: [10:53:49] 	done
 30/130 Test  #30: graphmoltestPicklerGlobalSetting ...   Passed    0.01 sec
 30/130 Test  #30: graphmoltestPicklerGlobalSetting ...   Passed    0.01 sec
test 31
test 31
        Start  31: graphmolIterTest
        Start  31: graphmolIterTest
31: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolIterTest
31: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolIterTest
31: Test timeout computed to be: 9.99988e+06
31: Test timeout computed to be: 9.99988e+06
31: [10:53:49] test1 done
31: [10:53:49] test1 done
31: [10:53:49] test2 done
31: [10:53:49] test2 done
31: [10:53:49] test3 done
31: [10:53:49] test3 done
31: [10:53:49] test4 done
31: [10:53:49] test4 done
31: [10:53:49] test5 done
31: [10:53:49] test5 done
31: [10:53:49] test6 done
31: [10:53:49] test6 done
31: [10:53:49] test7 done
31: [10:53:49] test7 done
31: [10:53:49] test8 done
31: [10:53:49] test8 done
31: [10:53:49] testIssue263 done
31: [10:53:49] testIssue263 done
 31/130 Test  #31: graphmolIterTest ...................   Passed    0.01 sec
 31/130 Test  #31: graphmolIterTest ...................   Passed    0.01 sec
test 32
test 32
        Start  32: hanoiTest
        Start  32: hanoiTest
32: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoiTest
32: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/hanoiTest
32: Test timeout computed to be: 9.99988e+06
32: Test timeout computed to be: 9.99988e+06
32: [10:53:49] Testing the hanoi sort
32: [10:53:49] Testing the hanoi sort
32: [10:53:49] populating vectors
32: [10:53:49] populating vectors
32: [10:53:49] sorting (hanoi sort) vectors
32: [10:53:49] sorting (hanoi sort) vectors
32: [10:53:50] done: 500000
32: [10:53:50] done: 500000
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] Testing hanoi with a functor.
32: [10:53:50] Testing hanoi with a functor.
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] Testing basic partition refinement.
32: [10:53:50] Testing basic partition refinement.
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] Testing partition refinement with neighbors.
32: [10:53:50] Testing partition refinement with neighbors.
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] testing canonicalization via tie breaking.
32: [10:53:50] testing canonicalization via tie breaking.
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] testing canonicalization using the wrapper.
32: [10:53:50] testing canonicalization using the wrapper.
32: [10:53:50] Done
32: [10:53:50] Done
32: [10:53:50] testing some specific ordering problems
32: [10:53:50] testing some specific ordering problems
32: [10:53:50] Finished
32: [10:53:50] Finished
32: [10:53:50] testing chiral invariants.
32: [10:53:50] testing chiral invariants.
32: [10:53:50] Finished
32: [10:53:50] Finished
32: [10:53:50] testing unique ranks in w.r.t. renumbering.
32: [10:53:50] testing unique ranks in w.r.t. renumbering.
32: [10:53:50] Finished
32: [10:53:50] Finished
32: [10:53:50] testing mol fragments.
32: [10:53:50] testing mol fragments.
32: [10:53:50] Finished
32: [10:53:50] Finished
32: [10:53:50] testing protein round-tripping.
32: [10:53:50] testing protein round-tripping.
32: [10:53:51] Finished
32: [10:53:51] Finished
32: [10:53:51] testing stability w.r.t. renumbering.
32: [10:53:51] testing stability w.r.t. renumbering.
32: [10:54:08] Finished
32: [10:54:08] Finished
32: [10:54:08] testing smiles round-tripping.
32: [10:54:08] testing smiles round-tripping.
32: [10:54:08] Finished
32: [10:54:08] Finished
32: [10:54:08] testing github #1567: Non-canonical result from MolFragmentToSmiles()
32: [10:54:08] testing github #1567: Non-canonical result from MolFragmentToSmiles()
32: [10:54:08] Finished
32: [10:54:08] Finished
 32/130 Test  #32: hanoiTest ..........................   Passed   19.87 sec
 32/130 Test  #32: hanoiTest ..........................   Passed   19.87 sec
test 33
test 33
        Start  33: graphmolMemTest1
        Start  33: graphmolMemTest1
33: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMemTest1
33: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/graphmolMemTest1
33: Test timeout computed to be: 9.99988e+06
33: Test timeout computed to be: 9.99988e+06
33: [10:54:08] -----------------------
33: [10:54:08] -----------------------
33:  dict
33:  dict
33: [10:54:08] Finished
33: [10:54:08] Finished
 33/130 Test  #33: graphmolMemTest1 ...................   Passed    0.01 sec
 33/130 Test  #33: graphmolMemTest1 ...................   Passed    0.01 sec
test 34
test 34
        Start  34: resMolSupplierTest
        Start  34: resMolSupplierTest
34: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest
34: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/resMolSupplierTest
34: Test timeout computed to be: 9.99988e+06
34: Test timeout computed to be: 9.99988e+06
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testBaseFunctionality
34: testBaseFunctionality
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testBenzylCation
34: testBenzylCation
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testBenzylAnion
34: testBenzylAnion
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testButadiene
34: testButadiene
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testZwitterion
34: testZwitterion
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testChargeMigration
34: testChargeMigration
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testChargeSeparation1
34: testChargeSeparation1
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testChargeSeparation2
34: testChargeSeparation2
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testMultipleConjGroups1
34: testMultipleConjGroups1
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testMultipleConjGroups2
34: testMultipleConjGroups2
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testDimethylMalonate
34: testDimethylMalonate
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testMethylAcetate
34: testMethylAcetate
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testPyranium2_6dicarboxylate
34: testPyranium2_6dicarboxylate
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testSubstructMatchAcetate
34: testSubstructMatchAcetate
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testSubstructMatchDMAP
34: testSubstructMatchDMAP
34: [10:54:08] -----------------------
34: [10:54:08] -----------------------
34: testCrambin
34: testCrambin
34: [10:54:09] -----------------------
34: [10:54:09] -----------------------
34: testGitHub1166
34: testGitHub1166
 34/130 Test  #34: resMolSupplierTest .................   Passed    0.71 sec
 34/130 Test  #34: resMolSupplierTest .................   Passed    0.71 sec
test 35
test 35
        Start  35: molBundleTest
        Start  35: molBundleTest
35: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molBundleTest
35: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/molBundleTest
35: Test timeout computed to be: 9.99988e+06
35: Test timeout computed to be: 9.99988e+06
35: [10:54:09] -----------------------
35: [10:54:09] -----------------------
35:     testBaseFunctionality
35:     testBaseFunctionality
35: [10:54:09]   Done.
35: [10:54:09]   Done.
35: [10:54:09] -----------------------
35: [10:54:09] -----------------------
35:     testSubstructFunctionality
35:     testSubstructFunctionality
35: [10:54:09]   Done.
35: [10:54:09]   Done.
35: [10:54:09] -----------------------
35: [10:54:09] -----------------------
35:     testExceptions
35:     testExceptions
35: [10:54:09]   Done.
35: [10:54:09]   Done.
 35/130 Test  #35: molBundleTest ......................   Passed    0.01 sec
 35/130 Test  #35: molBundleTest ......................   Passed    0.01 sec
test 36
test 36
        Start  36: testDepictor
        Start  36: testDepictor
36: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor
36: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/testDepictor
36: Test timeout computed to be: 9.99988e+06
36: Test timeout computed to be: 9.99988e+06
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test1 
36: [10:54:09]    test1 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: 
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    testCollisions 
36: [10:54:09]    testCollisions 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: 
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    testAddHs 
36: [10:54:09]    testAddHs 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: 
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test198 
36: [10:54:09]    test198 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: 
36: 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test2 
36: [10:54:09]    test2 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test3 
36: [10:54:09]    test3 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    test4 
36: [10:54:09]    test4 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    tempTest 
36: [10:54:09]    tempTest 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Issue248 
36: [10:54:09]    Issue248 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Queries 
36: [10:54:09]    Test Queries 
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test crashes associated with RemoveHs 
36: [10:54:09]    Test crashes associated with RemoveHs 
36: [10:54:09] WARNING: bond found with stereo spec but no stereo atoms
36: [10:54:09] WARNING: bond found with stereo spec but no stereo atoms
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2091304
36: [10:54:09]    Test Issue 2091304
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2821647
36: [10:54:09]    Test Issue 2821647
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2948402
36: [10:54:09]    Test Issue 2948402
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2995724
36: [10:54:09]    Test Issue 2995724
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Testing a change of the depictor bond length
36: [10:54:09]    Testing a change of the depictor bond length
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3122141
36: [10:54:09]    Test Issue 3122141
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3135833
36: [10:54:09]    Test Issue 3135833
36: [10:54:09] Warning: stereochemistry around double bond may be incorrect in depiction.
36: [10:54:09] Warning: stereochemistry around double bond may be incorrect in depiction.
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 3487469
36: [10:54:09]    Test Issue 3487469
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 8
36: [10:54:09]    Test GitHub Issue 8
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 78
36: [10:54:09]    Test GitHub Issue 78
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 910
36: [10:54:09]    Test GitHub Issue 910
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1073
36: [10:54:09]    Test GitHub Issue 1073
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    testConstrainedCoords
36: [10:54:09]    testConstrainedCoords
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1112: Bad coordinate generation for H2
36: [10:54:09]    Test GitHub Issue 1112: Bad coordinate generation for H2
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test Issue 2303566
36: [10:54:09]    Test Issue 2303566
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09]    Test GitHub Issue 1286: GenerateDepictionMatching2DStructure isn't matching 2D structure
36: [10:54:09]    Test GitHub Issue 1286: GenerateDepictionMatching2DStructure isn't matching 2D structure
36: [10:54:09] ***********************************************************
36: [10:54:09] ***********************************************************
36: [10:54:09] -----------------------
36: [10:54:09] -----------------------
36:  Testing Github issue 1691: Acetylenic hydrogens not given appropriate 2D coordinates
36:  Testing Github issue 1691: Acetylenic hydrogens not given appropriate 2D coordinates
36: [10:54:09] Finished
36: [10:54:09] Finished
 36/130 Test  #36: testDepictor .......................   Passed    0.26 sec
 36/130 Test  #36: testDepictor .......................   Passed    0.26 sec
test 37
test 37
        Start  37: pyDepictor
        Start  37: pyDepictor
37: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/testDepictor.py"
37: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Depictor/Wrap/testDepictor.py"
37: Test timeout computed to be: 9.99988e+06
37: Test timeout computed to be: 9.99988e+06
37: .......
37: .......
37: ----------------------------------------------------------------------
37: ----------------------------------------------------------------------
37: Ran 7 tests in 0.162s
37: Ran 7 tests in 0.162s
37: 
37: 
37: OK
37: OK
 37/130 Test  #37: pyDepictor .........................   Passed    0.30 sec
 37/130 Test  #37: pyDepictor .........................   Passed    0.30 sec
test 38
test 38
        Start  38: smiTest1
        Start  38: smiTest1
38: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiTest1
38: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smiTest1
38: Test timeout computed to be: 9.99988e+06
38: Test timeout computed to be: 9.99988e+06
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing molecules which should parse.
38: [10:54:10] Testing molecules which should parse.
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: c1cccn(=O)c1
38: [10:54:10] ***: c1cccn(=O)c1
38: [10:54:10] ***: C
38: [10:54:10] ***: C
38: [10:54:10] ***: CC
38: [10:54:10] ***: CC
38: [10:54:10] ***: C-C
38: [10:54:10] ***: C-C
38: [10:54:10] ***: C=C
38: [10:54:10] ***: C=C
38: [10:54:10] ***: [CH2+]C[CH+2]
38: [10:54:10] ***: [CH2+]C[CH+2]
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1CC=1
38: [10:54:10] ***: C1CC=1
38: [10:54:10] ***: C=1CC1
38: [10:54:10] ***: C=1CC1
38: [10:54:10] ***: C=C-O
38: [10:54:10] ***: C=C-O
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1CC1
38: [10:54:10] ***: C1NC1
38: [10:54:10] ***: C1NC1
38: [10:54:10] ***: C1=CC1
38: [10:54:10] ***: C1=CC1
38: [10:54:10] ***: C1CCC1
38: [10:54:10] ***: C1CCC1
38: [10:54:10] ***: CC(C)CC
38: [10:54:10] ***: CC(C)CC
38: [10:54:10] ***: CC(=O)O
38: [10:54:10] ***: CC(=O)O
38: [10:54:10] ***: C1C(=O)C1
38: [10:54:10] ***: C1C(=O)C1
38: [10:54:10] ***: C1C(N)C1
38: [10:54:10] ***: C1C(N)C1
38: [10:54:10] ***: CC(O)C
38: [10:54:10] ***: CC(O)C
38: [10:54:10] ***: OC=CCC
38: [10:54:10] ***: OC=CCC
38: [10:54:10] ***: CC([O-])O
38: [10:54:10] ***: CC([O-])O
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: C1CC2C1CC2
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C/Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C\Cl
38: [10:54:10] ***: Cl/C=C\\Cl
38: [10:54:10] ***: Cl/C=C\\Cl
38: [10:54:10] ***: C1CC.CC1
38: [10:54:10] ***: C1CC.CC1
38: [10:54:10] ***: C1C(C2CC2).C2CC2C1
38: [10:54:10] ***: C1C(C2CC2).C2CC2C1
38: [10:54:10] ***: [Na+].[Cl-].[NH4+].[Cl-]
38: [10:54:10] ***: [Na+].[Cl-].[NH4+].[Cl-]
38: [10:54:10] ***: C[35Cl]
38: [10:54:10] ***: C[35Cl]
38: [10:54:10] ***: C%10CC%10
38: [10:54:10] ***: C%10CC%10
38: [10:54:10] ***: [H][H]
38: [10:54:10] ***: [H][H]
38: [10:54:10] ***: [H+]
38: [10:54:10] ***: [H+]
38: [10:54:10] ***: C[N+](=O)[O-]
38: [10:54:10] ***: C[N+](=O)[O-]
38: [10:54:10] ***: N1C(=N)SC=C1
38: [10:54:10] ***: N1C(=N)SC=C1
38: [10:54:10] ***: [O-][N+](=O)C1=CNC(=N)S1
38: [10:54:10] ***: [O-][N+](=O)C1=CNC(=N)S1
38: [10:54:10] ***: CN(=O)=O
38: [10:54:10] ***: CN(=O)=O
38: [10:54:10] ***: C1=CC=C[N+]([O-])=C1
38: [10:54:10] ***: C1=CC=C[N+]([O-])=C1
38: [10:54:10] ***: C1=CC=CN(=O)=C1
38: [10:54:10] ***: C1=CC=CN(=O)=C1
38: [10:54:10] ***:   C1=CC=CN(=O)=C1
38: [10:54:10] ***:   C1=CC=CN(=O)=C1
38: [10:54:10] ***: C1=CC=CN(=O)=C1  
38: [10:54:10] ***: C1=CC=CN(=O)=C1  
38: [10:54:10] ***:   C1=CC=CN(=O)=C1  
38: [10:54:10] ***:   C1=CC=CN(=O)=C1  
38: [10:54:10] ***: 	C1=CC=CN(=O)=C1
38: [10:54:10] ***: 	C1=CC=CN(=O)=C1
38: 
38: 
38: [10:54:10] ***: c1ccccc1[*]
38: [10:54:10] ***: c1ccccc1[*]
38: [10:54:10] ***: c1ccccc1[1*]
38: [10:54:10] ***: c1ccccc1[1*]
38: [10:54:10] ***: S1cccc1
38: [10:54:10] ***: S1cccc1
38: [10:54:10] ***: *1ccccc1
38: [10:54:10] ***: *1ccccc1
38: [10:54:10] ***: C1=CC=CC=C1
38: [10:54:10] ***: C1=CC=CC=C1
38: [10:54:10] ***: *1=CC=CC=C1
38: [10:54:10] ***: *1=CC=CC=C1
38: [10:54:10] ***: *1*cccc1
38: [10:54:10] ***: *1*cccc1
38: [10:54:10] ***: *1**ccc1
38: [10:54:10] ***: *1**ccc1
38: [10:54:10] ***: c1ccc[se]1
38: [10:54:10] ***: c1ccc[se]1
38: [10:54:10] ***: c1ccc[te]1
38: [10:54:10] ***: c1ccc[te]1
38: [10:54:10] ***: C0CC0
38: [10:54:10] ***: C0CC0
38: [10:54:10] ***: C/C(/C=C2\Sc1ccc(cc1N\2C))=C5\SC4=NccN4C\5=O
38: [10:54:10] ***: C/C(/C=C2\Sc1ccc(cc1N\2C))=C5\SC4=NccN4C\5=O
38: [10:54:10] ***: [HH]
38: [10:54:10] ***: [HH]
38: [10:54:10] ***: [2HH]
38: [10:54:10] ***: [2HH]
38: [10:54:10] ***: [HH2-]
38: [10:54:10] ***: [HH2-]
38: [10:54:10] ***: [2HH2-]
38: [10:54:10] ***: [2HH2-]
38: [10:54:10] ***: b1ccccc1
38: [10:54:10] ***: b1ccccc1
38: [10:54:10] ***: C[Rf]C
38: [10:54:10] ***: C[Rf]C
38: [10:54:10] ***: [C:1]
38: [10:54:10] ***: [C:1]
38: [10:54:10] ***: [C:0]
38: [10:54:10] ***: [C:0]
38: [10:54:10] ***: [si]1cccc[si]1
38: [10:54:10] ***: [si]1cccc[si]1
38: [10:54:10] ***: [asH]1cccc1
38: [10:54:10] ***: [asH]1cccc1
38: [10:54:10] ***: [Db][Sg][Bh][Hs][Mt][Ds][Rg][Cn][Nh][Fl][Mc][Lv][Ts][Og]
38: [10:54:10] ***: [Db][Sg][Bh][Hs][Mt][Ds][Rg][Cn][Nh][Fl][Mc][Lv][Ts][Og]
38: [10:54:10] ***: [Uun][Uuu][Uub][Uut][Uuq][Uup][Uuh][Uus][Uuo]
38: [10:54:10] ***: [Uun][Uuu][Uub][Uut][Uuq][Uup][Uuh][Uus][Uuo]
38: [10:54:10] ***: ['Db']['Sg']['Bh']['Hs']['Mt']['Ds']['Rg']['Cn']['Nh']['Fl']['Mc']['Lv']['Ts']['Og']
38: [10:54:10] ***: ['Db']['Sg']['Bh']['Hs']['Mt']['Ds']['Rg']['Cn']['Nh']['Fl']['Mc']['Lv']['Ts']['Og']
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing molecules which should fail to parse/sanitize.
38: [10:54:10] Testing molecules which should fail to parse/sanitize.
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing details
38: [10:54:10] Testing details
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing smiles that were previously problems
38: [10:54:10] Testing smiles that were previously problems
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing basic SMILES canonicalization
38: [10:54:10] Testing basic SMILES canonicalization
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 127 (chiral smiles with fused rings)
38: [10:54:10] Testing Issue 127 (chiral smiles with fused rings)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 143 (removing chiral tags for non-chiral centers)
38: [10:54:10] Testing Issue 143 (removing chiral tags for non-chiral centers)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 151 (Chiral centers in rings with hydrogen on them not handled correctly)
38: [10:54:10] Testing Issue 151 (Chiral centers in rings with hydrogen on them not handled correctly)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 153 (Incorrect order of ring-closure bonds from SMILES)
38: [10:54:10] Testing Issue 153 (Incorrect order of ring-closure bonds from SMILES)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 175 (cis/trans wrong on ring closures)
38: [10:54:10] Testing Issue 175 (cis/trans wrong on ring closures)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 176 (problems with 'mol BOND ring_number')
38: [10:54:10] Testing Issue 176 (problems with 'mol BOND ring_number')
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 180: Z/E problems
38: [10:54:10] Testing Issue 180: Z/E problems
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 159 (cis/trans wrong in some branched systems)
38: [10:54:10] Testing Issue 159 (cis/trans wrong in some branched systems)
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 184: Cis/Trans incorrect on ring-closure bonds
38: [10:54:10] Testing Issue 184: Cis/Trans incorrect on ring-closure bonds
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 185: Cis/Trans incorrect on writing branches
38: [10:54:10] Testing Issue 185: Cis/Trans incorrect on writing branches
38: [10:54:10] C(\C)=N\O
38: [10:54:10] C(\C)=N\O
38: [10:54:10] CC(/C=P/N)=N\O
38: [10:54:10] CC(/C=P/N)=N\O
38: [10:54:10] N/P=C/C(C)=N/O
38: [10:54:10] N/P=C/C(C)=N/O
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 191: Bad bond directions in a branch
38: [10:54:10] Testing Issue 191: Bad bond directions in a branch
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 256: SMILES yields incorrect structure
38: [10:54:10] Testing Issue 256: SMILES yields incorrect structure
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 266: kekulized SMILES output
38: [10:54:10] Testing Issue 266: kekulized SMILES output
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing rootedAtAtom functionality
38: [10:54:10] Testing rootedAtAtom functionality
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing isotope handling
38: [10:54:10] Testing isotope handling
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1670149
38: [10:54:10] Testing SF.net bug 1670149
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1842174: bad bond dirs in branches
38: [10:54:10] Testing SF.net bug 1842174: bad bond dirs in branches
38: [10:54:10] F/C=N/Cl
38: [10:54:10] F/C=N/Cl
38: [10:54:10] C(\F)=N/Cl
38: [10:54:10] C(\F)=N/Cl
38: [10:54:10] F/C=C/C=C(/Cl)Br
38: [10:54:10] F/C=C/C=C(/Cl)Br
38: [10:54:10] C(/C=C/F)=C(\Cl)Br
38: [10:54:10] C(/C=C/F)=C(\Cl)Br
38: [10:54:10] O=NC1=NOC(=N\O)/C1=N\O
38: [10:54:10] O=NC1=NOC(=N\O)/C1=N\O
38: [10:54:10] O/N=C1\COC\C1=N\O
38: [10:54:10] O/N=C1\COC\C1=N\O
38: [10:54:10] O/N=C1\COC\[N+]1=N\O
38: [10:54:10] O/N=C1\COC\[N+]1=N\O
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1844959: bad handling of Hs in chiral smiles
38: [10:54:10] Testing SF.net bug 1844959: bad handling of Hs in chiral smiles
38: [10:54:10] --------------------------------------------
38: [10:54:10] --------------------------------------------
38: [10:54:10] C[C@H]1CNOC1
38: [10:54:10] C[C@H]1CNOC1
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Issue 157 (Symmetric molecules with multiple chiral centers badly canonicalized)
38: [10:54:10] Testing Issue 157 (Symmetric molecules with multiple chiral centers badly canonicalized)
38: [10:54:10] -**-**---------------------------------------
38: [10:54:10] -**-**---------------------------------------
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] C1N[C@@H]2CC1CO2
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing handling of stereochemical smiles
38: [10:54:10] Testing handling of stereochemical smiles
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing sf.net bug 1942220
38: [10:54:10] Testing sf.net bug 1942220
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -----------------------
38: [10:54:10] -----------------------
38:  Testing sf.net issue 3127883 (kekulization failing) 
38:  Testing sf.net issue 3127883 (kekulization failing) 
38: [10:54:10] Finished
38: [10:54:10] Finished
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] test adding atom-map information
38: [10:54:10] test adding atom-map information
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3145697 repeated ring labels in disconnected structures
38: [10:54:10] Issue 3145697 repeated ring labels in disconnected structures
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1.C11.C'
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1.C11.C'
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC'
38: [10:54:10] SMILES Parse Error: unclosed ring for input: 'C1C.CC11CCC'
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3152751 cannot roundtrip charged aromatic Se and Te
38: [10:54:10] Issue 3152751 cannot roundtrip charged aromatic Se and Te
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing use of replacement patterns in input
38: [10:54:10] Testing use of replacement patterns in input
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing forcing explicit bonds in the output SMILES
38: [10:54:10] Testing forcing explicit bonds in the output SMILES
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3139534: stereochemistry in larger rings
38: [10:54:10] Issue 3139534: stereochemistry in larger rings
38: [10:54:10] smiles: C1=C\COCCCCC/1
38: [10:54:10] smiles: C1=C\COCCCCC/1
38: [10:54:10] smiles: C1=C/CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C/CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C\CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C\CCCCCC/C=C/1
38: [10:54:10] smiles: C1=C/CCCOC/C=C/1
38: [10:54:10] smiles: C1=C/CCCOC/C=C/1
38: [10:54:10] smiles: C1=C/NCCCCC/1
38: [10:54:10] smiles: C1=C/NCCCCC/1
38: [10:54:10] smiles: C1CCCCN/C=C/1
38: [10:54:10] smiles: C1CCCCN/C=C/1
38: [10:54:10] smiles: CCC/[N+]1=C/c2ccccc2OC(=O)\C=C/1O
38: [10:54:10] smiles: CCC/[N+]1=C/c2ccccc2OC(=O)\C=C/1O
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3526815: canonical smiles failure in many symmetric fragments
38: [10:54:10] Issue 3526815: canonical smiles failure in many symmetric fragments
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3525799: bad smiles for r groups
38: [10:54:10] Issue 3525799: bad smiles for r groups
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3526810: canonical smiles failure in symmetric heterocycles
38: [10:54:10] Issue 3526810: canonical smiles failure in symmetric heterocycles
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 3528556: canonical smiles failure in cycle
38: [10:54:10] Issue 3528556: canonical smiles failure in cycle
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] do not repeat ring closure digits on the same atom
38: [10:54:10] do not repeat ring closure digits on the same atom
38: --C1CCC2(CC1)CCCCC2CCC1CCCC1
38: --C1CCC2(CC1)CCCCC2CCC1CCCC1
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Issue 257: unrecognized bonds are in SMILES as ?s
38: [10:54:10] Issue 257: unrecognized bonds are in SMILES as ?s
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing handling of ring stereochemistry
38: [10:54:10] Testing handling of ring stereochemistry
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 45: stereochemistry information influencing non-stereo SMILES
38: [10:54:10] Testing Github 45: stereochemistry information influencing non-stereo SMILES
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 206: Problems round-tripping P
38: [10:54:10] Testing Github 206: Problems round-tripping P
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
38: [10:54:10] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
38: [10:54:10] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 389: Add option to SmilesWriter to allow writing of all explicit hydrogens
38: [10:54:10] Testing Github 389: Add option to SmilesWriter to allow writing of all explicit hydrogens
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1719046: explicit Hs in canonical smiles
38: [10:54:10] Testing SF.net bug 1719046: explicit Hs in canonical smiles
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1
38: smi: ClC1CCCCC1Br
38: smi: ClC1CCCCC1Br
38: smi: c1ccccc1
38: smi: c1ccccc1
38: smi: c1ccncc1
38: smi: c1ccncc1
38: smi: c1cc[nH]c1
38: smi: c1cc[nH]c1
38: smi: c1cc[nH]c1
38: smi: c1cc[nH]c1
38: smi: c1cc[pH]c1
38: smi: c1cc[pH]c1
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing SF.net bug 1844617: oscillating chirality in canonical smiles
38: [10:54:10] Testing SF.net bug 1844617: oscillating chirality in canonical smiles
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
38: [10:54:10] 	done
38: [10:54:10] 	done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Fragment Smiles
38: [10:54:10] Testing Fragment Smiles
38: CbC(aC)aC
38: CbC(aC)aC
38: CaC(bC)aC
38: CaC(bC)aC
38: CbC(bC)aC
38: CbC(bC)aC
38: O.C
38: O.C
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing Github 12: non-canonical fragment smiles
38: [10:54:10] Testing Github 12: non-canonical fragment smiles
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] testing smiles writing/canonicalization for modified molecules.
38: [10:54:10] testing smiles writing/canonicalization for modified molecules.
38: [10:54:10] testing github issue 532: _smilesAtomOutputOrder incorrect for dot disconnected molecules
38: [10:54:10] testing github issue 532: _smilesAtomOutputOrder incorrect for dot disconnected molecules
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] testing github issue 786: chiral order for ring closure after branch
38: [10:54:10] testing github issue 786: chiral order for ring closure after branch
38: C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O
38: C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O C=C1CC[C@@H]2O[C@@]2(C)CC[C@@](N)(C(C)C)C=C[C@](C)(O)CC[C@@H]1O
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] testing github issue 760: reversed stereochemistry with sulfoxides and ring closures
38: [10:54:10] testing github issue 760: reversed stereochemistry with sulfoxides and ring closures
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] testing dative bond support
38: [10:54:10] testing dative bond support
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] Stereochemistry not output to SMILES when allHsExplicit=True
38: [10:54:10] Stereochemistry not output to SMILES when allHsExplicit=True
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] Testing the SmilesParseParams class
38: [10:54:10] Testing the SmilesParseParams class
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'CCCC the_name'
38: [10:54:10] done
38: [10:54:10] done
38: [10:54:10] -------------------------------------
38: [10:54:10] -------------------------------------
38: [10:54:10] Testing the %(....) notation for SMILES ring closure numbers
38: [10:54:10] Testing the %(....) notation for SMILES ring closure numbers
38: 
38: 
38: [10:54:10] Test: c1ccccc1 (should be read)
38: [10:54:10] Test: c1ccccc1 (should be read)
38: [10:54:10] Test: c%(1)ccccc%(1) (should be read)
38: [10:54:10] Test: c%(1)ccccc%(1) (should be read)
38: [10:54:10] Test: c%(12)ccccc%(12) (should be read)
38: [10:54:10] Test: c%(12)ccccc%(12) (should be read)
38: [10:54:10] Test: c%(123)ccccc%(123) (should be read)
38: [10:54:10] Test: c%(123)ccccc%(123) (should be read)
38: [10:54:10] Test: c%(1234)ccccc%(1234) (should be read)
38: [10:54:10] Test: c%(1234)ccccc%(1234) (should be read)
38: [10:54:10] Test: c%(99999)ccccc%(99999) (should be read)
38: [10:54:10] Test: c%(99999)ccccc%(99999) (should be read)
38: [10:54:10] Test: c%()ccccc%() (should NOT be read)
38: [10:54:10] Test: c%()ccccc%() (should NOT be read)
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%()ccccc%()'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%()ccccc%()'
38: [10:54:10] Test: c%(100000)ccccc%(100000) (should NOT be read)
38: [10:54:10] Test: c%(100000)ccccc%(100000) (should NOT be read)
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%(100000)ccccc%(100000)'
38: [10:54:10] SMILES Parse Error: syntax error for input: 'c%(100000)ccccc%(100000)'
38: [10:54:10] done
38: [10:54:10] done
 38/130 Test  #38: smiTest1 ...........................   Passed    0.17 sec
 38/130 Test  #38: smiTest1 ...........................   Passed    0.17 sec
test 39
test 39
        Start  39: cxsmilesTest
        Start  39: cxsmilesTest
39: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmilesTest
39: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/cxsmilesTest
39: Test timeout computed to be: 9.99988e+06
39: Test timeout computed to be: 9.99988e+06
39: [10:54:10] testing base functionality
39: [10:54:10] testing base functionality
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing reading 2D coordinates
39: [10:54:10] testing reading 2D coordinates
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing reading Atom Labels
39: [10:54:10] testing reading Atom Labels
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing CSXMILES and mol name
39: [10:54:10] testing CSXMILES and mol name
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing coordinate bonds
39: [10:54:10] testing coordinate bonds
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing radicals
39: [10:54:10] testing radicals
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing atom values
39: [10:54:10] testing atom values
39: [10:54:10] done
39: [10:54:10] done
39: [10:54:10] testing atom properties
39: [10:54:10] testing atom properties
39: [10:54:10] done
39: [10:54:10] done
 39/130 Test  #39: cxsmilesTest .......................   Passed    0.01 sec
 39/130 Test  #39: cxsmilesTest .......................   Passed    0.01 sec
test 40
test 40
        Start  40: smaTest1
        Start  40: smaTest1
40: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smaTest1
40: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SmilesParse/smaTest1
40: Test timeout computed to be: 9.99988e+06
40: Test timeout computed to be: 9.99988e+06
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing patterns which should parse.
40: [10:54:10] Testing patterns which should parse.
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing patterns which should fail to parse.
40: [10:54:10] Testing patterns which should fail to parse.
40: [10:54:10] 	Expect Parse error messages
40: [10:54:10] 	Expect Parse error messages
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching
40: [10:54:10] Testing matching
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching2
40: [10:54:10] Testing matching2
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching3
40: [10:54:10] Testing matching3
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching4
40: [10:54:10] Testing matching4
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching 5
40: [10:54:10] Testing matching 5
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing matching 6
40: [10:54:10] Testing matching 6
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Smarts Writer.
40: [10:54:10] Testing Smarts Writer.
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing fragment patterns.
40: [10:54:10] Testing fragment patterns.
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing former problems
40: [10:54:10] Testing former problems
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 196: Smarts handling of 'aa' incorrect
40: [10:54:10] Testing Issue 196: Smarts handling of 'aa' incorrect
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 254: Bad handling of unspecified bonds in SMARTS
40: [10:54:10] Testing Issue 254: Bad handling of unspecified bonds in SMARTS
40: [10:54:10] 	done
40: [10:54:10] 	done
40: [10:54:10] -------------------------------------
40: [10:54:10] -------------------------------------
40: [10:54:10] Testing Issue 255: Core leaks in smarts parsing.  Watch memory consumption.
40: [10:54:10] Testing Issue 255: Core leaks in smarts parsing.  Watch memory consumption.
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 330: problems writing some recursive smarts.
40: [10:54:11] Testing Issue 330: problems writing some recursive smarts.
40: [10:54:11] sma: [$(C=O)]
40: [10:54:11] sma: [$(C=O)]
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 351:
40: [10:54:11] Testing Issue 351:
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing atom map assignment:
40: [10:54:11] Testing atom map assignment:
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10H3]CC'
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10H3]CC'
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10:3]ON'
40: [10:54:11] SMARTS Parse Error: syntax error for input: '[C:10:3]ON'
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing cleaner SMARTS -> SMILES 
40: [10:54:11] Testing cleaner SMARTS -> SMILES 
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing SMILES -> SMARTS
40: [10:54:11] Testing SMILES -> SMARTS
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 1914154: problems with generating smarts for recursive queries
40: [10:54:11] Testing Issue 1914154: problems with generating smarts for recursive queries
40: [10:54:11] [$(C)&$(O)]
40: [10:54:11] [$(C)&$(O)]
40: [10:54:11] [$(C),$(O)]
40: [10:54:11] [$(C),$(O)]
40: [10:54:11] [!$(C)&$(O)]
40: [10:54:11] [!$(C)&$(O)]
40: [10:54:11] [C&$(C-O)&$(C=O)]
40: [10:54:11] [C&$(C-O)&$(C=O)]
40: [10:54:11] [$(C=O),$(C-O);$(C-N)]
40: [10:54:11] [$(C=O),$(C-O);$(C-N)]
40: [10:54:11] [$(C-N);$(C=O),$(C-O)]
40: [10:54:11] [$(C-N);$(C=O),$(C-O)]
40: [10:54:11] [$(C-N)&$(C=O),$(C-O)]
40: [10:54:11] [$(C-N)&$(C=O),$(C-O)]
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing miscellaneous bits of SMARTS writing
40: [10:54:11] Testing miscellaneous bits of SMARTS writing
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing issue 1804420, missing assignment of atoms maps
40: [10:54:11] Testing issue 1804420, missing assignment of atoms maps
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing handling (or lack thereof) of stereochem in smarts (sf.net issue 2738320)
40: [10:54:11] Testing handling (or lack thereof) of stereochem in smarts (sf.net issue 2738320)
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 2884178 part1: SubstructMatch not returning correct number of matches
40: [10:54:11] Testing Issue 2884178 part1: SubstructMatch not returning correct number of matches
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 2884178 part2: SubstructMatch not returning correct number of matches
40: [10:54:11] Testing Issue 2884178 part2: SubstructMatch not returning correct number of matches
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Issue 3000399: incorrect behavior of X queries
40: [10:54:11] Testing Issue 3000399: incorrect behavior of X queries
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing serial numbers in recursive SMARTS queries
40: [10:54:11] Testing serial numbers in recursive SMARTS queries
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing use of replacement patterns in input
40: [10:54:11] Testing use of replacement patterns in input
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing github #313: problems with 'h' in SMARTS
40: [10:54:11] Testing github #313: problems with 'h' in SMARTS
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing github #314: problems with 'x' in SMARTS
40: [10:54:11] Testing github #314: problems with 'x' in SMARTS
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
40: [10:54:11] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
40: [10:54:11] done
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 544: merging query Hs failing on recursive SMARTS
40: [10:54:11] Testing Github 544: merging query Hs failing on recursive SMARTS
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] WARNING: merging explicit H queries involved in ORs is not supported. This query will not be merged
40: [10:54:11] done
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 766: AnyBond specification treated as single when joining rings in SMARTS
40: [10:54:11] Testing Github 766: AnyBond specification treated as single when joining rings in SMARTS
40: [10:54:11] done
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 893: invalid handling of negation of aromaticity when writing SMARTS
40: [10:54:11] Testing Github 893: invalid handling of negation of aromaticity when writing SMARTS
40: [10:54:11] done
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Transuranic matching
40: [10:54:11] Testing Transuranic matching
40: [10:54:11] 	done
40: [10:54:11] 	done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 1338: SMARTS proton query parsed incorrectly
40: [10:54:11] Testing Github 1338: SMARTS proton query parsed incorrectly
40: [10:54:11] done
40: [10:54:11] done
40: [10:54:11] -------------------------------------
40: [10:54:11] -------------------------------------
40: [10:54:11] Testing Github 1472: MolToSmarts does not include atom map info for molecules built from SMILES
40: [10:54:11] Testing Github 1472: MolToSmarts does not include atom map info for molecules built from SMILES
40: [10:54:11] done
40: [10:54:11] done
 40/130 Test  #40: smaTest1 ...........................   Passed    0.80 sec
 40/130 Test  #40: smaTest1 ...........................   Passed    0.80 sec
test 41
test 41
        Start  41: fileParsersTest1
        Start  41: fileParsersTest1
41: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/fileParsersTest1
41: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/fileParsersTest1
41: Test timeout computed to be: 9.99988e+06
41: Test timeout computed to be: 9.99988e+06
41: [10:54:11]  ---- Running with POSIX locale ----- 
41: [10:54:11]  ---- Running with POSIX locale ----- 
41: [10:54:11] testing atom query parsing
41: [10:54:11] testing atom query parsing
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing bond query parsing
41: [10:54:11] testing bond query parsing
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11]  ----------> Test4 
41: [10:54:11]  ----------> Test4 
41: [10:54:11]  Finished <---------- 
41: [10:54:11]  Finished <---------- 
41: [10:54:11]  ----------> Test5 
41: [10:54:11]  ----------> Test5 
41: [10:54:11] testing chirality parsing
41: [10:54:11] testing chirality parsing
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing Issue145:
41: [10:54:11] testing Issue145:
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing Issue148:
41: [10:54:11] testing Issue148:
41:  Mol files containing mis-drawn nitro groups not properly parsed
41:  Mol files containing mis-drawn nitro groups not properly parsed
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing roundtrip chirality parsing
41: [10:54:11] testing roundtrip chirality parsing
41: [10:54:11] SMI: O[C@H](S)I
41: [10:54:11] SMI: O[C@H](S)I
41: ***************************************
41: ***************************************
41: ***************************************
41: ***************************************
41: [10:54:11] Issue142d.mol
41: [10:54:11] Issue142d.mol
41:      RDKit          3D
41:      RDKit          3D
41: 
41: 
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:   2  1  1  1
41:   2  1  1  1
41:   3  2  1  0
41:   3  2  1  0
41:   2  4  1  0
41:   2  4  1  0
41: M  END
41: M  END
41: 
41: 
41: [10:54:11] 9 9
41: [10:54:11] 9 9
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing reading without sanitization
41: [10:54:11] testing reading without sanitization
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing Issue180: bad Z/E assignments
41: [10:54:11] testing Issue180: bad Z/E assignments
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing Issue264: bad stereochemistry from mol files
41: [10:54:11] testing Issue264: bad stereochemistry from mol files
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:11] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing Issue399: bond wedging cleanup
41: [10:54:11] testing Issue399: bond wedging cleanup
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of charge lines
41: [10:54:11] testing handling of charge lines
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing basic double bond stereochemistry
41: [10:54:11] testing basic double bond stereochemistry
41: [10:54:11]   sub-test for issue 3099836
41: [10:54:11]   sub-test for issue 3099836
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing double bonds with symmetric substituents
41: [10:54:11] testing double bonds with symmetric substituents
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing double bonds in rings with stereochem specifications
41: [10:54:11] testing double bonds in rings with stereochem specifications
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing mol file R-group parsing
41: [10:54:11] testing mol file R-group parsing
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing mol file degree queries
41: [10:54:11] testing mol file degree queries
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing mol file ring-bond count queries
41: [10:54:11] testing mol file ring-bond count queries
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing mol file unsaturation queries
41: [10:54:11] testing mol file unsaturation queries
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing mol file queries -> SMARTS 
41: [10:54:11] testing mol file queries -> SMARTS 
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of missing files
41: [10:54:11] testing handling of missing files
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:11] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of radicals 
41: [10:54:11] testing handling of radicals 
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of bogus bond orders (issue 2337369)
41: [10:54:11] testing handling of bogus bond orders (issue 2337369)
41: [10:54:11] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:11] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:11] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:11] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of atom stereo parity flags
41: [10:54:11] testing handling of atom stereo parity flags
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11]  Testing issue 2692246 
41: [10:54:11]  Testing issue 2692246 
41: [10:54:11]  done
41: [10:54:11]  done
41: [10:54:11]  Testing mol blocks without kekulization 
41: [10:54:11]  Testing mol blocks without kekulization 
41: [10:54:11]  done
41: [10:54:11]  done
41: [10:54:11] testing atom values in mol files
41: [10:54:11] testing atom values in mol files
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of A, Q, and * in mol files
41: [10:54:11] testing handling of A, Q, and * in mol files
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing handling of mol files with atom lists and values
41: [10:54:11] testing handling of mol files with atom lists and values
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11] testing basic handling of v3000 mol files
41: [10:54:11] testing basic handling of v3000 mol files
41: [10:54:11] skipping block at line 25: BEGIN COLLECTION
41: [10:54:11] skipping block at line 25: BEGIN COLLECTION
41: [10:54:11] done
41: [10:54:11] done
41: [10:54:11]  Testing issue 2963522 
41: [10:54:11]  Testing issue 2963522 
41: [10:54:11]  done
41: [10:54:11]  done
41: [10:54:11]  Testing issue 3073163 
41: [10:54:11]  Testing issue 3073163 
41: [10:54:11]  done
41: [10:54:11]  done
41: [10:54:11]  Testing Issue3154208 (a large mol failure)
41: [10:54:11]  Testing Issue3154208 (a large mol failure)
41: generating smiles
41: generating smiles
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: converting back
41: converting back
41: check isomorphism
41: check isomorphism
41: [10:54:11] Large molecule canonical smiles test
41: [10:54:11] Large molecule canonical smiles test
41: [10:54:11] Iteration: 1 of 50
41: [10:54:11] Iteration: 1 of 50
41: [10:54:11] Iteration: 11 of 50
41: [10:54:11] Iteration: 11 of 50
41: [10:54:12] Iteration: 21 of 50
41: [10:54:12] Iteration: 21 of 50
41: [10:54:12] Iteration: 31 of 50
41: [10:54:12] Iteration: 31 of 50
41: [10:54:12] Iteration: 41 of 50
41: [10:54:12] Iteration: 41 of 50
41: [10:54:13]  done
41: [10:54:13]  done
41: [10:54:13] -------------------------------------
41: [10:54:13] -------------------------------------
41: [10:54:13] Issue 3228150: round-trip stereochemistry failure
41: [10:54:13] Issue 3228150: round-trip stereochemistry failure
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing writing mol file R-groups (issue 3313540)
41: [10:54:13] testing writing mol file R-groups (issue 3313540)
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13]  ----------> Test issue 3359739 
41: [10:54:13]  ----------> Test issue 3359739 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3374639 
41: [10:54:13]  ----------> Test issue 3374639 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test three-coordinate chirality 
41: [10:54:13]  ----------> Test three-coordinate chirality 
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3375647 
41: [10:54:13]  ----------> Test issue 3375647 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3375684 
41: [10:54:13]  ----------> Test issue 3375684 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test handling of chiral phosphorous 
41: [10:54:13]  ----------> Test handling of chiral phosphorous 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3392107 
41: [10:54:13]  ----------> Test issue 3392107 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3432136 
41: [10:54:13]  ----------> Test issue 3432136 
41: [10:54:13]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:13]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:13]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:13]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:13]  S group SUP ignored on line 35.
41: [10:54:13]  S group SUP ignored on line 35.
41: [10:54:13]  S group SUP ignored on line 28
41: [10:54:13]  S group SUP ignored on line 28
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3477283 
41: [10:54:13]  ----------> Test issue 3477283 
41: [10:54:13]  deprecated group abbreviation ignored on line 24
41: [10:54:13]  deprecated group abbreviation ignored on line 24
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3484552 
41: [10:54:13]  ----------> Test issue 3484552 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  ----------> Test issue 3514824 
41: [10:54:13]  ----------> Test issue 3514824 
41: [10:54:13]  Finished <---------- 
41: [10:54:13]  Finished <---------- 
41: [10:54:13] -------------------------------------
41: [10:54:13] -------------------------------------
41: [10:54:13] Issue 3525799: bad smiles for r groups
41: [10:54:13] Issue 3525799: bad smiles for r groups
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] -------------------------------------
41: [10:54:13] Testing skip lines in CTABs
41: [10:54:13] Testing skip lines in CTABs
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] -------------------------------------
41: [10:54:13] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:13] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:13] 
41: [10:54:13] 
41: 
41: 
41: ****
41: ****
41: Post-condition Violation
41: Post-condition Violation
41: Element 'Mv' not found
41: Element 'Mv' not found
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Failed Expression: anum > -1
41: Failed Expression: anum > -1
41: ****
41: ****
41: 
41: 
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing handling of chiral flags
41: [10:54:13] testing handling of chiral flags
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing handling of mol file valence flags
41: [10:54:13] testing handling of mol file valence flags
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:13] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:13] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing impact of Hs in mol files on stereochemistry
41: [10:54:13] testing impact of Hs in mol files on stereochemistry
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing reading reactions in mol files
41: [10:54:13] testing reading reactions in mol files
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:13] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing ZBO parsing
41: [10:54:13] testing ZBO parsing
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing Github 164: problems with Xe from mol files
41: [10:54:13] testing Github 164: problems with Xe from mol files
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing github issue 194: bad bond types from pdb
41: [10:54:13] testing github issue 194: bad bond types from pdb
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing github issue 196: left justitified bond topology
41: [10:54:13] testing github issue 196: left justitified bond topology
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] -------------------------------------
41: [10:54:13] -------------------------------------
41: [10:54:13] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:13] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:13] done
41: [10:54:13] done
41: [10:54:13] testing basic writing of v3000 mol files
41: [10:54:13] testing basic writing of v3000 mol files
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] testing more queries from v3000 mol files
41: [10:54:14] testing more queries from v3000 mol files
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] -----------------------
41: [10:54:14] -----------------------
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:14] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] testing splitting on PDB residues
41: [10:54:14] testing splitting on PDB residues
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:14] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:14] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:14] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing Github 188: Bad E/Z assignment from CTAB
41: [10:54:14] Testing Github 188: Bad E/Z assignment from CTAB
41: ----------------------------------
41: ----------------------------------
41: ----------------------------------
41: ----------------------------------
41: [10:54:14] Finished
41: [10:54:14] Finished
41: [10:54:14] -------------------------------------
41: [10:54:14] -------------------------------------
41: [10:54:14] Testing right-aligned elements in RCSB SDF files
41: [10:54:14] Testing right-aligned elements in RCSB SDF files
41: [10:54:14] 
41: [10:54:14] 
41: 
41: 
41: ****
41: ****
41: Pre-condition Violation
41: Pre-condition Violation
41: rlabel out of range for MDL files
41: rlabel out of range for MDL files
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: ****
41: ****
41: 
41: 
41: [10:54:14] GetSSSR interrupted by segmentation fault
41: [10:54:14] GetSSSR interrupted by segmentation fault
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:14] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:14] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:14] done
41: [10:54:14] done
41: [10:54:14] testing reading pdb files
41: [10:54:14] testing reading pdb files
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing reading sequences
41: [10:54:16] testing reading sequences
41: [10:54:16] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:16] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:16] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:16] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:16] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16]  ---- Running with German locale ----- 
41: [10:54:16]  ---- Running with German locale ----- 
41: de_DE.UTF-8
41: de_DE.UTF-8
41: [10:54:16] -------------------------------------
41: [10:54:16] -------------------------------------
41: [10:54:16]     Test multithreading Locale Switching
41: [10:54:16]     Test multithreading Locale Switching
41: [10:54:16]     Test multithreading (Done)
41: [10:54:16]     Test multithreading (Done)
41: [10:54:16] -------------------------------------
41: [10:54:16] -------------------------------------
41: [10:54:16] testing atom query parsing
41: [10:54:16] testing atom query parsing
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing bond query parsing
41: [10:54:16] testing bond query parsing
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16]  ----------> Test4 
41: [10:54:16]  ----------> Test4 
41: [10:54:16]  Finished <---------- 
41: [10:54:16]  Finished <---------- 
41: [10:54:16]  ----------> Test5 
41: [10:54:16]  ----------> Test5 
41: [10:54:16] testing chirality parsing
41: [10:54:16] testing chirality parsing
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing Issue145:
41: [10:54:16] testing Issue145:
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41:  Mol parsing: molecule yields non-canonical smiles from mol block
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing Issue148:
41: [10:54:16] testing Issue148:
41:  Mol files containing mis-drawn nitro groups not properly parsed
41:  Mol files containing mis-drawn nitro groups not properly parsed
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing roundtrip chirality parsing
41: [10:54:16] testing roundtrip chirality parsing
41: [10:54:16] SMI: O[C@H](S)I
41: [10:54:16] SMI: O[C@H](S)I
41: ***************************************
41: ***************************************
41: ***************************************
41: ***************************************
41: [10:54:16] Issue142d.mol
41: [10:54:16] Issue142d.mol
41:      RDKit          3D
41:      RDKit          3D
41: 
41: 
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:   4  3  0  0  0  0  0  0  0  0999 V2000
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
41:   2  1  1  1
41:   2  1  1  1
41:   3  2  1  0
41:   3  2  1  0
41:   2  4  1  0
41:   2  4  1  0
41: M  END
41: M  END
41: 
41: 
41: [10:54:16] 9 9
41: [10:54:16] 9 9
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing reading without sanitization
41: [10:54:16] testing reading without sanitization
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing Issue180: bad Z/E assignments
41: [10:54:16] testing Issue180: bad Z/E assignments
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing Issue264: bad stereochemistry from mol files
41: [10:54:16] testing Issue264: bad stereochemistry from mol files
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:16] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing Issue399: bond wedging cleanup
41: [10:54:16] testing Issue399: bond wedging cleanup
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of charge lines
41: [10:54:16] testing handling of charge lines
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing basic double bond stereochemistry
41: [10:54:16] testing basic double bond stereochemistry
41: [10:54:16]   sub-test for issue 3099836
41: [10:54:16]   sub-test for issue 3099836
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing double bonds with symmetric substituents
41: [10:54:16] testing double bonds with symmetric substituents
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing double bonds in rings with stereochem specifications
41: [10:54:16] testing double bonds in rings with stereochem specifications
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing mol file R-group parsing
41: [10:54:16] testing mol file R-group parsing
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing mol file degree queries
41: [10:54:16] testing mol file degree queries
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing mol file ring-bond count queries
41: [10:54:16] testing mol file ring-bond count queries
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing mol file unsaturation queries
41: [10:54:16] testing mol file unsaturation queries
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing mol file queries -> SMARTS 
41: [10:54:16] testing mol file queries -> SMARTS 
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of missing files
41: [10:54:16] testing handling of missing files
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:16] testing issue Issue1965035: problems with WedgeMolBonds 
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of radicals 
41: [10:54:16] testing handling of radicals 
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of bogus bond orders (issue 2337369)
41: [10:54:16] testing handling of bogus bond orders (issue 2337369)
41: [10:54:16] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:16] bond with order 0 found on line 7. This is not part of the MDL specification.
41: [10:54:16] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:16] unrecognized query bond type, 9, found on line 7. Using an "any" query.
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of atom stereo parity flags
41: [10:54:16] testing handling of atom stereo parity flags
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16]  Testing issue 2692246 
41: [10:54:16]  Testing issue 2692246 
41: [10:54:16]  done
41: [10:54:16]  done
41: [10:54:16]  Testing mol blocks without kekulization 
41: [10:54:16]  Testing mol blocks without kekulization 
41: [10:54:16]  done
41: [10:54:16]  done
41: [10:54:16] testing atom values in mol files
41: [10:54:16] testing atom values in mol files
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of A, Q, and * in mol files
41: [10:54:16] testing handling of A, Q, and * in mol files
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing handling of mol files with atom lists and values
41: [10:54:16] testing handling of mol files with atom lists and values
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16] testing basic handling of v3000 mol files
41: [10:54:16] testing basic handling of v3000 mol files
41: [10:54:16] skipping block at line 25: BEGIN COLLECTION
41: [10:54:16] skipping block at line 25: BEGIN COLLECTION
41: [10:54:16] done
41: [10:54:16] done
41: [10:54:16]  Testing issue 2963522 
41: [10:54:16]  Testing issue 2963522 
41: [10:54:16]  done
41: [10:54:16]  done
41: [10:54:16]  Testing issue 3073163 
41: [10:54:16]  Testing issue 3073163 
41: [10:54:16]  done
41: [10:54:16]  done
41: [10:54:16]  Testing Issue3154208 (a large mol failure)
41: [10:54:16]  Testing Issue3154208 (a large mol failure)
41: generating smiles
41: generating smiles
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
41: converting back
41: converting back
41: check isomorphism
41: check isomorphism
41: [10:54:16] Large molecule canonical smiles test
41: [10:54:16] Large molecule canonical smiles test
41: [10:54:16] Iteration: 1 of 50
41: [10:54:16] Iteration: 1 of 50
41: [10:54:16] Iteration: 11 of 50
41: [10:54:16] Iteration: 11 of 50
41: [10:54:17] Iteration: 21 of 50
41: [10:54:17] Iteration: 21 of 50
41: [10:54:17] Iteration: 31 of 50
41: [10:54:17] Iteration: 31 of 50
41: [10:54:18] Iteration: 41 of 50
41: [10:54:18] Iteration: 41 of 50
41: [10:54:18]  done
41: [10:54:18]  done
41: [10:54:18] -------------------------------------
41: [10:54:18] -------------------------------------
41: [10:54:18] Issue 3228150: round-trip stereochemistry failure
41: [10:54:18] Issue 3228150: round-trip stereochemistry failure
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1/CC/C(=N/C)O1
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing writing mol file R-groups (issue 3313540)
41: [10:54:18] testing writing mol file R-groups (issue 3313540)
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18]  ----------> Test issue 3359739 
41: [10:54:18]  ----------> Test issue 3359739 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3374639 
41: [10:54:18]  ----------> Test issue 3374639 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test three-coordinate chirality 
41: [10:54:18]  ----------> Test three-coordinate chirality 
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18] Warning: conflicting stereochemistry at atom 1 ignored.
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3375647 
41: [10:54:18]  ----------> Test issue 3375647 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3375684 
41: [10:54:18]  ----------> Test issue 3375684 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test handling of chiral phosphorous 
41: [10:54:18]  ----------> Test handling of chiral phosphorous 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3392107 
41: [10:54:18]  ----------> Test issue 3392107 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3432136 
41: [10:54:18]  ----------> Test issue 3432136 
41: [10:54:18]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:18]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
41: [10:54:18]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:18]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
41: [10:54:18]  S group SUP ignored on line 35.
41: [10:54:18]  S group SUP ignored on line 35.
41: [10:54:18]  S group SUP ignored on line 28
41: [10:54:18]  S group SUP ignored on line 28
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3477283 
41: [10:54:18]  ----------> Test issue 3477283 
41: [10:54:18]  deprecated group abbreviation ignored on line 24
41: [10:54:18]  deprecated group abbreviation ignored on line 24
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3484552 
41: [10:54:18]  ----------> Test issue 3484552 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  ----------> Test issue 3514824 
41: [10:54:18]  ----------> Test issue 3514824 
41: [10:54:18]  Finished <---------- 
41: [10:54:18]  Finished <---------- 
41: [10:54:18] -------------------------------------
41: [10:54:18] -------------------------------------
41: [10:54:18] Issue 3525799: bad smiles for r groups
41: [10:54:18] Issue 3525799: bad smiles for r groups
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] -------------------------------------
41: [10:54:18] Testing skip lines in CTABs
41: [10:54:18] Testing skip lines in CTABs
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] -------------------------------------
41: [10:54:18] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:18] Bad issue 269: handling of bad atom symbols in CTABs
41: [10:54:18] 
41: [10:54:18] 
41: 
41: 
41: ****
41: ****
41: Post-condition Violation
41: Post-condition Violation
41: Element 'Mv' not found
41: Element 'Mv' not found
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Violation occurred on line 90 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PeriodicTable.h
41: Failed Expression: anum > -1
41: Failed Expression: anum > -1
41: ****
41: ****
41: 
41: 
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing handling of chiral flags
41: [10:54:18] testing handling of chiral flags
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing handling of mol file valence flags
41: [10:54:18] testing handling of mol file valence flags
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:18] testing github issue 88: M  END not being read from V3K ctabs
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:18] testing github issue 82: stereochemistry only perceived if sanitization is done
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing impact of Hs in mol files on stereochemistry
41: [10:54:18] testing impact of Hs in mol files on stereochemistry
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing reading reactions in mol files
41: [10:54:18] testing reading reactions in mol files
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:18] testing Github 166: skipping sanitization on reading pdb files
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing ZBO parsing
41: [10:54:18] testing ZBO parsing
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing Github 164: problems with Xe from mol files
41: [10:54:18] testing Github 164: problems with Xe from mol files
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing github issue 194: bad bond types from pdb
41: [10:54:18] testing github issue 194: bad bond types from pdb
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing github issue 196: left justitified bond topology
41: [10:54:18] testing github issue 196: left justitified bond topology
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] -------------------------------------
41: [10:54:18] -------------------------------------
41: [10:54:18] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:18] Bad issue 3557676: handling of D and T in CTABs
41: [10:54:18] done
41: [10:54:18] done
41: [10:54:18] testing basic writing of v3000 mol files
41: [10:54:18] testing basic writing of v3000 mol files
41: [10:54:19] done
41: [10:54:19] done
41: [10:54:19] testing more queries from v3000 mol files
41: [10:54:19] testing more queries from v3000 mol files
41: [10:54:19] done
41: [10:54:19] done
41: [10:54:19] -----------------------
41: [10:54:19] -----------------------
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
41: [10:54:19] Finished
41: [10:54:19] Finished
41: [10:54:19] -------------------------------------
41: [10:54:19] -------------------------------------
41: [10:54:19] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:19] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
41: [10:54:19] Finished
41: [10:54:19] Finished
41: [10:54:19] testing splitting on PDB residues
41: [10:54:19] testing splitting on PDB residues
41: [10:54:20] done
41: [10:54:20] done
41: [10:54:20] -------------------------------------
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:20] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
41: [10:54:20] Finished
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:20] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
41: [10:54:20] Finished
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:20] Testing Github 741: Support CTABs where the second letter in atom symbols is capitalized
41: [10:54:20] Finished
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing Github 188: Bad E/Z assignment from CTAB
41: [10:54:20] Testing Github 188: Bad E/Z assignment from CTAB
41: ----------------------------------
41: ----------------------------------
41: ----------------------------------
41: ----------------------------------
41: [10:54:20] Finished
41: [10:54:20] Finished
41: [10:54:20] -------------------------------------
41: [10:54:20] -------------------------------------
41: [10:54:20] Testing right-aligned elements in RCSB SDF files
41: [10:54:20] Testing right-aligned elements in RCSB SDF files
41: [10:54:20] 
41: [10:54:20] 
41: 
41: 
41: ****
41: ****
41: Pre-condition Violation
41: Pre-condition Violation
41: rlabel out of range for MDL files
41: rlabel out of range for MDL files
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Violation occurred on line 525 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: Failed Expression: rlabel >= 0 && rlabel < 100
41: ****
41: ****
41: 
41: 
41: [10:54:20] GetSSSR interrupted by segmentation fault
41: [10:54:20] GetSSSR interrupted by segmentation fault
41: [10:54:20] done
41: [10:54:20] done
41: [10:54:20] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:20] Test github 1034: Squiggle bonds from CTABs lost post-parsing
41: [10:54:20] done
41: [10:54:20] done
41: [10:54:20] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:20] Test github 1049: MolOps::cleanUp() being called by CTAB parser even when sanitization isn't on
41: [10:54:20] done
41: [10:54:20] done
41: [10:54:20] testing reading pdb files
41: [10:54:20] testing reading pdb files
41: [10:54:21] done
41: [10:54:21] done
41: [10:54:21] testing reading sequences
41: [10:54:21] testing reading sequences
41: [10:54:21] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:21] Test MDL molfiles with dative bonds (V3000 only)
41: [10:54:21] done
41: [10:54:21] done
41: [10:54:21] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:21] Test github 1251: MolFromMolBlock sanitizing when it should not be
41: [10:54:21] done
41: [10:54:21] done
41: [10:54:21] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:21] Test github 1029: PDB reader fails for arginine explicit hydrogens 
41: [10:54:21] done
41: [10:54:21] done
41: [10:54:21] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:21] Test github 1340: PDB parser creating H-H bonds 
41: [10:54:21] done
41: [10:54:21] done
 41/130 Test  #41: fileParsersTest1 ...................   Passed   10.29 sec
 41/130 Test  #41: fileParsersTest1 ...................   Passed   10.29 sec
test 42
test 42
        Start  42: testMolSupplier
        Start  42: testMolSupplier
42: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier
42: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolSupplier
42: Test timeout computed to be: 9.99988e+06
42: Test timeout computed to be: 9.99988e+06
42: [10:54:21] 
42: [10:54:21] 
42: -----------------------------------------
42: -----------------------------------------
42: [10:54:21] Finished: testMolSup()
42: [10:54:21] Finished: testMolSup()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testRandMolSup()
42: [10:54:21] Finished: testRandMolSup()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSmilesSup()
42: [10:54:21] Finished: testSmilesSup()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] SMILES Parse Error: syntax error for input: 'fail'
42: [10:54:21] SMILES Parse Error: syntax error for input: 'fail'
42: [10:54:21] ERROR: Smiles parse error on line 3
42: [10:54:21] ERROR: Smiles parse error on line 3
42: [10:54:21] ERROR: Cannot create molecule from : 'fail'
42: [10:54:21] ERROR: Cannot create molecule from : 'fail'
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] ------------------------------------------------------
42: [10:54:21] >>> This may result in an infinite loop.  It should finish almost immediately:
42: [10:54:21] >>> This may result in an infinite loop.  It should finish almost immediately:
42: [10:54:21] <<< done.
42: [10:54:21] <<< done.
42: [10:54:21] Finished: testSmilesSupFromText()
42: [10:54:21] Finished: testSmilesSupFromText()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSmilesWriter()
42: [10:54:21] Finished: testSmilesWriter()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] 48
42: [10:54:21] 48
42: [10:54:21] 78
42: [10:54:21] 78
42: [10:54:21] 128
42: [10:54:21] 128
42: [10:54:21] 163
42: [10:54:21] 163
42: [10:54:21] 164
42: [10:54:21] 164
42: [10:54:21] 170
42: [10:54:21] 170
42: [10:54:21] 180
42: [10:54:21] 180
42: [10:54:21] 186
42: [10:54:21] 186
42: [10:54:21] 192
42: [10:54:21] 192
42: [10:54:21] 203
42: [10:54:21] 203
42: [10:54:21] 210
42: [10:54:21] 210
42: [10:54:21] 211
42: [10:54:21] 211
42: [10:54:21] 213
42: [10:54:21] 213
42: [10:54:21] 220
42: [10:54:21] 220
42: [10:54:21] 229
42: [10:54:21] 229
42: [10:54:21] 256
42: [10:54:21] 256
42: [10:54:21] 16
42: [10:54:21] 16
42: [10:54:21] Finished: testSDWriter()
42: [10:54:21] Finished: testSDWriter()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSDSupplierEnding()
42: [10:54:21] Finished: testSDSupplierEnding()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSuppliersEmptyFile()
42: [10:54:21] Finished: testSuppliersEmptyFile()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testCisTrans()
42: [10:54:21] Finished: testCisTrans()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testStereoRound()
42: [10:54:21] Finished: testStereoRound()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue226()
42: [10:54:21] Finished: testIssue226()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier1()
42: [10:54:21] Finished: testTDTSupplier1()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier2()
42: [10:54:21] Finished: testTDTSupplier2()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testTDTSupplier3()
42: [10:54:21] Finished: testTDTSupplier3()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSDSupplierFromText()
42: [10:54:21] Finished: testSDSupplierFromText()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierStrLax1()
42: [10:54:21] Finished: testSDSupplierStrLax1()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierStrLax2()
42: [10:54:21] Finished: testSDSupplierStrLax2()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Spurious data before the first property will be ignored
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ID> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierFromTextStrLax1()
42: [10:54:21] Finished: testSDSupplierFromTextStrLax1()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: Problems encountered parsing data fields
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
42: [10:54:21] Finished: testSDSupplierFromTextStrLax2()
42: [10:54:21] Finished: testSDSupplierFromTextStrLax2()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue265()
42: [10:54:21] Finished: testIssue265()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] ERROR: End of data field name not found
42: [10:54:21] ERROR: End of data field name not found
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] ERROR: Could not sanitize molecule ending on line 16
42: [10:54:21] ERROR: Could not sanitize molecule ending on line 16
42: [10:54:21] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
42: [10:54:21] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
42: [10:54:21] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: Bond line too short: 'M  END' on line 18
42: [10:54:21] ERROR: Bond line too short: 'M  END' on line 18
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] Finished: testSDErrorHandling()
42: [10:54:21] Finished: testSDErrorHandling()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue381()
42: [10:54:21] Finished: testIssue381()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSetStreamIndices()
42: [10:54:21] Finished: testSetStreamIndices()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testMixIterAndRandom()
42: [10:54:21] Finished: testMixIterAndRandom()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: build:
42: build:
42: [10:54:21] Finished: testRemoveHs()
42: [10:54:21] Finished: testRemoveHs()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGetItemText()
42: [10:54:21] Finished: testGetItemText()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testForwardSDSupplier()
42: [10:54:21] Finished: testForwardSDSupplier()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testMissingCRSDSupplier()
42: [10:54:21] Finished: testMissingCRSDSupplier()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testIssue3482695()
42: [10:54:21] Finished: testIssue3482695()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 245. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 245. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 324. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 324. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 537. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 537. Molecule skipped.
42: [10:54:21] ERROR: Cannot convert     to int on line 558
42: [10:54:21] ERROR: Cannot convert     to int on line 558
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21] ERROR: moving to the begining of the next molecule
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 884. Molecule skipped.
42: [10:54:21]  Unhandled CTAB feature: S group SRU on line: 884. Molecule skipped.
42: [10:54:21] Finished: testIssue3525673()
42: [10:54:21] Finished: testIssue3525673()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testBlankLinesInProps()
42: [10:54:21] Finished: testBlankLinesInProps()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testSkipLines()
42: [10:54:21] Finished: testSkipLines()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGitHub23()
42: [10:54:21] Finished: testGitHub23()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: [10:54:21] Finished: testGitHub88()
42: [10:54:21] Finished: testGitHub88()
42: [10:54:21] -----------------------------------------
42: [10:54:21] -----------------------------------------
42: 
42: 
 42/130 Test  #42: testMolSupplier ....................   Passed    0.28 sec
 42/130 Test  #42: testMolSupplier ....................   Passed    0.28 sec
test 43
test 43
        Start  43: testMolWriter
        Start  43: testMolWriter
43: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter
43: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMolWriter
43: Test timeout computed to be: 9.99988e+06
43: Test timeout computed to be: 9.99988e+06
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriter()
43: [10:54:21] Running testSmilesWriter()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriter2()
43: [10:54:21] Running testSmilesWriter2()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterNoNames()
43: [10:54:21] Running testSmilesWriterNoNames()
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterClose()
43: [10:54:21] Running testSmilesWriterClose()
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] SMILES Parse Error: syntax error for input: 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Smiles parse error on line 1
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDWriter()
43: [10:54:21] Running testSDWriter()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testTDTWriter()
43: [10:54:21] Running testTDTWriter()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSmilesWriterStrm()
43: [10:54:21] Running testSmilesWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDWriterStrm()
43: [10:54:21] Running testSDWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testTDTWriterStrm()
43: [10:54:21] Running testTDTWriterStrm()
43: [10:54:21] Finished
43: [10:54:21] Finished
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: 
43: 
43: [10:54:21] -----------------------------------------
43: [10:54:21] -----------------------------------------
43: [10:54:21] Running testSDMemoryCorruption()
43: [10:54:21] Running testSDMemoryCorruption()
43: [10:54:22] Finished
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testIssue265()
43: [10:54:22] Running testIssue265()
43: [10:54:22] Finished
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testMolFileChiralFlag()
43: [10:54:22] Running testMolFileChiralFlag()
43: [10:54:22] Finished
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of mol file valence flags
43: [10:54:22] testing handling of mol file valence flags
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of mol files with reactions
43: [10:54:22] testing handling of mol files with reactions
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing handling of ZBO specs
43: [10:54:22] testing handling of ZBO specs
43: MOLBLOCK:
43: MOLBLOCK:
43: 
43: 
43:      RDKit          2D
43:      RDKit          2D
43: 
43: 
43:  11 10  0  0  0  0  0  0  0  0999 V2000
43:  11 10  0  0  0  0  0  0  0  0999 V2000
43:    -0.3380    0.2050    0.0000 Fe  0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    0.2050    0.0000 Fe  0  0  0  0  0  0  0  0  0  0  0  0
43:     0.4870    0.2050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:     0.4870    0.2050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524   -0.2075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524   -0.2075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524    0.6175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.0524    0.6175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:     1.3120    0.2050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:     1.3120    0.2050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669   -0.6200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669   -0.6200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669    1.0300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -1.7669    1.0300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -0.6200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -0.6200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.8550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380    1.8550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -1.4450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:    -0.3380   -1.4450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
43:   1  2  1  0
43:   1  2  1  0
43:   1  3  1  0
43:   1  3  1  0
43:   1  4  1  0
43:   1  4  1  0
43:   2  5  2  0
43:   2  5  2  0
43:   3  6  2  0
43:   3  6  2  0
43:   4  7  2  0
43:   4  7  2  0
43:   1  8  1  0
43:   1  8  1  0
43:   1  9  1  0
43:   1  9  1  0
43:   8 10  2  0
43:   8 10  2  0
43:   9 11  2  0
43:   9 11  2  0
43: M  ZBO  5   1   0   2   0   3   0   7   0   8   0
43: M  ZBO  5   1   0   2   0   3   0   7   0   8   0
43: M  HYD  6   1   0   2   2   3   2   4   2   8   2   9   2
43: M  HYD  6   1   0   2   2   3   2   4   2   8   2   9   2
43: M  END
43: M  END
43: ------
43: ------
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] testing SDWriter options
43: [10:54:22] testing SDWriter options
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing details of v3000 writing
43: [10:54:22] testing details of v3000 writing
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 187: A not written to mol block
43: [10:54:22] testing github issue 187: A not written to mol block
43: [10:54:22] done
43: [10:54:22] done
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 186: chiral S not written to ctab
43: [10:54:22] testing github issue 186: chiral S not written to ctab
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 189: Problems round-tripping Al2Cl6 via CTAB
43: [10:54:22] testing github issue 189: Problems round-tripping Al2Cl6 via CTAB
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 266: Bond query information written to CTAB
43: [10:54:22] testing github issue 266: Bond query information written to CTAB
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 268: Bond topology information written to CTAB
43: [10:54:22] testing github issue 268: Bond topology information written to CTAB
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 357: Hydrogens in mol blocks have a valence value set
43: [10:54:22] testing github issue 357: Hydrogens in mol blocks have a valence value set
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing test needsUpdatePropertyCache functionality in SDwriter
43: [10:54:22] testing test needsUpdatePropertyCache functionality in SDwriter
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] Running testIssue3525000()
43: [10:54:22] Running testIssue3525000()
43: [10:54:22] Finished
43: [10:54:22] Finished
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 488: SmilesWriter not creating automatic name values for molecules read from CTABs
43: [10:54:22] testing github issue 488: SmilesWriter not creating automatic name values for molecules read from CTABs
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing github issue 611: If wedged bonds are already present, write them to mol blocks
43: [10:54:22] testing github issue 611: If wedged bonds are already present, write them to mol blocks
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing SDWriter::getText()
43: [10:54:22] testing SDWriter::getText()
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: [10:54:22] testing molfile writer dative bond support
43: [10:54:22] testing molfile writer dative bond support
43: [10:54:22] -----------------------------------------
43: [10:54:22] -----------------------------------------
43: 
43: 
 43/130 Test  #43: testMolWriter ......................   Passed    0.26 sec
 43/130 Test  #43: testMolWriter ......................   Passed    0.26 sec
test 44
test 44
        Start  44: testTplParser
        Start  44: testTplParser
44: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTplParser
44: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testTplParser
44: Test timeout computed to be: 9.99988e+06
44: Test timeout computed to be: 9.99988e+06
44: [10:54:22] testing basic tpl parsing
44: [10:54:22] testing basic tpl parsing
44: [10:54:22] done
44: [10:54:22] done
44: [10:54:22] testing tpl writing
44: [10:54:22] testing tpl writing
44: [10:54:22] done
44: [10:54:22] done
 44/130 Test  #44: testTplParser ......................   Passed    0.02 sec
 44/130 Test  #44: testTplParser ......................   Passed    0.02 sec
test 45
test 45
        Start  45: testMol2ToMol
        Start  45: testMol2ToMol
45: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol
45: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testMol2ToMol
45: Test timeout computed to be: 9.99988e+06
45: Test timeout computed to be: 9.99988e+06
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing general mol2 file parsing --
45: [10:54:22] -- testing general mol2 file parsing --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE general mol2 file parsing --
45: [10:54:22] -- DONE general mol2 file parsing --
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing subst arom groups in mol2 --
45: [10:54:22] -- testing subst arom groups in mol2 --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE subst arom groups in mol2 --
45: [10:54:22] -- DONE subst arom groups in mol2 --
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] -- testing issue 3399798             --
45: [10:54:22] -- testing issue 3399798             --
45: [10:54:22] ---------------------------------------
45: [10:54:22] ---------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -- testing GitHub issue #114     --
45: [10:54:22] -- testing GitHub issue #114     --
45: [10:54:22] -----------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] -- testing GitHub issue #438: problems with metals in mol2 files  --
45: [10:54:22] -- testing GitHub issue #438: problems with metals in mol2 files  --
45: [10:54:22] -----------------------------------
45: [10:54:22] -----------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
45: [10:54:22] -- DONE                           --
45: [10:54:22] -- DONE                           --
45: [10:54:22] ------------------------------------
45: [10:54:22] ------------------------------------
 45/130 Test  #45: testMol2ToMol ......................   Passed    0.04 sec
 45/130 Test  #45: testMol2ToMol ......................   Passed    0.04 sec
test 46
test 46
        Start  46: testSequence
        Start  46: testSequence
46: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence
46: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FileParsers/testSequence
46: Test timeout computed to be: 9.99988e+06
46: Test timeout computed to be: 9.99988e+06
46:   Sequence: GREG
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   26   27
46: CONECT   27   28   28   29
46: CONECT   27   28   28   29
46: END
46: END
46: 
46: 
46:   Sequence: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN
46:   Sequence: TTCCPSIVARSNFNVCRLPGTPEAICATYTGCIIIPGATCPGDYAN
46:   HELM: PEPTIDE1{T.T.C.C.P.S.I.V.A.R.S.N.F.N.V.C.R.L.P.G.T.P.E.A.I.C.A.T.Y.T.G.C.I.I.I.P.G.A.T.C.P.G.D.Y.A.N}$$$$
46:   HELM: PEPTIDE1{T.T.C.C.P.S.I.V.A.R.S.N.F.N.V.C.R.L.P.G.T.P.E.A.I.C.A.T.Y.T.G.C.I.I.I.P.G.A.T.C.P.G.D.Y.A.N}$$$$
46:   Smiles: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)CNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CS)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@@H](N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)C(C)C)C(C)C)[C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O
46:   Smiles: CC[C@H](C)[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](NC(=O)CNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CS)NC(=O)[C@H](CS)NC(=O)[C@@H](NC(=O)[C@@H](N)[C@@H](C)O)[C@@H](C)O)[C@@H](C)CC)C(C)C)C(C)C)[C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@H](C(=O)NCC(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@H](C(=O)N[C@H](C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)N[C@@H](CS)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(N)=O)C(=O)O)[C@@H](C)O)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)CC)[C@@H](C)O)[C@@H](C)O
46:   PDB:
46:   PDB:
46: ATOM      1  N   THR A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      1  N   THR A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      2  CA  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      4  O   THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  CB  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      5  CB  THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      6  OG1 THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      6  OG1 THR A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      7  CG2 THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  CG2 THR A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  N   THR A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      8  N   THR A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      9  CA  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      9  CA  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  C   THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  C   THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  O   THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     11  O   THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     12  CB  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     12  CB  THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     13  OG1 THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     13  OG1 THR A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     14  CG2 THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     14  CG2 THR A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     15  N   CYS A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  N   CYS A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  CA  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     16  CA  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     17  C   CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     17  C   CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  O   CYS A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     18  O   CYS A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     19  CB  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     19  CB  CYS A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     20  SG  CYS A   3       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     20  SG  CYS A   3       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     21  N   CYS A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     21  N   CYS A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     22  CA  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CA  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  C   CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  C   CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     24  O   CYS A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  O   CYS A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  CB  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     25  CB  CYS A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     26  SG  CYS A   4       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     26  SG  CYS A   4       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM     27  N   PRO A   5       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     27  N   PRO A   5       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     28  CA  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     28  CA  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     29  C   PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     29  C   PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     30  O   PRO A   5       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     30  O   PRO A   5       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     31  CB  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     31  CB  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     32  CG  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     32  CG  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     33  CD  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     33  CD  PRO A   5       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     34  N   SER A   6       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     34  N   SER A   6       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     35  CA  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     35  CA  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     36  C   SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     36  C   SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     37  O   SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     37  O   SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     38  CB  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     38  CB  SER A   6       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     39  OG  SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     39  OG  SER A   6       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     40  N   ILE A   7       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     40  N   ILE A   7       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     41  CA  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     41  CA  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     42  C   ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     42  C   ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     43  O   ILE A   7       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     43  O   ILE A   7       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     44  CB  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     44  CB  ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     45  CG1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     45  CG1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     46  CG2 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     46  CG2 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     47  CD1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     47  CD1 ILE A   7       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     48  N   VAL A   8       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     48  N   VAL A   8       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     49  CA  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     49  CA  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     50  C   VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     50  C   VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     51  O   VAL A   8       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     51  O   VAL A   8       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     52  CB  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     52  CB  VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     53  CG1 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     53  CG1 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     54  CG2 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     54  CG2 VAL A   8       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     55  N   ALA A   9       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     55  N   ALA A   9       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     56  CA  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     56  CA  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     57  C   ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     57  C   ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     58  O   ALA A   9       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     58  O   ALA A   9       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     59  CB  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     59  CB  ALA A   9       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     60  N   ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     60  N   ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     61  CA  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     61  CA  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     62  C   ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     62  C   ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     63  O   ARG A  10       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     63  O   ARG A  10       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     64  CB  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     64  CB  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     65  CG  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     65  CG  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     66  CD  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     66  CD  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     67  NE  ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     67  NE  ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     68  CZ  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     68  CZ  ARG A  10       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     69  NH1 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     69  NH1 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     70  NH2 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     70  NH2 ARG A  10       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     71  N   SER A  11       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     71  N   SER A  11       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     72  CA  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     72  CA  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     73  C   SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     73  C   SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     74  O   SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     74  O   SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     75  CB  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     75  CB  SER A  11       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     76  OG  SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     76  OG  SER A  11       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     77  N   ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     77  N   ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     78  CA  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     78  CA  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     79  C   ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     79  C   ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     80  O   ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     80  O   ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     81  CB  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     81  CB  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     82  CG  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     82  CG  ASN A  12       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     83  OD1 ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     83  OD1 ASN A  12       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     84  ND2 ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     84  ND2 ASN A  12       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     85  N   PHE A  13       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     85  N   PHE A  13       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     86  CA  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     86  CA  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     87  C   PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     87  C   PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     88  O   PHE A  13       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     88  O   PHE A  13       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     89  CB  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     89  CB  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     90  CG  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     90  CG  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     91  CD1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     91  CD1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     92  CD2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     92  CD2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     93  CE1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     93  CE1 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     94  CE2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     94  CE2 PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     95  CZ  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     95  CZ  PHE A  13       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     96  N   ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     96  N   ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     97  CA  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     97  CA  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     98  C   ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     98  C   ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     99  O   ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     99  O   ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    100  CB  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    100  CB  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    101  CG  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    101  CG  ASN A  14       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    102  OD1 ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    102  OD1 ASN A  14       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    103  ND2 ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    103  ND2 ASN A  14       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    104  N   VAL A  15       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    104  N   VAL A  15       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    105  CA  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    105  CA  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    106  C   VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    106  C   VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    107  O   VAL A  15       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    107  O   VAL A  15       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    108  CB  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    108  CB  VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    109  CG1 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    109  CG1 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    110  CG2 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    110  CG2 VAL A  15       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    111  N   CYS A  16       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    111  N   CYS A  16       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    112  CA  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    112  CA  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    113  C   CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    113  C   CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    114  O   CYS A  16       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    114  O   CYS A  16       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    115  CB  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    115  CB  CYS A  16       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    116  SG  CYS A  16       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    116  SG  CYS A  16       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    117  N   ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    117  N   ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    118  CA  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    118  CA  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    119  C   ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    119  C   ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    120  O   ARG A  17       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    120  O   ARG A  17       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    121  CB  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    121  CB  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    122  CG  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    122  CG  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    123  CD  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    123  CD  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    124  NE  ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    124  NE  ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    125  CZ  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    125  CZ  ARG A  17       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    126  NH1 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    126  NH1 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    127  NH2 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    127  NH2 ARG A  17       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    128  N   LEU A  18       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    128  N   LEU A  18       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    129  CA  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    129  CA  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    130  C   LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    130  C   LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    131  O   LEU A  18       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    131  O   LEU A  18       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    132  CB  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    132  CB  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    133  CG  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    133  CG  LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    134  CD1 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    134  CD1 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    135  CD2 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    135  CD2 LEU A  18       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    136  N   PRO A  19       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    136  N   PRO A  19       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    137  CA  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    137  CA  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    138  C   PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    138  C   PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    139  O   PRO A  19       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    139  O   PRO A  19       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    140  CB  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    140  CB  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    141  CG  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    141  CG  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    142  CD  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    142  CD  PRO A  19       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    143  N   GLY A  20       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    143  N   GLY A  20       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    144  CA  GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    144  CA  GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    145  C   GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    145  C   GLY A  20       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    146  O   GLY A  20       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    146  O   GLY A  20       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    147  N   THR A  21       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    147  N   THR A  21       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    148  CA  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    148  CA  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    149  C   THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    149  C   THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    150  O   THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    150  O   THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    151  CB  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    151  CB  THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    152  OG1 THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    152  OG1 THR A  21       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    153  CG2 THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    153  CG2 THR A  21       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    154  N   PRO A  22       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    154  N   PRO A  22       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    155  CA  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    155  CA  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    156  C   PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    156  C   PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    157  O   PRO A  22       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    157  O   PRO A  22       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    158  CB  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    158  CB  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    159  CG  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    159  CG  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    160  CD  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    160  CD  PRO A  22       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    161  N   GLU A  23       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    161  N   GLU A  23       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    162  CA  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    162  CA  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    163  C   GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    163  C   GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    164  O   GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    164  O   GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    165  CB  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    165  CB  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    166  CG  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    166  CG  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    167  CD  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    167  CD  GLU A  23       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    168  OE1 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    168  OE1 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    169  OE2 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    169  OE2 GLU A  23       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    170  N   ALA A  24       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    170  N   ALA A  24       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    171  CA  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    171  CA  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    172  C   ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    172  C   ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    173  O   ALA A  24       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    173  O   ALA A  24       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    174  CB  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    174  CB  ALA A  24       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    175  N   ILE A  25       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    175  N   ILE A  25       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    176  CA  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    176  CA  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    177  C   ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    177  C   ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    178  O   ILE A  25       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    178  O   ILE A  25       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    179  CB  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    179  CB  ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    180  CG1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    180  CG1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    181  CG2 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    181  CG2 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    182  CD1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    182  CD1 ILE A  25       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    183  N   CYS A  26       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    183  N   CYS A  26       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    184  CA  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    184  CA  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    185  C   CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    185  C   CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    186  O   CYS A  26       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    186  O   CYS A  26       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    187  CB  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    187  CB  CYS A  26       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    188  SG  CYS A  26       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    188  SG  CYS A  26       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    189  N   ALA A  27       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    189  N   ALA A  27       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    190  CA  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    190  CA  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    191  C   ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    191  C   ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    192  O   ALA A  27       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    192  O   ALA A  27       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    193  CB  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    193  CB  ALA A  27       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    194  N   THR A  28       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    194  N   THR A  28       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    195  CA  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    195  CA  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    196  C   THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    196  C   THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    197  O   THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    197  O   THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    198  CB  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    198  CB  THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    199  OG1 THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    199  OG1 THR A  28       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    200  CG2 THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    200  CG2 THR A  28       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    201  N   TYR A  29       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    201  N   TYR A  29       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    202  CA  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    202  CA  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    203  C   TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    203  C   TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    204  O   TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    204  O   TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    205  CB  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    205  CB  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    206  CG  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    206  CG  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    207  CD1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    207  CD1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    208  CD2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    208  CD2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    209  CE1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    209  CE1 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    210  CE2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    210  CE2 TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    211  CZ  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    211  CZ  TYR A  29       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    212  OH  TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    212  OH  TYR A  29       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    213  N   THR A  30       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    213  N   THR A  30       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    214  CA  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    214  CA  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    215  C   THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    215  C   THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    216  O   THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    216  O   THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    217  CB  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    217  CB  THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    218  OG1 THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    218  OG1 THR A  30       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    219  CG2 THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    219  CG2 THR A  30       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    220  N   GLY A  31       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    220  N   GLY A  31       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    221  CA  GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    221  CA  GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    222  C   GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    222  C   GLY A  31       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    223  O   GLY A  31       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    223  O   GLY A  31       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    224  N   CYS A  32       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    224  N   CYS A  32       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    225  CA  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    225  CA  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    226  C   CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    226  C   CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    227  O   CYS A  32       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    227  O   CYS A  32       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    228  CB  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    228  CB  CYS A  32       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    229  SG  CYS A  32       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    229  SG  CYS A  32       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    230  N   ILE A  33       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    230  N   ILE A  33       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    231  CA  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    231  CA  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    232  C   ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    232  C   ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    233  O   ILE A  33       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    233  O   ILE A  33       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    234  CB  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    234  CB  ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    235  CG1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    235  CG1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    236  CG2 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    236  CG2 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    237  CD1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    237  CD1 ILE A  33       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    238  N   ILE A  34       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    238  N   ILE A  34       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    239  CA  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    239  CA  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    240  C   ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    240  C   ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    241  O   ILE A  34       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    241  O   ILE A  34       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    242  CB  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    242  CB  ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    243  CG1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    243  CG1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    244  CG2 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    244  CG2 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    245  CD1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    245  CD1 ILE A  34       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    246  N   ILE A  35       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    246  N   ILE A  35       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    247  CA  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    247  CA  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    248  C   ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    248  C   ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    249  O   ILE A  35       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    249  O   ILE A  35       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    250  CB  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    250  CB  ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    251  CG1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    251  CG1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    252  CG2 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    252  CG2 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    253  CD1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    253  CD1 ILE A  35       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    254  N   PRO A  36       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    254  N   PRO A  36       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    255  CA  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    255  CA  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    256  C   PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    256  C   PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    257  O   PRO A  36       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    257  O   PRO A  36       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    258  CB  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    258  CB  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    259  CG  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    259  CG  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    260  CD  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    260  CD  PRO A  36       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    261  N   GLY A  37       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    261  N   GLY A  37       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    262  CA  GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    262  CA  GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    263  C   GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    263  C   GLY A  37       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    264  O   GLY A  37       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    264  O   GLY A  37       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    265  N   ALA A  38       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    265  N   ALA A  38       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    266  CA  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    266  CA  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    267  C   ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    267  C   ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    268  O   ALA A  38       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    268  O   ALA A  38       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    269  CB  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    269  CB  ALA A  38       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    270  N   THR A  39       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    270  N   THR A  39       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    271  CA  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    271  CA  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    272  C   THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    272  C   THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    273  O   THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    273  O   THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    274  CB  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    274  CB  THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    275  OG1 THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    275  OG1 THR A  39       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    276  CG2 THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    276  CG2 THR A  39       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    277  N   CYS A  40       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    277  N   CYS A  40       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    278  CA  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    278  CA  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    279  C   CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    279  C   CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    280  O   CYS A  40       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    280  O   CYS A  40       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    281  CB  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    281  CB  CYS A  40       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    282  SG  CYS A  40       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    282  SG  CYS A  40       0.000   0.000   0.000  0.00  0.00           S  
46: ATOM    283  N   PRO A  41       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    283  N   PRO A  41       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    284  CA  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    284  CA  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    285  C   PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    285  C   PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    286  O   PRO A  41       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    286  O   PRO A  41       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    287  CB  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    287  CB  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    288  CG  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    288  CG  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    289  CD  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    289  CD  PRO A  41       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    290  N   GLY A  42       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    290  N   GLY A  42       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    291  CA  GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    291  CA  GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    292  C   GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    292  C   GLY A  42       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    293  O   GLY A  42       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    293  O   GLY A  42       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    294  N   ASP A  43       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    294  N   ASP A  43       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    295  CA  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    295  CA  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    296  C   ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    296  C   ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    297  O   ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    297  O   ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    298  CB  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    298  CB  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    299  CG  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    299  CG  ASP A  43       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    300  OD1 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    300  OD1 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    301  OD2 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    301  OD2 ASP A  43       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    302  N   TYR A  44       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    302  N   TYR A  44       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    303  CA  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    303  CA  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    304  C   TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    304  C   TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    305  O   TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    305  O   TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    306  CB  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    306  CB  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    307  CG  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    307  CG  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    308  CD1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    308  CD1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    309  CD2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    309  CD2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    310  CE1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    310  CE1 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    311  CE2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    311  CE2 TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    312  CZ  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    312  CZ  TYR A  44       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    313  OH  TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    313  OH  TYR A  44       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    314  N   ALA A  45       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    314  N   ALA A  45       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    315  CA  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    315  CA  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    316  C   ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    316  C   ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    317  O   ALA A  45       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    317  O   ALA A  45       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    318  CB  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    318  CB  ALA A  45       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    319  N   ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    319  N   ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    320  CA  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    320  CA  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    321  C   ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    321  C   ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    322  O   ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    322  O   ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    323  CB  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    323  CB  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    324  CG  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    324  CG  ASN A  46       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM    325  OD1 ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    325  OD1 ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    326  ND2 ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    326  ND2 ASN A  46       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM    327  OXT ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM    327  OXT ASN A  46       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    1    2
46: CONECT    2    3    5
46: CONECT    2    3    5
46: CONECT    3    4    4    8
46: CONECT    3    4    4    8
46: CONECT    5    6    7
46: CONECT    5    6    7
46: CONECT    8    9
46: CONECT    8    9
46: CONECT    9   10   12
46: CONECT    9   10   12
46: CONECT   10   11   11   15
46: CONECT   10   11   11   15
46: CONECT   12   13   14
46: CONECT   12   13   14
46: CONECT   15   16
46: CONECT   15   16
46: CONECT   16   17   19
46: CONECT   16   17   19
46: CONECT   17   18   18   21
46: CONECT   17   18   18   21
46: CONECT   19   20
46: CONECT   19   20
46: CONECT   21   22
46: CONECT   21   22
46: CONECT   22   23   25
46: CONECT   22   23   25
46: CONECT   23   24   24   27
46: CONECT   23   24   24   27
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   27   28   33
46: CONECT   27   28   33
46: CONECT   28   29   31
46: CONECT   28   29   31
46: CONECT   29   30   30   34
46: CONECT   29   30   30   34
46: CONECT   31   32
46: CONECT   31   32
46: CONECT   32   33
46: CONECT   32   33
46: CONECT   34   35
46: CONECT   34   35
46: CONECT   35   36   38
46: CONECT   35   36   38
46: CONECT   36   37   37   40
46: CONECT   36   37   37   40
46: CONECT   38   39
46: CONECT   38   39
46: CONECT   40   41
46: CONECT   40   41
46: CONECT   41   42   44
46: CONECT   41   42   44
46: CONECT   42   43   43   48
46: CONECT   42   43   43   48
46: CONECT   44   45   46
46: CONECT   44   45   46
46: CONECT   46   47
46: CONECT   46   47
46: CONECT   48   49
46: CONECT   48   49
46: CONECT   49   50   52
46: CONECT   49   50   52
46: CONECT   50   51   51   55
46: CONECT   50   51   51   55
46: CONECT   52   53   54
46: CONECT   52   53   54
46: CONECT   55   56
46: CONECT   55   56
46: CONECT   56   57   59
46: CONECT   56   57   59
46: CONECT   57   58   58   60
46: CONECT   57   58   58   60
46: CONECT   60   61
46: CONECT   60   61
46: CONECT   61   62   64
46: CONECT   61   62   64
46: CONECT   62   63   63   71
46: CONECT   62   63   63   71
46: CONECT   64   65
46: CONECT   64   65
46: CONECT   65   66
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   66   67
46: CONECT   67   68
46: CONECT   67   68
46: CONECT   68   69   69   70
46: CONECT   68   69   69   70
46: CONECT   71   72
46: CONECT   71   72
46: CONECT   72   73   75
46: CONECT   72   73   75
46: CONECT   73   74   74   77
46: CONECT   73   74   74   77
46: CONECT   75   76
46: CONECT   75   76
46: CONECT   77   78
46: CONECT   77   78
46: CONECT   78   79   81
46: CONECT   78   79   81
46: CONECT   79   80   80   85
46: CONECT   79   80   80   85
46: CONECT   81   82
46: CONECT   81   82
46: CONECT   82   83   83   84
46: CONECT   82   83   83   84
46: CONECT   85   86
46: CONECT   85   86
46: CONECT   86   87   89
46: CONECT   86   87   89
46: CONECT   87   88   88   96
46: CONECT   87   88   88   96
46: CONECT   89   90
46: CONECT   89   90
46: CONECT   90   91   91   92
46: CONECT   90   91   91   92
46: CONECT   91   93
46: CONECT   91   93
46: CONECT   92   94   94
46: CONECT   92   94   94
46: CONECT   93   95   95
46: CONECT   93   95   95
46: CONECT   94   95
46: CONECT   94   95
46: CONECT   96   97
46: CONECT   96   97
46: CONECT   97   98  100
46: CONECT   97   98  100
46: CONECT   98   99   99  104
46: CONECT   98   99   99  104
46: CONECT  100  101
46: CONECT  100  101
46: CONECT  101  102  102  103
46: CONECT  101  102  102  103
46: CONECT  104  105
46: CONECT  104  105
46: CONECT  105  106  108
46: CONECT  105  106  108
46: CONECT  106  107  107  111
46: CONECT  106  107  107  111
46: CONECT  108  109  110
46: CONECT  108  109  110
46: CONECT  111  112
46: CONECT  111  112
46: CONECT  112  113  115
46: CONECT  112  113  115
46: CONECT  113  114  114  117
46: CONECT  113  114  114  117
46: CONECT  115  116
46: CONECT  115  116
46: CONECT  117  118
46: CONECT  117  118
46: CONECT  118  119  121
46: CONECT  118  119  121
46: CONECT  119  120  120  128
46: CONECT  119  120  120  128
46: CONECT  121  122
46: CONECT  121  122
46: CONECT  122  123
46: CONECT  122  123
46: CONECT  123  124
46: CONECT  123  124
46: CONECT  124  125
46: CONECT  124  125
46: CONECT  125  126  126  127
46: CONECT  125  126  126  127
46: CONECT  128  129
46: CONECT  128  129
46: CONECT  129  130  132
46: CONECT  129  130  132
46: CONECT  130  131  131  136
46: CONECT  130  131  131  136
46: CONECT  132  133
46: CONECT  132  133
46: CONECT  133  134  135
46: CONECT  133  134  135
46: CONECT  136  137  142
46: CONECT  136  137  142
46: CONECT  137  138  140
46: CONECT  137  138  140
46: CONECT  138  139  139  143
46: CONECT  138  139  139  143
46: CONECT  140  141
46: CONECT  140  141
46: CONECT  141  142
46: CONECT  141  142
46: CONECT  143  144
46: CONECT  143  144
46: CONECT  144  145
46: CONECT  144  145
46: CONECT  145  146  146  147
46: CONECT  145  146  146  147
46: CONECT  147  148
46: CONECT  147  148
46: CONECT  148  149  151
46: CONECT  148  149  151
46: CONECT  149  150  150  154
46: CONECT  149  150  150  154
46: CONECT  151  152  153
46: CONECT  151  152  153
46: CONECT  154  155  160
46: CONECT  154  155  160
46: CONECT  155  156  158
46: CONECT  155  156  158
46: CONECT  156  157  157  161
46: CONECT  156  157  157  161
46: CONECT  158  159
46: CONECT  158  159
46: CONECT  159  160
46: CONECT  159  160
46: CONECT  161  162
46: CONECT  161  162
46: CONECT  162  163  165
46: CONECT  162  163  165
46: CONECT  163  164  164  170
46: CONECT  163  164  164  170
46: CONECT  165  166
46: CONECT  165  166
46: CONECT  166  167
46: CONECT  166  167
46: CONECT  167  168  168  169
46: CONECT  167  168  168  169
46: CONECT  170  171
46: CONECT  170  171
46: CONECT  171  172  174
46: CONECT  171  172  174
46: CONECT  172  173  173  175
46: CONECT  172  173  173  175
46: CONECT  175  176
46: CONECT  175  176
46: CONECT  176  177  179
46: CONECT  176  177  179
46: CONECT  177  178  178  183
46: CONECT  177  178  178  183
46: CONECT  179  180  181
46: CONECT  179  180  181
46: CONECT  181  182
46: CONECT  181  182
46: CONECT  183  184
46: CONECT  183  184
46: CONECT  184  185  187
46: CONECT  184  185  187
46: CONECT  185  186  186  189
46: CONECT  185  186  186  189
46: CONECT  187  188
46: CONECT  187  188
46: CONECT  189  190
46: CONECT  189  190
46: CONECT  190  191  193
46: CONECT  190  191  193
46: CONECT  191  192  192  194
46: CONECT  191  192  192  194
46: CONECT  194  195
46: CONECT  194  195
46: CONECT  195  196  198
46: CONECT  195  196  198
46: CONECT  196  197  197  201
46: CONECT  196  197  197  201
46: CONECT  198  199  200
46: CONECT  198  199  200
46: CONECT  201  202
46: CONECT  201  202
46: CONECT  202  203  205
46: CONECT  202  203  205
46: CONECT  203  204  204  213
46: CONECT  203  204  204  213
46: CONECT  205  206
46: CONECT  205  206
46: CONECT  206  207  207  208
46: CONECT  206  207  207  208
46: CONECT  207  209
46: CONECT  207  209
46: CONECT  208  210  210
46: CONECT  208  210  210
46: CONECT  209  211  211
46: CONECT  209  211  211
46: CONECT  210  211
46: CONECT  210  211
46: CONECT  211  212
46: CONECT  211  212
46: CONECT  213  214
46: CONECT  213  214
46: CONECT  214  215  217
46: CONECT  214  215  217
46: CONECT  215  216  216  220
46: CONECT  215  216  216  220
46: CONECT  217  218  219
46: CONECT  217  218  219
46: CONECT  220  221
46: CONECT  220  221
46: CONECT  221  222
46: CONECT  221  222
46: CONECT  222  223  223  224
46: CONECT  222  223  223  224
46: CONECT  224  225
46: CONECT  224  225
46: CONECT  225  226  228
46: CONECT  225  226  228
46: CONECT  226  227  227  230
46: CONECT  226  227  227  230
46: CONECT  228  229
46: CONECT  228  229
46: CONECT  230  231
46: CONECT  230  231
46: CONECT  231  232  234
46: CONECT  231  232  234
46: CONECT  232  233  233  238
46: CONECT  232  233  233  238
46: CONECT  234  235  236
46: CONECT  234  235  236
46: CONECT  236  237
46: CONECT  236  237
46: CONECT  238  239
46: CONECT  238  239
46: CONECT  239  240  242
46: CONECT  239  240  242
46: CONECT  240  241  241  246
46: CONECT  240  241  241  246
46: CONECT  242  243  244
46: CONECT  242  243  244
46: CONECT  244  245
46: CONECT  244  245
46: CONECT  246  247
46: CONECT  246  247
46: CONECT  247  248  250
46: CONECT  247  248  250
46: CONECT  248  249  249  254
46: CONECT  248  249  249  254
46: CONECT  250  251  252
46: CONECT  250  251  252
46: CONECT  252  253
46: CONECT  252  253
46: CONECT  254  255  260
46: CONECT  254  255  260
46: CONECT  255  256  258
46: CONECT  255  256  258
46: CONECT  256  257  257  261
46: CONECT  256  257  257  261
46: CONECT  258  259
46: CONECT  258  259
46: CONECT  259  260
46: CONECT  259  260
46: CONECT  261  262
46: CONECT  261  262
46: CONECT  262  263
46: CONECT  262  263
46: CONECT  263  264  264  265
46: CONECT  263  264  264  265
46: CONECT  265  266
46: CONECT  265  266
46: CONECT  266  267  269
46: CONECT  266  267  269
46: CONECT  267  268  268  270
46: CONECT  267  268  268  270
46: CONECT  270  271
46: CONECT  270  271
46: CONECT  271  272  274
46: CONECT  271  272  274
46: CONECT  272  273  273  277
46: CONECT  272  273  273  277
46: CONECT  274  275  276
46: CONECT  274  275  276
46: CONECT  277  278
46: CONECT  277  278
46: CONECT  278  279  281
46: CONECT  278  279  281
46: CONECT  279  280  280  283
46: CONECT  279  280  280  283
46: CONECT  281  282
46: CONECT  281  282
46: CONECT  283  284  289
46: CONECT  283  284  289
46: CONECT  284  285  287
46: CONECT  284  285  287
46: CONECT  285  286  286  290
46: CONECT  285  286  286  290
46: CONECT  287  288
46: CONECT  287  288
46: CONECT  288  289
46: CONECT  288  289
46: CONECT  290  291
46: CONECT  290  291
46: CONECT  291  292
46: CONECT  291  292
46: CONECT  292  293  293  294
46: CONECT  292  293  293  294
46: CONECT  294  295
46: CONECT  294  295
46: CONECT  295  296  298
46: CONECT  295  296  298
46: CONECT  296  297  297  302
46: CONECT  296  297  297  302
46: CONECT  298  299
46: CONECT  298  299
46: CONECT  299  300  300  301
46: CONECT  299  300  300  301
46: CONECT  302  303
46: CONECT  302  303
46: CONECT  303  304  306
46: CONECT  303  304  306
46: CONECT  304  305  305  314
46: CONECT  304  305  305  314
46: CONECT  306  307
46: CONECT  306  307
46: CONECT  307  308  308  309
46: CONECT  307  308  308  309
46: CONECT  308  310
46: CONECT  308  310
46: CONECT  309  311  311
46: CONECT  309  311  311
46: CONECT  310  312  312
46: CONECT  310  312  312
46: CONECT  311  312
46: CONECT  311  312
46: CONECT  312  313
46: CONECT  312  313
46: CONECT  314  315
46: CONECT  314  315
46: CONECT  315  316  318
46: CONECT  315  316  318
46: CONECT  316  317  317  319
46: CONECT  316  317  317  319
46: CONECT  319  320
46: CONECT  319  320
46: CONECT  320  321  323
46: CONECT  320  321  323
46: CONECT  321  322  322  327
46: CONECT  321  322  322  327
46: CONECT  323  324
46: CONECT  323  324
46: CONECT  324  325  325  326
46: CONECT  324  325  325  326
46: END
46: END
46: 
46: 
46:   Sequence: GREG
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   Smiles: N=C(N)NCCC[C@H](NC(=O)CN)C(=O)N[C@@H](CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     23  OE1 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     24  OE2 GLU A   3       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  0.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  0.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  0.00  0.00           O  
46: CONECT    1    2
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   26   27
46: CONECT   27   28   28   29
46: CONECT   27   28   28   29
46: END
46: END
46: 
46: 
46:   Sequence: CYIQNCPLG
46:   Sequence: CYIQNCPLG
46:   HELM: PEPTIDE1{C.Y.I.Q.N.C.P.L.G.[am]}$PEPTIDE1,PEPTIDE1,1:R3-6:R3$$$
46:   HELM: PEPTIDE1{C.Y.I.Q.N.C.P.L.G.[am]}$PEPTIDE1,PEPTIDE1,1:R3-6:R3$$$
46:   Smiles: CC[C@H](C)[C@@H]1NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@@H](N)CSSC[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CC(C)C)C(=O)NCC(N)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(N)=O)NC1=O
46:   Smiles: CC[C@H](C)[C@@H]1NC(=O)[C@H](Cc2ccc(O)cc2)NC(=O)[C@@H](N)CSSC[C@@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CC(C)C)C(=O)NCC(N)=O)NC(=O)[C@H](CC(N)=O)NC(=O)[C@H](CCC(N)=O)NC1=O
46:   PDB:
46:   PDB:
46: ATOM      1  N   CYS A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      1  N   CYS A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      2  CA  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      2  CA  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      4  O   CYS A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      4  O   CYS A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      5  CB  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      5  CB  CYS A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      6  SG  CYS A   1       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM      6  SG  CYS A   1       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM      7  N   TYR A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      7  N   TYR A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      8  CA  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      8  CA  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      9  C   TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      9  C   TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     10  O   TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     10  O   TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     11  CB  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     11  CB  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     12  CG  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     12  CG  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     13  CD1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     13  CD1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     14  CD2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     14  CD2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     15  CE1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     15  CE1 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     16  CE2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     16  CE2 TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     17  CZ  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     17  CZ  TYR A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     18  OH  TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     18  OH  TYR A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     19  N   ILE A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     19  N   ILE A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     20  CA  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     20  CA  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     21  C   ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     21  C   ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     22  O   ILE A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     22  O   ILE A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     23  CB  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     23  CB  ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     24  CG1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     24  CG1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG2 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG2 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD1 ILE A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     27  N   GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     27  N   GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     28  CA  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     28  CA  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     30  O   GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     30  O   GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     31  CB  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     31  CB  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CD  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CD  GLN A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     34  OE1 GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     34  OE1 GLN A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     35  NE2 GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     35  NE2 GLN A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     36  N   ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     36  N   ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     37  CA  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     37  CA  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     38  C   ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     38  C   ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     39  O   ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     39  O   ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     40  CB  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     40  CB  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     41  CG  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     41  CG  ASN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     42  OD1 ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     42  OD1 ASN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     43  ND2 ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     43  ND2 ASN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     44  N   CYS A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     44  N   CYS A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     45  CA  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     45  CA  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     46  C   CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     46  C   CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     47  O   CYS A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     47  O   CYS A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     48  CB  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     48  CB  CYS A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     49  SG  CYS A   6       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM     49  SG  CYS A   6       0.000   0.000   0.000 -0.00  0.00           S  
46: ATOM     50  N   PRO A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     50  N   PRO A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     51  CA  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     51  CA  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     52  C   PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     52  C   PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     53  O   PRO A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     53  O   PRO A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     54  CB  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     54  CB  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     55  CG  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     55  CG  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     56  CD  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     56  CD  PRO A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     57  N   LEU A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     57  N   LEU A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     58  CA  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     58  CA  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     59  C   LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     59  C   LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     60  O   LEU A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     60  O   LEU A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     61  CB  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     61  CB  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     62  CG  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     62  CG  LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  CD1 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  CD1 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     64  CD2 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     64  CD2 LEU A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     65  N   GLY A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     65  N   GLY A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     66  CA  GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     66  CA  GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  C   GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  C   GLY A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     68  O   GLY A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     68  O   GLY A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   69  N   NH2 A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   69  N   NH2 A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: CONECT    1    2
46: CONECT    1    2
46: CONECT    2    3    5
46: CONECT    2    3    5
46: CONECT    3    4    4    7
46: CONECT    3    4    4    7
46: CONECT    5    6
46: CONECT    5    6
46: CONECT    6   49
46: CONECT    6   49
46: CONECT    7    8
46: CONECT    7    8
46: CONECT    8    9   11
46: CONECT    8    9   11
46: CONECT    9   10   10   19
46: CONECT    9   10   10   19
46: CONECT   11   12
46: CONECT   11   12
46: CONECT   12   13   13   14
46: CONECT   12   13   13   14
46: CONECT   13   15
46: CONECT   13   15
46: CONECT   14   16   16
46: CONECT   14   16   16
46: CONECT   15   17   17
46: CONECT   15   17   17
46: CONECT   16   17
46: CONECT   16   17
46: CONECT   17   18
46: CONECT   17   18
46: CONECT   19   20
46: CONECT   19   20
46: CONECT   20   21   23
46: CONECT   20   21   23
46: CONECT   21   22   22   27
46: CONECT   21   22   22   27
46: CONECT   23   24   25
46: CONECT   23   24   25
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   27   28
46: CONECT   27   28
46: CONECT   28   29   31
46: CONECT   28   29   31
46: CONECT   29   30   30   36
46: CONECT   29   30   30   36
46: CONECT   31   32
46: CONECT   31   32
46: CONECT   32   33
46: CONECT   32   33
46: CONECT   33   34   34   35
46: CONECT   33   34   34   35
46: CONECT   36   37
46: CONECT   36   37
46: CONECT   37   38   40
46: CONECT   37   38   40
46: CONECT   38   39   39   44
46: CONECT   38   39   39   44
46: CONECT   40   41
46: CONECT   40   41
46: CONECT   41   42   42   43
46: CONECT   41   42   42   43
46: CONECT   44   45
46: CONECT   44   45
46: CONECT   45   46   48
46: CONECT   45   46   48
46: CONECT   46   47   47   50
46: CONECT   46   47   47   50
46: CONECT   48   49
46: CONECT   48   49
46: CONECT   50   51   56
46: CONECT   50   51   56
46: CONECT   51   52   54
46: CONECT   51   52   54
46: CONECT   52   53   53   57
46: CONECT   52   53   53   57
46: CONECT   54   55
46: CONECT   54   55
46: CONECT   55   56
46: CONECT   55   56
46: CONECT   57   58
46: CONECT   57   58
46: CONECT   58   59   61
46: CONECT   58   59   61
46: CONECT   59   60   60   65
46: CONECT   59   60   60   65
46: CONECT   61   62
46: CONECT   61   62
46: CONECT   62   63   64
46: CONECT   62   63   64
46: CONECT   65   66
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   66   67
46: CONECT   67   68   68   69
46: CONECT   67   68   68   69
46: END
46: END
46: 
46: 
46:   Sequence: LfPVXLfPVX
46:   Sequence: LfPVXLfPVX
46:   HELM: PEPTIDE1{L.[dF].P.V.[Orn].L.[dF].P.V.[Orn]}$PEPTIDE1,PEPTIDE1,10:R2-1:R1$$$
46:   HELM: PEPTIDE1{L.[dF].P.V.[Orn].L.[dF].P.V.[Orn]}$PEPTIDE1,PEPTIDE1,10:R2-1:R1$$$
46:   Smiles: CC(C)C[C@@H]1NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC1=O
46:   Smiles: CC(C)C[C@@H]1NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CCCN)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc2ccccc2)NC1=O
46:   PDB:
46:   PDB:
46: ATOM      1  N   LEU A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      1  N   LEU A   1       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM      2  CA  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      2  CA  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      3  C   LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      4  O   LEU A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      4  O   LEU A   1       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM      5  CB  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      5  CB  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      6  CG  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      6  CG  LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      7  CD1 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      7  CD1 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      8  CD2 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM      8  CD2 LEU A   1       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM    9  N   DPN A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM    9  N   DPN A   2       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   10  CA  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   10  CA  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   11  C   DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   11  C   DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   12  O   DPN A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   12  O   DPN A   2       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   13  CB  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   13  CB  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   14  CG  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   14  CG  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   15  CD1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   15  CD1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   16  CD2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   16  CD2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   17  CE1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   17  CE1 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   18  CE2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   18  CE2 DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   19  CZ  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   19  CZ  DPN A   2       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     20  N   PRO A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     20  N   PRO A   3       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     21  CA  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     21  CA  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     22  C   PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     22  C   PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     23  O   PRO A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     23  O   PRO A   3       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     24  CB  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     24  CB  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     25  CG  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     26  CD  PRO A   3       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     27  N   VAL A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     27  N   VAL A   4       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     28  CA  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     28  CA  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     29  C   VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     30  O   VAL A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     30  O   VAL A   4       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     31  CB  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     31  CB  VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG1 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     32  CG1 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CG2 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     33  CG2 VAL A   4       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   34  N   ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   34  N   ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   35  CA  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   35  CA  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   36  C   ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   36  C   ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   37  O   ORN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   37  O   ORN A   5       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   38  CB  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   38  CB  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   39  CG  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   39  CG  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   40  CD  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   40  CD  ORN A   5       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   41  NE  ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   41  NE  ORN A   5       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     42  N   LEU A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     42  N   LEU A   6       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     43  CA  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     43  CA  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     44  C   LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     44  C   LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     45  O   LEU A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     45  O   LEU A   6       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     46  CB  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     46  CB  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     47  CG  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     47  CG  LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     48  CD1 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     48  CD1 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     49  CD2 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     49  CD2 LEU A   6       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   50  N   DPN A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   50  N   DPN A   7       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   51  CA  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   51  CA  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   52  C   DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   52  C   DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   53  O   DPN A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   53  O   DPN A   7       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   54  CB  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   54  CB  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   55  CG  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   55  CG  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   56  CD1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   56  CD1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   57  CD2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   57  CD2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   58  CE1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   58  CE1 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   59  CE2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   59  CE2 DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   60  CZ  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   60  CZ  DPN A   7       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     61  N   PRO A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     61  N   PRO A   8       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     62  CA  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     62  CA  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  C   PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     63  C   PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     64  O   PRO A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     64  O   PRO A   8       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     65  CB  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     65  CB  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     66  CG  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     66  CG  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  CD  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     67  CD  PRO A   8       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     68  N   VAL A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     68  N   VAL A   9       0.000   0.000   0.000 -0.00  0.00           N  
46: ATOM     69  CA  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     69  CA  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     70  C   VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     70  C   VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     71  O   VAL A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     71  O   VAL A   9       0.000   0.000   0.000 -0.00  0.00           O  
46: ATOM     72  CB  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     72  CB  VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     73  CG1 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     73  CG1 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     74  CG2 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: ATOM     74  CG2 VAL A   9       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   75  N   ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   75  N   ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   76  CA  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   76  CA  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   77  C   ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   77  C   ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   78  O   ORN A  10       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   78  O   ORN A  10       0.000   0.000   0.000 -0.00  0.00           O  
46: HETATM   79  CB  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   79  CB  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   80  CG  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   80  CG  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   81  CD  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   81  CD  ORN A  10       0.000   0.000   0.000 -0.00  0.00           C  
46: HETATM   82  NE  ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: HETATM   82  NE  ORN A  10       0.000   0.000   0.000 -0.00  0.00           N  
46: CONECT    1    2   77
46: CONECT    1    2   77
46: CONECT    2    3    5
46: CONECT    2    3    5
46: CONECT    3    4    4    9
46: CONECT    3    4    4    9
46: CONECT    5    6
46: CONECT    5    6
46: CONECT    6    7    8
46: CONECT    6    7    8
46: CONECT    9   10
46: CONECT    9   10
46: CONECT   10   11   13
46: CONECT   10   11   13
46: CONECT   11   12   12   20
46: CONECT   11   12   12   20
46: CONECT   13   14
46: CONECT   13   14
46: CONECT   14   15   15   16
46: CONECT   14   15   15   16
46: CONECT   15   17
46: CONECT   15   17
46: CONECT   16   18   18
46: CONECT   16   18   18
46: CONECT   17   19   19
46: CONECT   17   19   19
46: CONECT   18   19
46: CONECT   18   19
46: CONECT   20   21   26
46: CONECT   20   21   26
46: CONECT   21   22   24
46: CONECT   21   22   24
46: CONECT   22   23   23   27
46: CONECT   22   23   23   27
46: CONECT   24   25
46: CONECT   24   25
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   27   28
46: CONECT   27   28
46: CONECT   28   29   31
46: CONECT   28   29   31
46: CONECT   29   30   30   34
46: CONECT   29   30   30   34
46: CONECT   31   32   33
46: CONECT   31   32   33
46: CONECT   34   35
46: CONECT   34   35
46: CONECT   35   36   38
46: CONECT   35   36   38
46: CONECT   36   37   37   42
46: CONECT   36   37   37   42
46: CONECT   38   39
46: CONECT   38   39
46: CONECT   39   40
46: CONECT   39   40
46: CONECT   40   41
46: CONECT   40   41
46: CONECT   42   43
46: CONECT   42   43
46: CONECT   43   44   46
46: CONECT   43   44   46
46: CONECT   44   45   45   50
46: CONECT   44   45   45   50
46: CONECT   46   47
46: CONECT   46   47
46: CONECT   47   48   49
46: CONECT   47   48   49
46: CONECT   50   51
46: CONECT   50   51
46: CONECT   51   52   54
46: CONECT   51   52   54
46: CONECT   52   53   53   61
46: CONECT   52   53   53   61
46: CONECT   54   55
46: CONECT   54   55
46: CONECT   55   56   56   57
46: CONECT   55   56   56   57
46: CONECT   56   58
46: CONECT   56   58
46: CONECT   57   59   59
46: CONECT   57   59   59
46: CONECT   58   60   60
46: CONECT   58   60   60
46: CONECT   59   60
46: CONECT   59   60
46: CONECT   61   62   67
46: CONECT   61   62   67
46: CONECT   62   63   65
46: CONECT   62   63   65
46: CONECT   63   64   64   68
46: CONECT   63   64   64   68
46: CONECT   65   66
46: CONECT   65   66
46: CONECT   66   67
46: CONECT   66   67
46: CONECT   68   69
46: CONECT   68   69
46: CONECT   69   70   72
46: CONECT   69   70   72
46: CONECT   70   71   71   75
46: CONECT   70   71   71   75
46: CONECT   72   73   74
46: CONECT   72   73   74
46: CONECT   75   76
46: CONECT   75   76
46: CONECT   76   77   79
46: CONECT   76   77   79
46: CONECT   77   78   78
46: CONECT   77   78   78
46: CONECT   79   80
46: CONECT   79   80
46: CONECT   80   81
46: CONECT   80   81
46: CONECT   81   82
46: CONECT   81   82
46: END
46: END
46: 
46: 
46:   Sequence: GREG
46:   Sequence: GREG
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   HELM: PEPTIDE1{G.R.E.G}$$$$
46:   Smiles: N=C(N)NCCCC(NC(=O)CN)C(=O)NC(CCC(=O)O)C(=O)NCC(=O)O
46:   Smiles: N=C(N)NCCCC(NC(=O)CN)C(=O)NC(CCC(=O)O)C(=O)NCC(=O)O
46:   PDB:
46:   PDB:
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      1  N   GLY A   1       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      2  CA  GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      3  C   GLY A   1       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      4  O   GLY A   1       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      5  N   ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      6  CA  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      7  C   ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      8  O   ARG A   2       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM      9  CB  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     10  CG  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     11  CD  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     12  NE  ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     13  CZ  ARG A   2       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     14  NH1 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     15  NH2 ARG A   2       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     16  N   GLU A   3       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     17  CA  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     18  C   GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     19  O   GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     20  CB  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     21  CG  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     22  CD  GLU A   3       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     23  OD1 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     23  OD1 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     24  OD2 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     24  OD2 GLU A   3       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     25  N   GLY A   4       0.000   0.000   0.000  1.00  0.00           N  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     26  CA  GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     27  C   GLY A   4       0.000   0.000   0.000  1.00  0.00           C  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     28  O   GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: ATOM     29  OXT GLY A   4       0.000   0.000   0.000  1.00  0.00           O  
46: CONECT    1    2
46: CONECT    1    2
46: CONECT    2    3
46: CONECT    2    3
46: CONECT    3    4    4    5
46: CONECT    3    4    4    5
46: CONECT    5    6
46: CONECT    5    6
46: CONECT    6    7    9
46: CONECT    6    7    9
46: CONECT    7    8    8   16
46: CONECT    7    8    8   16
46: CONECT    9   10
46: CONECT    9   10
46: CONECT   10   11
46: CONECT   10   11
46: CONECT   11   12
46: CONECT   11   12
46: CONECT   12   13
46: CONECT   12   13
46: CONECT   13   14   14   15
46: CONECT   13   14   14   15
46: CONECT   16   17
46: CONECT   16   17
46: CONECT   17   18   20
46: CONECT   17   18   20
46: CONECT   18   19   19   25
46: CONECT   18   19   19   25
46: CONECT   20   21
46: CONECT   20   21
46: CONECT   21   22
46: CONECT   21   22
46: CONECT   22   23   23   24
46: CONECT   22   23   23   24
46: CONECT   25   26
46: CONECT   25   26
46: CONECT   26   27
46: CONECT   26   27
46: CONECT   27   28   28   29
46: CONECT   27   28   28   29
46: END
46: END
46: 
46: 
 46/130 Test  #46: testSequence .......................   Passed    0.05 sec
 46/130 Test  #46: testSequence .......................   Passed    0.05 sec
test 47
test 47
        Start  47: testSubstructMatch
        Start  47: testSubstructMatch
47: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/testSubstructMatch
47: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Substruct/testSubstructMatch
47: Test timeout computed to be: 9.99988e+06
47: Test timeout computed to be: 9.99988e+06
47:  ----------------- Test 1
47:  ----------------- Test 1
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 2
47:  ----------------- Test 2
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 3
47:  ----------------- Test 3
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 4
47:  ----------------- Test 4
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 5
47:  ----------------- Test 5
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 5 QueryRoot
47:  ----------------- Test 5 QueryRoot
47: Done
47: Done
47: 
47: 
47:  ----------------- Test 6 (Issue71 related)
47:  ----------------- Test 6 (Issue71 related)
47: Done
47: Done
47: 
47: 
47:  ----------------- Testing serial numbers on recursive queries
47:  ----------------- Testing serial numbers on recursive queries
47: Done
47: Done
47: 
47: 
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test multithreading
47: [10:54:22]     Test multithreading
47: reading molecules
47: reading molecules
47:  hits: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47:  hits: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47: processing
47: processing
47:  launch :0
47:  launch :0
47:  launch :1
47:  launch :1
47:  launch :2
47:  launch :2
47:  launch :3
47:  launch :3
47:  done
47:  done
47:  hits2: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47:  hits2: 1111110111111111111111011111100011011011111101010111011110111101111111111111111111111011111011111110
47: processing2
47: processing2
47:  launch2 :0
47:  launch2 :0
47:  launch2 :1
47:  launch2 :1
47:  launch2 :2
47:  launch2 :2
47:  launch2 :3
47:  launch2 :3
47:  done
47:  done
47:  preprocessing 3
47:  preprocessing 3
47:  hits3: 1110100011001000010011100110100011011000010101000100110010101111011100101000001111110000010100100110
47:  hits3: 1110100011001000010011100110100011011000010101000100110010101111011100101000001111110000010100100110
47: processing3
47: processing3
47:  launch3 :0
47:  launch3 :0
47:  launch3 :1
47:  launch3 :1
47:  launch3 :2
47:  launch3 :2
47:  launch3 :3
47:  launch3 :3
47:  done
47:  done
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 15
47: [10:54:22]     Test GitHub issue 15
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 409
47: [10:54:22]     Test GitHub issue 409
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test chiral matching
47: [10:54:22]     Test chiral matching
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test GitHub issue 688: partially specified chiral substructure queries don't work properly
47: [10:54:22]     Test GitHub issue 688: partially specified chiral substructure queries don't work properly
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test dative-bond matching
47: [10:54:22]     Test dative-bond matching
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test cis/trans matching
47: [10:54:22]     Test cis/trans matching
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Test cis/trans matching part 2
47: [10:54:22]     Test cis/trans matching part 2
47: [10:54:22]   done
47: [10:54:22]   done
47: [10:54:22] -------------------------------------
47: [10:54:22] -------------------------------------
47: [10:54:22]     Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS
47: [10:54:22]     Testing Github #1389: Substructure matching with chirality failure when query is built from SMARTS
47: [10:54:22]   done
47: [10:54:22]   done
 47/130 Test  #47: testSubstructMatch .................   Passed    0.46 sec
 47/130 Test  #47: testSubstructMatch .................   Passed    0.46 sec
test 48
test 48
        Start  48: testReaction
        Start  48: testReaction
48: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction
48: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReaction
48: Test timeout computed to be: 9.99988e+06
48: Test timeout computed to be: 9.99988e+06
48: [10:54:22] ********************************************************
48: [10:54:22] ********************************************************
48: [10:54:22] Testing Chemical Reactions 
48: [10:54:22] Testing Chemical Reactions 
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing ChemicalReaction infrastructure
48: [10:54:22] Testing ChemicalReaction infrastructure
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing simple reactions
48: [10:54:22] Testing simple reactions
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing ring formation reactions
48: [10:54:22] Testing ring formation reactions
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reactions forming multiple products
48: [10:54:22] Testing reactions forming multiple products
48: smi: O=C1CNC(=O)CN1
48: smi: O=C1CNC(=O)CN1
48: 1: O=C1CNC(=O)CN1
48: 1: O=C1CNC(=O)CN1
48: 2: COOC
48: 2: COOC
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing salt handling
48: [10:54:22] Testing salt handling
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Daylight parser
48: [10:54:22] Testing Daylight parser
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing MDL parser
48: [10:54:22] Testing MDL parser
48: O=C1CNC(=O)CN1
48: O=C1CNC(=O)CN1
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Reaction Validation.
48: [10:54:22] Testing Reaction Validation.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48:   unmapped numbers are: 4 
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of query atoms in the products
48: [10:54:22] Testing handling of query atoms in the products
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Chirality handling
48: [10:54:22] Testing Chirality handling
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] F[C@](Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] FC(Cl)(Br)I
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Chirality handling (rxn)
48: [10:54:22] Testing Chirality handling (rxn)
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of double bond stereochemistry
48: [10:54:22] Testing handling of double bond stereochemistry
48: [10:54:22] [*]C(=O)/C=C/Cl
48: [10:54:22] [*]C(=O)/C=C/Cl
48: [10:54:22] C/C=C/Cl
48: [10:54:22] C/C=C/Cl
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1748846: bad bond orders in reaction products
48: [10:54:22] Testing sf.net Issue 1748846: bad bond orders in reaction products
48: [10:54:22] 1
48: [10:54:22] 1
48: [10:54:22] COCc1ccccc1
48: [10:54:22] COCc1ccccc1
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1804420: bad handling of query atoms in products.
48: [10:54:22] Testing sf.net Issue 1804420: bad handling of query atoms in products.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1882749: property handling in products.
48: [10:54:22] Testing sf.net Issue 1882749: property handling in products.
48: [10:54:22] atom 0 in product 0 has multiple charge specifications.
48: [10:54:22] atom 0 in product 0 has multiple charge specifications.
48:  mass: 15.0001
48:  mass: 15.0001
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing parser exception handling
48: [10:54:22] Testing parser exception handling
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 1920627: chirality flip in reactions.
48: [10:54:22] Testing sf.net Issue 1920627: chirality flip in reactions.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing property transfer in reactions.
48: [10:54:22] Testing property transfer in reactions.
48: Oc1ccccn1
48: Oc1ccccn1
48: Oc1ccc[nH]1
48: Oc1ccc[nH]1
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 2050085: recap failing on chiral molecules.
48: [10:54:22] Testing sf.net Issue 2050085: recap failing on chiral molecules.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing bond queries in the product.
48: [10:54:22] Testing bond queries in the product.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing sf.net Issue 2540021: bad handling of atoms with explicit Hs.
48: [10:54:22] Testing sf.net Issue 2540021: bad handling of atoms with explicit Hs.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing using dots in the products to remove bonds.
48: [10:54:22] Testing using dots in the products to remove bonds.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing pickling and depickling reactions.
48: [10:54:22] Testing pickling and depickling reactions.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing preservation of atom flags from rxn files.
48: [10:54:22] Testing preservation of atom flags from rxn files.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing transfer of conformer data from reactants->products.
48: [10:54:22] Testing transfer of conformer data from reactants->products.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing v3000 MDL parser
48: [10:54:22] Testing v3000 MDL parser
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction SMARTS writer.
48: [10:54:22] Testing reaction SMARTS writer.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction depictor.
48: [10:54:22] Testing reaction depictor.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RXN file writer.
48: [10:54:22] Testing RXN file writer.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reactant and product queries.
48: [10:54:22] Testing reactant and product queries.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Issue 3140490.
48: [10:54:22] Testing Issue 3140490.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing string replacement in parsing.
48: [10:54:22] Testing string replacement in parsing.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing getReactingAtoms() 1.
48: [10:54:22] Testing getReactingAtoms() 1.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing getReactingAtoms() 2
48: [10:54:22] Testing getReactingAtoms() 2
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in reactants1
48: [10:54:22] Testing grouping parens in reactants1
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1](=O)O.[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1](=O)O.[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1](=O)O).[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1](=O)O).[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:2])'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:2])'
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in reactants2
48: [10:54:22] Testing grouping parens in reactants2
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing use of _protected property on atoms.
48: [10:54:22] Testing use of _protected property on atoms.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing use of adding recursive queries to a reaction.
48: [10:54:22] Testing use of adding recursive queries to a reaction.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing loss of chirality on innocent atoms.
48: [10:54:22] Testing loss of chirality on innocent atoms.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of agents in reaction smarts
48: [10:54:22] Testing handling of agents in reaction smarts
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 233: chirality not preserved in nonmapped atoms
48: [10:54:22] Testing github 233: chirality not preserved in nonmapped atoms
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing Daylight parser
48: [10:54:22] Testing Daylight parser
48: [10:54:22] SMILES Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] SMILES Parse Error: syntax error for input: '[Q:1][C:2][C:3](=[O:4])[O:5]'
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 290: seg fault while parsing rxn
48: [10:54:22] Testing github 290: seg fault while parsing rxn
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction SMILES writer.
48: [10:54:22] Testing reaction SMILES writer.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing handling of reaction agents.
48: [10:54:22] Testing handling of reaction agents.
48: [10:54:22] reactant 2 has no mapped atoms.
48: [10:54:22] reactant 2 has no mapped atoms.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing the conversion of a molecule with Rxn role to a reaction and vice versa.
48: [10:54:22] Testing the conversion of a molecule with Rxn role to a reaction and vice versa.
48: [10:54:22] >> Atoms within one molecule have different RXN roles.
48: [10:54:22] >> Atoms within one molecule have different RXN roles.
48: [10:54:22] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
48: [10:54:22] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in products1
48: [10:54:22] Testing grouping parens in products1
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1][C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:1][C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '([C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1][C:2])'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1][C:2])'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1]).[C:2]'
48: [10:54:22] SMARTS Parse Error: syntax error for input: '[C:1]).[C:2]'
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing grouping parens in products2
48: [10:54:22] Testing grouping parens in products2
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RNX file parser with empty agent column
48: [10:54:22] Testing RNX file parser with empty agent column
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing RNX from patent data
48: [10:54:22] Testing RNX from patent data
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 6 found multiple times.
48: [10:54:22] product atom-mapping number 6 found multiple times.
48: [10:54:22] product atom-mapping number 7 found multiple times.
48: [10:54:22] product atom-mapping number 7 found multiple times.
48: [10:54:22] product atom-mapping number 8 found multiple times.
48: [10:54:22] product atom-mapping number 8 found multiple times.
48: [10:54:22] product atom-mapping number 12 found multiple times.
48: [10:54:22] product atom-mapping number 12 found multiple times.
48: [10:54:22] product atom-mapping number 9 found multiple times.
48: [10:54:22] product atom-mapping number 9 found multiple times.
48: [10:54:22] product atom-mapping number 10 found multiple times.
48: [10:54:22] product atom-mapping number 10 found multiple times.
48: [10:54:22] product atom-mapping number 11 found multiple times.
48: [10:54:22] product atom-mapping number 11 found multiple times.
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 0 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 1 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] reactant 3 has no mapped atoms.
48: [10:54:22] reactant atom-mapping number 19 found multiple times.
48: [10:54:22] reactant atom-mapping number 19 found multiple times.
48: [10:54:22] reactant atom-mapping number 25 found multiple times.
48: [10:54:22] reactant atom-mapping number 25 found multiple times.
48: [10:54:22] reactant atom-mapping number 20 found multiple times.
48: [10:54:22] reactant atom-mapping number 20 found multiple times.
48: [10:54:22] reactant atom-mapping number 21 found multiple times.
48: [10:54:22] reactant atom-mapping number 21 found multiple times.
48: [10:54:22] reactant atom-mapping number 22 found multiple times.
48: [10:54:22] reactant atom-mapping number 22 found multiple times.
48: [10:54:22] reactant atom-mapping number 23 found multiple times.
48: [10:54:22] reactant atom-mapping number 23 found multiple times.
48: [10:54:22] reactant atom-mapping number 24 found multiple times.
48: [10:54:22] reactant atom-mapping number 24 found multiple times.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products redundant atom mapping numbers in run_reactants
48: [10:54:22] Testing products redundant atom mapping numbers in run_reactants
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing reaction substructure matching w/o agents
48: [10:54:22] Testing reaction substructure matching w/o agents
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 5 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)O[C@](F)(Cl)Br
48: F[C@@](Cl)(Br)O[C@](F)(Cl)Br
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: F[C@@](Cl)(Br)O[C@@](F)(Cl)Br
48: F[C@@](Cl)(Br)O[C@@](F)(Cl)Br
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] Testing products with redundant atom mapping numbers and chirality
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 4 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48:   unmapped numbers are: 4 
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 3 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 2 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] product atom-mapping number 1 found multiple times.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 4 
48:   unmapped numbers are: 4 
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing old pickle file with new agent version
48: [10:54:22] Testing old pickle file with new agent version
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing introduction of new atoms with chirality
48: [10:54:22] Testing introduction of new atoms with chirality
48: [10:54:22] product atom-mapping number 6 not found in reactants.
48: [10:54:22] product atom-mapping number 6 not found in reactants.
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] F[C@](Cl)(I)N[C@H](Cl)Br
48: [10:54:22] F[C@](Cl)(I)N[C@H](Cl)Br
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 6 
48:   unmapped numbers are: 6 
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@@H:8]([CH3:9])[Cl:10]
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 7 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 8 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 9 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] product atom-mapping number 10 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 6 
48:   unmapped numbers are: 6 
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] C[C@H](F)CCC[C@@H](C)Cl
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing round trip molFileValue
48: [10:54:22] Testing round trip molFileValue
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing canonicatization of reactions
48: [10:54:22] Testing canonicatization of reactions
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github685: SMARTS reaction triggers invariant violation on chiral compounds
48: [10:54:22] Testing github685: SMARTS reaction triggers invariant violation on chiral compounds
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github975: Unnecessary warnings in rxn.validate()
48: [10:54:22] Testing github975: Unnecessary warnings in rxn.validate()
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing copy constructor
48: [10:54:22] Testing copy constructor
48: smi1 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: smi1 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: smi2 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: smi2 [CH3:1][CH2:2][C:3]([OH:4])([NH2:5])[Cl:6]>>[CH3:1][C:3]([CH3:2])([OH:4])[NH2:5].[ClH:6]
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 243: dummy labels copied into products
48: [10:54:22] Testing github 243: dummy labels copied into products
48: [10:54:22] 	done
48: [10:54:22] 	done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Testing github 1266: Reactions don't modify isotope unless chemical element is specified for the product
48: [10:54:22] Testing github 1266: Reactions don't modify isotope unless chemical element is specified for the product
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (unmapped Hs) 
48: [10:54:22] Tests sanitize reaction (unmapped Hs) 
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (mapped hs in react but not prod) 
48: [10:54:22] Tests sanitize reaction (mapped hs in react but not prod) 
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 7 8 9 10 11 12 13 14 15 16 
48:   unmapped numbers are: 7 8 9 10 11 12 13 14 15 16 
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests sanitize reaction (mapped hs in react and prod) 
48: [10:54:22] Tests sanitize reaction (mapped hs in react and prod) 
48: [10:54:22] product atom-mapping number 17 not found in reactants.
48: [10:54:22] product atom-mapping number 17 not found in reactants.
48: [10:54:22] product atom-mapping number 18 not found in reactants.
48: [10:54:22] product atom-mapping number 18 not found in reactants.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48: [10:54:22] mapped atoms in the reactants were not mapped in the products.
48:   unmapped numbers are: 12 
48:   unmapped numbers are: 12 
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: [10:54:22] Reaction has explicit hydrogens, reactants will need explicit hydrogens (addHs)
48: 
48: 
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests github1387: Bond from reactant not added to product
48: [10:54:22] Tests github1387: Bond from reactant not added to product
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] -------------------------------------
48: [10:54:22] -------------------------------------
48: [10:54:22] Tests github1544: ChemicalReaction code not calling setNoImplicit() when H counts are set
48: [10:54:22] Tests github1544: ChemicalReaction code not calling setNoImplicit() when H counts are set
48: [10:54:22] Done
48: [10:54:22] Done
48: [10:54:22] *******************************************************
48: [10:54:22] *******************************************************
 48/130 Test  #48: testReaction .......................   Passed    0.21 sec
 48/130 Test  #48: testReaction .......................   Passed    0.21 sec
test 49
test 49
        Start  49: testReactionFingerprints
        Start  49: testReactionFingerprints
49: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints
49: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testReactionFingerprints
49: Test timeout computed to be: 9.99988e+06
49: Test timeout computed to be: 9.99988e+06
49: [10:54:22] ********************************************************
49: [10:54:22] ********************************************************
49: [10:54:22] Testing Chemical Reaction Fingerprints 
49: [10:54:22] Testing Chemical Reaction Fingerprints 
49: [10:54:22] -------------------------------------
49: [10:54:22] -------------------------------------
49: [10:54:22]     Test Reaction StructuralFingerprint
49: [10:54:22]     Test Reaction StructuralFingerprint
49: [10:54:22] -------------------------------------
49: [10:54:22] -------------------------------------
49: [10:54:22]     Test Reaction DifferenceFingerprint
49: [10:54:22]     Test Reaction DifferenceFingerprint
49: [10:54:22] *******************************************************
49: [10:54:22] *******************************************************
 49/130 Test  #49: testReactionFingerprints ...........   Passed    0.03 sec
 49/130 Test  #49: testReactionFingerprints ...........   Passed    0.03 sec
test 50
test 50
        Start  50: testEnumeration
        Start  50: testEnumeration
50: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testEnumeration
50: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testEnumeration
50: Test timeout computed to be: 9.99988e+06
50: Test timeout computed to be: 9.99988e+06
50: 30000000000 30000000000
50: 30000000000 30000000000
50: 0,0 0
50: 0,0 0
50: 0,1 0
50: 0,1 0
50: 1,0 0
50: 1,0 0
50: 1,1 0
50: 1,1 0
50: 2,0 0
50: 2,0 0
50: 2,1 0
50: 2,1 0
50: [10:55:12] Removed 1 non matching reagents at template 0
50: [10:55:12] Removed 1 non matching reagents at template 0
50: [10:55:12] Removed 1 non matching reagents at template 1
50: [10:55:12] Removed 1 non matching reagents at template 1
50: [10:55:12] Removed 1 non matching reagents at template 2
50: [10:55:12] Removed 1 non matching reagents at template 2
50: [10:55:12] -------------------------------------
50: [10:55:12] -------------------------------------
50: [10:55:12] Testing github #1657: EnumerateLibrary with initFromString called twice doesn't clear the reaction
50: [10:55:12] Testing github #1657: EnumerateLibrary with initFromString called twice doesn't clear the reaction
50: [10:55:13] 	done
50: [10:55:13] 	done
 50/130 Test  #50: testEnumeration ....................   Passed   50.19 sec
 50/130 Test  #50: testEnumeration ....................   Passed   50.19 sec
test 51
test 51
        Start  51: pyChemReactions
        Start  51: pyChemReactions
51: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py"
51: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py"
51: Test timeout computed to be: 9.99988e+06
51: Test timeout computed to be: 9.99988e+06
51: .......[10:55:13] mapped atoms in the reactants were not mapped in the products.
51: .......[10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51:   unmapped numbers are: 3 
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51:   unmapped numbers are: 3 
51: .[10:55:13] mapped atoms in the reactants were not mapped in the products.
51: .[10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 3 
51:   unmapped numbers are: 3 
51: ..[10:55:13] reactant 2 has no mapped atoms.
51: ..[10:55:13] reactant 2 has no mapped atoms.
51: [10:55:13] reactant 2 has no mapped atoms.
51: [10:55:13] reactant 2 has no mapped atoms.
51: [10:55:13] product 1 has no mapped atoms.
51: [10:55:13] product 1 has no mapped atoms.
51: ********************************************
51: ********************************************
51: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testData/AmideBond.rxn
51: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/testData/AmideBond.rxn
51: <rdkit.Chem.rdChemReactions.ChemicalReaction object at 0x1279a60>
51: <rdkit.Chem.rdChemReactions.ChemicalReaction object at 0x1279a60>
51: ........[10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])Q'
51: ........[10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])Q'
51: [10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])[N:3]Q'
51: [10:55:13] SMARTS Parse Error: syntax error for input: '[C:1](=[O:2])[N:3]Q'
51: .[10:55:13] reactant atom-mapping number 1 found multiple times.
51: .[10:55:13] reactant atom-mapping number 1 found multiple times.
51: [10:55:13] product atom-mapping number 2 not found in reactants.
51: [10:55:13] product atom-mapping number 2 not found in reactants.
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51: [10:55:13] mapped atoms in the reactants were not mapped in the products.
51:   unmapped numbers are: 4 
51:   unmapped numbers are: 4 
51: [10:55:13] product atom-mapping number 5 not found in reactants.
51: [10:55:13] product atom-mapping number 5 not found in reactants.
51: ......[10:55:13] reaction has no reactants
51: ......[10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] reaction has no products
51: [10:55:13] initialization failed
51: [10:55:13] initialization failed
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] reaction has no products
51: .[10:55:13] reaction has no reactants
51: .[10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] reaction has no products
51: [10:55:13] initialization failed
51: [10:55:13] initialization failed
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no reactants
51: [10:55:13] reaction has no products
51: [10:55:13] reaction has no products
51: .
51: .
51: ----------------------------------------------------------------------
51: ----------------------------------------------------------------------
51: Ran 27 tests in 0.052s
51: Ran 27 tests in 0.052s
51: 
51: 
51: OK
51: OK
 51/130 Test  #51: pyChemReactions ....................   Passed    0.55 sec
 51/130 Test  #51: pyChemReactions ....................   Passed    0.55 sec
test 52
test 52
        Start  52: pyChemReactionEnumerations
        Start  52: pyChemReactionEnumerations
52: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py"
52: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testEnumerations.py"
52: Test timeout computed to be: 9.99988e+06
52: Test timeout computed to be: 9.99988e+06
52: [10:55:13] == testCartesianProduct
52: [10:55:13] == testCartesianProduct
52: True
52: True
52: .[10:55:13] == testEnumerateLibrary
52: .[10:55:13] == testEnumerateLibrary
52: == CartesianProductStrategy CartesianProductStrategy
52: == CartesianProductStrategy CartesianProductStrategy
52: ..[10:55:13] == testRGroupState
52: ..[10:55:13] == testRGroupState
52: .[10:55:13] == testRandomEnumerateAllBBsLibrary
52: .[10:55:13] == testRandomEnumerateAllBBsLibrary
52: ** [1, 1]
52: ** [1, 1]
52: ** [0, 2]
52: ** [0, 2]
52: ** [1, 0]
52: ** [1, 0]
52: .[10:55:13] == testRandomEnumerateLibrary
52: .[10:55:13] == testRandomEnumerateLibrary
52: .[10:55:13] == testRandomSample
52: .[10:55:13] == testRandomSample
52: 197 out of 300
52: 197 out of 300
52: 0 6 out of 10
52: 0 6 out of 10
52: 1 3 out of 5
52: 1 3 out of 5
52: 2 4 out of 6
52: 2 4 out of 6
52: .[10:55:13] == testRandomSampleAllBBs
52: .[10:55:13] == testRandomSampleAllBBs
52: 198 out of 300
52: 198 out of 300
52: 0 10 out of 10
52: 0 10 out of 10
52: 1 5 out of 5
52: 1 5 out of 5
52: 2 6 out of 6
52: 2 6 out of 6
52: .[10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: .[10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: [10:55:13]  deprecated -- please use MatchOnlyAtRgroupsAdjustParams instead
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 0
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 1
52: [10:55:13] Removed 1 non matching reagents at template 2
52: [10:55:13] Removed 1 non matching reagents at template 2
52: .[10:55:13] == testRemoveBadMatches
52: .[10:55:13] == testRemoveBadMatches
52: [10:55:13] Removed 3 non matching reagents at template 0
52: [10:55:13] Removed 3 non matching reagents at template 0
52: [10:55:13] Removed 4 non matching reagents at template 1
52: [10:55:13] Removed 4 non matching reagents at template 1
52: .[10:55:13] == testTimings
52: .[10:55:13] == testTimings
52: .
52: .
52: ----------------------------------------------------------------------
52: ----------------------------------------------------------------------
52: Ran 11 tests in 0.990s
52: Ran 11 tests in 0.990s
52: 
52: 
52: OK
52: OK
52: <rdkit.Chem.rdChemReactions.CartesianProductStrategy object at 0x1310f18> Skipped 10000000 in 0.0417819023132 seconds
52: <rdkit.Chem.rdChemReactions.CartesianProductStrategy object at 0x1310f18> Skipped 10000000 in 0.0417819023132 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleStrategy object at 0x1310ec0> Skipped 10000000 in 0.413046121597 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleStrategy object at 0x1310ec0> Skipped 10000000 in 0.413046121597 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleAllBBsStrategy object at 0x1310db8> Skipped 10000000 in 0.322587966919 seconds
52: <rdkit.Chem.rdChemReactions.RandomSampleAllBBsStrategy object at 0x1310db8> Skipped 10000000 in 0.322587966919 seconds
 52/130 Test  #52: pyChemReactionEnumerations .........   Passed    1.12 sec
 52/130 Test  #52: pyChemReactionEnumerations .........   Passed    1.12 sec
test 53
test 53
        Start  53: pyChemReactionSanitize
        Start  53: pyChemReactionSanitize
53: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testSanitize.py"
53: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemReactions/Wrap/testSanitize.py"
53: Test timeout computed to be: 9.99988e+06
53: Test timeout computed to be: 9.99988e+06
53: ********************************************
53: ********************************************
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: V    2 [*:1]
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    1 [*:2]
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    1 [*:1]
53: V    2 [*:2]
53: V    2 [*:2]
53: M  END
53: M  END
53: 
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: V    2 [*:1]
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    1 [*:2]
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    1 [*:1]
53: V    2 [*:2]
53: V    2 [*:2]
53: M  END
53: M  END
53: 
53: 
53: ********************************************
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: V    2 *
53: V    2 *
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: M  RGP  1   1   2
53: V    1 *
53: V    1 *
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: M  RGP  2   1   1   2   2
53: V    1 *
53: V    1 *
53: V    2 *
53: V    2 *
53: M  END
53: M  END
53: 
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: V    2 [*:1]
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    1 [*:2]
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    1 [*:1]
53: V    2 [*:2]
53: V    2 [*:2]
53: M  END
53: M  END
53: 
53: 
53: ********************************************
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  END
53: M  END
53: 
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    -3.9875   -7.4667    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  1   2   1
53: M  RGP  1   2   1
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: V    2 [*:1]
53: V    2 [*:1]
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     3.4375   -7.7917    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: M  RGP  1   1   2
53: M  RGP  1   1   2
53: V    1 [*:2]
53: V    1 [*:2]
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.2667   -7.3417    0.0000 R#  0  0  0  0  0  0  0  0  0  1  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:    11.9811   -6.9292    0.0000 R#  0  0  0  0  0  0  0  0  0  2  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  RGP  2   1   1   2   2
53: M  RGP  2   1   1   2   2
53: V    1 [*:1]
53: V    1 [*:1]
53: V    2 [*:2]
53: V    2 [*:2]
53: M  END
53: M  END
53: 
53: 
53: ********************************************
53: ********************************************
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: $RXN
53: $RXN
53: 
53: 
53:       RDKit
53:       RDKit
53: 
53: 
53:   2  1
53:   2  1
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.2730   -7.0542    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    -3.9875   -7.4667    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: V    1 halogen.bromine.aromatic
53: V    1 halogen.bromine.aromatic
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:   4  3  0  0  0  0  0  0  0  0999 V2000
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     3.4375   -7.7917    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -7.3792    0.0000 B   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.1520   -6.5542    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:     4.8664   -7.7917    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
53:   2  3  1  0
53:   2  3  1  0
53:   1  2  1  0
53:   1  2  1  0
53:   2  4  1  0
53:   2  4  1  0
53: V    2 boronicacid
53: V    2 boronicacid
53: M  END
53: M  END
53: $MOL
53: $MOL
53: 
53: 
53:      RDKit          2D
53:      RDKit          2D
53: 
53: 
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:   2  1  0  0  0  0  0  0  0  0999 V2000
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.2667   -7.3417    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:    11.9811   -6.9292    0.0000 R   0  0  0  0  0  0  0  0  0  0  0  0
53:   1  2  1  0
53:   1  2  1  0
53: M  END
53: M  END
53: 
53: 
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 0 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] reactant 1 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: [10:55:14] product 0 has no mapped atoms.
53: ..
53: ..
53: ----------------------------------------------------------------------
53: ----------------------------------------------------------------------
53: Ran 2 tests in 0.015s
53: Ran 2 tests in 0.015s
53: 
53: 
53: OK
53: OK
53: $RXN Failed
53: $RXN Failed
 53/130 Test  #53: pyChemReactionSanitize .............   Passed    0.16 sec
 53/130 Test  #53: pyChemReactionSanitize .............   Passed    0.16 sec
test 54
test 54
        Start  54: testChemTransforms
        Start  54: testChemTransforms
54: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms
54: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ChemTransforms/testChemTransforms
54: Test timeout computed to be: 9.99988e+06
54: Test timeout computed to be: 9.99988e+06
54: [10:55:14] ********************************************************
54: [10:55:14] ********************************************************
54: [10:55:14] Testing Chemical Transforms 
54: [10:55:14] Testing Chemical Transforms 
54: [10:55:14] -------------------------------------
54: [10:55:14] -------------------------------------
54: [10:55:14] Testing deleteSubstruct
54: [10:55:14] Testing deleteSubstruct
54: 1 smi: CC
54: 1 smi: CC
54: 1 smi: CC
54: 1 smi: CC
54: 2 smi: CCO[C@H](N)P
54: 2 smi: CCO[C@H](N)P
54: 2 smi: CC
54: 2 smi: CC
54: [10:55:14] 	done
54: [10:55:14] 	done
54: [10:55:14] -------------------------------------
54: [10:55:14] -------------------------------------
54: [10:55:14] Testing replaceSubstruct
54: [10:55:14] Testing replaceSubstruct
54: replaceSub smi1:CCP(CC)[C@@H](N)O
54: replaceSub smi1:CCP(CC)[C@@H](N)O
54: replaceSub smi1:CCNCC
54: replaceSub smi1:CCNCC
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] More testing of replaceSubstruct
54: [10:55:15] More testing of replaceSubstruct
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceSidechains
54: [10:55:15] Testing replaceSidechains
54: sidechains chiral=true smi1;;; [1*]P([2*])[C@H](N)O
54: sidechains chiral=true smi1;;; [1*]P([2*])[C@H](N)O
54: sidechains chiral=false smi1;;; [1*]P([2*])[C@H](N)O
54: sidechains chiral=false smi1;;; [1*]P([2*])[C@H](N)O
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore
54: [10:55:15] Testing replaceCore
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore with labels
54: [10:55:15] Testing replaceCore with labels
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing a former crash in replaceCore
54: [10:55:15] Testing a former crash in replaceCore
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing that atom positions are correctly copied by replaceCore
54: [10:55:15] Testing that atom positions are correctly copied by replaceCore
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore with a matchvect
54: [10:55:15] Testing replaceCore with a matchvect
54: [10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -------------------------------------
54: [10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -- caught error[10:55:15] -------------------------------------
54: [10:55:15] Testing murcko decomposition
54: [10:55:15] Testing murcko decomposition
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing replaceCore requiring dummy atoms
54: [10:55:15] Testing replaceCore requiring dummy atoms
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing that atom positions are correctly copied by replaceSubstructs
54: [10:55:15] Testing that atom positions are correctly copied by replaceSubstructs
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing handling of substituted non-carbon aromatic atoms
54: [10:55:15] Testing handling of substituted non-carbon aromatic atoms
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing combination of molecules
54: [10:55:15] Testing combination of molecules
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing adding recursive queries to a molecule
54: [10:55:15] Testing adding recursive queries to a molecule
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing parsing query definition file
54: [10:55:15] Testing parsing query definition file
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing sf.net issue 275: Murcko decomposition with chiral atoms
54: [10:55:15] Testing sf.net issue 275: Murcko decomposition with chiral atoms
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnBonds
54: [10:55:15] Testing fragmentOnBonds
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnBRICSBonds
54: [10:55:15] Testing fragmentOnBRICSBonds
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing fragmentOnSomeBonds
54: [10:55:15] Testing fragmentOnSomeBonds
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 429: fragmentOnSomeBonds() should update implicit H count on aromatic heteroatoms when addDummies is False
54: [10:55:15] Testing github issue 429: fragmentOnSomeBonds() should update implicit H count on aromatic heteroatoms when addDummies is False
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 430: fragmentOnSomeBonds() crashes if bond list is empty
54: [10:55:15] Testing github issue 430: fragmentOnSomeBonds() crashes if bond list is empty
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] -------------------------------------
54: [10:55:15] -------------------------------------
54: [10:55:15] Testing github issue 511: FragmentOnBonds() producing incorrect chirality
54: [10:55:15] Testing github issue 511: FragmentOnBonds() producing incorrect chirality
54: CC[C@@](C)(N)OC
54: CC[C@@](C)(N)OC
54: [10:55:15] 	done
54: [10:55:15] 	done
54: [10:55:15] *******************************************************
54: [10:55:15] *******************************************************
 54/130 Test  #54: testChemTransforms .................   Passed    0.21 sec
 54/130 Test  #54: testChemTransforms .................   Passed    0.21 sec
test 55
test 55
        Start  55: testSubgraphs1
        Start  55: testSubgraphs1
55: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs1
55: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs1
55: Test timeout computed to be: 9.99988e+06
55: Test timeout computed to be: 9.99988e+06
55: -----------------------
55: -----------------------
55:  Subgraph retrieval
55:  Subgraph retrieval
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  testSubgraphs2a
55:  testSubgraphs2a
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  testSubgraphs2
55:  testSubgraphs2
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  Path retrieval
55:  Path retrieval
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  Path retrieval2
55:  Path retrieval2
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  Unique Subgraph retrieval
55:  Unique Subgraph retrieval
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  testUniqueSubgraphs2
55:  testUniqueSubgraphs2
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  testRootedSubgraphs
55:  testRootedSubgraphs
55: Finished
55: Finished
55: -----------------------
55: -----------------------
55:  testRootedPaths
55:  testRootedPaths
55: Finished
55: Finished
 55/130 Test  #55: testSubgraphs1 .....................   Passed    0.28 sec
 55/130 Test  #55: testSubgraphs1 .....................   Passed    0.28 sec
test 56
test 56
        Start  56: testSubgraphs2
        Start  56: testSubgraphs2
56: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs2
56: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Subgraphs/testSubgraphs2
56: Test timeout computed to be: 9.99988e+06
56: Test timeout computed to be: 9.99988e+06
56: -----------------------
56: -----------------------
56:  Test1: pathToSubmol
56:  Test1: pathToSubmol
56: Finished
56: Finished
56: -----------------------
56: -----------------------
56:  Test2: Atom Environments
56:  Test2: Atom Environments
56: Finished
56: Finished
56: -----------------------
56: -----------------------
56:  Testing github Issue103: stereochemistry and pathToSubmol
56:  Testing github Issue103: stereochemistry and pathToSubmol
56: Finished
56: Finished
 56/130 Test  #56: testSubgraphs2 .....................   Passed    0.02 sec
 56/130 Test  #56: testSubgraphs2 .....................   Passed    0.02 sec
test 57
test 57
        Start  57: filterCatalogTest
        Start  57: filterCatalogTest
57: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filterCatalogTest
57: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/filterCatalogTest
57: Test timeout computed to be: 9.99988e+06
57: Test timeout computed to be: 9.99988e+06
57: [10:55:15] -----------------------
57: [10:55:15] -----------------------
57:  Testing the filter catalog 
57:  Testing the filter catalog 
57: Warning: molecule failed filter 
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason hzone_phenol_A(479)
57: Warning: molecule failed filter: reason hzone_phenol_A(479)
57: v = { 
57: v = { 
57: 	0,23},
57: 	0,23},
57: 	1,22},
57: 	1,22},
57: 	2,20},
57: 	2,20},
57: 	3,19},
57: 	3,19},
57: 	4,25},
57: 	4,25},
57: 	5,24},
57: 	5,24},
57: 	6,18},
57: 	6,18},
57: 	7,17},
57: 	7,17},
57: 	8,16},
57: 	8,16},
57: 	9,21},
57: 	9,21},
57: }
57: }
57: match = { 
57: match = { 
57: 	0,23},
57: 	0,23},
57: 	1,22},
57: 	1,22},
57: 	2,20},
57: 	2,20},
57: 	3,19},
57: 	3,19},
57: 	4,25},
57: 	4,25},
57: 	5,24},
57: 	5,24},
57: 	6,18},
57: 	6,18},
57: 	7,17},
57: 	7,17},
57: 	8,16},
57: 	8,16},
57: 	9,21},
57: 	9,21},
57: }
57: }
57: Warning: molecule failed filter 
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason cyano_imine_B(17)
57: Warning: molecule failed filter: reason cyano_imine_B(17)
57: v = { 
57: v = { 
57: 	0,11},
57: 	0,11},
57: 	1,12},
57: 	1,12},
57: 	2,13},
57: 	2,13},
57: 	3,14},
57: 	3,14},
57: 	4,15},
57: 	4,15},
57: 	5,10},
57: 	5,10},
57: 	6,9},
57: 	6,9},
57: 	7,8},
57: 	7,8},
57: 	8,7},
57: 	8,7},
57: 	9,6},
57: 	9,6},
57: 	10,5},
57: 	10,5},
57: 	11,17},
57: 	11,17},
57: 	12,16},
57: 	12,16},
57: }
57: }
57: match = { 
57: match = { 
57: 	0,11},
57: 	0,11},
57: 	1,12},
57: 	1,12},
57: 	2,13},
57: 	2,13},
57: 	3,14},
57: 	3,14},
57: 	4,15},
57: 	4,15},
57: 	5,10},
57: 	5,10},
57: 	6,9},
57: 	6,9},
57: 	7,8},
57: 	7,8},
57: 	8,7},
57: 	8,7},
57: 	9,6},
57: 	9,6},
57: 	10,5},
57: 	10,5},
57: 	11,17},
57: 	11,17},
57: 	12,16},
57: 	12,16},
57: }
57: }
57: Warning: molecule failed filter 
57: Warning: molecule failed filter 
57: Warning: molecule failed filter: reason keto_keto_gamma(5)
57: Warning: molecule failed filter: reason keto_keto_gamma(5)
57: v = { 
57: v = { 
57: 	0,0},
57: 	0,0},
57: 	1,1},
57: 	1,1},
57: 	2,2},
57: 	2,2},
57: 	3,4},
57: 	3,4},
57: 	4,5},
57: 	4,5},
57: 	5,6},
57: 	5,6},
57: 	6,7},
57: 	6,7},
57: 	7,8},
57: 	7,8},
57: 	8,9},
57: 	8,9},
57: 	9,14},
57: 	9,14},
57: 	10,15},
57: 	10,15},
57: 	11,16},
57: 	11,16},
57: }
57: }
57: match = { 
57: match = { 
57: 	0,0},
57: 	0,0},
57: 	1,1},
57: 	1,1},
57: 	2,2},
57: 	2,2},
57: 	3,4},
57: 	3,4},
57: 	4,5},
57: 	4,5},
57: 	5,6},
57: 	5,6},
57: 	6,7},
57: 	6,7},
57: 	7,8},
57: 	7,8},
57: 	8,9},
57: 	8,9},
57: 	9,14},
57: 	9,14},
57: 	10,15},
57: 	10,15},
57: 	11,16},
57: 	11,16},
57: }
57: }
57: [10:55:15] Finished
57: [10:55:15] Finished
 57/130 Test  #57: filterCatalogTest ..................   Passed    0.12 sec
 57/130 Test  #57: filterCatalogTest ..................   Passed    0.12 sec
test 58
test 58
        Start  58: pyFilterCatalog
        Start  58: pyFilterCatalog
58: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rough_test.py"
58: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FilterCatalog/Wrap/rough_test.py"
58: Test timeout computed to be: 9.99988e+06
58: Test timeout computed to be: 9.99988e+06
58: [10:55:16] FilterMatcherBase::Clone is deprecated, use copy instead
58: [10:55:16] FilterMatcherBase::Clone is deprecated, use copy instead
58: (Five aromatic carbons And (Not any of Five aromatic carbons))
58: (Five aromatic carbons And (Not any of Five aromatic carbons))
58: (Five aromatic carbons Or (Not any of Five aromatic carbons))
58: (Five aromatic carbons Or (Not any of Five aromatic carbons))
58: (Not (Five aromatic carbons And (Not any of Five aromatic carbons)))
58: (Not (Five aromatic carbons And (Not any of Five aromatic carbons)))
58: ********************************************
58: ********************************************
58: Testing: PAINS_A 2
58: Testing: PAINS_A 2
58: ********************************************
58: ********************************************
58: Testing: PAINS_B 4
58: Testing: PAINS_B 4
58: ********************************************
58: ********************************************
58: Testing: PAINS_C 8
58: Testing: PAINS_C 8
58: ********************************************
58: ********************************************
58: Testing: PAINS 14
58: Testing: PAINS 14
58: .....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: .....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: ....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: ....[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: (Not FilterMatcher)
58: (Not FilterMatcher)
58: .[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: .[10:55:17] FilterMatcherBase::Clone is deprecated, use copy instead
58: ........
58: ........
58: ----------------------------------------------------------------------
58: ----------------------------------------------------------------------
58: Ran 18 tests in 0.733s
58: Ran 18 tests in 0.733s
58: 
58: 
58: OK
58: OK
58: Bar
58: Bar
58: Count 1
58: Count 1
58: ********************************************
58: ********************************************
58: set(['Cl,Br,I'])
58: set(['Cl,Br,I'])
 58/130 Test  #58: pyFilterCatalog ....................   Passed    1.65 sec
 58/130 Test  #58: pyFilterCatalog ....................   Passed    1.65 sec
test 59
test 59
        Start  59: testFragCatalog
        Start  59: testFragCatalog
59: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/testFragCatalog
59: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/testFragCatalog
59: Test timeout computed to be: 9.99988e+06
59: Test timeout computed to be: 9.99988e+06
59:  21
59:  21
59: [10:55:17] ----- Test 1
59: [10:55:17] ----- Test 1
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test 2
59: [10:55:17] ----- Test 2
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test 3
59: [10:55:17] ----- Test 3
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test Issue 115
59: [10:55:17] ----- Test Issue 115
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
59: [10:55:17] ----- Test Issue 117
59: [10:55:17] ----- Test Issue 117
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
59: [10:55:17] ---- Test Issue294
59: [10:55:17] ---- Test Issue294
59:   Watch memory usage.
59:   Watch memory usage.
59: [10:55:17] ---- Done
59: [10:55:17] ---- Done
 59/130 Test  #59: testFragCatalog ....................   Passed    0.57 sec
 59/130 Test  #59: testFragCatalog ....................   Passed    0.57 sec
test 60
test 60
        Start  60: pyFragCatalog
        Start  60: pyFragCatalog
60: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rough_test.py"
60: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FragCatalog/Wrap/rough_test.py"
60: Test timeout computed to be: 9.99988e+06
60: Test timeout computed to be: 9.99988e+06
60: .........
60: .........
60: ----------------------------------------------------------------------
60: ----------------------------------------------------------------------
60: Ran 9 tests in 0.056s
60: Ran 9 tests in 0.056s
60: 
60: 
60: OK
60: OK
 60/130 Test  #60: pyFragCatalog ......................   Passed    0.20 sec
 60/130 Test  #60: pyFragCatalog ......................   Passed    0.20 sec
test 61
test 61
        Start  61: testDescriptors
        Start  61: testDescriptors
61: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testDescriptors
61: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testDescriptors
61: Test timeout computed to be: 9.99988e+06
61: Test timeout computed to be: 9.99988e+06
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Crippen parameter acquisition.
61: [10:55:17]     Test Crippen parameter acquisition.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Crippen calculation.
61: [10:55:17]     Test Crippen calculation.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Issue262: problems with Crippen calculation from pickles.
61: [10:55:17]     Test Issue262: problems with Crippen calculation from pickles.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test AMW calculation.
61: [10:55:17]     Test AMW calculation.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Exact MW calculation.
61: [10:55:17]     Test Exact MW calculation.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test Labute ASA descriptors.
61: [10:55:17]     Test Labute ASA descriptors.
61: [10:55:17]   done
61: [10:55:17]   done
61: [10:55:17] -------------------------------------
61: [10:55:17] -------------------------------------
61: [10:55:17]     Test TPSA descriptors.
61: [10:55:17]     Test TPSA descriptors.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Lipinski parameters.
61: [10:55:18]     Test Lipinski parameters.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test VSA descriptors.
61: [10:55:18]     Test VSA descriptors.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test molecular formula calculation.
61: [10:55:18]     Test molecular formula calculation.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Issue 3415534.
61: [10:55:18]     Test Issue 3415534.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test Issue3433771: Bad definition for Crippen atom type O11.
61: [10:55:18]     Test Issue3433771: Bad definition for Crippen atom type O11.
61: [10:55:18]   done
61: [10:55:18]   done
61: [10:55:18] -------------------------------------
61: [10:55:18] -------------------------------------
61: [10:55:18]     Test multithreading
61: [10:55:18]     Test multithreading
61: reading molecules
61: reading molecules
61: processing
61: processing
61:  launch :0
61:  launch :0
61:  launch :1
61:  launch :1
61:  launch :2
61:  launch :2
61:  launch :3
61:  launch :3
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Issue252: Bad definitions for Crippen atom types.
61: [10:55:22]     Test Issue252: Bad definitions for Crippen atom types.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of ChiVs.
61: [10:55:22]     Test calculation of ChiVs.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of ChiNs.
61: [10:55:22]     Test calculation of ChiNs.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of HallKierAlpha.
61: [10:55:22]     Test calculation of HallKierAlpha.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa1.
61: [10:55:22]     Test calculation of Kappa1.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa2.
61: [10:55:22]     Test calculation of Kappa2.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of Kappa3.
61: [10:55:22]     Test calculation of Kappa3.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Crippen atom type calculations.
61: [10:55:22]     Test Crippen atom type calculations.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test ring descriptors
61: [10:55:22]     Test ring descriptors
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test other count descriptors.
61: [10:55:22]     Test other count descriptors.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test MQN
61: [10:55:22]     Test MQN
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test GitHub Issue 56.
61: [10:55:22]     Test GitHub Issue 56.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github92: Bad Crippen atom type for pyrrole H.
61: [10:55:22]     Test Github92: Bad Crippen atom type for pyrrole H.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github362: order dependence  in Kier-Hall descriptors.
61: [10:55:22]     Test Github362: order dependence  in Kier-Hall descriptors.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test calculation of spiro and bridgehead counts.
61: [10:55:22]     Test calculation of spiro and bridgehead counts.
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github694: ExactMolWt ignoring the mass of the electron
61: [10:55:22]     Test Github694: ExactMolWt ignoring the mass of the electron
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Testing Properties and KitchenSink
61: [10:55:22]     Testing Properties and KitchenSink
61: [10:55:22] ---Caught keyerror (bad property name)---
61: [10:55:22] ---Caught keyerror (bad property name)---
61: [10:55:22] ---Caught stereo value error---
61: [10:55:22] ---Caught stereo value error---
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test USR Descriptor
61: [10:55:22]     Test USR Descriptor
61: [10:55:22]   done
61: [10:55:22]   done
61: [10:55:22] -------------------------------------
61: [10:55:22] -------------------------------------
61: [10:55:22]     Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required
61: [10:55:22]     Test Github #1702: AUTOCORR2D.h not installed unless RDK_BUILD_DESCRIPTORS3D but is required
61: [10:55:22]   done
61: [10:55:22]   done
 61/130 Test  #61: testDescriptors ....................   Passed    4.97 sec
 61/130 Test  #61: testDescriptors ....................   Passed    4.97 sec
test 62
test 62
        Start  62: testAUTOCORR2D
        Start  62: testAUTOCORR2D
62: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D
62: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR2D
62: Test timeout computed to be: 9.99988e+06
62: Test timeout computed to be: 9.99988e+06
62: [10:55:22] ----------------------------
62: [10:55:22] ----------------------------
62: start test autocorr2D
62: start test autocorr2D
62: [10:55:23]   done
62: [10:55:23]   done
 62/130 Test  #62: testAUTOCORR2D .....................   Passed    0.42 sec
 62/130 Test  #62: testAUTOCORR2D .....................   Passed    0.42 sec
test 63
test 63
        Start  63: testPBF
        Start  63: testPBF
63: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF
63: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testPBF
63: Test timeout computed to be: 9.99988e+06
63: Test timeout computed to be: 9.99988e+06
63: [10:55:23] -------------------------------------
63: [10:55:23] -------------------------------------
63: [10:55:23]     Basic PBF tests.
63: [10:55:23]     Basic PBF tests.
63: [10:55:23]   done
63: [10:55:23]   done
63: [10:55:23] -------------------------------------
63: [10:55:23] -------------------------------------
63: [10:55:23]     PBF edge cases.
63: [10:55:23]     PBF edge cases.
63: [10:55:23]   done
63: [10:55:23]   done
 63/130 Test  #63: testPBF ............................   Passed    0.18 sec
 63/130 Test  #63: testPBF ............................   Passed    0.18 sec
test 64
test 64
        Start  64: testRDF
        Start  64: testRDF
64: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF
64: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testRDF
64: Test timeout computed to be: 9.99988e+06
64: Test timeout computed to be: 9.99988e+06
64: =>start test rdf
64: =>start test rdf
64: [10:55:24] test on : 365 molecules done
64: [10:55:24] test on : 365 molecules done
 64/130 Test  #64: testRDF ............................   Passed    0.48 sec
 64/130 Test  #64: testRDF ............................   Passed    0.48 sec
test 65
test 65
        Start  65: testMORSE
        Start  65: testMORSE
65: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE
65: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testMORSE
65: Test timeout computed to be: 9.99988e+06
65: Test timeout computed to be: 9.99988e+06
65: =>start test MORSE
65: =>start test MORSE
65: =>read file
65: =>read file
65: [10:55:24] test on : 365 molecules done
65: [10:55:24] test on : 365 molecules done
 65/130 Test  #65: testMORSE ..........................   Passed    0.75 sec
 65/130 Test  #65: testMORSE ..........................   Passed    0.75 sec
test 66
test 66
        Start  66: test3D
        Start  66: test3D
66: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test3D
66: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/test3D
66: Test timeout computed to be: 9.99988e+06
66: Test timeout computed to be: 9.99988e+06
66: [10:55:24] -------------------------------------
66: [10:55:24] -------------------------------------
66: [10:55:24]     Basic PMI tests.
66: [10:55:24]     Basic PMI tests.
66: [10:55:24]   done
66: [10:55:24]   done
66: [10:55:24] -------------------------------------
66: [10:55:24] -------------------------------------
66: [10:55:24]     More PMI/NPR tests.
66: [10:55:24]     More PMI/NPR tests.
66: [10:55:24]   done
66: [10:55:24]   done
66: [10:55:24] -------------------------------------
66: [10:55:24] -------------------------------------
66: [10:55:24]     Basic NPR tests.
66: [10:55:24]     Basic NPR tests.
66: [10:55:25]   done
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25] -------------------------------------
66: [10:55:25]     PMI edge cases.
66: [10:55:25]     PMI edge cases.
66: [10:55:25]   done
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25] -------------------------------------
66: [10:55:25]     NPR edge cases.
66: [10:55:25]     NPR edge cases.
66: [10:55:25]   done
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25] -------------------------------------
66: [10:55:25]     3D descriptors.
66: [10:55:25]     3D descriptors.
66: [10:55:25]   done
66: [10:55:25]   done
66: [10:55:25] -------------------------------------
66: [10:55:25] -------------------------------------
66: [10:55:25]     3D descriptor edge cases.
66: [10:55:25]     3D descriptor edge cases.
66: [10:55:25]   done
66: [10:55:25]   done
 66/130 Test  #66: test3D .............................   Passed    0.40 sec
 66/130 Test  #66: test3D .............................   Passed    0.40 sec
test 67
test 67
        Start  67: testWHIM
        Start  67: testWHIM
67: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM
67: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testWHIM
67: Test timeout computed to be: 9.99988e+06
67: Test timeout computed to be: 9.99988e+06
67: =>start test WHIM
67: =>start test WHIM
67: [10:55:25] test on : 365 molecules done
67: [10:55:25] test on : 365 molecules done
 67/130 Test  #67: testWHIM ...........................   Passed    0.32 sec
 67/130 Test  #67: testWHIM ...........................   Passed    0.32 sec
test 68
test 68
        Start  68: testGETAWAY
        Start  68: testGETAWAY
68: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY
68: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testGETAWAY
68: Test timeout computed to be: 9.99988e+06
68: Test timeout computed to be: 9.99988e+06
68: =>start test GETAWAY
68: =>start test GETAWAY
68: [10:55:26] test on : 365 molecules done
68: [10:55:26] test on : 365 molecules done
 68/130 Test  #68: testGETAWAY ........................   Passed    1.19 sec
 68/130 Test  #68: testGETAWAY ........................   Passed    1.19 sec
test 69
test 69
        Start  69: testAUTOCORR3D
        Start  69: testAUTOCORR3D
69: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D
69: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/testAUTOCORR3D
69: Test timeout computed to be: 9.99988e+06
69: Test timeout computed to be: 9.99988e+06
69: =>start test autocorr3D
69: =>start test autocorr3D
69: [10:55:26] test on : 365 molecules done
69: [10:55:26] test on : 365 molecules done
 69/130 Test  #69: testAUTOCORR3D .....................   Passed    0.30 sec
 69/130 Test  #69: testAUTOCORR3D .....................   Passed    0.30 sec
test 70
test 70
        Start  70: pyMolDescriptors
        Start  70: pyMolDescriptors
70: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py"
70: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py"
70: Test timeout computed to be: 9.99988e+06
70: Test timeout computed to be: 9.99988e+06
70: .......................
70: .......................
70: ----------------------------------------------------------------------
70: ----------------------------------------------------------------------
70: exactmw 78.046950192
70: exactmw 78.046950192
70: lipinskiHBA 0.0
70: lipinskiHBA 0.0
70: lipinskiHBD 0.0
70: lipinskiHBD 0.0
70: NumRotatableBonds 0.0
70: NumRotatableBonds 0.0
70: NumHBD 0.0
70: NumHBD 0.0
70: NumHBA 0.0
70: NumHBA 0.0
70: NumHeteroatoms 0.0
70: NumHeteroatoms 0.0
70: NumAmideBonds 0.0
70: NumAmideBonds 0.0
70: FractionCSP3 0.0
70: FractionCSP3 0.0
70: NumRings 1.0
70: NumRings 1.0
70: NumAromaticRings 1.0
70: NumAromaticRings 1.0
70: NumAliphaticRings 0.0
70: NumAliphaticRings 0.0
70: NumSaturatedRings 0.0
70: NumSaturatedRings 0.0
70: NumHeterocycles 0.0
70: NumHeterocycles 0.0
70: NumAromaticHeterocycles 0.0
70: NumAromaticHeterocycles 0.0
70: NumSaturatedHeterocycles 0.0
70: NumSaturatedHeterocycles 0.0
70: NumAliphaticHeterocycles 0.0
70: NumAliphaticHeterocycles 0.0
70: NumSpiroAtoms 0.0
70: NumSpiroAtoms 0.0
70: NumBridgeheadAtoms 0.0
70: NumBridgeheadAtoms 0.0
70: NumAtomStereoCenters 0.0
70: NumAtomStereoCenters 0.0
70: NumUnspecifiedAtomStereoCenters 0.0
70: NumUnspecifiedAtomStereoCenters 0.0
70: labuteASA 37.4314031195
70: labuteASA 37.4314031195
70: tpsa 0.0
70: tpsa 0.0
70: CrippenClogP 1.6866
70: CrippenClogP 1.6866
70: CrippenMR 26.442
70: CrippenMR 26.442
70: NumAtoms 6.0
70: NumAtoms 6.0
70: exactmw 78.046950192
70: exactmw 78.046950192
70: lipinskiHBA 0.0
70: lipinskiHBA 0.0
70: Ran 23 tests in 0.026s
70: Ran 23 tests in 0.026s
70: 
70: 
70: OK
70: OK
 70/130 Test  #70: pyMolDescriptors ...................   Passed    0.47 sec
 70/130 Test  #70: pyMolDescriptors ...................   Passed    0.47 sec
test 71
test 71
        Start  71: pyMolDescriptors3D
        Start  71: pyMolDescriptors3D
71: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/test3D.py"
71: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Descriptors/Wrap/test3D.py"
71: Test timeout computed to be: 9.99988e+06
71: Test timeout computed to be: 9.99988e+06
71: ......
71: ......
71: ----------------------------------------------------------------------
71: ----------------------------------------------------------------------
71: Ran 6 tests in 0.071s
71: Ran 6 tests in 0.071s
71: 
71: 
71: OK
71: OK
 71/130 Test  #71: pyMolDescriptors3D .................   Passed    0.21 sec
 71/130 Test  #71: pyMolDescriptors3D .................   Passed    0.21 sec
test 72
test 72
        Start  72: testFingerprints
        Start  72: testFingerprints
72: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/testFingerprints
72: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Fingerprints/testFingerprints
72: Test timeout computed to be: 9.99988e+06
72: Test timeout computed to be: 9.99988e+06
72: [10:55:27] testing basics
72: [10:55:27] testing basics
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: Atoms:
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing subgraph invariants
72: [10:55:27] testing subgraph invariants
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing auto folding
72: [10:55:27] testing auto folding
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing basics alg2
72: [10:55:27] testing basics alg2
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing subgraph invariants alg2
72: [10:55:27] testing subgraph invariants alg2
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp1 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] --------------------  fp2 
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing similarity trends
72: [10:55:27] testing similarity trends
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: SMI: Oc1cc2[nH]cnc2c(O)n1
72: SMI: Oc1cc2[nH]cnc2c(O)n1
72: Atoms:
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c1(O)cc2[nH]cnc2c(O)n1
72: SMI: c1(O)cc2[nH]cnc2c(O)n1
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c1c(O)nc(O)c2c1[nH]cn2
72: SMI: c1c(O)nc(O)c2c1[nH]cn2
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	3 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->6 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->6 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c12cc(O)nc(O)c1nc[nH]2
72: SMI: c12cc(O)nc(O)c1nc[nH]2
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	3 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 1 conj?: 1 aromatic?: 0
72: 	2 2->3 order: 1 conj?: 1 aromatic?: 0
72: 	3 2->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 2->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: [nH]1c2cc(O)nc(O)c2nc1
72: SMI: [nH]1c2cc(O)nc(O)c2nc1
72: Atoms:
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	7 6->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 6->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->1 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c1[nH]c2cc(O)nc(O)c2n1
72: SMI: c1[nH]c2cc(O)nc(O)c2n1
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	8 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 1 conj?: 1 aromatic?: 0
72: 	7 7->8 order: 1 conj?: 1 aromatic?: 0
72: 	8 7->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 7->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 9->2 order: 12 conj?: 1 aromatic?: 1
72: 	11 9->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: n1c[nH]c2cc(O)nc(O)c21
72: SMI: n1c[nH]c2cc(O)nc(O)c21
72: Atoms:
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->3 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->3 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c12c(cc(O)nc1O)[nH]cn2
72: SMI: c12c(cc(O)nc1O)[nH]cn2
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
72: 	7 1->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 1->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 6->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 6->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: c1(O)c2c(cc(O)n1)[nH]cn2
72: SMI: c1(O)c2c(cc(O)n1)[nH]cn2
72: Atoms:
72: Atoms:
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: [10:55:27] done
72: [10:55:27] done
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: Oc1c2c(cc(O)n1)[nH]cn2
72: SMI: Oc1c2c(cc(O)n1)[nH]cn2
72: Atoms:
72: Atoms:
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: [10:55:27] testing basics layered fps
72: [10:55:27] testing basics layered fps
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->1 order: 12 conj?: 1 aromatic?: 1
72: 	10 7->1 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: SMI: n1c(O)cc2[nH]cnc2c1O
72: SMI: n1c(O)cc2[nH]cnc2c1O
72: Atoms:
72: Atoms:
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	6 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
72: 	10 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: 	10 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
72: Bonds:
72: Bonds:
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
72: 	9 9->10 order: 1 conj?: 1 aromatic?: 0
72: 	9 9->10 order: 1 conj?: 1 aromatic?: 0
72: 	10 9->0 order: 12 conj?: 1 aromatic?: 1
72: 	10 9->0 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->4 order: 12 conj?: 1 aromatic?: 1
72: 	11 8->4 order: 12 conj?: 1 aromatic?: 1
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: 
72: -------------------
72: -------------------
72: 
72: 
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing advanced layered fps
72: [10:55:27] testing advanced layered fps
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing layered fps and queries
72: [10:55:27] testing layered fps and queries
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints.
72: [10:55:27]     Test Morgan Fingerprints.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints using fromAtoms argument.
72: [10:55:27]     Test Morgan Fingerprints using fromAtoms argument.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints as bit vects.
72: [10:55:27]     Test Morgan Fingerprints as bit vects.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Morgan Fingerprints with feature invariants.
72: [10:55:27]     Test Morgan Fingerprints with feature invariants.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test additional Morgan fingerprints options.
72: [10:55:27]     Test additional Morgan fingerprints options.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Codes.
72: [10:55:27]     Test Atom Codes.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs.
72: [10:55:27]     Test Atom Pairs.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs part 2.
72: [10:55:27]     Test Atom Pairs part 2.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Topological Torsions.
72: [10:55:27]     Test Topological Torsions.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Bulk Topological Torsions.
72: [10:55:27]     Test Bulk Topological Torsions.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Hashed Atom Pairs.
72: [10:55:27]     Test Hashed Atom Pairs.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Hashed torsions.
72: [10:55:27]     Test Hashed torsions.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Rooted Atom Pairs.
72: [10:55:27]     Test Rooted Atom Pairs.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test ignoring atoms in Atom Pairs.
72: [10:55:27]     Test ignoring atoms in Atom Pairs.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Rooted Topological Torsions.
72: [10:55:27]     Test Rooted Topological Torsions.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test ignoring atoms in Topological Torsions.
72: [10:55:27]     Test ignoring atoms in Topological Torsions.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test atom info from morgan fingerprints.
72: [10:55:27]     Test atom info from morgan fingerprints.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27] testing RDKit fingerprint options
72: [10:55:27] testing RDKit fingerprint options
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing atom pair and torsions options
72: [10:55:27] testing atom pair and torsions options
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing MACCS key calculation
72: [10:55:27] testing MACCS key calculation
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing RDKit fingerprints rooted at particular atoms
72: [10:55:27] testing RDKit fingerprints rooted at particular atoms
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] testing RDKit fingerprints reporting atomBits
72: [10:55:27] testing RDKit fingerprints reporting atomBits
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27] done
72: [10:55:27] done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Atom Pairs including info about chirality.
72: [10:55:27]     Test Atom Pairs including info about chirality.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test Topological Torsions including info about chirality.
72: [10:55:27]     Test Topological Torsions including info about chirality.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 25: fingerprint backwards compatibility.
72: [10:55:27]     Test GitHub Issue 25: fingerprint backwards compatibility.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 151: PatternFingerprint problems
72: [10:55:27]     Test GitHub Issue 151: PatternFingerprint problems
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test 3D atom pairs.
72: [10:55:27]     Test 3D atom pairs.
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
72: [10:55:27]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
72: [10:55:27]   done
72: [10:55:27]   done
72: [10:55:27] -------------------------------------
72: [10:55:27] -------------------------------------
72: [10:55:27]     Test multithreading with the pattern FP
72: [10:55:27]     Test multithreading with the pattern FP
72: reading molecules
72: reading molecules
72: pass 1
72: pass 1
72:  launch :0
72:  launch :0
72:  launch :1
72:  launch :1
72:  launch :2
72:  launch :2
72:  launch :3
72:  launch :3
72: pass 2
72: pass 2
72:  launch :0
72:  launch :0
72:  launch :1
72:  launch :1
72:  launch :2
72:  launch :2
72:  launch :3
72:  launch :3
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
72: [10:55:36]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
72: [10:55:36]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
72: [10:55:36]     Test GitHub Issue 695: Include cis/trans stereochemistry when useChirality=true with the morgan fingerprints
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
72: [10:55:36]     Test GitHub Issue 811: rooted atom fingerprint non identical for the same molecules #811
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test unfolded version of RDKFP   
72: [10:55:36]     Test unfolded version of RDKFP   
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Test bitinfo of RDKFP   
72: [10:55:36]     Test bitinfo of RDKFP   
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36]     Single atoms setting radius 1 bits in Morgan fingerprints  
72: [10:55:36]     Single atoms setting radius 1 bits in Morgan fingerprints  
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36] Github #879: Pattern fingerprint should set bits for single-atom fragments.
72: [10:55:36] Github #879: Pattern fingerprint should set bits for single-atom fragments.
72: [10:55:36]   done
72: [10:55:36]   done
72: [10:55:36] -------------------------------------
72: [10:55:36] -------------------------------------
72: [10:55:36] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms
72: [10:55:36] Github #1496: Pattern fingerprint setting bad bits for degree zero atoms
72: [10:55:36]   done
72: [10:55:36]   done
 72/130 Test  #72: testFingerprints ...................   Passed    8.90 sec
 72/130 Test  #72: testFingerprints ...................   Passed    8.90 sec
test 73
test 73
        Start  73: testPartialCharges
        Start  73: testPartialCharges
73: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/testPartialCharges
73: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/testPartialCharges
73: Test timeout computed to be: 9.99988e+06
73: Test timeout computed to be: 9.99988e+06
73: [10:55:36] -------------------------------------
73: [10:55:36] -------------------------------------
73: [10:55:36]     Test GitHub issue 485: Gasteiger charge calculation fails with hexavalent sulfur
73: [10:55:36]     Test GitHub issue 485: Gasteiger charge calculation fails with hexavalent sulfur
73: [10:55:36]   done
73: [10:55:36]   done
 73/130 Test  #73: testPartialCharges .................   Passed    0.02 sec
 73/130 Test  #73: testPartialCharges .................   Passed    0.02 sec
test 74
test 74
        Start  74: pyPartialCharges
        Start  74: pyPartialCharges
74: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py"
74: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py"
74: Test timeout computed to be: 9.99988e+06
74: Test timeout computed to be: 9.99988e+06
74: ......
74: ......
74: ----------------------------------------------------------------------
74: ----------------------------------------------------------------------
74: Ran 6 tests in 0.205s
74: Ran 6 tests in 0.205s
74: 
74: 
74: OK
74: OK
 74/130 Test  #74: pyPartialCharges ...................   Passed    0.35 sec
 74/130 Test  #74: pyPartialCharges ...................   Passed    0.35 sec
test 75
test 75
        Start  75: testMolTransforms
        Start  75: testMolTransforms
75: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/testMolTransforms
75: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/testMolTransforms
75: Test timeout computed to be: 9.99988e+06
75: Test timeout computed to be: 9.99988e+06
75: ***********************************************************
75: ***********************************************************
75: Testing MolTransforms
75: Testing MolTransforms
75: 	---------------------------------
75: 	---------------------------------
75: 	 test1Canonicalization 
75: 	 test1Canonicalization 
75: 
75: 
75: 	---------------------------------
75: 	---------------------------------
75: 	 testGetSetBondLength 
75: 	 testGetSetBondLength 
75: 
75: 
75: 	---------------------------------
75: 	---------------------------------
75: 	 testGetSetAngle 
75: 	 testGetSetAngle 
75: 
75: 
75: 	---------------------------------
75: 	---------------------------------
75: 	 testGetSetDihedral 
75: 	 testGetSetDihedral 
75: 
75: 
75: 	---------------------------------
75: 	---------------------------------
75: 	 testGithub1262: PMI descriptors incorrect  
75: 	 testGithub1262: PMI descriptors incorrect  
75: 
75: 
75: ***********************************************************
75: ***********************************************************
 75/130 Test  #75: testMolTransforms ..................   Passed    0.02 sec
 75/130 Test  #75: testMolTransforms ..................   Passed    0.02 sec
test 76
test 76
        Start  76: pyMolTransforms
        Start  76: pyMolTransforms
76: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py"
76: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py"
76: Test timeout computed to be: 9.99988e+06
76: Test timeout computed to be: 9.99988e+06
76: ....
76: ....
76: ----------------------------------------------------------------------
76: ----------------------------------------------------------------------
76: Ran 4 tests in 0.013s
76: Ran 4 tests in 0.013s
76: 
76: 
76: OK
76: OK
 76/130 Test  #76: pyMolTransforms ....................   Passed    0.12 sec
 76/130 Test  #76: pyMolTransforms ....................   Passed    0.12 sec
test 77
test 77
        Start  77: testMMFFForceFieldHelpers
        Start  77: testMMFFForceFieldHelpers
77: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
77: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
77: Test timeout computed to be: 9.99988e+06
77: Test timeout computed to be: 9.99988e+06
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF atom types.
77: [10:55:37]     Test MMFF atom types.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing MMFF builder tools.
77: [10:55:37]     Testing MMFF builder tools.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing MMFF builder+minimization.
77: [10:55:37]     Testing MMFF builder+minimization.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing Issue239.
77: [10:55:37]     Testing Issue239.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing Issue242.
77: [10:55:37]     Testing Issue242.
77: [10:55:37] E1: 169.67
77: [10:55:37] E1: 169.67
77: [10:55:37] E2: 162.526
77: [10:55:37] E2: 162.526
77: [10:55:37] E1: 99.6001
77: [10:55:37] E1: 99.6001
77: [10:55:37] E2: 99.6001
77: [10:55:37] E2: 99.6001
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing github 308: crash during MMFF parameterization .
77: [10:55:37]     Testing github 308: crash during MMFF parameterization .
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing SFIssue1653802.
77: [10:55:37]     Testing SFIssue1653802.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing SFIssue2378119.
77: [10:55:37]     Testing SFIssue2378119.
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Testing bulk MMFF (regression to check that things run).
77: [10:55:37]     Testing bulk MMFF (regression to check that things run).
77: [10:55:37] Mol:1
77: [10:55:37] Mol:1
77: [10:55:37] Mol:2
77: [10:55:37] Mol:2
77: [10:55:37] Mol:3
77: [10:55:37] Mol:3
77: [10:55:37] Mol:4
77: [10:55:37] Mol:4
77: [10:55:37] Mol:5
77: [10:55:37] Mol:5
77: [10:55:37] Mol:6
77: [10:55:37] Mol:6
77: [10:55:37] Mol:7
77: [10:55:37] Mol:7
77: [10:55:37] Mol:8
77: [10:55:37] Mol:8
77: [10:55:37] Mol:9
77: [10:55:37] Mol:9
77: [10:55:37] Mol:10
77: [10:55:37] Mol:10
77: [10:55:37] Mol:11
77: [10:55:37] Mol:11
77: [10:55:37] Mol:12
77: [10:55:37] Mol:12
77: [10:55:37] Mol:13
77: [10:55:37] Mol:13
77: [10:55:37] Mol:14
77: [10:55:37] Mol:14
77: [10:55:37] Mol:15
77: [10:55:37] Mol:15
77: [10:55:37] Mol:16
77: [10:55:37] Mol:16
77: [10:55:37] Mol:17
77: [10:55:37] Mol:17
77: [10:55:37] Mol:18
77: [10:55:37] Mol:18
77: [10:55:37] Mol:19
77: [10:55:37] Mol:19
77: [10:55:37] Mol:20
77: [10:55:37] Mol:20
77: [10:55:37] Mol:21
77: [10:55:37] Mol:21
77: [10:55:37] Mol:22
77: [10:55:37] Mol:22
77: [10:55:37] Mol:23
77: [10:55:37] Mol:23
77: [10:55:37] Mol:24
77: [10:55:37] Mol:24
77: [10:55:37] Mol:25
77: [10:55:37] Mol:25
77: [10:55:37] Mol:26
77: [10:55:37] Mol:26
77: [10:55:37] Mol:27
77: [10:55:37] Mol:27
77: [10:55:37] Mol:28
77: [10:55:37] Mol:28
77: [10:55:37] Mol:29
77: [10:55:37] Mol:29
77: [10:55:37] Mol:30
77: [10:55:37] Mol:30
77: [10:55:37] Mol:31
77: [10:55:37] Mol:31
77: [10:55:37]   done
77: [10:55:37]   done
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF force-field parameter getters.
77: [10:55:37]     Test MMFF force-field parameter getters.
77: [10:55:37] -------------------------------------
77: [10:55:37] -------------------------------------
77: [10:55:37]     Test MMFF multithreading
77: [10:55:37]     Test MMFF multithreading
77: generating reference data
77: generating reference data
77: processing
77: processing
77:  launch :0
77:  launch :0
77:  launch :1
77:  launch :1
77:  launch :2
77:  launch :2
77: [10:55:37] Rep: 0 Mol:0
77: [10:55:37] Rep: 0 Mol:0
77:  launch :3
77:  launch :3
77: [10:55:37] Rep: 0 Mol:1
77: [10:55:37] Rep: 0 Mol:1
77: [10:55:37] Rep: 0 Mol:2
77: [10:55:37] Rep: 0 Mol:2
77: [10:55:37] Rep: 0 Mol:3
77: [10:55:37] Rep: 0 Mol:3
77: [10:55:37] Rep: 0 Mol:5
77: [10:55:37] Rep: 0 Mol:5
77: [10:55:37] Rep: 0 Mol:9
77: [10:55:37] Rep: 0 Mol:9
77: [10:55:37] Rep: 0 Mol:4
77: [10:55:37] Rep: 0 Mol:4
77: [10:55:37] Rep: 0 Mol:13
77: [10:55:37] Rep: 0 Mol:13
77: [10:55:37] Rep: 0 Mol:17
77: [10:55:37] Rep: 0 Mol:17
77: [10:55:37] Rep: 0 Mol:6
77: [10:55:37] Rep: 0 Mol:6
77: [10:55:37] Rep: 0 Mol:8
77: [10:55:37] Rep: 0 Mol:8
77: [10:55:37] Rep: 0 Mol:10
77: [10:55:37] Rep: 0 Mol:10
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77: [10:55:37] Rep: 0 Mol:12
77: [10:55:37] Rep: 0 Mol:16
77: [10:55:37] Rep: 0 Mol:16
77: [[10:55:37] Rep: 0 Mol:7
77: [[10:55:37] Rep: 0 Mol:7
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77: [10:55:37] Rep: 0 Mol:19
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77: [10:55:37] Rep: 0 Mol:26
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77: [10:55:37] Rep: 0 Mol:30
77: [10:55:38] Rep: 100 Mol:3
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77: [10:55:38] Rep: 100 Mol:31
77: [10:55:39] Rep: 100 Mol:0
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77: [10:55:40] Rep: 200 Mol:25
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77: [10:55:40] Rep: 300 Mol:3
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77: [10:55:40] Rep: 300 Mol:7
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77: [10:55:41] Rep: 400 Mol:3
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77: [10:55:42] Rep: 400 Mol:12
77: [10:55:42] Rep: 400 Mol:12
77: [10:55:42] Rep: 400 Mol:16
77: [10:55:42] Rep: 400 Mol:16
77: [10:55:42] Rep: 400 Mol:20
77: [10:55:42] Rep: 400 Mol:20
77: [10:55:42] Rep: 400 Mol:24
77: [10:55:42] Rep: 400 Mol:24
77: [10:55:42] Rep: 400 Mol:28
77: [10:55:42] Rep: 400 Mol:28
77: [10:55:42] Rep: 400 Mol:1
77: [10:55:42] Rep: 400 Mol:1
77: [10:55:42] Rep: 400 Mol:5
77: [10:55:42] Rep: 400 Mol:5
77: [10:55:42] Rep: 400 Mol:9
77: [10:55:42] Rep: 400 Mol:9
77: [10:55:42] Rep: 400 Mol:13
77: [10:55:42] Rep: 400 Mol:13
77: [10:55:42] Rep: 400 Mol:17
77: [10:55:42] Rep: 400 Mol:17
77: [10:55:42] Rep: 400 Mol:21
77: [10:55:42] Rep: 400 Mol:21
77: [10:55:42] Rep: 400 Mol:25
77: [10:55:42] Rep: 400 Mol:25
77: [10:55:42] Rep: 400 Mol:29
77: [10:55:42] Rep: 400 Mol:29
77: [10:55:43] Rep: 400 Mol:2
77: [10:55:43] Rep: 400 Mol:2
77: [10:55:43] Rep: 400 Mol:6
77: [10:55:43] Rep: 400 Mol:6
77: [10:55:43] Rep: 400 Mol:10
77: [10:55:43] Rep: 400 Mol:10
77: [10:55:43] Rep: 400 Mol:14
77: [10:55:43] Rep: 400 Mol:14
77: [10:55:43] Rep: 400 Mol:18
77: [10:55:43] Rep: 400 Mol:18
77: [10:55:43] Rep: 400 Mol:22
77: [10:55:43] Rep: 400 Mol:22
77: [10:55:43] Rep: 400 Mol:26
77: [10:55:43] Rep: 400 Mol:26
77: [10:55:43] Rep: 400 Mol:30
77: [10:55:43] Rep: 400 Mol:30
77: [10:55:44]   done
77: [10:55:44]   done
77: [10:55:44] -------------------------------------
77: [10:55:44] -------------------------------------
77: [10:55:44]     Test MMFF multithreading2
77: [10:55:44]     Test MMFF multithreading2
77: [10:55:50]   done
77: [10:55:50]   done
77: [10:55:50] -------------------------------------
77: [10:55:50] -------------------------------------
77: [10:55:50]     Testing github 162: Incorrect SMILES after MMFF parameterization .
77: [10:55:50]     Testing github 162: Incorrect SMILES after MMFF parameterization .
77: [10:55:50]   done
77: [10:55:50]   done
77: [10:55:50] -------------------------------------
77: [10:55:50] -------------------------------------
77: [10:55:50]     Testing github 224: crash during MMFF parameterization .
77: [10:55:50]     Testing github 224: crash during MMFF parameterization .
77: [10:55:50]   done
77: [10:55:50]   done
 77/130 Test  #77: testMMFFForceFieldHelpers ..........   Passed   13.17 sec
 77/130 Test  #77: testMMFFForceFieldHelpers ..........   Passed   13.17 sec
test 78
test 78
        Start  78: testUFFForceFieldHelpers
        Start  78: testUFFForceFieldHelpers
78: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
78: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
78: Test timeout computed to be: 9.99988e+06
78: Test timeout computed to be: 9.99988e+06
78: [10:55:50] -------------------------------------
78: [10:55:50] -------------------------------------
78: [10:55:50]     Test UFF atom labels.
78: [10:55:50]     Test UFF atom labels.
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 5
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 5
78: [10:55:50]   done
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50] -------------------------------------
78: [10:55:50]     Test UFF atom typer.
78: [10:55:50]     Test UFF atom typer.
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 1
78: [10:55:50] UFFTYPER: Warning: hybridization set to SP3 for atom 1
78: [10:55:50]   done
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing UFF builder tools.
78: [10:55:50]     Testing UFF builder tools.
78: [10:55:50]   done
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing UFF builder+minimization.
78: [10:55:50]     Testing UFF builder+minimization.
78: [10:55:50]   done
78: [10:55:50]   done
78: [10:55:50] -------------------------------------
78: [10:55:50] -------------------------------------
78: [10:55:50]     Testing bulk UFF (regression to check that things run).
78: [10:55:50]     Testing bulk UFF (regression to check that things run).
78: [10:55:50] Mol:1
78: [10:55:50] Mol:1
78: [10:55:50] Mol:2
78: [10:55:50] Mol:2
78: [10:55:50] Mol:3
78: [10:55:50] Mol:3
78: [10:55:50] Mol:4
78: [10:55:50] Mol:4
78: [10:55:50] Mol:5
78: [10:55:50] Mol:5
78: [10:55:50] Mol:6
78: [10:55:50] Mol:6
78: [10:55:50] Mol:7
78: [10:55:50] Mol:7
78: [10:55:50] Mol:8
78: [10:55:50] Mol:8
78: [10:55:50] Mol:9
78: [10:55:50] Mol:9
78: [10:55:50] Mol:10
78: [10:55:50] Mol:10
78: [10:55:50] Mol:11
78: [10:55:50] Mol:11
78: [10:55:50] Mol:12
78: [10:55:50] Mol:12
78: [10:55:50] Mol:13
78: [10:55:50] Mol:13
78: [10:55:50] Mol:14
78: [10:55:50] Mol:14
78: [10:55:50] Mol:15
78: [10:55:50] Mol:15
78: [10:55:50] Mol:16
78: [10:55:50] Mol:16
78: [10:55:50] Mol:17
78: [10:55:50] Mol:17
78: [10:55:50] Mol:18
78: [10:55:50] Mol:18
78: [10:55:50] Mol:19
78: [10:55:50] Mol:19
78: [10:55:50] Mol:20
78: [10:55:50] Mol:20
78: [10:55:50] Mol:21
78: [10:55:50] Mol:21
78: [10:55:50] Mol:22
78: [10:55:50] Mol:22
78: [10:55:50] Mol:23
78: [10:55:50] Mol:23
78: [10:55:51] Mol:24
78: [10:55:51] Mol:24
78: [10:55:51] Mol:25
78: [10:55:51] Mol:25
78: [10:55:51] Mol:26
78: [10:55:51] Mol:26
78: [10:55:51] Mol:27
78: [10:55:51] Mol:27
78: [10:55:51] Mol:28
78: [10:55:51] Mol:28
78: [10:55:51] Mol:29
78: [10:55:51] Mol:29
78: [10:55:51] Mol:30
78: [10:55:51] Mol:30
78: [10:55:51] Mol:31
78: [10:55:51] Mol:31
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing UFF special cases.
78: [10:55:51]     Testing UFF special cases.
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 0
78: [10:55:51] UFFTYPER: Unrecognized charge state for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized charge state for atom: 0
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing Issue239.
78: [10:55:51]     Testing Issue239.
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue1653802.
78: [10:55:51]     Testing SFIssue1653802.
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue2378119.
78: [10:55:51]     Testing SFIssue2378119.
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Test UFF force-field parameter getters.
78: [10:55:51]     Test UFF force-field parameter getters.
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing handling missing parameters.
78: [10:55:51]     Testing handling missing parameters.
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized hybridization for atom: 0
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51] UFFTYPER: Unrecognized atom type: Cu (0)
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Testing SFIssue3009337.
78: [10:55:51]     Testing SFIssue3009337.
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51] UFFTYPER: Warning: hybridization set to SP3 for atom 2
78: [10:55:51]   done
78: [10:55:51]   done
78: [10:55:51] -------------------------------------
78: [10:55:51] -------------------------------------
78: [10:55:51]     Test UFF multithreading
78: [10:55:51]     Test UFF multithreading
78: generating reference data
78: generating reference data
78: processing
78: processing
78:  launch :0
78:  launch :0
78:  launch :1
78:  launch :1
78:  launch :2
78:  launch :2
78: [10:55:51] Rep: 0 Mol:0[[10:55:51] Rep: 0 Mol:1
78: [10:55:51] Rep: 0 Mol:0[[10:55:51] Rep: 0 Mol:1
78: 
78: 
78:  launch :3
78:  launch :3
78: [10:55:51] Rep: 0 Mol:5
78: [10:55:51] Rep: 0 Mol:5
78: [10:55:51] Rep: 0 Mol:9
78: [10:55:51] Rep: 0 Mol:9
78: [10:55:51] Rep: 0 Mol:13
78: [10:55:51] Rep: 0 Mol:13
78: 10:55:51] Rep: 0 Mol:2
78: 10:55:51] Rep: 0 Mol:2
78: [10:55:51] Rep: 0 Mol:3
78: [10:55:51] Rep: 0 Mol:3
78: [10:55:51] Rep: 0 Mol:4
78: [10:55:51] Rep: 0 Mol:4
78: [10:55:51] Rep: 0 Mol:17
78: [10:55:51] Rep: 0 Mol:17
78: [10:55:51] Rep: 0 Mol:6
78: [10:55:51] Rep: 0 Mol:6
78: [10:55:51] Rep: 0 Mol:7
78: [10:55:51] Rep: 0 Mol:7
78: [10:55:51] Rep: 0 Mol:11
78: [10:55:51] Rep: 0 Mol:11
78: [10:55:51] Rep: 0 Mol:15
78: [10:55:51] Rep: 0 Mol:15
78: [10:55:51] Rep: 0 Mol:19
78: [10:55:51] Rep: 0 Mol:19
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78: [10:55:51] Rep: 0 Mol:10
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78: [10:55:51] Rep: 0 Mol:8
78: [[10:55:51] Rep: 0 Mol:23
78: [[10:55:51] Rep: 0 Mol:23
78: [10:55:51] Rep: 0 Mol:27
78: [10:55:51] Rep: 0 Mol:27
78: [10:55:51] Rep: 0 Mol:31
78: [10:55:51] Rep: 0 Mol:31
78: [10:55:51] Rep: 0 Mol:25
78: [10:55:51] Rep: 0 Mol:25
78: 10:55:51] Rep: 0 Mol:12
78: 10:55:51] Rep: 0 Mol:12
78: [10:55:51] Rep: 0 Mol:16
78: [10:55:51] Rep: 0 Mol:16
78: [10:55:51] Rep: 0 Mol:14
78: [10:55:51] Rep: 0 Mol:14
78: [10:55:51] Rep: 0 Mol:20
78: [10:55:51] Rep: 0 Mol:20
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78: [10:55:51] Rep: 0 Mol:18
78: [10:55:51] Rep: 0 Mol:22
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78: [10:55:51] Rep: 0 Mol:29
78: [10:55:51] Rep: 0 Mol:29
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78: [10:55:51] Rep: 0 Mol:24
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78: [10:55:51] Rep: 0 Mol:26
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78: [10:55:51] Rep: 0 Mol:28
78: [10:55:51] Rep: 0 Mol:30
78: [10:55:51] Rep: 0 Mol:30
78: [10:55:52] Rep: 100 Mol:3
78: [10:55:52] Rep: 100 Mol:3
78: [10:55:52] Rep: 100 Mol:7
78: [10:55:52] Rep: 100 Mol:7
78: [10:55:52] Rep: 100 Mol:11
78: [10:55:52] Rep: 100 Mol:11
78: [10:55:52] Rep: 100 Mol:15
78: [10:55:52] Rep: 100 Mol:15
78: [10:55:52] Rep: 100 Mol:19
78: [10:55:52] Rep: 100 Mol:19
78: [10:55:52] Rep: 100 Mol:23
78: [10:55:52] Rep: 100 Mol:23
78: [10:55:52] Rep: 100 Mol:27
78: [10:55:52] Rep: 100 Mol:27
78: [10:55:52] Rep: 100 Mol:31
78: [10:55:52] Rep: 100 Mol:31
78: [10:55:52] Rep: 100 Mol:1
78: [10:55:52] Rep: 100 Mol:1
78: [10:55:52] Rep: 100 Mol:5
78: [10:55:52] Rep: 100 Mol:5
78: [10:55:52] Rep: 100 Mol:9
78: [10:55:52] Rep: 100 Mol:9
78: [10:55:52] Rep: 100 Mol:13
78: [10:55:52] Rep: 100 Mol:13
78: [10:55:52] Rep: 100 Mol:17
78: [10:55:52] Rep: 100 Mol:17
78: [10:55:52] Rep: 100 Mol:21
78: [10:55:52] Rep: 100 Mol:21
78: [10:55:52] Rep: 100 Mol:25
78: [10:55:52] Rep: 100 Mol:25
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78: [10:55:52] Rep: 100 Mol:29
78: [10:55:52] Rep: 100 Mol:0
78: [10:55:52] Rep: 100 Mol:0
78: [10:55:52] Rep: 100 Mol:4
78: [10:55:52] Rep: 100 Mol:4
78: [10:55:52] Rep: 100 Mol:8
78: [10:55:52] Rep: 100 Mol:8
78: [10:55:52] Rep: 100 Mol:12
78: [10:55:52] Rep: 100 Mol:12
78: [10:55:52] Rep: 100 Mol:16
78: [10:55:52] Rep: 100 Mol:16
78: [10:55:52] Rep: 100 Mol:20
78: [10:55:52] Rep: 100 Mol:20
78: [10:55:52] Rep: 100 Mol:24
78: [10:55:52] Rep: 100 Mol:24
78: [10:55:52] Rep: 100 Mol:28
78: [10:55:52] Rep: 100 Mol:28
78: [10:55:52] Rep: 100 Mol:2
78: [10:55:52] Rep: 100 Mol:2
78: [10:55:52] Rep: 100 Mol:6
78: [10:55:52] Rep: 100 Mol:6
78: [10:55:52] Rep: 100 Mol:10
78: [10:55:52] Rep: 100 Mol:10
78: [10:55:52] Rep: 100 Mol:14
78: [10:55:52] Rep: 100 Mol:14
78: [10:55:52] Rep: 100 Mol:18
78: [10:55:52] Rep: 100 Mol:18
78: [10:55:52] Rep: 100 Mol:22
78: [10:55:52] Rep: 100 Mol:22
78: [10:55:52] Rep: 100 Mol:26
78: [10:55:52] Rep: 100 Mol:26
78: [10:55:52] Rep: 100 Mol:30
78: [10:55:52] Rep: 100 Mol:30
78: [10:55:52] Rep: 200 Mol:3
78: [10:55:52] Rep: 200 Mol:3
78: [10:55:52] Rep: 200 Mol:7
78: [10:55:52] Rep: 200 Mol:7
78: [10:55:52] Rep: 200 Mol:11
78: [10:55:52] Rep: 200 Mol:11
78: [10:55:52] Rep: 200 Mol:15
78: [10:55:52] Rep: 200 Mol:15
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78: [10:55:52] Rep: 200 Mol:19
78: [10:55:52] Rep: 200 Mol:23
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78: [10:55:52] Rep: 200 Mol:27
78: [10:55:52] Rep: 200 Mol:31
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78: [10:55:52] Rep: 200 Mol:0
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78: [10:55:52] Rep: 200 Mol:4
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78: [10:55:52] Rep: 200 Mol:8
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78: [10:55:52] Rep: 200 Mol:9
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78: [10:55:52] Rep: 200 Mol:29
78: [10:55:53] Rep: 300 Mol:3
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78: [10:55:53] Rep: 300 Mol:7
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78: [10:55:53] Rep: 300 Mol:11
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78: [10:55:53] Rep: 300 Mol:19
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78: [10:55:53] Rep: 200 Mol:6
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78: [10:55:53] Rep: 300 Mol:0
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78: [10:55:53] Rep: 300 Mol:8
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78: [10:55:53] Rep: 400 Mol:3
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78: [10:55:53] Rep: 400 Mol:7
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78: [10:55:57] Rep: 900 Mol:30
78: [10:55:57]   done
78: [10:55:57]   done
78: [10:55:57] -------------------------------------
78: [10:55:57] -------------------------------------
78: [10:55:57]     Test UFF multithreading2
78: [10:55:57]     Test UFF multithreading2
78: [10:56:04]   done
78: [10:56:04]   done
78: [10:56:04] -------------------------------------
78: [10:56:04] -------------------------------------
78: [10:56:04]     Testing GitHubIssue62.
78: [10:56:04]     Testing GitHubIssue62.
78: [10:56:04] beta-lactam 38.6865
78: [10:56:04] beta-lactam 38.6865
78: [10:56:04] cyclopropanone 174.698
78: [10:56:04] cyclopropanone 174.698
78: [10:56:04] aziridine 337.986
78: [10:56:04] aziridine 337.986
78: [10:56:04] aziridinone 115.248
78: [10:56:04] aziridinone 115.248
78: [10:56:04] isobutene 2.48217
78: [10:56:04] isobutene 2.48217
78: [10:56:04] acetone 1.91788
78: [10:56:04] acetone 1.91788
78: [10:56:04] cyclopentanone 10.1648
78: [10:56:04] cyclopentanone 10.1648
78: [10:56:04] cyclopropene 98.4685
78: [10:56:04] cyclopropene 98.4685
78: [10:56:04] cyclobutene 39.0782
78: [10:56:04] cyclobutene 39.0782
78: [10:56:04] cyclopropane 267.236
78: [10:56:04] cyclopropane 267.236
78: [10:56:04] gamma-lactam 15.7471
78: [10:56:04] gamma-lactam 15.7471
78: [10:56:04] trans-2,3-diphenylcyclopropan-1-one 202.121
78: [10:56:04] trans-2,3-diphenylcyclopropan-1-one 202.121
78: [10:56:04] cis-2,3-diphenylcyclopropan-1-one 205.539
78: [10:56:04] cis-2,3-diphenylcyclopropan-1-one 205.539
78: [10:56:04] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
78: [10:56:04] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
78: [10:56:04] cyclopropylidencyclobutane 218.986
78: [10:56:04] cyclopropylidencyclobutane 218.986
78: [10:56:04] diphenylmethylidencyclobutane 79.6273
78: [10:56:04] diphenylmethylidencyclobutane 79.6273
78: [10:56:04]   done
78: [10:56:04]   done
78: [10:56:04] -------------------------------------
78: [10:56:04] -------------------------------------
78: [10:56:04]     Test Github Issue 613: UFF Atom type not properly assigned to lanthanides.
78: [10:56:04]     Test Github Issue 613: UFF Atom type not properly assigned to lanthanides.
78: [10:56:04]   done
78: [10:56:04]   done
 78/130 Test  #78: testUFFForceFieldHelpers ...........   Passed   14.54 sec
 78/130 Test  #78: testUFFForceFieldHelpers ...........   Passed   14.54 sec
test 79
test 79
        Start  79: testCrystalForceField
        Start  79: testCrystalForceField
79: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalForceField
79: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalForceField
79: Test timeout computed to be: 9.99988e+06
79: Test timeout computed to be: 9.99988e+06
79: -------------------------------------
79: -------------------------------------
79:  Test CrystalFF torsional term.
79:  Test CrystalFF torsional term.
 79/130 Test  #79: testCrystalForceField ..............   Passed    0.03 sec
 79/130 Test  #79: testCrystalForceField ..............   Passed    0.03 sec
test 80
test 80
        Start  80: pyForceFieldHelpers
        Start  80: pyForceFieldHelpers
80: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py"
80: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py"
80: Test timeout computed to be: 9.99988e+06
80: Test timeout computed to be: 9.99988e+06
80: .....[10:56:04] UFFTYPER: Unrecognized hybridization for atom: 0
80: .....[10:56:04] UFFTYPER: Unrecognized hybridization for atom: 0
80: [10:56:04] UFFTYPER: Unrecognized atom type: Cu (0)
80: [10:56:04] UFFTYPER: Unrecognized atom type: Cu (0)
80: ......
80: ......
80: ----------------------------------------------------------------------
80: ----------------------------------------------------------------------
80: Ran 11 tests in 0.024s
80: Ran 11 tests in 0.024s
80: 
80: 
80: OK
80: OK
 80/130 Test  #80: pyForceFieldHelpers ................   Passed    0.17 sec
 80/130 Test  #80: pyForceFieldHelpers ................   Passed    0.17 sec
test 81
test 81
        Start  81: testDistGeomHelpers
        Start  81: testDistGeomHelpers
81: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers
81: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers
81: Test timeout computed to be: 9.99988e+06
81: Test timeout computed to be: 9.99988e+06
81: [10:56:05] ********************************************************
81: [10:56:05] ********************************************************
81: [10:56:05] Testing DistGeomHelpers
81: [10:56:05] Testing DistGeomHelpers
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test2 
81: [10:56:05] 	 test2 
81: 
81: 
81: go
81: go
81: -------------------------------------
81: -------------------------------------
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test3 
81: [10:56:05] 	 test3 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test4 
81: [10:56:05] 	 test4 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test5 
81: [10:56:05] 	 test5 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test6 
81: [10:56:05] 	 test6 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test15Dists 
81: [10:56:05] 	 test15Dists 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test Issue 215 
81: [10:56:05] 	 test Issue 215 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testMultipleConfs 
81: [10:56:05] 	 testMultipleConfs 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testMultipleConfsExpTors 
81: [10:56:05] 	 testMultipleConfsExpTors 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue227 
81: [10:56:05] 	 testIssue227 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue236 
81: [10:56:05] 	 testIssue236 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testOrdering 
81: [10:56:05] 	 testOrdering 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue244 
81: [10:56:05] 	 testIssue244 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue251 
81: [10:56:05] 	 testIssue251 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] ERROR: Cannot convert     to int on line 95
81: [10:56:05] ERROR: Cannot convert     to int on line 95
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] 	 testIssue276 
81: [10:56:05] 	 testIssue276 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue284 
81: [10:56:05] 	 testIssue284 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue285 
81: [10:56:05] 	 testIssue285 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testIssue355 
81: [10:56:05] 	 testIssue355 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 testRandomCoords 
81: [10:56:05] 	 testRandomCoords 
81: 
81: 
81: [10:56:05] ERROR: CTAB version string invalid at line 306
81: [10:56:05] ERROR: CTAB version string invalid at line 306
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] ERROR: moving to the begining of the next molecule
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 1989539 
81: [10:56:05] 	 test sf.net issue 1989539 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2091864 
81: [10:56:05] 	 test sf.net issue 2091864 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test constrained embedding 
81: [10:56:05] 	 test constrained embedding 
81: 
81: 
81: [10:56:05] ssd: 0.051827
81: [10:56:05] ssd: 0.051827
81: [10:56:05] ssd: 0.0583638
81: [10:56:05] ssd: 0.0583638
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2091974 
81: [10:56:05] 	 test sf.net issue 2091974 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 2835784 
81: [10:56:05] 	 test sf.net issue 2835784 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3019283 
81: [10:56:05] 	 test sf.net issue 3019283 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3238580 
81: [10:56:05] 	 test sf.net issue 3238580 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test sf.net issue 3483968 
81: [10:56:05] 	 test sf.net issue 3483968 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test github issue 55 
81: [10:56:05] 	 test github issue 55 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test1 
81: [10:56:05] 	 test1 
81: 
81: 
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	---------------------------------
81: [10:56:05] 	 test multi-threading 
81: [10:56:05] 	 test multi-threading 
81: 
81: 
81: building molecules
81: building molecules
81: generating reference data
81: generating reference data
81: validating reference data
81: validating reference data
81: processing
81: processing
81:  launch :0
81:  launch :0
81:  launch :1
81:  launch :1
81:  launch :2
81:  launch :2
81:  launch :3
81:  launch :3
81: [10:56:14]   done
81: [10:56:14]   done
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	 test github issue 256: handling of zero-atom molecules
81: [10:56:14] 	 test github issue 256: handling of zero-atom molecules
81: 
81: 
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	---------------------------------
81: [10:56:14] 	 test multi-threaded multi-conf embedding 
81: [10:56:14] 	 test multi-threaded multi-conf embedding 
81: 
81: 
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	 test github issue 563: Incorrect ring stereochemistry after embedding
81: [10:56:15] 	 test github issue 563: Incorrect ring stereochemistry after embedding
81: 
81: 
81: CNC[C@H]1CC[C@H](C[NH3+])CC1
81: CNC[C@H]1CC[C@H](C[NH3+])CC1
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	---------------------------------
81: [10:56:15] 	 test github issue 568: Incorrect stereochemistry after embedding
81: [10:56:15] 	 test github issue 568: Incorrect stereochemistry after embedding
81: 
81: 
81: C1=NC[C@]2(CN3CC[C@@H]2C3)O1
81: C1=NC[C@]2(CN3CC[C@@H]2C3)O1
81: O=C(O)[C@@H]1[C@H]2CC[C@H](O2)[C@@H]1C(=O)O
81: O=C(O)[C@@H]1[C@H]2CC[C@H](O2)[C@@H]1C(=O)O
81: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@@H]21
81: O=C(CCc1ccccc1)OC[C@H]1C[C@@H]2O[C@H]1[C@H]1C(=O)OC(=O)[C@@H]21
81: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21
81: Cn1cc(C2=NC[C@]3(CN4CC[C@@H]3C4)O2)c2ccccc21
81: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O
81: Nc1ncnc2c1ncn2[C@@H]1C=C(CO)[C@@H](O)[C@H]1O
81: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CO[C@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CO[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CCS[C@@H]1[C@@H](N)[C@@H](O)[C@@H](O)[C@H]1O
81: CCCCC[C@H](O)/C=C/[C@]1(F)[C@@H](C/C=C\CCCC(=O)OC)[C@@H](O)C[C@H]1O
81: CCCCC[C@H](O)/C=C/[C@]1(F)[C@@H](C/C=C\CCCC(=O)OC)[C@@H](O)C[C@H]1O
81: CCCCC[C@@H](O)/C=C/[C@]1(F)[C@@H](O)C[C@@H](O)[C@H]1C/C=C\CCCC(=O)OC
81: CCCCC[C@@H](O)/C=C/[C@]1(F)[C@@H](O)C[C@@H](O)[C@H]1C/C=C\CCCC(=O)OC
81: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21
81: CNC(=O)Oc1cccc2c1OC[C@@H]1CCN(C)[C@H]21
81: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2
81: CNC(=O)Oc1ccc2c(c1)[C@@H]1[C@@H](CCN1C)CO2
81: CN1CC[C@H]2COc3c(O)cccc3[C@H]21
81: CN1CC[C@H]2COc3c(O)cccc3[C@H]21
81: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2
81: CC(=O)C[C@@]12CCC[C@H]1[C@@H]1CCC3=CC(=O)CC[C@@H]3[C@H]1CC2
81: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1
81: O=C(O)[C@@H]1C[C@H]2C[C@@H](CCc3nn[nH]n3)CC[C@H]2CN1
81: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O
81: COc1ccc2c(c1)OC[C@@H](N1CCC(O)(c3ccc(F)cc3)CC1)[C@H]2O
81: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O
81: Oc1ccc2c(c1)OC[C@@H](N1CCC(Cc3ccccc3)CC1)[C@H]2O
81: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O
81: Oc1ccc2c(c1)OC[C@H](N1CCC(O)(c3ccccc3)CC1)[C@@H]2O
81: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3
81: CC(=O)c1ccc2c(c1)[C@@]13CCCC[C@H]1[C@@H](C2)N(CC1CC1)CC3
81: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5
81: CC(=O)O[C@@H]1CC[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C1)OCO5
81: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2
81: COc1cc2c(cc1OC)[C@@H]1C[C@@H]3C[C@H](O)CC[C@@H]3CN1CC2
81: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5
81: N#C[C@@H]1C[C@@H]2CN3CCc4cc5c(cc4[C@@H]3C[C@@H]2C[C@@H]1O)OCO5
81: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1
81: COC(=O)[C@@H]1C[C@](C)(C(=O)O)NC(=O)N1
81: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1
81: CC(=O)OC1=C(Sc2ccccc2)C[C@H]2Cc3cc4cccc(O)c4c(O)c3C(=O)[C@H]2C1
81: Nc1ncnc2c1ncn2[C@H]1C[C@H](O)[C@@H](CO)C1
81: Nc1ncnc2c1ncn2[C@H]1C[C@H](O)[C@@H](CO)C1
81: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13
81: C[C@H](C(N)=O)N1CC[C@@]23CCCC[C@@H]2[C@@H]1Cc1ccc(OCc2cccc(F)c2)cc13
81: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12
81: CN1C(=O)CC[C@@]2(C)C1=CCc1cc(Cl)ccc12
81: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-]
81: Cc1nc(COc2ccc3c(c2)[C@@H](O)[C@@H](Cc2cccnc2)CO3)ccc1[N+](=O)[O-]
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system
81: [10:56:33] 	 test github issue 696: Bad 1-4 bounds matrix elements in highly constrained system
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 More ChEMBL molecules failing bounds smoothing.
81: [10:56:33] 	 More ChEMBL molecules failing bounds smoothing.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 ugly conformations can be generated for highly constrained ring systems.
81: [10:56:33] 	 ugly conformations can be generated for highly constrained ring systems.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test embed parameters structure.
81: [10:56:33] 	 test embed parameters structure.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 test github 1227: Hs being used in RMSD filtering.
81: [10:56:33] 	 test github 1227: Hs being used in RMSD filtering.
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	---------------------------------
81: [10:56:33] 	 Failure to embed larger aromatic rings.
81: [10:56:33] 	 Failure to embed larger aromatic rings.
81: [10:56:48] 	---------------------------------
81: [10:56:48] 	---------------------------------
81: [10:56:48] 	 Deterministic with large random seeds
81: [10:56:48] 	 Deterministic with large random seeds
81: [10:56:51] *******************************************************
81: [10:56:51] *******************************************************
 81/130 Test  #81: testDistGeomHelpers ................   Passed   46.78 sec
 81/130 Test  #81: testDistGeomHelpers ................   Passed   46.78 sec
test 82
test 82
        Start  82: pyDistGeom
        Start  82: pyDistGeom
82: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py"
82: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py"
82: Test timeout computed to be: 9.99988e+06
82: Test timeout computed to be: 9.99988e+06
82: ...........
82: ...........
82: ----------------------------------------------------------------------
82: ----------------------------------------------------------------------
82: Ran 11 tests in 11.698s
82: Ran 11 tests in 11.698s
82: 
82: 
82: OK
82: OK
 82/130 Test  #82: pyDistGeom .........................   Passed   11.92 sec
 82/130 Test  #82: pyDistGeom .........................   Passed   11.92 sec
test 83
test 83
        Start  83: testMolAlign
        Start  83: testMolAlign
83: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign
83: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/testMolAlign
83: Test timeout computed to be: 9.99988e+06
83: Test timeout computed to be: 9.99988e+06
83: ***********************************************************
83: ***********************************************************
83: Testing MolAlign
83: Testing MolAlign
83: 	---------------------------------
83: 	---------------------------------
83: 	 test1MolAlign 
83: 	 test1MolAlign 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 test1GetBestRMS 
83: 	 test1GetBestRMS 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 test1MolWithQueryAlign 
83: 	 test1MolWithQueryAlign 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 test2AtomMap 
83: 	 test2AtomMap 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 test3Weights 
83: 	 test3Weights 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testIssue241 
83: 	 testIssue241 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testMMFFO3A 
83: 	 testMMFFO3A 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testMMFFO3A with pre-computed dmat and MolHistogram
83: 	 testMMFFO3A with pre-computed dmat and MolHistogram
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testMMFFO3A with constraints
83: 	 testMMFFO3A with constraints
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testMMFFO3A with variable weight constraints followed by local-only optimization
83: 	 testMMFFO3A with variable weight constraints followed by local-only optimization
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testCrippenO3A 
83: 	 testCrippenO3A 
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testCrippenO3A with pre-computed dmat and MolHistogram
83: 	 testCrippenO3A with pre-computed dmat and MolHistogram
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testCrippenO3A with constraints
83: 	 testCrippenO3A with constraints
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: generating reference data
83: generating reference data
83: 	 testCrippenO3A with variable weight constraints followed by local-only optimization
83: 	 testCrippenO3A with variable weight constraints followed by local-only optimization
83: 
83: 
83: 	---------------------------------
83: 	---------------------------------
83: 	 testMMFFO3A multithreading
83: 	 testMMFFO3A multithreading
83: 
83: 
83: processing
83: processing
83:  launch :0
83:  launch :0
83:  launch :1
83:  launch :1
83:  launch :2
83:  launch :2
83:  launch :3
83:  launch :3
83: [10:57:07] Rep: 0 Mol:2
83: [10:57:07] Rep: 0 Mol:2
83: [10:57:07] Rep: 0 Mol:0
83: [10:57:07] Rep: 0 Mol:0
83: [10:57:07] Rep: 0 Mol:1
83: [10:57:07] Rep: 0 Mol:1
83: [10:57:07] Rep: 0 Mol:3
83: [10:57:07] Rep: 0 Mol:3
83: [[10:57:07] Rep: 0 Mol:7
83: [[10:57:07] Rep: 0 Mol:7
83: [10:57:07] Rep: 0 Mol:5
83: [10:57:07] Rep: 0 Mol:5
83: 10:57:07] Rep: 0 Mol:4
83: 10:57:07] Rep: 0 Mol:4
83: [10:57:07] Rep: 0 Mol:6
83: [10:57:07] Rep: 0 Mol:6
83: [10:57:07] Rep: 0 Mol:9
83: [10:57:07] Rep: 0 Mol:9
83: [10:57:07] Rep: 0 Mol:8
83: [10:57:07] Rep: 0 Mol:8
83: [10:57:07] Rep: 0 Mol:11
83: [10:57:07] Rep: 0 Mol:11
83: [10:57:07] Rep: 0 Mol:10
83: [10:57:07] Rep: 0 Mol:10
83: [10:57:07] Rep: 0 Mol:13
83: [10:57:07] Rep: 0 Mol:13
83: [10:57:07] Rep: 0 Mol:15
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83: [10:57:16] Rep: 20 Mol:49
83: [10:57:16] Rep: 20 Mol:49
83: [10:57:16] Rep: 20 Mol:22
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83: [10:57:16] Rep: 20 Mol:36
83: [10:57:16] Rep: 20 Mol:36
83: [10:57:16] Rep: 20 Mol:53
83: [10:57:16] Rep: 20 Mol:53
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83: [10:57:16] Rep: 20 Mol:40
83: [10:57:16] Rep: 20 Mol:26
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83: [10:57:16] Rep: 20 Mol:30
83: [10:57:16] Rep: 20 Mol:44
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83: [10:57:16] Rep: 20 Mol:48
83: [10:57:16] Rep: 20 Mol:34
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83: [10:57:16] Rep: 20 Mol:52
83: [10:57:16] Rep: 20 Mol:52
83: [10:57:16] Rep: 20 Mol:38
83: [10:57:16] Rep: 20 Mol:38
83: [10:57:16] Rep: 20 Mol:42
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83: [10:57:16] Rep: 20 Mol:46
83: [10:57:16] Rep: 20 Mol:46
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83: [10:57:16] Rep: 20 Mol:50
83: [10:57:16] Rep: 20 Mol:54
83: [10:57:16] Rep: 20 Mol:54
83: [10:57:20]   done
83: [10:57:20]   done
83: 	---------------------------------
83: 	---------------------------------
83: 	 test O3A multithreading bug
83: 	 test O3A multithreading bug
83: 
83: 
83: [10:57:45]   done
83: [10:57:45]   done
83: 	---------------------------------
83: 	---------------------------------
83: 	 testCrippenO3A multithreading
83: 	 testCrippenO3A multithreading
83: 
83: 
83: generating reference data
83: generating reference data
83: processing
83: processing
83:  launch :0
83:  launch :0
83:  launch :1
83:  launch :1
83:  launch :2
83:  launch :2
83:  launch :3
83:  launch :3
83: [10:57:46] Rep: 0 Mol:0
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83: [10[10:57:46] Rep: 0 Mol:19
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83: [10:57:48] Rep: 10 Mol:0
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83: [10:57:48] Rep: 10 Mol:31
83: [10:57:48] Rep: 10 Mol:1
83: [10:57:48] Rep: 10 Mol:1
83: [10:57:48] Rep: 10 Mol:35
83: [10:57:48] Rep: 10 Mol:35
83: [10:57:48] Rep: 10 Mol:5
83: [10:57:48] Rep: 10 Mol:5
83: [10:57:48] Rep: 10 Mol:9
83: [10:57:48] Rep: 10 Mol:9
83: [10:57:48] Rep: 10 Mol:39
83: [10:57:48] Rep: 10 Mol:39
83: [10:57:48] Rep: 10 Mol:13
83: [10:57:48] Rep: 10 Mol:13
83: [10:57:48] Rep: 10 Mol:43
83: [10:57:48] Rep: 10 Mol:43
83: [10:57:48] Rep: 10 Mol:47
83: [10:57:48] Rep: 10 Mol:47
83: [10:57:48] Rep: 10 Mol:17
83: [10:57:48] Rep: 10 Mol:17
83: [10:57:48] Rep: 10 Mol:51
83: [10:57:48] Rep: 10 Mol:51
83: [10:57:48] Rep: 10 Mol:21
83: [10:57:48] Rep: 10 Mol:21
83: [10:57:48] Rep: 10 Mol:55
83: [10:57:48] Rep: 10 Mol:55
83: [10:57:48] Rep: 10 Mol:2
83: [10:57:48] Rep: 10 Mol:2
83: [[10:57:48] Rep: 10 Mol:25
83: [[10:57:48] Rep: 10 Mol:25
83: 10:57:48] Rep: 10 Mol:6
83: 10:57:48] Rep: 10 Mol:6
83: [10:57:48] Rep: 10 Mol:10
83: [10:57:48] Rep: 10 Mol:10
83: [10:57:48] Rep: 10 Mol:29
83: [10:57:48] Rep: 10 Mol:29
83: [10:57:48] Rep: 10 Mol:14
83: [10:57:48] Rep: 10 Mol:14
83: [10:57:48] Rep: 10 Mol:33
83: [10:57:48] Rep: 10 Mol:33
83: [[10:57:48] Rep: 10 Mol:18
83: [[10:57:48] Rep: 10 Mol:18
83: 10:57:48] Rep: 10 Mol:37
83: 10:57:48] Rep: 10 Mol:37
83: [10:57:48] Rep: 10 Mol:22
83: [10:57:48] Rep: 10 Mol:22
83: [10:57:48] Rep: 10 Mol:26
83: [10:57:48] Rep: 10 Mol:26
83: [10:57:48] Rep: 10 Mol:41
83: [10:57:48] Rep: 10 Mol:41
83: [10:57:48] Rep: 10 Mol:30
83: [10:57:48] Rep: 10 Mol:30
83: [10:57:48] Rep: 10 Mol:45
83: [10:57:48] Rep: 10 Mol:45
83: [10:57:48] Rep: 10 Mol:49
83: [10:57:48] Rep: 10 Mol:49
83: [[10:57:48] Rep: 10 Mol:34
83: [[10:57:48] Rep: 10 Mol:34
83: 10:57:48] Rep: 10 Mol:53
83: 10:57:48] Rep: 10 Mol:53
83: [10:57:48] Rep: 10 Mol:38
83: [10:57:48] Rep: 10 Mol:38
83: [10:57:48] Rep: 10 Mol:42
83: [10:57:48] Rep: 10 Mol:42
83: [10:57:48] Rep: 10 Mol:46
83: [10:57:48] Rep: 10 Mol:46
83: [10:57:48] Rep: 10 Mol:50
83: [10:57:48] Rep: 10 Mol:50
83: [10:57:48] Rep: 10 Mol:54
83: [10:57:48] Rep: 10 Mol:54
83: [10:57:50] Rep: 20 Mol:0
83: [10:57:50] Rep: 20 Mol:0
83: [10:57:50] Rep: 20 Mol:4
83: [10:57:50] Rep: 20 Mol:4
83: [10:57:50] Rep: 20 Mol:3
83: [10:57:50] Rep: 20 Mol:3
83: [10:57:50] Rep: 20 Mol:8
83: [10:57:50] Rep: 20 Mol:8
83: [10:57:50] Rep: 20 Mol:7
83: [10:57:50] Rep: 20 Mol:7
83: [10:57:50] Rep: 20 Mol:12
83: [10:57:50] Rep: 20 Mol:12
83: [10:57:50] Rep: 20 Mol:11
83: [10:57:50] Rep: 20 Mol:11
83: [[10:57:50] Rep: 20 Mol:16
83: [[10:57:50] Rep: 20 Mol:16
83: 10:57:50] Rep: 20 Mol:15
83: 10:57:50] Rep: 20 Mol:15
83: [10:57:50] Rep: 20 Mol:20
83: [10:57:50] Rep: 20 Mol:20
83: [10:57:50] Rep: 20 Mol:19
83: [10:57:50] Rep: 20 Mol:19
83: [10:57:50] Rep: 20 Mol:24
83: [10:57:50] Rep: 20 Mol:24
83: [10:57:50] Rep: 20 Mol:23
83: [10:57:50] Rep: 20 Mol:23
83: [10:57:50] Rep: 20 Mol:28
83: [10:57:50] Rep: 20 Mol:28
83: [10:57:50] Rep: 20 Mol:27
83: [10:57:50] Rep: 20 Mol:27
83: [[10:57:50] Rep: 20 Mol:32
83: [[10:57:50] Rep: 20 Mol:32
83: 10:57:50] Rep: 20 Mol:31
83: 10:57:50] Rep: 20 Mol:31
83: [10:57:50] Rep: 20 Mol:36
83: [10:57:50] Rep: 20 Mol:36
83: [[10:57:50] Rep: 20 Mol:35
83: [[10:57:50] Rep: 20 Mol:35
83: [10:57:50] Rep: 20 Mol:40
83: [10:57:50] Rep: 20 Mol:40
83: 10:57:50] Rep: 20 Mol:39
83: 10:57:50] Rep: 20 Mol:39
83: [10:57:50] Rep: 20 Mol:44
83: [10:57:50] Rep: 20 Mol:44
83: [10:57:50] Rep: 20 Mol:48
83: [10:57:50] Rep: 20 Mol:48
83: [10:57:50] Rep: 20 Mol:43
83: [10:57:50] Rep: 20 Mol:43
83: [10:57:50] Rep: 20 Mol:47
83: [10:57:50] Rep: 20 Mol:47
83: [10:57:50] Rep: 20 Mol:1
83: [10:57:50] Rep: 20 Mol:1
83: [10:57:50] Rep: 20 Mol:52
83: [10:57:50] Rep: 20 Mol:52
83: [10:57:50] Rep: 20 Mol:5
83: [10:57:50] Rep: 20 Mol:5
83: [10:57:50] Rep: 20 Mol:51
83: [10:57:50] Rep: 20 Mol:51
83: [10:57:50] Rep: 20 Mol:9
83: [10:57:50] Rep: 20 Mol:9
83: [10:57:50] Rep: 20 Mol:55
83: [10:57:50] Rep: 20 Mol:55
83: [10:57:50] Rep: 20 Mol:13
83: [10:57:50] Rep: 20 Mol:13
83: [10:57:50] Rep: 20 Mol:17
83: [10:57:50] Rep: 20 Mol:17
83: [10:57:50] Rep: 20 Mol:21
83: [10:57:50] Rep: 20 Mol:21
83: [10:57:50] Rep: 20 Mol:25
83: [10:57:50] Rep: 20 Mol:25
83: [10:57:50] Rep: 20 Mol:29
83: [10:57:50] Rep: 20 Mol:29
83: [10:57:50] Rep: 20 Mol:33
83: [10:57:50] Rep: 20 Mol:33
83: [10:57:50] Rep: 20 Mol:37
83: [10:57:50] Rep: 20 Mol:37
83: [10:57:50] Rep: 20 Mol:41
83: [10:57:50] Rep: 20 Mol:41
83: [10:57:50] Rep: 20 Mol:2
83: [10:57:50] Rep: 20 Mol:2
83: [10:57:50] Rep: 20 Mol:45
83: [10:57:50] Rep: 20 Mol:45
83: [[10:57:50] Rep: 20 Mol:6
83: [[10:57:50] Rep: 20 Mol:6
83: [10:57:50] Rep: 20 Mol:10
83: [10:57:50] Rep: 20 Mol:10
83: 10:57:50] Rep: 20 Mol:49
83: 10:57:50] Rep: 20 Mol:49
83: [10:57:50] Rep: 20 Mol:53
83: [10:57:50] Rep: 20 Mol:53
83: [10:57:50] Rep: 20 Mol:14
83: [10:57:50] Rep: 20 Mol:14
83: [10:57:50] Rep: 20 Mol:18
83: [10:57:50] Rep: 20 Mol:18
83: [10:57:50] Rep: 20 Mol:22
83: [10:57:50] Rep: 20 Mol:22
83: [10:57:50] Rep: 20 Mol:26
83: [10:57:50] Rep: 20 Mol:26
83: [10:57:51] Rep: 20 Mol:30
83: [10:57:51] Rep: 20 Mol:30
83: [10:57:51] Rep: 20 Mol:34
83: [10:57:51] Rep: 20 Mol:34
83: [10:57:51] Rep: 20 Mol:38
83: [10:57:51] Rep: 20 Mol:38
83: [10:57:51] Rep: 20 Mol:42
83: [10:57:51] Rep: 20 Mol:42
83: [10:57:51] Rep: 20 Mol:46
83: [10:57:51] Rep: 20 Mol:46
83: [10:57:51] Rep: 20 Mol:50
83: [10:57:51] Rep: 20 Mol:50
83: [10:57:51] Rep: 20 Mol:54
83: [10:57:51] Rep: 20 Mol:54
83: [10:57:52]   done
83: [10:57:52]   done
83: 	---------------------------------
83: 	---------------------------------
83: 	 test getO3AForProbeConfs
83: 	 test getO3AForProbeConfs
83: 
83: 
83: [10:58:02]   done
83: [10:58:02]   done
83: 	---------------------------------
83: 	---------------------------------
83: 	 test O3A multithreading bug
83: 	 test O3A multithreading bug
83: 
83: 
83: [10:58:27]   done
83: [10:58:27]   done
83: ***********************************************************
83: ***********************************************************
 83/130 Test  #83: testMolAlign .......................   Passed   84.13 sec
 83/130 Test  #83: testMolAlign .......................   Passed   84.13 sec
test 84
test 84
        Start  84: pyMolAlign
        Start  84: pyMolAlign
84: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/testMolAlign.py"
84: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolAlign/Wrap/testMolAlign.py"
84: Test timeout computed to be: 9.99988e+06
84: Test timeout computed to be: 9.99988e+06
84: .................
84: .................
84: ----------------------------------------------------------------------
84: ----------------------------------------------------------------------
84: Ran 17 tests in 7.739s
84: Ran 17 tests in 7.739s
84: 
84: 
84: OK
84: OK
84: Testing MolAlign Wrappers
84: Testing MolAlign Wrappers
 84/130 Test  #84: pyMolAlign .........................   Passed    7.92 sec
 84/130 Test  #84: pyMolAlign .........................   Passed    7.92 sec
test 85
test 85
        Start  85: testFeatures
        Start  85: testFeatures
85: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures
85: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/testFeatures
85: Test timeout computed to be: 9.99988e+06
85: Test timeout computed to be: 9.99988e+06
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] AtomType parser testing.
85: [10:58:35] AtomType parser testing.
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]'
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[$([!$([NH0]);N,O,$([S]),$([N,O)])]'
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureDefinition parser testing.
85: [10:58:35] FeatureDefinition parser testing.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Test pulling feat defs from a string.
85: [10:58:35] Test pulling feat defs from a string.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureDef functionality testing.
85: [10:58:35] FeatureDef functionality testing.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] FeatureFactory testing.
85: [10:58:35] FeatureFactory testing.
85: [10:58:35] 1
85: [10:58:35] 1
85: [10:58:35] 2
85: [10:58:35] 2
85: [10:58:35] 3
85: [10:58:35] 3
85: [10:58:35] 4
85: [10:58:35] 4
85: [10:58:35] 5
85: [10:58:35] 5
85: [10:58:35] 6
85: [10:58:35] 6
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Feature Location testing.
85: [10:58:35] Feature Location testing.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Test building a FeatureFactory from a file
85: [10:58:35] Test building a FeatureFactory from a file
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 224.
85: [10:58:35] Testing Issue 224.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 225.
85: [10:58:35] Testing Issue 225.
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Test Issue346
85: [10:58:35] Test Issue346
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Test Issue347
85: [10:58:35] Test Issue347
85: [10:58:35]   done
85: [10:58:35]   done
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Issue 348.
85: [10:58:35] Testing Issue 348.
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[C[C]'
85: [10:58:35] SMARTS Parse Error: syntax error for input: '[C[C]'
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Nested AtomType definitions.
85: [10:58:35] Testing Nested AtomType definitions.
85: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])]
85: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])]
85: [10:58:35] -------------------------------------
85: [10:58:35] -------------------------------------
85: [10:58:35] Testing Github Issue #252: crash when calling getPos() with no conformer.
85: [10:58:35] Testing Github Issue #252: crash when calling getPos() with no conformer.
85: [10:58:35]      expect a precondition failure message below
85: [10:58:35]      expect a precondition failure message below
85: [10:58:35] 
85: [10:58:35] 
85: 
85: 
85: ****
85: ****
85: Pre-condition Violation
85: Pre-condition Violation
85: molecule has no conformers
85: molecule has no conformers
85: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
85: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
85: Failed Expression: dp_mol->getNumConformers()
85: Failed Expression: dp_mol->getNumConformers()
85: ****
85: ****
85: 
85: 
85: [10:58:35]    Done
85: [10:58:35]    Done
 85/130 Test  #85: testFeatures .......................   Passed    0.03 sec
 85/130 Test  #85: testFeatures .......................   Passed    0.03 sec
test 86
test 86
        Start  86: pyChemicalFeatures
        Start  86: pyChemicalFeatures
86: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py"
86: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py"
86: Test timeout computed to be: 9.99988e+06
86: Test timeout computed to be: 9.99988e+06
86: ....[10:58:35] SMARTS Parse Error: syntax error for input: '[N,O;!HQ]'
86: ....[10:58:35] SMARTS Parse Error: syntax error for input: '[N,O;!HQ]'
86: ...
86: ...
86: ----------------------------------------------------------------------
86: ----------------------------------------------------------------------
86: Ran 7 tests in 0.010s
86: Ran 7 tests in 0.010s
86: 
86: 
86: OK
86: OK
 86/130 Test  #86: pyChemicalFeatures .................   Passed    0.13 sec
 86/130 Test  #86: pyChemicalFeatures .................   Passed    0.13 sec
test 87
test 87
        Start  87: testShapeHelpers
        Start  87: testShapeHelpers
87: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers
87: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/testShapeHelpers
87: Test timeout computed to be: 9.99988e+06
87: Test timeout computed to be: 9.99988e+06
87: ***********************************************************
87: ***********************************************************
87: Testing ShapeHelpers
87: Testing ShapeHelpers
87: 	---------------------------------
87: 	---------------------------------
87: 	 test1Encode 
87: 	 test1Encode 
87: 
87: 
87: 	---------------------------------
87: 	---------------------------------
87: 	 test2Compare 
87: 	 test2Compare 
87: 
87: 
87: ***********************************************************
87: ***********************************************************
 87/130 Test  #87: testShapeHelpers ...................   Passed    0.02 sec
 87/130 Test  #87: testShapeHelpers ...................   Passed    0.02 sec
test 88
test 88
        Start  88: pyShapeHelpers
        Start  88: pyShapeHelpers
88: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py"
88: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py"
88: Test timeout computed to be: 9.99988e+06
88: Test timeout computed to be: 9.99988e+06
88: .
88: .
88: ----------------------------------------------------------------------
88: ----------------------------------------------------------------------
88: Ran 1 test in 0.029s
88: Ran 1 test in 0.029s
88: 
88: 
88: OK
88: OK
88: Testing Shape Helpers wrapper
88: Testing Shape Helpers wrapper
 88/130 Test  #88: pyShapeHelpers .....................   Passed    0.15 sec
 88/130 Test  #88: pyShapeHelpers .....................   Passed    0.15 sec
test 89
test 89
        Start  89: testMolCatalog
        Start  89: testMolCatalog
89: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/testMolCatalog
89: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/testMolCatalog
89: Test timeout computed to be: 9.99988e+06
89: Test timeout computed to be: 9.99988e+06
89: [10:58:36] >>------------- Test 1
89: [10:58:36] >>------------- Test 1
89: [10:58:36] <<-------------- Done
89: [10:58:36] <<-------------- Done
 89/130 Test  #89: testMolCatalog .....................   Passed    0.01 sec
 89/130 Test  #89: testMolCatalog .....................   Passed    0.01 sec
test 90
test 90
        Start  90: pyMolCatalog
        Start  90: pyMolCatalog
90: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rough_test.py"
90: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolCatalog/Wrap/rough_test.py"
90: Test timeout computed to be: 9.99988e+06
90: Test timeout computed to be: 9.99988e+06
90: .
90: .
90: ----------------------------------------------------------------------
90: ----------------------------------------------------------------------
90: Ran 1 test in 0.007s
90: Ran 1 test in 0.007s
90: 
90: 
90: OK
90: OK
 90/130 Test  #90: pyMolCatalog .......................   Passed    0.11 sec
 90/130 Test  #90: pyMolCatalog .......................   Passed    0.11 sec
test 91
test 91
        Start  91: moldraw2DTest1
        Start  91: moldraw2DTest1
91: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DTest1
91: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DTest1
91: Test timeout computed to be: 9.99988e+06
91: Test timeout computed to be: 9.99988e+06
91:  ----------------- Test 1
91:  ----------------- Test 1
91:  Done
91:  Done
91:  ----------------- Test 2
91:  ----------------- Test 2
91:  Done
91:  Done
91:  ----------------- Test 4
91:  ----------------- Test 4
91:  Done
91:  Done
91:  ----------------- Test 5
91:  ----------------- Test 5
91:  Done
91:  Done
91:  ----------------- Test 6 (atom labels)
91:  ----------------- Test 6 (atom labels)
91:  Done
91:  Done
91:  ----------------- Test 7 (backgrounds)
91:  ----------------- Test 7 (backgrounds)
91:  Done
91:  Done
91:  ----------------- Test8: PrepareMolDrawing
91:  ----------------- Test8: PrepareMolDrawing
91:  Done
91:  Done
91:  ----------------- Test multi-threaded drawing
91:  ----------------- Test multi-threaded drawing
91: reading molecules
91: reading molecules
91: generating reference drawings
91: generating reference drawings
91: processing
91: processing
91:  launch :0
91:  launch :0
91:  launch :1
91:  launch :1
91:  launch :2
91:  launch :2
91:  launch :3
91:  launch :3
91:  ----------------- Test Github #781: Rendering single-atom molecules
91:  ----------------- Test Github #781: Rendering single-atom molecules
91:  Done
91:  Done
91:  ----------------- Test 3
91:  ----------------- Test 3
91:  Done
91:  Done
91:  Done
91:  Done
91:  ----------------- Test Github774
91:  ----------------- Test Github774
91:  Done
91:  Done
91:  ----------------- Test 9 (molecule legends)
91:  ----------------- Test 9 (molecule legends)
91:  Done
91:  Done
91:  ----------------- Test Github852: Lines used to wedge bonds are too thick
91:  ----------------- Test Github852: Lines used to wedge bonds are too thick
91:  Done
91:  Done
91:  ----------------- Test Github860: Atom symbols in wrong order if bond comes from right
91:  ----------------- Test Github860: Atom symbols in wrong order if bond comes from right
91:  Done
91:  Done
91:  ----------------- Test Github #910: ugly coordinates generated for peptide chains
91:  ----------------- Test Github #910: ugly coordinates generated for peptide chains
91:  Done
91:  Done
91:  ----------------- Test Github #932: mistake in SVG for wedged bonds
91:  ----------------- Test Github #932: mistake in SVG for wedged bonds
91:  Done
91:  Done
91:  ----------------- Test Github #953: default color should not be cyan
91:  ----------------- Test Github #953: default color should not be cyan
91:  Done
91:  Done
91:  ----------------- Test Github #983: wedged bonds between chiral centers drawn improperly
91:  ----------------- Test Github #983: wedged bonds between chiral centers drawn improperly
91:  Done
91:  Done
91:  ----------------- Test Deuterium, Tritium
91:  ----------------- Test Deuterium, Tritium
91:  Done
91:  Done
91:  ----------------- Test crossed bonds
91:  ----------------- Test crossed bonds
91:  Done
91:  Done
91:  ----------------- Testing drawing a second molecule
91:  ----------------- Testing drawing a second molecule
91:  Done
91:  Done
91:  ----------------- Testing drawing a grid of molecules
91:  ----------------- Testing drawing a grid of molecules
91:  Done
91:  Done
91:  ----------------- Testing drawMolecules
91:  ----------------- Testing drawMolecules
91:  Done
91:  Done
91:  ----------------- Test JSON Configuration
91:  ----------------- Test JSON Configuration
91:  Done
91:  Done
91:  ----------------- Testing github 1090: escape html characters in SVG output
91:  ----------------- Testing github 1090: escape html characters in SVG output
91:  Done
91:  Done
91:  ----------------- Testing github 1035: overflow bug in SVG color generation
91:  ----------------- Testing github 1035: overflow bug in SVG color generation
91:  Done
91:  Done
91:  ----------------- Testing github 1271: MolDraw2D not drawing anything for molecules aligned with the X or Y axes
91:  ----------------- Testing github 1271: MolDraw2D not drawing anything for molecules aligned with the X or Y axes
91:  Done
91:  Done
91:  ----------------- Testing github 1322: add custom atom labels
91:  ----------------- Testing github 1322: add custom atom labels
91:  Done
91:  Done
91:  ----------------- Testing github 565: support a fixed bond length in the MolDraw2D code
91:  ----------------- Testing github 565: support a fixed bond length in the MolDraw2D code
91:  Done
91:  Done
91:  ----------------- Testing use of a black & white palette
91:  ----------------- Testing use of a black & white palette
91:  Done
91:  Done
91:  ----------------- Testing use of continuous highlighting with drawMolecules
91:  ----------------- Testing use of continuous highlighting with drawMolecules
91:  Done
91:  Done
 91/130 Test  #91: moldraw2DTest1 .....................   Passed    1.82 sec
 91/130 Test  #91: moldraw2DTest1 .....................   Passed    1.82 sec
test 92
test 92
        Start  92: moldraw2DRxnTest1
        Start  92: moldraw2DRxnTest1
92: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1
92: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/moldraw2DRxnTest1
92: Test timeout computed to be: 9.99988e+06
92: Test timeout computed to be: 9.99988e+06
92:  ----------------- Test 1
92:  ----------------- Test 1
92:  Done
92:  Done
92:  ----------------- Test 2: some examples that caused problems in testing
92:  ----------------- Test 2: some examples that caused problems in testing
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>CC(C)[c:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1	CN1CCC(CC1)N(C)S(=O)(=O)c2ccccc2	CC(C)c1ccc(cc1)S(=O)(=O)N(C)C2CCN(CC2)C
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>CC(C)[c:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1	CN1CCC(CC1)N(C)S(=O)(=O)c2ccccc2	CC(C)c1ccc(cc1)S(=O)(=O)N(C)C2CCN(CC2)C
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>[cH:3]1[cH:2][c:1]([cH:6][cH:5][c:4]1)Cl	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccccc4	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccc(cc4)Cl
92: 3 [cH:1]1[cH:2][cH:3][c:4][cH:5][cH:6]1>>[cH:3]1[cH:2][c:1]([cH:6][cH:5][c:4]1)Cl	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccccc4	Cc1cccc(c1C)N2CCN(CC2)CCCNC(=O)c3cc([nH]c3C)c4ccc(cc4)Cl
92: 2 Cc1c(cc([nH]1)[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]>>CCc1nc(c(n1[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)C)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]	Cc1c(cc([nH]1)c2ccccc2)C(=O)NCCN3CCN(C
92: 2 Cc1c(cc([nH]1)[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]>>CCc1nc(c(n1[c:1]2[cH:2][cH:3][cH:4][cH:5][cH:6]2)C)[C:7](=[O:8])[NH:9][CH2:10][CH2:11]	Cc1c(cc([nH]1)c2ccccc2)C(=O)NCCN3CCN(C
92: 2 C3)c4cccc(c4Cl)Cl	CCc1nc(c(n1c2ccccc2)C)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl
92: 2 C3)c4cccc(c4Cl)Cl	CCc1nc(c(n1c2ccccc2)C)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl
92: 3 [c:1][C:2](=[O:3])[NH:4]CCC[CH2:5][N:6]([CH2:7])[CH2:8]>>[c:1][C:2](=[O:3])[NH:4]C[CH2:5][N:6]([CH2:7])[CH2:8]	CCCn1c(c(cc1c2ccccc2)C(=O)NCCCCN3CCN(CC3)c4cccc(c4Cl)Cl)C	CCCn1c(c(cc1c2ccccc2)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl)C
92: 3 [c:1][C:2](=[O:3])[NH:4]CCC[CH2:5][N:6]([CH2:7])[CH2:8]>>[c:1][C:2](=[O:3])[NH:4]C[CH2:5][N:6]([CH2:7])[CH2:8]	CCCn1c(c(cc1c2ccccc2)C(=O)NCCCCN3CCN(CC3)c4cccc(c4Cl)Cl)C	CCCn1c(c(cc1c2ccccc2)C(=O)NCCN3CCN(CC3)c4cccc(c4Cl)Cl)C
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: [10:58:38] non-ring atom 0 marked aromatic
92: 3 [CH3:1]c1c(cc(n1[CH3:2])C(C)(C)C)[C:3]>>[CH3:2]c1c(c(nc(n1)[CH3:1])[C:3])OC	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3cc(n(c3C)C)C(C)(C)C	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3c(c(nc(n3)C)C)OC
92: 3 [CH3:1]c1c(cc(n1[CH3:2])C(C)(C)C)[C:3]>>[CH3:2]c1c(c(nc(n1)[CH3:1])[C:3])OC	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3cc(n(c3C)C)C(C)(C)C	Cc1cccc(c1C)N2CCN(CC2)CCNC(=O)c3c(c(nc(n3)C)C)OC
92:  Done
92:  Done
92:  ----------------- Test 3: test reactant highlighting
92:  ----------------- Test 3: test reactant highlighting
92:  Done
92:  Done
92:  ----------------- Test 4: some examples from SMARTS in testing
92:  ----------------- Test 4: some examples from SMARTS in testing
92: draw!
92: draw!
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: 
92: 
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8
92: 
92: 
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 1 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Explicit valence for atom # 13 N, 4, is greater than permitted
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4 5 6 7 8 9
92: 
92: 
92:  done
92:  done
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: [10:58:38] Can't kekulize mol.  Unkekulized atoms: 2 3 4 5 6 7
92: 
92: 
92:  Done
92:  Done
 92/130 Test  #92: moldraw2DRxnTest1 ..................   Passed    0.22 sec
 92/130 Test  #92: moldraw2DRxnTest1 ..................   Passed    0.22 sec
test 93
test 93
        Start  93: pyMolDraw2D
        Start  93: pyMolDraw2D
93: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
93: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
93: Test timeout computed to be: 9.99988e+06
93: Test timeout computed to be: 9.99988e+06
93: ..............
93: ..............
93: ----------------------------------------------------------------------
93: ----------------------------------------------------------------------
93: Ran 14 tests in 0.019s
93: Ran 14 tests in 0.019s
93: 
93: 
93: OK
93: OK
 93/130 Test  #93: pyMolDraw2D ........................   Passed    0.19 sec
 93/130 Test  #93: pyMolDraw2D ........................   Passed    0.19 sec
test 94
test 94
        Start  94: testFMCS
        Start  94: testFMCS
94: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS
94: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/testFMCS
94: Test timeout computed to be: 9.99988e+06
94: Test timeout computed to be: 9.99988e+06
94: [10:58:38] *******************************************************
94: [10:58:38] *******************************************************
94: [10:58:38] FMCS Unit Test 
94: [10:58:38] FMCS Unit Test 
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testJSONParameters
94: [10:58:38] Testing FMCS testJSONParameters
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] FMCS test1Basics()
94: [10:58:38] FMCS test1Basics()
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test32
94: [10:58:38] Testing FMCS test32
94: 
94: 
94:  test32()
94:  test32()
94: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
94: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
94: Time elapsed 0.079 seconds
94: Time elapsed 0.079 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test190
94: [10:58:38] Testing FMCS test190
94: 
94: 
94:  test190()
94:  test190()
94: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](-[#6]3:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:3):[#7]:[#6]:2:[#6]:[#6]:1 19 atoms, 21 bonds
94: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](-[#6]3:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:3):[#7]:[#6]:2:[#6]:[#6]:1 19 atoms, 21 bonds
94: Time elapsed 0.014 seconds
94: Time elapsed 0.014 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test3
94: [10:58:38] Testing FMCS test3
94: 
94: 
94:  test3()
94:  test3()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
94: Time elapsed 0.019 seconds
94: Time elapsed 0.019 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSimpleFast
94: [10:58:38] Testing FMCS testSimpleFast
94: 
94: 
94: testSimpleFast()
94: testSimpleFast()
94: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
94: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
94: Time elapsed 0.142 seconds
94: Time elapsed 0.142 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSimple
94: [10:58:38] Testing FMCS testSimple
94: 
94: 
94: testSimple()
94: testSimple()
94: MCS: [#6]-[#6]-[#6](-[#7]-[#6](=[#8])-[#6]-[#7]-[#6](=[#8])-[#6])-[#6](-[#7]-[#6])=[#8] 15 atoms, 14 bonds
94: MCS: [#6]-[#6]-[#6](-[#7]-[#6](=[#8])-[#6]-[#7]-[#6](=[#8])-[#6])-[#6](-[#7]-[#6])=[#8] 15 atoms, 14 bonds
94: Time elapsed 0.165 seconds
94: Time elapsed 0.165 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testSegFault
94: [10:58:38] Testing FMCS testSegFault
94: 
94: 
94: testSegFault()
94: testSegFault()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1 6 atoms, 6 bonds
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1 6 atoms, 6 bonds
94: Time elapsed 0.004 seconds
94: Time elapsed 0.004 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testThreshold
94: [10:58:38] Testing FMCS testThreshold
94: 
94: 
94: testThreshold()
94: testThreshold()
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: Time elapsed 0.000 seconds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testRing1
94: [10:58:38] Testing FMCS testRing1
94: 
94: 
94: testRing1()
94: testRing1()
94: MCS: [#6]1:[#6]:[#7]:[#6](:[#6]:[#6]:1)-[#6](=[#8])-[#8]-[#6](-[#6])-[#6] 12 atoms, 12 bonds
94: MCS: [#6]1:[#6]:[#7]:[#6](:[#6]:[#6]:1)-[#6](=[#8])-[#8]-[#6](-[#6])-[#6] 12 atoms, 12 bonds
94: Time elapsed 0.003 seconds
94: Time elapsed 0.003 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareIsotopes
94: [10:58:38] Testing FMCS testAtomCompareIsotopes
94: 
94: 
94: testAtomCompareIsotopes()
94: testAtomCompareIsotopes()
94: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
94: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
94: Time elapsed 0.000 seconds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareAnyAtom
94: [10:58:38] Testing FMCS testAtomCompareAnyAtom
94: 
94: 
94: testAtomCompareAnyAtom()
94: testAtomCompareAnyAtom()
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS testAtomCompareAnyAtomBond
94: [10:58:38] Testing FMCS testAtomCompareAnyAtomBond
94: 
94: 
94: testAtomCompareAnyAtom()
94: testAtomCompareAnyAtom()
94: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
94: Time elapsed 0.000 seconds
94: Time elapsed 0.000 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test18
94: [10:58:38] Testing FMCS test18
94: 
94: 
94: test18()
94: test18()
94: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
94: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH:6]([CH3:7])[c:8]2[n:9][cH:10][cH:11][cH:12][cH:13]2)[CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[cH:19][cH:20][cH:21]1
94: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
94: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
94: Time elapsed 0.008 seconds
94: Time elapsed 0.008 seconds
94: [10:58:38] 	done
94: [10:58:38] 	done
94: [10:58:38] -------------------------------------
94: [10:58:38] -------------------------------------
94: [10:58:38] Testing FMCS test504
94: [10:58:38] Testing FMCS test504
94: 
94: 
94: test504()
94: test504()
94: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
94: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4]([CH:5]1[CH2:6][CH:7]1[c:8]1[c:9][c:10]([Cl:11])[c:12]([Cl:13])[cH:14][c:15]1)=[O:16])[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
94: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
94: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
94: Time elapsed 0.101 seconds
94: Time elapsed 0.101 seconds
94: [10:58:39] 	done
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: [10:58:39] FMCS testInitialSeed()
94: [10:58:39] FMCS testInitialSeed()
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
94: Time elapsed 0.001 seconds
94: Time elapsed 0.001 seconds
94: [10:58:39] 	done
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: [10:58:39] FMCS testInitialSeed2()
94: [10:58:39] FMCS testInitialSeed2()
94: [10:58:39] initial_smarts: CCNCCNcccccccnC1CC1
94: [10:58:39] initial_smarts: CCNCCNcccccccnC1CC1
94: [10:58:39] RDKit MATCHED Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1
94: [10:58:39] RDKit MATCHED Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1
94: [10:58:39] RDKit MATCHED COc1c(N2CCNC(C)C2)c(F)cc2c(=O)c(C(=O)O)cn(C3CC3)c12
94: [10:58:39] RDKit MATCHED COc1c(N2CCNC(C)C2)c(F)cc2c(=O)c(C(=O)O)cn(C3CC3)c12
94: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: Time elapsed 0.028 seconds
94: Time elapsed 0.028 seconds
94: [10:58:39] 
94: [10:58:39] 
94: 
94: 
94: Found MCS as the only initial seed (25 atoms, 28 bonds): 
94: Found MCS as the only initial seed (25 atoms, 28 bonds): 
94: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6]
94: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6]
94: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
94: Query Cc1c(F)c(N2CCNC(C)C2)cc2c1c(=O)c(C(=O)O)cn2C1CC1 26(26) atoms, 29(28) bonds
94: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0014 seconds. bond[0]=6
94: 1 Seeds:1 MCS 25 atoms, 28 bonds for 0.0014 seconds. bond[0]=6
94: STATISTICS:
94: STATISTICS:
94: Total Growing Steps  = 1, MCS found on 1 step, for 0.0014 seconds
94: Total Growing Steps  = 1, MCS found on 1 step, for 0.0014 seconds
94: Initial   Seeds      = 1,  Mismatched 0
94: Initial   Seeds      = 1,  Mismatched 0
94: Inspected Seeds      = 2
94: Inspected Seeds      = 2
94: Rejected by BestSize = 0
94: Rejected by BestSize = 0
94: SingleBondExcluded   = 0
94: SingleBondExcluded   = 0
94: MatchCheck Seeds     = 2
94: MatchCheck Seeds     = 2
94:      MatchCalls = 2
94:      MatchCalls = 2
94:      MatchFound = 1
94:      MatchFound = 1
94:  fastMatchCalls = 1
94:  fastMatchCalls = 1
94:  fastMatchFound = 0
94:  fastMatchFound = 0
94:  slowMatchCalls = 2
94:  slowMatchCalls = 2
94:  slowMatchFound = 1
94:  slowMatchFound = 1
94:   DupCacheFound = 0   0 matched, 0 mismatched
94:   DupCacheFound = 0   0 matched, 0 mismatched
94: HashCache size  = 1 keys
94: HashCache size  = 1 keys
94: HashCache size  = 1 entries
94: HashCache size  = 1 entries
94: FindHashInCache = 2
94: FindHashInCache = 2
94: HashFoundInCache= 0
94: HashFoundInCache= 0
94: ExactMatchCalls = 0
94: ExactMatchCalls = 0
94: ExactMatchFound = 0
94: ExactMatchFound = 0
94: [10:58:39] MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: [10:58:39] MCS: [#6]1-[#6]-[#7]-[#6](-[#6]-[#7]-1-[#6]1:[#6](:[#6]:[#6]2:[#6](:[#6](:[#6]:[#7](-[#6]3-[#6]-[#6]-3):[#6]:2:[#6]:1)-[#6](=[#8])-[#8])=[#8])-[#9])-[#6] 25 atoms, 28 bonds
94: Time elapsed 0.002 seconds
94: Time elapsed 0.002 seconds
94: [10:58:39] 	done
94: [10:58:39] 	done
94: [10:58:39] 
94: [10:58:39] 
94: -------------------------------------
94: -------------------------------------
94: [10:58:39] Testing github #481 : order dependence in FMCS with chirality
94: [10:58:39] Testing github #481 : order dependence in FMCS with chirality
94: [10:58:39] **** mols:O[C@H](C)Cl   O[C@@H](C)Cl
94: [10:58:39] **** mols:O[C@H](C)Cl   O[C@@H](C)Cl
94: query=OCCl SubstructMatch(useChirality=false) res =1 size=3
94: query=OCCl SubstructMatch(useChirality=false) res =1 size=3
94: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
94: query=OCCl SubstructMatch(useChirality=true ) res =1 size=3
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] MCS: [#8]-[#6]-[#17] 3 atoms, 2 bonds
94: [10:58:39] **** mols:OC(C)Cl   O[C@H](C)Cl
94: [10:58:39] **** mols:OC(C)Cl   O[C@H](C)Cl
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] ------ REVERSE mols -------- 
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#8]-[#6](-[#6])-[#17] 4 atoms, 3 bonds
94: [10:58:39] MCS:  0 atoms, 0 bonds
94: [10:58:39] MCS:  0 atoms, 0 bonds
94: [10:58:39] 	done
94: [10:58:39] 	done
94: [10:58:39] 
94: [10:58:39] 
94: -------------------------------------
94: -------------------------------------
94: [10:58:39] Testing FMCS testChirality
94: [10:58:39] Testing FMCS testChirality
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
94: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CCC useChirality = 0
94: test target = CC[C@H](F)Cl query = CCC useChirality = 0
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CCC useChirality = 1
94: test target = CC[C@H](F)Cl query = CCC useChirality = 1
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CCC(F)Cl query = CC useChirality = 0
94: test target = CCC(F)Cl query = CC useChirality = 0
94: res sub = 1 size=2
94: res sub = 1 size=2
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CCC(F)Cl query = CC useChirality = 1
94: test target = CCC(F)Cl query = CC useChirality = 1
94: res sub = 1 size=2
94: res sub = 1 size=2
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: MCS: [#6]-[#6] 2 atoms, 1 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
94: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
94: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
94: res sub = 0 size=0
94: res sub = 0 size=0
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
94: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
94: res sub = 0 size=0
94: res sub = 0 size=0
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
94: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
94: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
94: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
94: res sub = 0 size=0
94: res sub = 0 size=0
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = OC(F)C useChirality = 0
94: test target = OC(F)CCl query = OC(F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = OC(F)C useChirality = 1
94: test target = OC(F)CCl query = OC(F)C useChirality = 1
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
94: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
94: res sub = 0 size=0
94: res sub = 0 size=0
94: MCS:  0 atoms, 0 bonds
94: MCS:  0 atoms, 0 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
94: res sub = 1 size=4
94: res sub = 1 size=4
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
94: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
94: res sub = 0 size=0
94: res sub = 0 size=0
94: MCS:  0 atoms, 0 bonds
94: MCS:  0 atoms, 0 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
94: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
94: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
94: 
94: 
94: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
94: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
94: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
94: res sub = 1 size=3
94: res sub = 1 size=3
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
94: 	done
94: 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: [10:58:39] Testing github issue 631: FindMCS matchChiralTag=True does not match self
94: [10:58:39] Testing github issue 631: FindMCS matchChiralTag=True does not match self
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: [10:58:39] MCS: [#6]1-[#6]=[#6]-[#6]-[#7]-1-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 11 atoms, 12 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: [10:58:39] MCS: [#6]-[#6]1:[#6]:[#6]2:[#6](:[#6]:[#6]:1-[#6])-[#6](=[#8])-[#7](-[#6]-2=[#8])-[#6]1-[#6]-[#6]-[#6](-[#7]-[#6]-1=[#8])=[#8] 21 atoms, 23 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: [10:58:39] MCS: [#6]-[#7](-[#6])-[#6]1-[#6]-[#6]-[#6]-[#7]-[#6]-1 9 atoms, 9 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] 	done
94: [10:58:39] 	done
94: [10:58:39] -------------------------------------
94: [10:58:39] -------------------------------------
94: [10:58:39] Testing including formal charge in matches 
94: [10:58:39] Testing including formal charge in matches 
94: [10:58:39] MCS: [#6]-[#6]-[#7]-[#6] 4 atoms, 3 bonds
94: [10:58:39] MCS: [#6]-[#6]-[#7]-[#6] 4 atoms, 3 bonds
94: 
94: 
94: [10:58:39] MCS: [#6]-[#6] 2 atoms, 1 bonds
94: [10:58:39] MCS: [#6]-[#6] 2 atoms, 1 bonds
94: 
94: 
94: [10:58:39] ============================================
94: [10:58:39] ============================================
94: [10:58:39] 	done
94: [10:58:39] 	done
94: TOTAL Time elapsed 0.64 seconds
94: TOTAL Time elapsed 0.64 seconds
94: [10:58:39] *******************************************************
94: [10:58:39] *******************************************************
 94/130 Test  #94: testFMCS ...........................   Passed    0.65 sec
 94/130 Test  #94: testFMCS ...........................   Passed    0.65 sec
test 95
test 95
        Start  95: pyFMCS
        Start  95: pyFMCS
95: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/testFMCS.py"
95: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Wrap/testFMCS.py"
95: Test timeout computed to be: 9.99988e+06
95: Test timeout computed to be: 9.99988e+06
95: ..........
95: ..........
95: ----------------------------------------------------------------------
95: ----------------------------------------------------------------------
95: Ran 10 tests in 0.405s
95: Ran 10 tests in 0.405s
95: 
95: 
95: OK
95: OK
 95/130 Test  #95: pyFMCS .............................   Passed    0.52 sec
 95/130 Test  #95: pyFMCS .............................   Passed    0.52 sec
test 96
test 96
        Start  96: FMCStest
        Start  96: FMCStest
96: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/FMCStest
96: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/FMCS/Test/FMCStest
96: Test timeout computed to be: 9.99988e+06
96: Test timeout computed to be: 9.99988e+06
96: fopen testChEMBL_Txt(): No such file or directory
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96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_15113.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_15113.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_16613.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_16613.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30745.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30745.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30861.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_30861.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_31495.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_31495.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_34869.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_34869.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36559.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_36559.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_37434.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_37434.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_39147.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_39147.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_43754.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_43754.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44011.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44011.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_44158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48076.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48076.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48961.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_48961.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49648.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49648.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49703.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_49703.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51128.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51128.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51343.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51343.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51842.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_51842.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_54554.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_54554.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_55749.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_100_55749.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_17256.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_17256.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20244.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20244.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20245.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20245.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30149.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30149.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30499.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30499.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_36186.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_36186.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_39262.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_39262.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_43966.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_43966.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_45279.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_45279.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_48029.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_48029.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49064.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49064.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49801.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49801.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_50681.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_50681.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_54039.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_54039.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58265.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58265.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58358.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58358.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58866.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58866.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_60810.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10188_60810.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21358.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21358.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21597.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21597.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30111.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30111.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31746.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31746.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31822.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31822.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_35220.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_35220.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37603.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37603.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37964.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37964.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_39508.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_39508.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42164.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42164.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42577.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42577.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_44072.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_44072.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_45522.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_45522.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46700.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46700.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46719.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46719.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46744.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46744.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_48517.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_48517.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_49087.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_49087.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_50034.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_50034.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_51475.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_51475.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53483.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53483.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53506.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53506.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_54598.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_54598.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55614.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55614.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55737.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55737.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57090.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57090.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57705.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57705.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57785.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57785.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58463.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58463.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58700.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58700.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61003.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61003.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_38526.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_38526.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_50778.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_50778.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_52179.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_52179.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_54285.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10260_54285.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_30224.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_30224.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_31222.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_31222.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37369.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37369.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37465.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37465.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37541.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37541.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_38371.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_38371.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44314.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44314.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44578.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44578.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_45765.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_45765.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_46281.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_46281.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_47928.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_47928.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_50624.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_50624.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51341.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51341.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51662.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51662.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51767.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51767.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53081.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53081.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53396.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53396.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53407.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53407.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_58823.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_58823.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_59190.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_59190.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_60672.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_60672.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_61176.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10280_61176.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_20905.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_20905.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30074.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30074.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30175.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30175.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30423.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30423.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_31555.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_31555.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_34878.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_34878.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_35926.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_35926.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_42168.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10434_42168.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_20859.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_20859.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30060.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30060.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30061.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30061.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30606.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30606.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30866.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_30866.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_31249.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_31249.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_34921.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_34921.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_35188.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_35188.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_36636.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_36636.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_37466.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_37466.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_39202.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_39202.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_43952.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_43952.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49345.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49345.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49591.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49591.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49854.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_49854.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_51416.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_51416.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_53537.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_53537.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_58879.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_58879.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_60679.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_60679.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_61269.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_107_61269.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20600.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20600.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20859.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_20859.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30060.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30060.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30606.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30606.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30866.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_30866.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_31558.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_31558.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_35188.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_35188.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_37466.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_37466.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_43875.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_43875.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_48911.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_48911.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49591.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49591.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49854.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_49854.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_57887.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_57887.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_60679.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_60679.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_6857.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_108_6857.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_15478.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_15478.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_20853.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_20853.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30840.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30840.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30862.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30862.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30918.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30918.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30994.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30994.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31014.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31014.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31508.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31508.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31623.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31623.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35003.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35003.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35004.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35004.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35281.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35281.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35957.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35957.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36520.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36520.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36641.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36641.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_38586.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_38586.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_44431.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_44431.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_45093.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_45093.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_51302.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_51302.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5247.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5247.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_52937.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_52937.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_57198.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_57198.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5739.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5739.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_6535.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_10980_6535.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20205.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20205.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20986.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20986.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_30091.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_30091.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34698.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34698.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34705.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34705.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37038.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37038.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37272.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37272.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37447.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37447.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38909.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38909.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38953.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38953.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_39472.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_39472.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_45825.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_45825.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_47179.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_47179.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49028.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49028.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49860.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49860.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_51984.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_51984.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53395.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53395.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53826.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53826.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54121.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54121.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54530.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54530.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_55738.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_55738.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_57725.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_57725.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_58590.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11140_58590.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_20432.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_20432.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_30331.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_30331.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_37956.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_37956.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_48114.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_48114.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_58566.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11365_58566.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34731.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34731.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34818.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34818.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37318.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37318.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37339.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37339.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37564.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37564.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39504.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39504.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39561.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39561.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46082.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46082.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46089.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46089.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47757.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47757.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_51593.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_51593.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_54754.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_54754.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58262.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58262.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58958.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58958.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_16827.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_16827.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20503.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20503.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20724.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_20724.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30254.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30254.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30321.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30321.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30572.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_30572.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31116.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31116.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31281.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31281.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31443.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_31443.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34747.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34747.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34920.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_34920.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_35040.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_35040.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_36623.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_36623.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37136.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37136.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37208.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_37208.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38298.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38298.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38554.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_38554.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39088.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39088.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39543.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_39543.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44049.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44049.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44562.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_44562.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45180.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45180.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45867.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_45867.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46087.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46087.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46829.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_46829.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_47546.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_47546.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_48395.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_48395.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50461.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50461.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50765.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_50765.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_51669.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_51669.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_52381.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_52381.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_57231.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_57231.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_58246.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_114_58246.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_30999.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_30999.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31021.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31021.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31650.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31650.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_35011.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_35011.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_37014.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_37014.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_44598.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_44598.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_48446.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_48446.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50614.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50614.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50615.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50615.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50618.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50618.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_51950.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11534_51950.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_31616.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_31616.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_38381.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_38381.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_45757.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_45757.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_46816.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_46816.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_50701.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_50701.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_54049.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_54049.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_57890.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_57890.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_61045.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11575_61045.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_30194.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_30194.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_31421.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_31421.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_35538.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_35538.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_55727.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_55727.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_60676.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_60676.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_61130.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_61130.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_6444.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_11631_6444.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_15623.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_15623.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_20096.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_20096.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_21591.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_21591.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30184.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30184.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30380.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30380.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30745.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30745.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30861.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_30861.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_31619.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_31619.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_34869.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_34869.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_35284.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_35284.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36915.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_36915.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37434.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37434.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37541.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37541.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37677.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_37677.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_38837.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_38837.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_39530.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_39530.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_43793.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_43793.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44164.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44164.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44579.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44579.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44593.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44593.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44692.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44692.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44914.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_44914.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_45878.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_45878.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48050.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48050.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48706.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48706.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48944.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48944.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48961.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_48961.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_49880.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_49880.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50055.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50055.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50512.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_50512.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_51064.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_51064.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_53537.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_53537.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_55749.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_55749.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_58879.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_58879.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_6876.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_121_6876.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_44664.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_44664.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_46451.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_46451.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_50640.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_50640.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_56102.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_56102.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_58015.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_58015.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59089.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59089.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59092.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59092.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_61340.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12209_61340.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_31458.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_31458.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_38481.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_38481.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_42104.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_42104.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49475.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49475.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49933.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49933.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_50558.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12252_50558.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_37249.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_37249.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_39117.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_39117.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48227.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48227.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48229.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_48229.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_53969.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_53969.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_54262.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_54262.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_55353.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_55353.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_61212.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_126_61212.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20250.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20250.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20506.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20506.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20626.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20626.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20689.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20689.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_21358.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_21358.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_34843.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_34843.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_35220.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_35220.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36318.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36318.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36800.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36800.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_39349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_39349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45385.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45385.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45676.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45676.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46700.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46700.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46719.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46719.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_48517.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_48517.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_52690.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_52690.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_53483.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_53483.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_55435.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_55435.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_56102.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_56102.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58015.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58015.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58375.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58375.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
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96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58700.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58700.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_16724.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_16724.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_2710.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_2710.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_30128.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_30128.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_31250.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_31250.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_35519.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_35519.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_36905.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_36905.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_46788.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_46788.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_4737.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_4737.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_55736.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_55736.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_57473.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_13001_57473.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_16146.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_16146.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30313.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30313.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30539.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30539.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30653.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30653.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30988.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_30988.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31179.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31179.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31339.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_31339.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_3525.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_3525.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_36886.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_36886.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_37020.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_37020.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_38128.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_38128.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_43952.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_43952.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45210.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45210.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45899.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_45899.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_47889.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_47889.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_51800.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_51800.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_53158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_53158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_5330.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_5330.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_55648.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_55648.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_56096.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_56096.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57287.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57287.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57399.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57399.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57606.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_57606.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_58470.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_58470.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_60894.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_130_60894.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_15010.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_15010.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20304.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20304.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20542.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20542.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20788.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_20788.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_21358.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_21358.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_30349.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_30349.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31103.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31103.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31764.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31764.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31822.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_31822.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_35220.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_35220.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_37964.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_37964.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_42164.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_42164.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_44072.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_44072.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_45522.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_45522.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46719.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46719.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46744.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_46744.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_48416.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_48416.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_49740.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_49740.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50034.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50034.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50640.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_50640.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53483.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53483.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53506.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53506.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53814.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_53814.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_55435.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_55435.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56074.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56074.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56107.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_56107.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57090.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57090.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57705.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57705.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57785.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57785.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57861.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_57861.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_58583.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_58583.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59089.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59089.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59092.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_15_59092.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_20600.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_20600.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_30764.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_30764.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_34876.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_34876.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_37427.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_37427.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_38266.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_38266.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_45283.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_45283.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_46990.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_46990.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47123.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47123.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47900.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_47900.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48050.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48050.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48062.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48062.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48076.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_48076.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50718.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50718.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50972.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_50972.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51372.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51372.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51830.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_51830.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53049.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53049.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53505.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_53505.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54021.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54021.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54565.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54565.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54570.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_54570.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57666.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57666.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57890.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_57890.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58072.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58072.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58634.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58634.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58643.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_58643.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59080.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59080.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59202.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59202.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59346.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_59346.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60379.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60379.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60385.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_60385.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_61098.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_165_61098.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_31154.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_31154.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_35648.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_35648.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_48914.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_48914.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_51975.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_51975.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_52435.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_52435.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_55790.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_55790.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_58958.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_58958.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_61146.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_17045_61146.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20191.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20191.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20562.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20562.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20606.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20606.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20607.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20607.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30003.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30003.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30402.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30402.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30726.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30726.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30924.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30924.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31457.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31457.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31460.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31460.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31600.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31600.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31620.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31620.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31640.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31640.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31782.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31782.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31797.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31797.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31829.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31829.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31856.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31856.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34690.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34690.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34691.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34691.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34694.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34694.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_35712.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_35712.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37497.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37497.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37539.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37539.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48070.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48070.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48219.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48219.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48824.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48824.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48902.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48902.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_52867.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_52867.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_53534.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_53534.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_54570.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_54570.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_58727.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_58727.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60159.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60159.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60661.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60661.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_30037.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_30037.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_34734.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_34734.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35365.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35365.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35787.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_35787.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_36793.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_36793.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_37845.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_37845.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_38328.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_38328.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_39374.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_39374.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_43936.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_43936.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44059.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44059.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44405.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44405.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44424.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_44424.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_45166.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_45166.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46158.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46158.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46425.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_46425.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_47187.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_47187.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48435.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48435.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48817.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48817.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48849.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48849.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48957.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48957.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48965.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_48965.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49519.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49519.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49921.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_49921.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50392.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50392.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50972.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_50972.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52405.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52405.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52442.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_52442.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_53169.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_53169.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_54640.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_54640.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_57207.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_57207.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58537.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58537.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58920.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_58920.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_60358.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_259_60358.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_16077.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_16077.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_34943.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_34943.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36391.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36391.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36574.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_36574.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_52906.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_52906.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_54642.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_25_54642.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_16385.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_16385.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20333.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20333.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20774.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_20774.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_35825.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_35825.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_37637.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_37637.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_47741.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_47741.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48567.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48567.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48841.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_48841.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_49589.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_49589.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_50564.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_50564.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_51201.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_51201.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_53150.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_53150.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_55747.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_55747.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_58276.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_43_58276.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_20813.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_20813.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2331.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2331.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2391.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_2391.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30374.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30374.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30512.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30512.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30796.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_30796.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31058.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31058.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31450.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_31450.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36609.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36609.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36636.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_36636.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_38266.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_38266.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_43800.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_43800.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_47621.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_47621.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49433.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49433.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49550.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49550.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49865.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_49865.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_51005.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_51005.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_52373.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_52373.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_53878.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_53878.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_54554.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_54554.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57508.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57508.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57618.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_57618.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_59484.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_59484.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_6563.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_51_6563.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_16845.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_16845.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37106.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37106.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37272.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_37272.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_47947.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_47947.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_50754.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_50754.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_55800.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_55800.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_57380.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_61_57380.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_35328.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_35328.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_36137.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_36137.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_38826.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_38826.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_44596.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_44596.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_51275.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_51275.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_55671.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_65_55671.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_20155.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_20155.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30616.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30616.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30653.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30653.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30988.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_30988.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31339.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31339.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31527.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31527.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31631.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_31631.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36047.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36047.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36568.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36568.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36636.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_36636.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_37020.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_37020.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_38128.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_38128.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_43952.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_43952.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_45210.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_45210.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_47889.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_47889.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51064.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51064.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51800.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_51800.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_5330.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_5330.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_57508.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_57508.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_58470.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_58470.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_60894.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_72_60894.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20730.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20730.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20753.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_20753.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30097.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30097.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30663.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_30663.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35365.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35365.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35375.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35375.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35918.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_35918.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36010.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36010.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36780.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36780.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36793.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_36793.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_37845.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_37845.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39110.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39110.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39546.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_39546.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_43936.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_43936.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44405.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44405.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44424.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44424.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44683.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_44683.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_45166.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_45166.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46648.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46648.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46986.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_46986.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47070.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47070.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47187.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_47187.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48435.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48435.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48817.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_48817.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49138.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49138.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49460.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49460.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49519.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49519.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49532.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49532.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49829.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_49829.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_50608.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_50608.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_54640.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_54640.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_61082.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_87_61082.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_15727.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_15727.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_20155.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_20155.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_30407.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_30407.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_3525.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_90_3525.txt
96: 
96: 
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: fopen testChEMBL_Txt(): No such file or directory
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_12377.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_12377.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_1308.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_1308.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_34759.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_34759.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_35447.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_35447.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_42214.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_42214.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_45877.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_45877.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_47082.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_47082.txt
96: 
96: 
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_57082.txt
96: testChEMBL_Txt() chembl_II_sets/Target_no_93_57082.txt
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13-10000-random-pairs.sdf
96: testFileSDF_RandomSet(): benchmark/chembl13-10000-random-pairs.sdf
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_pairs.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_pairs.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_2.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_2.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_10.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_10.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_100.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_knearest_100.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_80.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_80.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
96: 
96: 
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi
96: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi
96: ERROR: RDKit could not load input file
96: ERROR: RDKit could not load input file
 96/130 Test  #96: FMCStest ...........................   Passed    0.05 sec
 96/130 Test  #96: FMCStest ...........................   Passed    0.05 sec
test 97
test 97
        Start  97: testMolHash
        Start  97: testMolHash
97: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash
97: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/testMolHash
97: Test timeout computed to be: 9.99988e+06
97: Test timeout computed to be: 9.99988e+06
97: Hash size = 32 bits.
97: Hash size = 32 bits.
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test1 DEFAULT ARGUMENTS
97: [10:58:39] Testing MolHash test1 DEFAULT ARGUMENTS
97: Hash size = 32 bits.
97: Hash size = 32 bits.
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 3812942398 = PuJE4w
97: 
97: 
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 338198123 = a34oFA
97: 
97: 
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 402815520 = IHoCGA
97: 
97: 
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 1223038541 = TRbmSA
97: 
97: 
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 2928101980 = XEqHrg
97: 
97: 
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 2107878959 = L66jfQ
97: 
97: 
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 1627884062 = HooHYQ
97: 
97: 
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 4258023147 = 60bM/Q
97: 
97: 
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 2705547614 = XmFDoQ
97: 
97: 
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 140724322 = YkhjCA
97: 
97: 
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 3721159581 = nWPM3Q
97: 
97: 
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 3248152566 = 9t+awQ
97: 
97: 
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 1937191806 = fjN3cw
97: 
97: 
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 3096446839 = dweQuA
97: 
97: 
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 2679006896 = sGaunw
97: 
97: 
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 1803158519 = 9wN6aw
97: 
97: 
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test2 CHIRALITY == ATOM
97: [10:58:39] Testing MolHash test2 CHIRALITY == ATOM
97: Hash size = 32 bits.
97: Hash size = 32 bits.
97: 1803875862 = FvaEaw | C[C@H](F)Cl
97: 1803875862 = FvaEaw | C[C@H](F)Cl
97: 1803875862 = FvaEaw | C[C@@H](F)Cl
97: 1803875862 = FvaEaw | C[C@@H](F)Cl
97: 1803875862 = FvaEaw | CC(F)Cl
97: 1803875862 = FvaEaw | CC(F)Cl
97: 1803875862 = FvaEaw | [13CH3]C(F)Cl
97: 1803875862 = FvaEaw | [13CH3]C(F)Cl
97: 1803875862 = FvaEaw | C[C@H](Cl)F
97: 1803875862 = FvaEaw | C[C@H](Cl)F
97: 1803875862 = FvaEaw | C[C@@H](Cl)F
97: 1803875862 = FvaEaw | C[C@@H](Cl)F
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test21 CHIRALITY == BOND
97: [10:58:39] Testing MolHash test21 CHIRALITY == BOND
97: Hash size = 32 bits.
97: Hash size = 32 bits.
97: 2682339084 = DD/hnw | C/C=C/C
97: 2682339084 = DD/hnw | C/C=C/C
97: 2682339084 = DD/hnw | CC=CC
97: 2682339084 = DD/hnw | CC=CC
97: 2682339084 = DD/hnw | C/C=C\C
97: 2682339084 = DD/hnw | C/C=C\C
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test3 CHIRALITY DIFF
97: [10:58:39] Testing MolHash test3 CHIRALITY DIFF
97: 396390390 = 9m+gFw  C[C@H](F)Cl
97: 396390390 = 9m+gFw  C[C@H](F)Cl
97: 165703670 = 9m/gCQ  C[C@@H](F)Cl
97: 165703670 = 9m/gCQ  C[C@@H](F)Cl
97: 627077110 = 9m9gJQ  CC(F)Cl
97: 627077110 = 9m9gJQ  CC(F)Cl
97: 1767927798 = 9m9gaQ  [13CH3]C(F)Cl
97: 1767927798 = 9m9gaQ  [13CH3]C(F)Cl
97: 487785244 = HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 487785244 = HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 1886585628 = HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 1886585628 = HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 3383952156 = HAOzyQ  CC1CCC(C)CC1
97: 3383952156 = HAOzyQ  CC1CCC(C)CC1
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test3a CHIRALITY EQUAL
97: [10:58:39] Testing MolHash test3a CHIRALITY EQUAL
97: 396390390 396390390
97: 396390390 396390390
97: 165703670 165703670
97: 165703670 165703670
97: 1432360172 1432360172
97: 1432360172 1432360172
97: 1432360172 638829804
97: 1432360172 638829804
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test4 STRING
97: [10:58:39] Testing MolHash test4 STRING
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNTmug-IhGA6w-9m+gFw  C[C@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNTmug-IhGA6w-9m+gFw  C[C@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNSixQ-IhGA6w-9m/gCQ  C[C@@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNSixQ-IhGA6w-9m/gCQ  C[C@@H](F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqsA-IhGA6w-9m9gJQ  CC(F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqsA-IhGA6w-9m9gJQ  CC(F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqjw-IhGA6w-9m9gaQ  [13CH3]C(F)Cl
97: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqjw-IhGA6w-9m9gaQ  [13CH3]C(F)Cl
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP6lAg-xKA4jw-HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP6lAg-xKA4jw-HAMTHQ  C[C@H]1CC[C@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP49vg-xKA4jw-HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP49vg-xKA4jw-HANzcA  C[C@H]1CC[C@@H](C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP4NRw-xKA4jw-HAOzyQ  CC1CCC(C)CC1
97: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP4NRw-xKA4jw-HAOzyQ  CC1CCC(C)CC1
97: [10:58:39] 	done
97: [10:58:39] 	done
97: [10:58:39] *******************************************************
97: [10:58:39] *******************************************************
97: [10:58:39] -------------------------------------
97: [10:58:39] -------------------------------------
97: [10:58:39] Testing MolHash test5 
97: [10:58:39] Testing MolHash test5 
97: [10:58:39] 	done
97: [10:58:39] 	done
 97/130 Test  #97: testMolHash ........................   Passed    0.14 sec
 97/130 Test  #97: testMolHash ........................   Passed    0.14 sec
test 98
test 98
        Start  98: pyMolHash
        Start  98: pyMolHash
98: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/testMolHash.py"
98: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolHash/Wrap/testMolHash.py"
98: Test timeout computed to be: 9.99988e+06
98: Test timeout computed to be: 9.99988e+06
98: 
98: 
98: ----------------------------------------------------------------------
98: ----------------------------------------------------------------------
98: Ran 0 tests in 0.000s
98: Ran 0 tests in 0.000s
98: 
98: 
98: OK
98: OK
 98/130 Test  #98: pyMolHash ..........................   Passed    0.10 sec
 98/130 Test  #98: pyMolHash ..........................   Passed    0.10 sec
test 99
test 99
        Start  99: testMMPA
        Start  99: testMMPA
99: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/testMMPA
99: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/testMMPA
99: Test timeout computed to be: 9.99988e+06
99: Test timeout computed to be: 9.99988e+06
99: [10:58:39] *******************************************************
99: [10:58:39] *******************************************************
99: [10:58:39] MMPA Unit Test 
99: [10:58:39] MMPA Unit Test 
99: 
99: 
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: Time elapsed 0.003242 seconds
99: Time elapsed 0.003242 seconds
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: NOREF. Reference data NOT LISTED in test case.
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  -----------------------------------
99:  -----------------------------------
99: [10:58:39] -------------------------------------
99: [10:58:39] -------------------------------------
99: [10:58:39] MMPA test2()
99: [10:58:39] MMPA test2()
99: 
99: 
99: Time elapsed 0.002657 seconds
99: Time elapsed 0.002657 seconds
99: 
99: 
99: TEST 1 mol: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99: TEST 1 mol: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99:    1: NULL, C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:    1: NULL, C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:  1: PASSED. matchedRefRes = 4
99:  1: PASSED. matchedRefRes = 4
99:    2: O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21, C[*:1].O=C(NCCO)[*:2]
99:    2: O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21, C[*:1].O=C(NCCO)[*:2]
99:  2: PASSED. matchedRefRes = 1
99:  2: PASSED. matchedRefRes = 1
99:    3: O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OCC[*:2]
99:    3: O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OCC[*:2]
99:  3: PASSED. matchedRefRes = 6
99:  3: PASSED. matchedRefRes = 6
99:    4: O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OC[*:2]
99:    4: O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].OC[*:2]
99:  4: PASSED. matchedRefRes = 13
99:  4: PASSED. matchedRefRes = 13
99:    5: O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].O[*:2]
99:    5: O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O, C[*:1].O[*:2]
99:  5: PASSED. matchedRefRes = 12
99:  5: PASSED. matchedRefRes = 12
99:    6: NULL, Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:    6: NULL, Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:  6: PASSED. matchedRefRes = 10
99:  6: PASSED. matchedRefRes = 10
99:    7: O=C(N[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:    7: O=C(N[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:    8: O=C(NC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    8: O=C(NC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: NOREF. Reference data NOT LISTED in test case.O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: NOREF. Reference data NOT LISTED in test case.O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    9: O=C(NCC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:    9: O=C(NCC[*:1])[*:2], Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: NOREF. Reference data NOT LISTED in test case.O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: NOREF. Reference data NOT LISTED in test case.O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:    10: NULL, Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:    10: NULL, Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99: 10: PASSED. matchedRefRes = 3
99: 10: PASSED. matchedRefRes = 3
99:    11: C([*:1])[*:2], Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    11: C([*:1])[*:2], Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: NOREF. Reference data NOT LISTED in test case.C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: NOREF. Reference data NOT LISTED in test case.C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    12: C(C[*:2])[*:1], Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99:    12: C(C[*:2])[*:1], Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 12: PASSED. matchedRefRes = 8
99: 12: PASSED. matchedRefRes = 8
99:    13: NULL, Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:    13: NULL, Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 13: PASSED. matchedRefRes = 9
99: 13: PASSED. matchedRefRes = 9
99:    14: C([*:1])[*:2], Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99:    14: C([*:1])[*:2], Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: PASSED. matchedRefRes = 11
99: 14: PASSED. matchedRefRes = 11
99:    15: NULL, Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:    15: NULL, Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99: 15: PASSED. matchedRefRes = 2
99: 15: PASSED. matchedRefRes = 2
99: 
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  -----------------------------------
99:  -----------------------------------
99: [10:58:39] 	Done
99: [10:58:39] 	Done
99: [10:58:39] -------------------------------------
99: [10:58:39] -------------------------------------
99: [10:58:39] MMPA test3()
99: [10:58:39] MMPA test3()
99: 
99: 
99: 
99: 
99: TEST mol: ZINC21984717 Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99: TEST mol: ZINC21984717 Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-] ZINC21984717
99: Time elapsed 0.002715 seconds
99: Time elapsed 0.002715 seconds
99:  1: res= NULL,C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:  1: res= NULL,C[*:1].O=C(NCCO)c1c([*:1])n([O-])c2ccccc2[n+]1=O
99:  1: PASSED. matchedRefRes = 4
99:  1: PASSED. matchedRefRes = 4
99:  2: res= O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21,C[*:1].O=C(NCCO)[*:2]
99:  2: res= O=[n+]1c([*:2])c([*:1])n([O-])c2ccccc21,C[*:1].O=C(NCCO)[*:2]
99:  2: PASSED. matchedRefRes = 1
99:  2: PASSED. matchedRefRes = 1
99:  3: res= O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OCC[*:2]
99:  3: res= O=C(N[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OCC[*:2]
99:  3: PASSED. matchedRefRes = 6
99:  3: PASSED. matchedRefRes = 6
99:  4: res= O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OC[*:2]
99:  4: res= O=C(NC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].OC[*:2]
99:  4: PASSED. matchedRefRes = 13
99:  4: PASSED. matchedRefRes = 13
99:  5: res= O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].O[*:2]
99:  5: res= O=C(NCC[*:2])c1c([*:1])n([O-])c2ccccc2[n+]1=O,C[*:1].O[*:2]
99:  5: PASSED. matchedRefRes = 12
99:  5: PASSED. matchedRefRes = 12
99:  6: res= NULL,Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:  6: res= NULL,Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O=C(NCCO)[*:1]
99:  6: PASSED. matchedRefRes = 10
99:  6: PASSED. matchedRefRes = 10
99:  7: res= O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: res= O=C(N[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: res= O=C(NC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: res= O=C(NCC[*:1])[*:2],Cc1c([*:2])[n+](=O)c2ccccc2n1[O-].O[*:1]
99:  9: NOREF. Reference data NOT LISTED in test case.
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= NULL,Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99: 10: res= NULL,Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:1]
99: 10: PASSED. matchedRefRes = 3
99: 10: PASSED. matchedRefRes = 3
99: 11: res= C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: res= C([*:1])[*:2],Cc1c(C(=O)N[*:2])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= C(C[*:2])[*:1],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 12: res= C(C[*:2])[*:1],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 12: PASSED. matchedRefRes = 8
99: 12: PASSED. matchedRefRes = 8
99: 13: res= NULL,Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 13: res= NULL,Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:1]
99: 13: PASSED. matchedRefRes = 9
99: 13: PASSED. matchedRefRes = 9
99: 14: res= C([*:1])[*:2],Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: res= C([*:1])[*:2],Cc1c(C(=O)NC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: PASSED. matchedRefRes = 11
99: 14: PASSED. matchedRefRes = 11
99: 15: res= NULL,Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99: 15: res= NULL,Cc1c(C(=O)NCC[*:1])[n+](=O)c2ccccc2n1[O-].O[*:1]
99: 15: PASSED. matchedRefRes = 2
99: 15: PASSED. matchedRefRes = 2
99: 
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  5: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,C([*:1])[*:2],Cc1c(C(=O)N[*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99:  7: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(N[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OCC[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 14: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NCC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].O[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99: 15: Cc1c(C(=O)NCCO)[n+](=O)c2ccccc2n1[O-],ZINC21984717,O=C(NC[*:2])[*:1],Cc1c([*:1])[n+](=O)c2ccccc2n1[O-].OC[*:2]
99:  -----------------------------------
99:  -----------------------------------
99: 
99: 
99: TEST mol: Case1-SIMPLE CC(N1CC1)C(=O) Case1-SIMPLE
99: TEST mol: Case1-SIMPLE CC(N1CC1)C(=O) Case1-SIMPLE
99: Time elapsed 0.000711 seconds
99: Time elapsed 0.000711 seconds
99:  1: res= NULL,C[*:1].O=CC(N1CC1)[*:1]
99:  1: res= NULL,C[*:1].O=CC(N1CC1)[*:1]
99:  1: PASSED. matchedRefRes = 2
99:  1: PASSED. matchedRefRes = 2
99:  2: res= O=CC([*:1])[*:2],C1CN1[*:2].C[*:1]
99:  2: res= O=CC([*:1])[*:2],C1CN1[*:2].C[*:1]
99:  2: PASSED. matchedRefRes = 3
99:  2: PASSED. matchedRefRes = 3
99:  3: res= C([*:1])([*:2])[*:3],C1CN1[*:3].C[*:1].O=C[*:2]
99:  3: res= C([*:1])([*:2])[*:3],C1CN1[*:3].C[*:1].O=C[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= C1CN1C([*:1])[*:2],C[*:1].O=C[*:2]
99:  4: res= C1CN1C([*:1])[*:2],C[*:1].O=C[*:2]
99:  4: PASSED. matchedRefRes = 4
99:  4: PASSED. matchedRefRes = 4
99:  5: res= NULL,C1CN1[*:1].CC(C=O)[*:1]
99:  5: res= NULL,C1CN1[*:1].CC(C=O)[*:1]
99:  5: PASSED. matchedRefRes = 5
99:  5: PASSED. matchedRefRes = 5
99:  6: res= CC([*:1])[*:2],C1CN1[*:2].O=C[*:1]
99:  6: res= CC([*:1])[*:2],C1CN1[*:2].O=C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,CC(N1CC1)[*:1].O=C[*:1]
99:  7: res= NULL,CC(N1CC1)[*:1].O=C[*:1]
99:  7: PASSED. matchedRefRes = 7
99:  7: PASSED. matchedRefRes = 7
99: 
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: CC(N1CC1)C(=O),Case1-SIMPLE,C([*:1])([*:2])[*:3],C1CN1[*:2].C[*:1].O=C[*:3]
99:  1: CC(N1CC1)C(=O),Case1-SIMPLE,C([*:1])([*:2])[*:3],C1CN1[*:2].C[*:1].O=C[*:3]
99:  6: CC(N1CC1)C(=O),Case1-SIMPLE,CC([*:1])[*:2],C1CN1[*:1].O=C[*:2]
99:  6: CC(N1CC1)C(=O),Case1-SIMPLE,CC([*:1])[*:2],C1CN1[*:1].O=C[*:2]
99:  -----------------------------------
99:  -----------------------------------
99: 
99: 
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: TEST mol: Case1 Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1 Case1
99: Time elapsed 0.002946 seconds
99: Time elapsed 0.002946 seconds
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: res= NULL,C[*:1].C[C:2](C(=O)Nc1ccccc1[*:1])[NH+]1CCCC1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: res= c1ccc([*:2])c([*:1])c1,C[*:1].C[C:3](C(=O)N[*:2])[NH+]1CCCC1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: res= O=C(Nc1ccccc1[*:1])[*:2],C[*:1].C[C:3]([NH+]1CCCC1)[*:2]
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: res= O=C(Nc1ccccc1[*:1])[C:0]([NH+]1CCCC1)[*:2],C[*:1].C[*:2]
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: res= O=C(Nc1ccccc1[*:1])[C:0]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].C[*:2]
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: res= C[C:0](C(=O)Nc1ccccc1[*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: res= NULL,C[C:2](C(=O)N[*:1])[NH+]1CCCC1.Cc1ccccc1[*:1]
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: res= O=C(N[*:3])[*:1],C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1[*:3]
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: res= O=C(N[*:2])[C:0]([NH+]1CCCC1)[*:1],C[*:1].Cc1ccccc1[*:2]
99:  9: NOREF. Reference data NOT LISTED in test case.
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: res= O=C(N[*:3])[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1].Cc1ccccc1[*:3]
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: res= C[C:0](C(=O)N[*:2])[*:1],C1CC[NH+]([*:1])C1.Cc1ccccc1[*:2]
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: res= NULL,C[C:2]([NH+]1CCCC1)[*:1].Cc1ccccc1NC(=O)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: res= C1CC[NH+]([C:0]([*:1])[*:2])C1,C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: res= [C:0]([*:1])([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:1].Cc1ccccc1NC(=O)[*:2]
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 14: NOREF. Reference data NOT LISTED in test case.
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: res= C[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.Cc1ccccc1NC(=O)[*:1]
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: res= NULL,C[*:1].Cc1ccccc1NC(=O)[C:2]([NH+]1CCCC1)[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: res= Cc1ccccc1NC(=O)[C:0]([*:1])[*:2],C1CC[NH+]([*:2])C1.C[*:1]
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: res= NULL,C1CC[NH+]([*:1])C1.Cc1ccccc1NC(=O)[C:2](C)[*:1]
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99: 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  --- UNMATCHED Reference RESULTS: --- 
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  1: Cc1ccccc1NC(=O)[C:7](C)[NH+]1CCCC1,Case1,[*:1][C:7]([*:2])[*:3],C1CC[NH+]([*:3])C1.C[*:2].Cc1ccccc1NC(=O)[*:1]
99:  -----------------------------------
99:  -----------------------------------
99: 
99: 
99: TEST mol: Case2 O=C(OCc1ccccc1)C(O)c1ccccc1 Case2
99: TEST mol: Case2 O=C(OCc1ccccc1)C(O)c1ccccc1 Case2
99: Time elapsed 0.006110 seconds
99: Time elapsed 0.006110 seconds
99:  1: res= NULL,O=C(O[*:1])C(O)c1ccccc1.c1ccc(C[*:1])cc1
99:  1: res= NULL,O=C(O[*:1])C(O)c1ccccc1.c1ccc(C[*:1])cc1
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  1: NOREF. Reference data NOT LISTED in test case.
99:  2: res= C([*:1])[*:2],O=C(O[*:1])C(O)c1ccccc1.c1ccc([*:2])cc1
99:  2: res= C([*:1])[*:2],O=C(O[*:1])C(O)c1ccccc1.c1ccc([*:2])cc1
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  2: NOREF. Reference data NOT LISTED in test case.
99:  3: res= O=C(O[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc(C[*:2])cc1
99:  3: res= O=C(O[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc(C[*:2])cc1
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  3: NOREF. Reference data NOT LISTED in test case.
99:  4: res= O=C(O[*:1])C(c1ccccc1)[*:2],O[*:2].c1ccc(C[*:1])cc1
99:  4: res= O=C(O[*:1])C(c1ccccc1)[*:2],O[*:2].c1ccc(C[*:1])cc1
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  4: NOREF. Reference data NOT LISTED in test case.
99:  5: res= O=C(O[*:1])C([*:2])[*:3],O[*:2].c1ccc(C[*:1])cc1.c1ccc([*:3])cc1
99:  5: res= O=C(O[*:1])C([*:2])[*:3],O[*:2].c1ccc(C[*:1])cc1.c1ccc([*:3])cc1
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  5: NOREF. Reference data NOT LISTED in test case.
99:  6: res= O=C(O[*:1])C(O)[*:2],c1ccc(C[*:1])cc1.c1ccc([*:2])cc1
99:  6: res= O=C(O[*:1])C(O)[*:2],c1ccc(C[*:1])cc1.c1ccc([*:2])cc1
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  6: NOREF. Reference data NOT LISTED in test case.
99:  7: res= NULL,O=C(OC[*:1])C(O)c1ccccc1.c1ccc([*:1])cc1
99:  7: res= NULL,O=C(OC[*:1])C(O)c1ccccc1.c1ccc([*:1])cc1
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  7: NOREF. Reference data NOT LISTED in test case.
99:  8: res= O=C(OC[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc([*:2])cc1
99:  8: res= O=C(OC[*:2])[*:1],OC(c1ccccc1)[*:1].c1ccc([*:2])cc1
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  8: NOREF. Reference data NOT LISTED in test case.
99:  9: res= O=C(OC[*:2])C(c1ccccc1)[*:1],O[*:1].c1ccc([*:2])cc1
99:  9: res= O=C(OC[*:2])C(c1ccccc1)[*:1],O[*:1].c1ccc([*:2])cc1
99:  9: NOREF. Reference data NOT LISTED in test case.
99:  9: NOREF. Reference data NOT LISTED in test case.
99: 10: res= O=C(OC[*:2])C([*:1])[*:3],O[*:1].c1ccc([*:2])cc1.c1ccc([*:3])cc1
99: 10: res= O=C(OC[*:2])C([*:1])[*:3],O[*:1].c1ccc([*:2])cc1.c1ccc([*:3])cc1
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 10: NOREF. Reference data NOT LISTED in test case.
99: 11: res= O=C(OC[*:1])C(O)[*:2],c1ccc([*:1])cc1.c1ccc([*:2])cc1
99: 11: res= O=C(OC[*:1])C(O)[*:2],c1ccc([*:1])cc1.c1ccc([*:2])cc1
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 11: NOREF. Reference data NOT LISTED in test case.
99: 12: res= NULL,O=C(OCc1ccccc1)[*:1].OC(c1ccccc1)[*:1]
99: 12: res= NULL,O=C(OCc1ccccc1)[*:1].OC(c1ccccc1)[*:1]
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 12: NOREF. Reference data NOT LISTED in test case.
99: 13: res= c1ccc(C([*:1])[*:2])cc1,O=C(OCc1ccccc1)[*:1].O[*:2]
99: 13: res= c1ccc(C([*:1])[*:2])cc1,O=C(OCc1ccccc1)[*:1].O[*:2]
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 13: NOREF. Reference data NOT LISTED in test case.
99: 14: res= C([*:1])([*:2])[*:3],O=C(OCc1ccccc1)[*:1].O[*:2].c1ccc([*:3])cc1
99: 14: res= C([*:1])([*:2])[*:3],O=C(OCc1ccccc1)[*:1].O[*:2].c1ccc([*:3])cc1
99: 14: PASSED. matchedRefRes = 1
99: 14: PASSED. matchedRefRes = 1
99: 15: res= OC([*:1])[*:2],O=C(OCc1ccccc1)[*:1].c1ccc([*:2])cc1
99: 15: res= OC([*:1])[*:2],O=C(OCc1ccccc1)[*:1].c1ccc([*:2])cc1
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 15: NOREF. Reference data NOT LISTED in test case.
99: 16: res= NULL,O=C(OCc1ccccc1)C(c1ccccc1)[*:1].O[*:1]
99: 16: res= NULL,O=C(OCc1ccccc1)C(c1ccccc1)[*:1].O[*:1]
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 16: NOREF. Reference data NOT LISTED in test case.
99: 17: res= O=C(OCc1ccccc1)C([*:1])[*:2],O[*:1].c1ccc([*:2])cc1
99: 17: res= O=C(OCc1ccccc1)C([*:1])[*:2],O[*:1].c1ccc([*:2])cc1
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 17: NOREF. Reference data NOT LISTED in test case.
99: 18: res= NULL,O=C(OCc1ccccc1)C(O)[*:1].c1ccc([*:1])cc1
99: 18: res= NULL,O=C(OCc1ccccc1)C(O)[*:1].c1ccc([*:1])cc1
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 18: NOREF. Reference data NOT LISTED in test case.
99: 
99: 
99:  --- ALL PASSED --- 
99:  --- ALL PASSED --- 
99:  -----------------------------------
99:  -----------------------------------
99: [10:58:40] 	Done
99: [10:58:40] 	Done
99: [10:58:40] *******************************************************
99: [10:58:40] *******************************************************
99: 5 TEST CASES FAILED 
99: 5 TEST CASES FAILED 
99: [10:58:40] *******************************************************
99: [10:58:40] *******************************************************
 99/130 Test  #99: testMMPA ...........................   Passed    0.10 sec
 99/130 Test  #99: testMMPA ...........................   Passed    0.10 sec
test 100
test 100
        Start 100: pyMMPA
        Start 100: pyMMPA
100: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/testMMPA.py"
100: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MMPA/Wrap/testMMPA.py"
100: Test timeout computed to be: 9.99988e+06
100: Test timeout computed to be: 9.99988e+06
100: .........
100: .........
100: ----------------------------------------------------------------------
100: ----------------------------------------------------------------------
100: Ran 9 tests in 1.356s
100: Ran 9 tests in 1.356s
100: 
100: 
100: OK
100: OK
100/130 Test #100: pyMMPA .............................   Passed    1.47 sec
100/130 Test #100: pyMMPA .............................   Passed    1.47 sec
test 101
test 101
        Start 101: testStructChecker
        Start 101: testStructChecker
101: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker
101: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/testStructChecker
101: Test timeout computed to be: 9.99988e+06
101: Test timeout computed to be: 9.99988e+06
101: [10:58:41] *******************************************************
101: [10:58:41] *******************************************************
101: [10:58:41] StructChecker Unit Test 
101: [10:58:41] StructChecker Unit Test 
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testFlags
101: [10:58:41] testFlags
101: [10:58:41] STEREO_ERROR
101: [10:58:41] STEREO_ERROR
101: [10:58:41] STEREO_ERROR,TRANSFORMED
101: [10:58:41] STEREO_ERROR,TRANSFORMED
101: [10:58:41] 65407 = BAD_MOLECULE,ALIAS_CONVERSION_FAILED,STEREO_ERROR,STEREO_FORCED_BAD,ATOM_CLASH,ATOM_CHECK_FAILED,SIZE_CHECK_FAILED,,TRANSFORMED,FRAGMENTS_FOUND,EITHER_WARNING,DUBIOUS_STEREO_REMOVED,RECHARGED,STEREO_TRANSFORMED,TEMPLATE_TRANSFORMED,TAUTOMER_TRANSFORMED
101: [10:58:41] 65407 = BAD_MOLECULE,ALIAS_CONVERSION_FAILED,STEREO_ERROR,STEREO_FORCED_BAD,ATOM_CLASH,ATOM_CHECK_FAILED,SIZE_CHECK_FAILED,,TRANSFORMED,FRAGMENTS_FOUND,EITHER_WARNING,DUBIOUS_STEREO_REMOVED,RECHARGED,STEREO_TRANSFORMED,TEMPLATE_TRANSFORMED,TAUTOMER_TRANSFORMED
101: [10:58:41]  STEREO_ERROR ,	 TRANSFORMED [xXx} = STEREO_ERROR,TRANSFORMED
101: [10:58:41]  STEREO_ERROR ,	 TRANSFORMED [xXx} = STEREO_ERROR,TRANSFORMED
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsDefault
101: [10:58:41] testOptionsDefault
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] RES : 
101: [10:58:41] RES : 
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] RES : 
101: [10:58:41] RES : 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsJSON
101: [10:58:41] testOptionsJSON
101: [10:58:41] str='{}'
101: [10:58:41] str='{}'
101: [10:58:41] str='{...error..}'
101: [10:58:41] str='{...error..}'
101: [10:58:41] JSON StructureCheck Options:expected object name
101: [10:58:41] JSON StructureCheck Options:expected object name
101: [10:58:41] str='{"Verbose": true, "CheckStereo": true}'
101: [10:58:41] str='{"Verbose": true, "CheckStereo": true}'
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testLoadOptionsFromFiles FROM CURRENT (.../test) DIRECTORY
101: [10:58:41] testLoadOptionsFromFiles FROM CURRENT (.../test) DIRECTORY
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testOptionsDefault
101: [10:58:41] testOptionsDefault
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] RES : 
101: [10:58:41] RES : 
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] 1 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] RES : 
101: [10:58:41] RES : 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] test1
101: [10:58:41] test1
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] test2
101: [10:58:41] test2
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom
101: [10:58:41] testCheckAtom
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom2
101: [10:58:41] testCheckAtom2
101: [10:58:41] substance Substance_310925001_310950000-003900.sdf
101: [10:58:41] substance Substance_310925001_310950000-003900.sdf
101: [10:58:41] Cc1nscc1[N+](=O)[O-]
101: [10:58:41] Cc1nscc1[N+](=O)[O-]
101: [10:58:41] Cc1[nH+]scc1[N+](=O)[O-]
101: [10:58:41] Cc1[nH+]scc1[N+](=O)[O-]
101: [10:58:41] RES: ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] RES: ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] substance Substance_310925001_310950000-012197.sdf
101: [10:58:41] substance Substance_310925001_310950000-012197.sdf
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] [N-]=[N+]=NCC(F)(F)F
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] substance Substance_310925001_310950000-021440.sdf
101: [10:58:41] substance Substance_310925001_310950000-021440.sdf
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] O=COCO[N+](=O)[O-]
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] substance Substance_310925001_310950000-021442.sdf
101: [10:58:41] substance Substance_310925001_310950000-021442.sdf
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] CCOCO[N+](=O)[O-]
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testCheckAtom
101: [10:58:41] testCheckAtom
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 0 : COC(=O)C
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testStereo
101: [10:58:41] testStereo
101: [10:58:41] 0 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] 0 : COC(=O)C(\C)=C\C1C(C)(C)[C@H]1C(=O)O[C@@H]2C(C)=C(C(=O)C2)CC=CC=C
101: [10:58:41] FLAGS:
101: [10:58:41] FLAGS:
101: [10:58:41] 1 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] 1 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] FLAGS:
101: [10:58:41] FLAGS:
101: [10:58:41] 2 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)1
101: [10:58:41] 2 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)1
101: [10:58:41] FLAGS:
101: [10:58:41] FLAGS:
101: [10:58:41] 3 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] 3 : OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H]2[C@@H]1c3c(O)c(OC)c(O)cc3C(=O)O2
101: [10:58:41] FLAGS:
101: [10:58:41] FLAGS:
101: [10:58:41] substance_310975001:
101: [10:58:41] substance_310975001:
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: chiral flag, no stereocenter
101: chiral flag, no stereocenter
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] FLAGS: 
101: [10:58:41] FLAGS: 
101: [10:58:41] substance 0
101: [10:58:41] substance 0
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] [#7]1(-[#6]-[#6](-[#6]-[#6]-1)-[#6]-[#6]-[#6])-[#6]-[#6]
101: [10:58:41] ref: STEREO_ERROR
101: [10:58:41] ref: STEREO_ERROR
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] -------
101: [10:58:41] substance 1
101: [10:58:41] substance 1
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] [#9]-[#6](-[#35])(-[#17])-[#6]
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] -------
101: [10:58:41] substance 2
101: [10:58:41] substance 2
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] ref: 
101: [10:58:41] ref: 
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] -------
101: [10:58:41] substance 3
101: [10:58:41] substance 3
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] [#6](-[#6])=[#6]-[#6]
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] ref: EITHER_WARNING,DUBIOUS_STEREO_REMOVED
101: [10:58:41] RES: 
101: [10:58:41] RES: 
101: [10:58:41] -------
101: [10:58:41] -------
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] checking nitro groups
101: [10:58:41] checking nitro groups
101: flags 0
101: flags 0
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testSpecificOrder
101: [10:58:41] testSpecificOrder
101: [10:58:41] 0 : FC(F)O
101: [10:58:41] 0 : FC(F)O
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] 1 : OC(F)F
101: [10:58:41] 1 : OC(F)F
101: [10:58:41] 
101: [10:58:41] 
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testTransformAtoms
101: [10:58:41] testTransformAtoms
101: [10:58:41] 0 : FC=C(F)O
101: [10:58:41] 0 : FC=C(F)O
101: [10:58:41] OC(F)CF
101: [10:58:41] OC(F)CF
101: [10:58:41] TAUTOMER_TRANSFORMED
101: [10:58:41] TAUTOMER_TRANSFORMED
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testTransformAtoms
101: [10:58:41] testTransformAtoms
101: [10:58:41] 0 : C(=O)C
101: [10:58:41] 0 : C(=O)C
101: [10:58:41] before: CC=O
101: [10:58:41] before: CC=O
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] CCO
101: [10:58:41] CCO
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] after:  CCO
101: [10:58:41] after:  CCO
101: [10:58:41] TRANSFORMED
101: [10:58:41] TRANSFORMED
101: [10:58:41] 1 : FC=CO
101: [10:58:41] 1 : FC=CO
101: [10:58:41] before: OC=CF
101: [10:58:41] before: OC=CF
101: [10:58:41] Replace atom '' idx=1 AA: C(=C)(-F) with AAPair i=148 C -> C
101: [10:58:41] Replace atom '' idx=1 AA: C(=C)(-F) with AAPair i=148 C -> C
101: [10:58:41] OCC=F
101: [10:58:41] OCC=F
101: [10:58:41] * CheckAtom idx=0, F neighbours=1, C
101: [10:58:41] * CheckAtom idx=0, F neighbours=1, C
101: [10:58:41] UNMATCHED atom idx=0 F status=0 nmatch=0
101: [10:58:41] UNMATCHED atom idx=0 F status=0 nmatch=0
101: atom '' idx=0 AA: F(=C)
101: atom '' idx=0 AA: F(=C)
101: [10:58:41] atom '' idx=0 AA: F(=C)
101: [10:58:41] atom '' idx=0 AA: F(=C)
101: [10:58:41] * CheckAtom idx=1, C neighbours=2, F, C
101: [10:58:41] * CheckAtom idx=1, C neighbours=2, F, C
101: [10:58:41] UNMATCHED ring state RING of atom idx=1 C status=0
101: [10:58:41] UNMATCHED ring state RING of atom idx=1 C status=0
101: [10:58:41] UNMATCHED atom idx=1 C status=0 nmatch=0
101: [10:58:41] UNMATCHED atom idx=1 C status=0 nmatch=0
101: atom '' idx=1 AA: C(-C)(=F)
101: atom '' idx=1 AA: C(-C)(=F)
101: [10:58:41] atom '' idx=1 AA: C(-C)(=F)
101: [10:58:41] atom '' idx=1 AA: C(-C)(=F)
101: [10:58:41] * CheckAtom idx=2, C neighbours=2, C, O
101: [10:58:41] * CheckAtom idx=2, C neighbours=2, C, O
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=2 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=2 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=3 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=3 aa_idx=28 ret TRUE !
101: [10:58:41] after:  OCC=F
101: [10:58:41] after:  OCC=F
101: [10:58:41] ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] ATOM_CHECK_FAILED,TRANSFORMED
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testAugmentedAtomTranslationsToAtomListQuery
101: [10:58:41] testAugmentedAtomTranslationsToAtomListQuery
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] Replace atom '' idx=0 AA: C(-C)(=O) with AAPair i=147 C -> C
101: [10:58:41] CCO
101: [10:58:41] CCO
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] * CheckAtom idx=0, C neighbours=2, O, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=0 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] * CheckAtom idx=1, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] * CheckAtom idx=2, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] AAMatch idx=2 aa_idx=12 ret TRUE !
101: [10:58:41] FLAGs: TRANSFORMED
101: [10:58:41] FLAGs: TRANSFORMED
101: [10:58:41] RES  : [#6](-[#8,#7,#16,#20])-[#6]
101: [10:58:41] RES  : [#6](-[#8,#7,#16,#20])-[#6]
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] -------------------------------------
101: [10:58:41] -------------------------------------
101: [10:58:41] testCarboxylicAcids. Substance_310925001_310950000-000075-000075
101: [10:58:41] testCarboxylicAcids. Substance_310925001_310950000-000075-000075
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] Replace atom '310925076' idx=21 AA: C(-C)(-O-1)(=O) with AAPair i=88 C -> C
101: [10:58:41] Replace atom '310925076' idx=21 AA: C(-C)(-O-1)(=O) with AAPair i=88 C -> C
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl.[Na+]
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl.[Na+]
101: [10:58:41] 310925076 removed fragment i=1 with 1 atoms
101: [10:58:41] 310925076 removed fragment i=1 with 1 atoms
101: [10:58:41] 310925076 removed fragment i=2 with 17 atoms
101: [10:58:41] 310925076 removed fragment i=2 with 17 atoms
101: [10:58:41] Striped SmallFragmentsCc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] Striped SmallFragmentsCc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] tautomerizing with rule 0
101: [10:58:41] tautomerizing with rule 0
101: [10:58:41] * CheckAtom idx=0, Cl neighbours=1, C
101: [10:58:41] * CheckAtom idx=0, Cl neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=0 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=0 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=1, Cl neighbours=1, C
101: [10:58:41] * CheckAtom idx=1, Cl neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=1 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=2, O neighbours=1, C
101: [10:58:41] * CheckAtom idx=2, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] RecMatch ret TRUE N,O,S,F,Cl,Br,I(-C,Si,Ge,Sn,Pb,T,D,H,N,P,As,Sb,Bi,O,S,Se,Te,Po)
101: [10:58:41] AAMatch idx=2 aa_idx=28 ret TRUE !
101: [10:58:41] AAMatch idx=2 aa_idx=28 ret TRUE !
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] * CheckAtom idx=3, O neighbours=1, C
101: [10:58:41] RecMatch ret TRUE N,O(=B,C,Si,Sn,Ge,N,P,As,Sb,S,Se,Cl,Br,I)
101: [10:58:41] RecMatch ret TRUE N,O(=B,C,Si,Sn,Ge,N,P,As,Sb,S,Se,Cl,Br,I)
101: [10:58:41] AAMatch idx=3 aa_idx=33 ret TRUE !
101: [10:58:41] AAMatch idx=3 aa_idx=33 ret TRUE !
101: [10:58:41] * CheckAtom idx=4, N neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=4, N neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE N(-C,Si,N,P,O,S)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,F,Cl,Br,I,H,D,T)
101: [10:58:41] RecMatch ret TRUE N(-C,Si,N,P,O,S)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,F,Cl,Br,I,H,D,T)
101: [10:58:41] AAMatch idx=4 aa_idx=140 ret TRUE !
101: [10:58:41] AAMatch idx=4 aa_idx=140 ret TRUE !
101: [10:58:41] * CheckAtom idx=5, C neighbours=3, N, C, C
101: [10:58:41] * CheckAtom idx=5, C neighbours=3, N, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=5 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=5 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=6, C neighbours=3, Cl, C, C
101: [10:58:41] * CheckAtom idx=6, C neighbours=3, Cl, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=6 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=6 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=7, C neighbours=3, N, C, C
101: [10:58:41] * CheckAtom idx=7, C neighbours=3, N, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=7 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=7 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=8, C neighbours=3, Cl, C, C
101: [10:58:41] * CheckAtom idx=8, C neighbours=3, Cl, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=8 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=8 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=9, C neighbours=3, C, C, C
101: [10:58:41] * CheckAtom idx=9, C neighbours=3, C, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=9 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=9 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=10, C neighbours=3, C, C, C
101: [10:58:41] * CheckAtom idx=10, C neighbours=3, C, C, C
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,F,Cl,Br,I)(-C,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=10 aa_idx=301 ret TRUE !
101: [10:58:41] AAMatch idx=10 aa_idx=301 ret TRUE !
101: [10:58:41] * CheckAtom idx=11, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=11, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=11 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=11 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=12, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=12, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=12 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=12 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=13, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=13, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=13 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=13 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=14, C neighbours=3, O, O, C
101: [10:58:41] * CheckAtom idx=14, C neighbours=3, O, O, C
101: [10:58:41] RecMatch ret TRUE C(=O,S,Se)(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,Se,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(=O,S,Se)(-C,N,P,O,S,Se,F,Cl,Br,I)(-C,N,P,O,S,Se,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=14 aa_idx=322 ret TRUE !
101: [10:58:41] AAMatch idx=14 aa_idx=322 ret TRUE !
101: [10:58:41] * CheckAtom idx=15, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=15, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=15 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=15 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=16, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=16, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=16 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=16 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=17, C neighbours=2, C, C
101: [10:58:41] * CheckAtom idx=17, C neighbours=2, C, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si)(-B,C,Si,Ge,Sn,Pb,N,P,O,S,Se,Te,F,Cl,Br,I,D,T)
101: [10:58:41] AAMatch idx=17 aa_idx=107 ret TRUE !
101: [10:58:41] AAMatch idx=17 aa_idx=107 ret TRUE !
101: [10:58:41] * CheckAtom idx=18, C neighbours=1, C
101: [10:58:41] * CheckAtom idx=18, C neighbours=1, C
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] RecMatch ret TRUE C(-B,C,Si,Ge,Sn,Pb,N,P,As,O,S,Se,Te,F,Cl,Br,I)
101: [10:58:41] AAMatch idx=18 aa_idx=12 ret TRUE !
101: [10:58:41] AAMatch idx=18 aa_idx=12 ret TRUE !
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] C=CC(C1=CC(=O)C=CC1=O)c1ccccc1.Cc1ccc(Cl)c(Nc2ccccc2C(=O)[O-])c1Cl.[Na+]
101: [10:58:41] Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] Cc1ccc(Cl)c(Nc2ccccc2C(=O)O)c1Cl
101: [10:58:41] RES: TRANSFORMED,FRAGMENTS_FOUND
101: [10:58:41] RES: TRANSFORMED,FRAGMENTS_FOUND
101: [10:58:41] 	done
101: [10:58:41] 	done
101: [10:58:41] *******************************************************
101: [10:58:41] *******************************************************
101/130 Test #101: testStructChecker ..................   Passed    0.08 sec
101/130 Test #101: testStructChecker ..................   Passed    0.08 sec
test 102
test 102
        Start 102: pyStructChecker
        Start 102: pyStructChecker
102: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/rough_test.py"
102: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/StructChecker/Wrap/rough_test.py"
102: Test timeout computed to be: 9.99988e+06
102: Test timeout computed to be: 9.99988e+06
102: ..
102: ..
102: ----------------------------------------------------------------------
102: ----------------------------------------------------------------------
102: Ran 2 tests in 0.011s
102: Ran 2 tests in 0.011s
102: 
102: 
102: OK
102: OK
102/130 Test #102: pyStructChecker ....................   Passed    0.14 sec
102/130 Test #102: pyStructChecker ....................   Passed    0.14 sec
test 103
test 103
        Start 103: testReducedGraphs
        Start 103: testReducedGraphs
103: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/testReducedGraphs
103: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/testReducedGraphs
103: Test timeout computed to be: 9.99988e+06
103: Test timeout computed to be: 9.99988e+06
103: [10:58:41] testing basics
103: [10:58:41] testing basics
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103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
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103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       1,     0.3,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
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103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     1.3,     1.3,     0.6,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     1.3,     1.3,     0.6,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     1.3,     1.3,     0.6,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     1.3,     1.3,     0.6,       1,     0.6,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
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103: 
103: 
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103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: Size: 315 [      0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,     0.3,       1,     0.3,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0,       0, ]
103: 
103: 
103: [10:58:41] done
103: [10:58:41] done
103: [10:58:41] testing basics2
103: [10:58:41] testing basics2
103: [10:58:41] done
103: [10:58:41] done
103/130 Test #103: testReducedGraphs ..................   Passed    0.05 sec
103/130 Test #103: testReducedGraphs ..................   Passed    0.05 sec
test 104
test 104
        Start 104: pyReducedGraphs
        Start 104: pyReducedGraphs
104: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py"
104: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ReducedGraphs/Wrap/testReducedGraphs.py"
104: Test timeout computed to be: 9.99988e+06
104: Test timeout computed to be: 9.99988e+06
104: ....
104: ....
104: ----------------------------------------------------------------------
104: ----------------------------------------------------------------------
104: Ran 4 tests in 0.010s
104: Ran 4 tests in 0.010s
104: 
104: 
104: OK
104: OK
104/130 Test #104: pyReducedGraphs ....................   Passed    0.12 sec
104/130 Test #104: pyReducedGraphs ....................   Passed    0.12 sec
test 105
test 105
        Start 105: trajectoryTest
        Start 105: trajectoryTest
105: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest
105: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/trajectoryTest
105: Test timeout computed to be: 9.99988e+06
105: Test timeout computed to be: 9.99988e+06
105: [10:58:41] ***********************************************************
105: [10:58:41] ***********************************************************
105: [10:58:41] Testing Trajectory
105: [10:58:41] Testing Trajectory
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: d_pos must not be NULL
105: d_pos must not be NULL
105: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_pos
105: Failed Expression: d_pos
105: ****
105: ****
105: 
105: 
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: d_trajectory must not be NULL
105: d_trajectory must not be NULL
105: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory
105: Failed Expression: d_trajectory
105: ****
105: ****
105: 
105: 
105: [10:58:41] -------------------------------------
105: [10:58:41] -------------------------------------
105: [10:58:41] testTrajectory2D
105: [10:58:41] testTrajectory2D
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Range Error
105: Range Error
105: snapshotNum
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 5 < 5
105: Failed Expression: 5 < 5
105: ****
105: ****
105: 
105: 
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Range Error
105: Range Error
105: pointNum
105: pointNum
105: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 10 < 10
105: Failed Expression: 10 < 10
105: ****
105: ****
105: 
105: 
105: [10:58:41] done
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] -------------------------------------
105: [10:58:41] testTrajectory3D
105: [10:58:41] testTrajectory3D
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Range Error
105: Range Error
105: snapshotNum
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 5 < 5
105: Failed Expression: 5 < 5
105: ****
105: ****
105: 
105: 
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: d_dimension must be == 2
105: d_dimension must be == 2
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory->dimension() == 2
105: Failed Expression: d_trajectory->dimension() == 2
105: ****
105: ****
105: 
105: 
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: d_dimension must be == 2
105: d_dimension must be == 2
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: d_trajectory->dimension() == 2
105: Failed Expression: d_trajectory->dimension() == 2
105: ****
105: ****
105: 
105: 
105: [10:58:41] done
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] -------------------------------------
105: [10:58:41] testReadAmber
105: [10:58:41] testReadAmber
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: The trajectory must have dimension == 3
105: The trajectory must have dimension == 3
105: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: traj.dimension() == 3
105: Failed Expression: traj.dimension() == 3
105: ****
105: ****
105: 
105: 
105: [10:58:41] Error while reading file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad.trx
105: [10:58:41] Error while reading file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad.trx
105: [10:58:41] Premature end of file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad2.trx
105: [10:58:41] Premature end of file: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/test_data/water_coords_bad2.trx
105: [10:58:41] done
105: [10:58:41] done
105: [10:58:41] -------------------------------------
105: [10:58:41] -------------------------------------
105: [10:58:41] testReadGromos
105: [10:58:41] testReadGromos
105: [10:58:41] 
105: [10:58:41] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: The trajectory must have dimension == 3
105: The trajectory must have dimension == 3
105: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: traj.dimension() == 3
105: Failed Expression: traj.dimension() == 3
105: ****
105: ****
105: 
105: 
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] Wrong number of coordinates
105: [10:58:41] done
105: [10:58:41] done
105: [10:58:41] -----------------------
105: [10:58:41] -----------------------
105: [10:58:41] Testing adding conformers from a trajectory
105: [10:58:41] Testing adding conformers from a trajectory
105: [10:58:42] 
105: [10:58:42] 
105: 
105: 
105: ****
105: ****
105: Range Error
105: Range Error
105: snapshotNum
105: snapshotNum
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: 0 < 0
105: Failed Expression: 0 < 0
105: ****
105: ****
105: 
105: 
105: [10:58:42] snapshotNum
105: [10:58:42] snapshotNum
105: [10:58:42] -------------------------------------
105: [10:58:42] -------------------------------------
105: [10:58:42] testAddConformersFromAmberTrajectory
105: [10:58:42] testAddConformersFromAmberTrajectory
105: [10:58:42] 
105: [10:58:42] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: from must be < size()
105: from must be < size()
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: from < static_cast<int>(size())
105: Failed Expression: from < static_cast<int>(size())
105: ****
105: ****
105: 
105: 
105: [10:58:42] done
105: [10:58:42] done
105: [10:58:42] -------------------------------------
105: [10:58:42] -------------------------------------
105: [10:58:42] testAddConformersFromGromosTrajectory
105: [10:58:42] testAddConformersFromGromosTrajectory
105: [10:58:42] 
105: [10:58:42] 
105: 
105: 
105: ****
105: ****
105: Pre-condition Violation
105: Pre-condition Violation
105: from must be < size()
105: from must be < size()
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
105: Failed Expression: from < static_cast<int>(size())
105: Failed Expression: from < static_cast<int>(size())
105: ****
105: ****
105: 
105: 
105: [10:58:42] done
105: [10:58:42] done
105/130 Test #105: trajectoryTest .....................   Passed    0.23 sec
105/130 Test #105: trajectoryTest .....................   Passed    0.23 sec
test 106
test 106
        Start 106: substructLibraryTest
        Start 106: substructLibraryTest
106: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest
106: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/substructLibraryTest
106: Test timeout computed to be: 9.99988e+06
106: Test timeout computed to be: 9.99988e+06
106: [10:58:42] -------------------------------------
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test1
106: [10:58:42]     Test1
106: [10:58:42]   done
106: [10:58:42]   done
106: [10:58:42] -------------------------------------
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test2
106: [10:58:42]     Test2
106: [10:58:42]   done
106: [10:58:42]   done
106: [10:58:42] -------------------------------------
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test3 (stereo options)
106: [10:58:42]     Test3 (stereo options)
106: [10:58:42]     Done (stereo options)
106: [10:58:42]     Done (stereo options)
106: [10:58:42] -------------------------------------
106: [10:58:42] -------------------------------------
106: [10:58:42]     Test4 (trusted smiles)
106: [10:58:42]     Test4 (trusted smiles)
106: [10:58:42]     Done (stereo options)
106: [10:58:42]     Done (stereo options)
106/130 Test #106: substructLibraryTest ...............   Passed    0.25 sec
106/130 Test #106: substructLibraryTest ...............   Passed    0.25 sec
test 107
test 107
        Start 107: pySubstructLibrary
        Start 107: pySubstructLibrary
107: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/rough_test.py"
107: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SubstructLibrary/Wrap/rough_test.py"
107: Test timeout computed to be: 9.99988e+06
107: Test timeout computed to be: 9.99988e+06
107: .......
107: .......
107: ----------------------------------------------------------------------
107: ----------------------------------------------------------------------
107: Ran 7 tests in 1.111s
107: Ran 7 tests in 1.111s
107: 
107: 
107: OK
107: OK
107/130 Test #107: pySubstructLibrary .................   Passed    1.32 sec
107/130 Test #107: pySubstructLibrary .................   Passed    1.32 sec
test 108
test 108
        Start 108: testRGroupDecomp
        Start 108: testRGroupDecomp
108: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp
108: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/testRGroupDecomp
108: Test timeout computed to be: 9.99988e+06
108: Test timeout computed to be: 9.99988e+06
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] Testing R-Group Decomposition 
108: [10:58:43] Testing R-Group Decomposition 
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp symmetry matching
108: [10:58:43] test rgroup decomp symmetry matching
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp rgroup only matching
108: [10:58:43] test rgroup decomp rgroup only matching
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp ring matching
108: [10:58:43] test rgroup decomp ring matching
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] test rgroup decomp full ring dummy core
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test multi core
108: [10:58:43] test multi core
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test Github #1550: Kekulization error from R-group decomposition
108: [10:58:43] test Github #1550: Kekulization error from R-group decomposition
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test remove sidechain Hs
108: [10:58:43] test remove sidechain Hs
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108: [10:58:43] test preferring grouping non hydrogens over hydrogens if possible
108: [10:58:43] test preferring grouping non hydrogens over hydrogens if possible
108: [10:58:43] ********************************************************
108: [10:58:43] ********************************************************
108/130 Test #108: testRGroupDecomp ...................   Passed    0.13 sec
108/130 Test #108: testRGroupDecomp ...................   Passed    0.13 sec
test 109
test 109
        Start 109: pyRGroupDecomposition
        Start 109: pyRGroupDecomposition
109: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py"
109: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RGroupDecomposition/Wrap/test_rgroups.py"
109: Test timeout computed to be: 9.99988e+06
109: Test timeout computed to be: 9.99988e+06
109: ...
109: ...
109: ----------------------------------------------------------------------
109: ----------------------------------------------------------------------
109: Ran 3 tests in 0.101s
109: Ran 3 tests in 0.101s
109: 
109: 
109: OK
109: OK
109/130 Test #109: pyRGroupDecomposition ..............   Passed    0.22 sec
109/130 Test #109: pyRGroupDecomposition ..............   Passed    0.22 sec
test 110
test 110
        Start 110: testSLNParse
        Start 110: testSLNParse
110: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/testSLNParse
110: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/testSLNParse
110: Test timeout computed to be: 9.99988e+06
110: Test timeout computed to be: 9.99988e+06
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test1 
110: [10:58:44] Test1 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test2: bond orders 
110: [10:58:44] Test2: bond orders 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test3: atom properties 
110: [10:58:44] Test3: atom properties 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test4: hydrogen handling 
110: [10:58:44] Test4: hydrogen handling 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4[I=13]
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4[I=13]
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test5: basic queries 
110: [10:58:44] Test5: basic queries 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test6: ring queries 
110: [10:58:44] Test6: ring queries 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test7: qualified queries 
110: [10:58:44] Test7: qualified queries 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test8: more complex atom properties 
110: [10:58:44] Test8: more complex atom properties 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test9: recursive SLNs 
110: [10:58:44] Test9: recursive SLNs 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test10: nested recursive SLNs 
110: [10:58:44] Test10: nested recursive SLNs 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test12: bond queries and properties 
110: [10:58:44] Test12: bond queries and properties 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test13: ring closure details 
110: [10:58:44] Test13: ring closure details 
110: [10:58:44] SLN Parser error: Atom ID 1 appears *after* its ring closure.
110: [10:58:44] SLN Parser error: Atom ID 1 appears *after* its ring closure.
110: [10:58:44] SLN Parser error: Ring closure 1 does not have a corresponding opener.
110: [10:58:44] SLN Parser error: Ring closure 1 does not have a corresponding opener.
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test14: error catching 
110: [10:58:44] Test14: error catching 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test15: CTAB properties 
110: [10:58:44] Test15: CTAB properties 
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test16: simple macro atoms 
110: [10:58:44] Test16: simple macro atoms 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test1 
110: [10:58:44] Test1 
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test issue277: parse error with & 
110: [10:58:44] Test issue277: parse error with & 
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4	fff
110: [10:58:44] SLN Parse Error: syntax error while parsing: CH4	fff
110: [10:58:44] SLN Parse Error: syntax error while parsing: C[charge=+1] 	foo
110: [10:58:44] SLN Parse Error: syntax error while parsing: C[charge=+1] 	foo
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] -------------------------------------
110: [10:58:44] -------------------------------------
110: [10:58:44] Test issue278: handling of 'not' and 'is' queries on Any
110: [10:58:44] Test issue278: handling of 'not' and 'is' queries on Any
110: [10:58:44] 	done
110: [10:58:44] 	done
110: [10:58:44] Query property 'is' ignored on non-query atom
110: [10:58:44] Query property 'is' ignored on non-query atom
110: [10:58:44] Query property 'is' ignored on non-query atom
110: [10:58:44] Query property 'is' ignored on non-query atom
110/130 Test #110: testSLNParse .......................   Passed    0.07 sec
110/130 Test #110: testSLNParse .......................   Passed    0.07 sec
test 111
test 111
        Start 111: pySLNParse
        Start 111: pySLNParse
111: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/testSLN.py"
111: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/SLNParse/Wrap/testSLN.py"
111: Test timeout computed to be: 9.99988e+06
111: Test timeout computed to be: 9.99988e+06
111: ..
111: ..
111: ----------------------------------------------------------------------
111: ----------------------------------------------------------------------
111: Ran 2 tests in 0.007s
111: Ran 2 tests in 0.007s
111: 
111: 
111: OK
111: OK
111/130 Test #111: pySLNParse .........................   Passed    0.12 sec
111/130 Test #111: pySLNParse .........................   Passed    0.12 sec
test 112
test 112
        Start 112: pyGraphMolWrap
        Start 112: pyGraphMolWrap
112: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rough_test.py"
112: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/rough_test.py"
112: Test timeout computed to be: 9.99988e+06
112: Test timeout computed to be: 9.99988e+06
112: {'int': 1000, 'double': 10000.123}
112: {'int': 1000, 'double': 10000.123}
112: ..............[10:58:44] SMARTS Parse Error: syntax error for input: 'fiib'
112: ..............[10:58:44] SMARTS Parse Error: syntax error for input: 'fiib'
112: ....[10:58:44] ERROR: Problems encountered parsing data fields
112: ....[10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Spurious data before the first property will be ignored
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ID> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: Problems encountered parsing data fields
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] ERROR: moving to the begining of the next molecule
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: [10:58:44] Property <ANOTHER_PROPERTY> will be truncated after the first blank line
112: .[10:58:44] SMILES Parse Error: syntax error for input: 'fail'
112: .[10:58:44] SMILES Parse Error: syntax error for input: 'fail'
112: [10:58:44] ERROR: Smiles parse error on line 2
112: [10:58:44] ERROR: Smiles parse error on line 2
112: [10:58:44] ERROR: Cannot create molecule from : 'fail'
112: [10:58:44] ERROR: Cannot create molecule from : 'fail'
112: >>> This may result in an infinite loop.  It should finish almost instantly
112: >>> This may result in an infinite loop.  It should finish almost instantly
112: <<< OK, it finished.
112: <<< OK, it finished.
112: ............[10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: ............[10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: ............[10:58:44] non-ring atom 0 marked aromatic
112: ............[10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] 
112: [10:58:44] 
112: 
112: 
112: ****
112: ****
112: Range Error
112: Range Error
112: idx
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 12 < 6
112: Failed Expression: 12 < 6
112: ****
112: ****
112: 
112: 
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] non-ring atom 0 marked aromatic
112: [10:58:44] 
112: [10:58:44] 
112: 
112: 
112: ****
112: ****
112: Range Error
112: Range Error
112: idx
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 12 < 6
112: Failed Expression: 12 < 6
112: ****
112: ****
112: 
112: 
112: ...............[10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: ...............[10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: [10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: [10:58:44] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
112: ..............[10:58:44] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
112: ..............[10:58:44] Can't kekulize mol.  Unkekulized atoms: 0 1 2 3 4
112: 
112: 
112: [10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: [10:58:44] Explicit valence for atom # 1 C, 5, is greater than permitted
112: ...........................................[10:58:50] 
112: ...........................................[10:58:50] 
112: 
112: 
112: ****
112: ****
112: Pre-condition Violation
112: Pre-condition Violation
112: no owner
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: Failed Expression: dp_mol
112: ****
112: ****
112: 
112: 
112: [10:58:50] 
112: [10:58:50] 
112: 
112: 
112: ****
112: ****
112: Pre-condition Violation
112: Pre-condition Violation
112: no owner
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: Failed Expression: dp_mol
112: ****
112: ****
112: 
112: 
112: [10:58:50] 
112: [10:58:50] 
112: 
112: 
112: ****
112: ****
112: Pre-condition Violation
112: Pre-condition Violation
112: no owner
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: Failed Expression: dp_mol
112: ****
112: ****
112: 
112: 
112: [10:58:50] 
112: [10:58:50] 
112: 
112: 
112: ****
112: ****
112: Pre-condition Violation
112: Pre-condition Violation
112: no owner
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: Failed Expression: dp_mol
112: ****
112: ****
112: 
112: 
112: [10:58:50] 
112: [10:58:50] 
112: 
112: 
112: ****
112: ****
112: Pre-condition Violation
112: Pre-condition Violation
112: no owner
112: no owner
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Violation occurred on line 125 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.h
112: Failed Expression: dp_mol
112: Failed Expression: dp_mol
112: ****
112: ****
112: 
112: 
112: .....[10:58:50] 
112: .....[10:58:50] 
112: 
112: 
112: ****
112: ****
112: Range Error
112: Range Error
112: atomIdx1
112: atomIdx1
112: Violation occurred on line 274 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
112: Violation occurred on line 274 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/RWMol.cpp
112: Failed Expression: 0 < 0
112: Failed Expression: 0 < 0
112: ****
112: ****
112: 
112: 
112: ......[10:58:50] 
112: ......[10:58:50] 
112: 
112: 
112: ****
112: ****
112: Range Error
112: Range Error
112: idx
112: idx
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Violation occurred on line 149 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/ROMol.cpp
112: Failed Expression: 3 < 1
112: Failed Expression: 3 < 1
112: ****
112: ****
112: 
112: 
112: .[10:58:50] 1
112: .[10:58:50] 1
112: [10:58:50] 2
112: [10:58:50] 2
112: [10:58:50] 1
112: [10:58:50] 1
112: [10:58:50] 2
112: [10:58:50] 2
112: ............[10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: ............[10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: RDKit ERROR: [10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: RDKit ERROR: [10:58:50] SMILES Parse Error: syntax error for input: 'CCC |$foo;;bar$| ourname'
112: ......
112: ......
112: ----------------------------------------------------------------------
112: ----------------------------------------------------------------------
112: Ran 145 tests in 6.102s
112: Ran 145 tests in 6.102s
112: 
112: 
112: OK
112: OK
112/130 Test #112: pyGraphMolWrap .....................   Passed    6.27 sec
112/130 Test #112: pyGraphMolWrap .....................   Passed    6.27 sec
test 113
test 113
        Start 113: pyTestConformerWrap
        Start 113: pyTestConformerWrap
113: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testConformer.py"
113: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testConformer.py"
113: Test timeout computed to be: 9.99988e+06
113: Test timeout computed to be: 9.99988e+06
113: ......
113: ......
113: ----------------------------------------------------------------------
113: ----------------------------------------------------------------------
113: Ran 6 tests in 0.009s
113: Ran 6 tests in 0.009s
113: 
113: 
113: OK
113: OK
113/130 Test #113: pyTestConformerWrap ................   Passed    0.12 sec
113/130 Test #113: pyTestConformerWrap ................   Passed    0.12 sec
test 114
test 114
        Start 114: pyTestTrajectory
        Start 114: pyTestTrajectory
114: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testTrajectory.py"
114: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testTrajectory.py"
114: Test timeout computed to be: 9.99988e+06
114: Test timeout computed to be: 9.99988e+06
114: Testing Trajectory wrapper
114: Testing Trajectory wrapper
114: [10:58:50] 
114: [10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: from must be < size()
114: from must be < size()
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: from < static_cast<int>(size())
114: Failed Expression: from < static_cast<int>(size())
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: from must be < size()
114: from must be < size()
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 87 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: from < static_cast<int>(size())
114: Failed Expression: from < static_cast<int>(size())
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Range Error
114: Range Error
114: snapshotNum
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 0 < 0
114: Failed Expression: 0 < 0
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: The trajectory must have dimension == 3
114: The trajectory must have dimension == 3
114: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 106 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: traj.dimension() == 3
114: Failed Expression: traj.dimension() == 3
114: ****
114: ****
114: 
114: 
114: ..[10:58:50] 
114: ..[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: The trajectory must have dimension == 3
114: The trajectory must have dimension == 3
114: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 147 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: traj.dimension() == 3
114: Failed Expression: traj.dimension() == 3
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: d_pos must not be NULL
114: d_pos must not be NULL
114: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 23 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_pos
114: Failed Expression: d_pos
114: ****
114: ****
114: 
114: 
114: [10:58:50] 
114: [10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: d_trajectory must not be NULL
114: d_trajectory must not be NULL
114: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 24 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory
114: Failed Expression: d_trajectory
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Range Error
114: Range Error
114: snapshotNum
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 5 < 5
114: Failed Expression: 5 < 5
114: ****
114: ****
114: 
114: 
114: [10:58:50] 
114: [10:58:50] 
114: 
114: 
114: ****
114: ****
114: Range Error
114: Range Error
114: pointNum
114: pointNum
114: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 27 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 10 < 10
114: Failed Expression: 10 < 10
114: ****
114: ****
114: 
114: 
114: .[10:58:50] 
114: .[10:58:50] 
114: 
114: 
114: ****
114: ****
114: Range Error
114: Range Error
114: snapshotNum
114: snapshotNum
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 68 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: 5 < 5
114: Failed Expression: 5 < 5
114: ****
114: ****
114: 
114: 
114: [10:58:50] 
114: [10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: d_dimension must be == 2
114: d_dimension must be == 2
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory->dimension() == 2
114: Failed Expression: d_trajectory->dimension() == 2
114: ****
114: ****
114: 
114: 
114: [10:58:50] 
114: [10:58:50] 
114: 
114: 
114: ****
114: ****
114: Pre-condition Violation
114: Pre-condition Violation
114: d_dimension must be == 2
114: d_dimension must be == 2
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Violation occurred on line 25 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Trajectory/Trajectory.cpp
114: Failed Expression: d_trajectory->dimension() == 2
114: Failed Expression: d_trajectory->dimension() == 2
114: ****
114: ****
114: 
114: 
114: .
114: .
114: ----------------------------------------------------------------------
114: ----------------------------------------------------------------------
114: Ran 9 tests in 0.197s
114: Ran 9 tests in 0.197s
114: 
114: 
114: OK
114: OK
114/130 Test #114: pyTestTrajectory ...................   Passed    0.33 sec
114/130 Test #114: pyTestTrajectory ...................   Passed    0.33 sec
test 115
test 115
        Start 115: pyTestThreads
        Start 115: pyTestThreads
115: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testThreads.py"
115: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Wrap/testThreads.py"
115: Test timeout computed to be: 9.99988e+06
115: Test timeout computed to be: 9.99988e+06
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: 
115: 
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 1:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 2:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 3:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 4:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 5:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 6:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 7:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 8:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 9:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 10:: All good boys to fine
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 1:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 2:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 3:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 4:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 5:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 6:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 7:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 8:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 9:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115: [10:58:51] 10:: My dog has fleas
115/130 Test #115: pyTestThreads ......................   Passed    0.17 sec
115/130 Test #115: pyTestThreads ......................   Passed    0.17 sec
test 116
test 116
        Start 116: testQuery
        Start 116: testQuery
116: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/testQuery
116: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/Query/testQuery
116: Test timeout computed to be: 9.99988e+06
116: Test timeout computed to be: 9.99988e+06
116: Query
116: Query
116: Query2
116: Query2
116: Equality
116: Equality
116: Greater
116: Greater
116: GreaterEqual
116: GreaterEqual
116: Less
116: Less
116: LessEqual
116: LessEqual
116: Open Range
116: Open Range
116: Closed Range
116: Closed Range
116: Float
116: Float
116: With Tolerance
116: With Tolerance
116: Set
116: Set
116: And
116: And
116: Or
116: Or
116: XOr
116: XOr
116: pointer and copy foo
116: pointer and copy foo
116: Set2
116: Set2
116/130 Test #116: testQuery ..........................   Passed    0.07 sec
116/130 Test #116: testQuery ..........................   Passed    0.07 sec
test 117
test 117
        Start 117: testMatCalc
        Start 117: testMatCalc
117: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc
117: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/testMatCalc
117: Test timeout computed to be: 9.99988e+06
117: Test timeout computed to be: 9.99988e+06
117: 1.68022e+08
117: 1.68022e+08
117: 1.73149e+08
117: 1.73149e+08
117: 1.05549e+08
117: 1.05549e+08
117: 7.20603e+07
117: 7.20603e+07
117: 1.41535e+08
117: 1.41535e+08
117: 1.08592e+08
117: 1.08592e+08
117: 1.11334e+08
117: 1.11334e+08
117: 2.05553e+08
117: 2.05553e+08
117: 1.54962e+08
117: 1.54962e+08
117: 8.08231e+07
117: 8.08231e+07
117: 5.61421e+07
117: 5.61421e+07
117: 1.28874e+08
117: 1.28874e+08
117: 1.59011e+08
117: 1.59011e+08
117: 8.69902e+07
117: 8.69902e+07
117: 1.31367e+08
117: 1.31367e+08
117: 2.27389e+08
117: 2.27389e+08
117: 1.60289e+08
117: 1.60289e+08
117: 7.79813e+07
117: 7.79813e+07
117: 1.61001e+08
117: 1.61001e+08
117: 2.07599e+08
117: 2.07599e+08
117: 2.24432e+08
117: 2.24432e+08
117: 1.39725e+08
117: 1.39725e+08
117: 2.42614e+08
117: 2.42614e+08
117: 1.77578e+08
117: 1.77578e+08
117: 1.05908e+08
117: 1.05908e+08
117: 9.06742e+07
117: 9.06742e+07
117: 1.8087e+08
117: 1.8087e+08
117: 1.98182e+08
117: 1.98182e+08
117: 2.03052e+08
117: 2.03052e+08
117: 1.7673e+08
117: 1.7673e+08
117: 9.32798e+07
117: 9.32798e+07
117: 1.37969e+08
117: 1.37969e+08
117: 1.83778e+08
117: 1.83778e+08
117: 2.1228e+08
117: 2.1228e+08
117: 5.06157e+07
117: 5.06157e+07
117: 1.566e+08
117: 1.566e+08
117: 2.37142e+08
117: 2.37142e+08
117: 1.49345e+08
117: 1.49345e+08
117: 7.05819e+07
117: 7.05819e+07
117: 1.71633e+08
117: 1.71633e+08
117: 1.96817e+08
117: 1.96817e+08
117: 2.18246e+08
117: 2.18246e+08
117: 9.49496e+07
117: 9.49496e+07
117: 2.25618e+08
117: 2.25618e+08
117: 1.30219e+08
117: 1.30219e+08
117/130 Test #117: testMatCalc ........................   Passed    0.02 sec
117/130 Test #117: testMatCalc ........................   Passed    0.02 sec
test 118
test 118
        Start 118: pyMatCalc
        Start 118: pyMatCalc
118: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py"
118: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py"
118: Test timeout computed to be: 9.99988e+06
118: Test timeout computed to be: 9.99988e+06
118: .....
118: .....
118: ----------------------------------------------------------------------
118: ----------------------------------------------------------------------
118: Ran 5 tests in 0.300s
118: Ran 5 tests in 0.300s
118: 
118: 
118: OK
118: OK
118/130 Test #118: pyMatCalc ..........................   Passed    0.40 sec
118/130 Test #118: pyMatCalc ..........................   Passed    0.40 sec
test 119
test 119
        Start 119: testSimDivPickers
        Start 119: testSimDivPickers
119: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/testSimDivPickers
119: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/testSimDivPickers
119: Test timeout computed to be: 9.99988e+06
119: Test timeout computed to be: 9.99988e+06
119: [10:58:51] -------------------------------------
119: [10:58:51] -------------------------------------
119: [10:58:51] Testing github issue 1421: MaxMinPicker picking non-existent element.
119: [10:58:51] Testing github issue 1421: MaxMinPicker picking non-existent element.
119: [10:58:51] Done
119: [10:58:51] Done
119/130 Test #119: testSimDivPickers ..................   Passed    0.02 sec
119/130 Test #119: testSimDivPickers ..................   Passed    0.02 sec
test 120
test 120
        Start 120: pySimDivPickers
        Start 120: pySimDivPickers
120: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/testPickers.py"
120: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/SimDivPickers/Wrap/testPickers.py"
120: Test timeout computed to be: 9.99988e+06
120: Test timeout computed to be: 9.99988e+06
120: [10:58:51] the useCache argument is deprecated and ignored
120: [10:58:51] the useCache argument is deprecated and ignored
120: ..[10:58:51] the useCache argument is deprecated and ignored
120: ..[10:58:51] the useCache argument is deprecated and ignored
120: [10:58:51] the useCache argument is deprecated and ignored
120: [10:58:51] the useCache argument is deprecated and ignored
120: .[10:58:51] the useCache argument is deprecated and ignored
120: .[10:58:51] the useCache argument is deprecated and ignored
120: ......
120: ......
120: ----------------------------------------------------------------------
120: ----------------------------------------------------------------------
120: Ran 9 tests in 0.189s
120: Ran 9 tests in 0.189s
120: 
120: 
120: OK
120: OK
120/130 Test #120: pySimDivPickers ....................   Passed    0.30 sec
120/130 Test #120: pySimDivPickers ....................   Passed    0.30 sec
test 121
test 121
        Start 121: pyRanker
        Start 121: pyRanker
121: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/testRanker.py"
121: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/Wrap/testRanker.py"
121: Test timeout computed to be: 9.99988e+06
121: Test timeout computed to be: 9.99988e+06
121: ..[10:58:52] 
121: ..[10:58:52] 
121: 
121: 
121: ****
121: ****
121: Invariant Violation
121: Invariant Violation
121: Can't rank more bits than the ensemble size
121: Can't rank more bits than the ensemble size
121: Violation occurred on line 158 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/InfoBitRanker.cpp
121: Violation occurred on line 158 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ML/InfoTheory/InfoBitRanker.cpp
121: Failed Expression: num <= dp_maskBits->getNumOnBits()
121: Failed Expression: num <= dp_maskBits->getNumOnBits()
121: ****
121: ****
121: 
121: 
121: ...
121: ...
121: ----------------------------------------------------------------------
121: ----------------------------------------------------------------------
121: Ran 5 tests in 0.026s
121: Ran 5 tests in 0.026s
121: 
121: 
121: OK
121: OK
121/130 Test #121: pyRanker ...........................   Passed    0.12 sec
121/130 Test #121: pyRanker ...........................   Passed    0.12 sec
test 122
test 122
        Start 122: testChemicalFeatures
        Start 122: testChemicalFeatures
122: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/testChemicalFeatures
122: Test command: /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/testChemicalFeatures
122: Test timeout computed to be: 9.99988e+06
122: Test timeout computed to be: 9.99988e+06
122: -----------------------------------------
122: -----------------------------------------
122: Test1
122: Test1
122: Done
122: Done
122/130 Test #122: testChemicalFeatures ...............   Passed    0.03 sec
122/130 Test #122: testChemicalFeatures ...............   Passed    0.03 sec
test 123
test 123
        Start 123: pyFeatures
        Start 123: pyFeatures
123: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/testFeatures.py"
123: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/ChemicalFeatures/Wrap/testFeatures.py"
123: Test timeout computed to be: 9.99988e+06
123: Test timeout computed to be: 9.99988e+06
123: ..
123: ..
123: ----------------------------------------------------------------------
123: ----------------------------------------------------------------------
123: Ran 2 tests in 0.009s
123: Ran 2 tests in 0.009s
123: Testing ChemicalFeatures Wrapper code:
123: Testing ChemicalFeatures Wrapper code:
123: 
123: 
123: OK
123: OK
123/130 Test #123: pyFeatures .........................   Passed    0.12 sec
123/130 Test #123: pyFeatures .........................   Passed    0.12 sec
test 124
test 124
        Start 124: pythonTestDbCLI
        Start 124: pythonTestDbCLI
124: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects"
124: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Projects"
124: Test timeout computed to be: 9.99988e+06
124: Test timeout computed to be: 9.99988e+06
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO:   Processing 10 molecules
124: [10:58:52] INFO:   Processing 10 molecules
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:52] INFO: Finished.
124: [10:58:52] INFO: Finished.
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Reading molecules and constructing molecular database.
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:58:52] INFO:   Processing 163 molecules
124: [10:58:52] INFO:   Processing 163 molecules
124: [10:58:52] INFO:   done 100
124: [10:58:52] INFO:   done 100
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:52] INFO: Generating fingerprints and descriptors:
124: [10:58:55] INFO: Finished.
124: [10:58:55] INFO: Finished.
124: [10:58:55] INFO: Reading query molecules and generating fingerprints
124: [10:58:55] INFO: Reading query molecules and generating fingerprints
124: [10:58:55] INFO: Finding Neighbors
124: [10:58:55] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Reading query molecules and generating fingerprints
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: Finding Neighbors
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: The search took 0.1 seconds
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Doing property query
124: [10:58:56] INFO: Doing property query
124: [10:58:56] INFO: Found 30 molecules matching the query
124: [10:58:56] INFO: Found 30 molecules matching the query
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Creating output
124: [10:58:56] INFO: Done!
124: [10:58:56] INFO: Done!
124: [10:58:57] INFO: Doing property query
124: [10:58:57] INFO: Doing property query
124: [10:58:57] INFO: Found 30 molecules matching the query
124: [10:58:57] INFO: Found 30 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Found 49 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Found 114 molecules matching the query
124: [10:58:57] INFO: Found 114 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO:    Fingerprint screenout rate: 23 of 30 (%76.67)
124: [10:58:57] INFO:    Fingerprint screenout rate: 23 of 30 (%76.67)
124: [10:58:57] INFO: Found 5 molecules matching the query
124: [10:58:57] INFO: Found 5 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Doing substructure query
124: [10:58:57] INFO: Found 25 molecules matching the query
124: [10:58:57] INFO: Found 25 molecules matching the query
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Creating output
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Done!
124: [10:58:57] INFO: Reading query molecules and generating fingerprints
124: [10:58:57] INFO: Reading query molecules and generating fingerprints
124: [10:58:59] INFO: Finding Neighbors
124: [10:58:59] INFO: Finding Neighbors
124: [10:59:00] INFO: The search took 0.4 seconds
124: [10:59:00] INFO: The search took 0.4 seconds
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Reading query molecules and generating fingerprints
124: [10:59:00] INFO: Reading query molecules and generating fingerprints
124: [10:59:00] INFO: Finding Neighbors
124: [10:59:00] INFO: Finding Neighbors
124: [10:59:00] INFO: The search took 0.0 seconds
124: [10:59:00] INFO: The search took 0.0 seconds
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Creating output
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Done!
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO:   Processing 10 molecules
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Reading molecules and constructing molecular database.
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Generating fingerprints and descriptors:
124: [10:59:00] INFO: Finished.
124: [10:59:00] INFO: Finished.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Guessing that mol format is 'sdf'. Use --molFormat argument if this is wrong.
124: [10:59:01] INFO: Guessing that mol format is 'sdf'. Use --molFormat argument if this is wrong.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Reading molecules and constructing molecular database.
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:01] INFO:   Processing 163 molecules
124: [10:59:01] INFO:   Processing 163 molecules
124: [10:59:01] INFO:   done 100
124: [10:59:01] INFO:   done 100
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Generating fingerprints and descriptors:
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Finished.
124: [10:59:01] INFO: Reading query molecules and generating fingerprints
124: [10:59:01] INFO: Reading query molecules and generating fingerprints
124: [10:59:01] INFO: Finding Neighbors
124: [10:59:01] INFO: Finding Neighbors
124: [10:59:02] INFO: The search took 0.1 seconds
124: [10:59:02] INFO: The search took 0.1 seconds
124: [10:59:02] INFO: Creating output
124: [10:59:02] INFO: Creating output
124: [10:59:02] INFO: Done!
124: [10:59:02] INFO: Done!
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Finished.
124: [10:59:02] INFO: Finished.
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Reading molecules and constructing molecular database.
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO:   Processing 10 molecules
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Generating fingerprints and descriptors:
124: [10:59:02] INFO: Finished.
124: [10:59:02] INFO: Finished.
124: ............
124: ............
124: ----------------------------------------------------------------------
124: ----------------------------------------------------------------------
124: Ran 12 tests in 10.308s
124: Ran 12 tests in 10.308s
124: 
124: 
124: OK
124: OK
124/130 Test #124: pythonTestDbCLI ....................   Passed   10.38 sec
124/130 Test #124: pythonTestDbCLI ....................   Passed   10.38 sec
test 125
test 125
        Start 125: pythonTestDirML
        Start 125: pythonTestDirML
125: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML"
125: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/ML"
125: Test timeout computed to be: 9.99988e+06
125: Test timeout computed to be: 9.99988e+06
125: .......
125: .......
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 7 tests in 0.502s
125: Ran 7 tests in 0.502s
125: 
125: 
125: OK
125: OK
125: ............
125: ............
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 12 tests in 0.092s
125: Ran 12 tests in 0.092s
125: 
125: 
125: OK
125: OK
125: .
125: .
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 1 test in 0.063s
125: Ran 1 test in 0.063s
125: 
125: 
125: OK
125: OK
125: ...
125: ...
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.001s
125: Ran 3 tests in 0.001s
125: 
125: 
125: OK
125: OK
125: ........
125: ........
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 8 tests in 0.000s
125: Ran 8 tests in 0.000s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.351s
125: Ran 4 tests in 0.351s
125: 
125: 
125: OK
125: OK
125: .....
125: .....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.002s
125: Ran 5 tests in 0.002s
125: 
125: 
125: OK
125: OK
125: .........
125: .........
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 9 tests in 0.015s
125: Ran 9 tests in 0.015s
125: 
125: 
125: OK
125: OK
125: ............
125: ............
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 12 tests in 0.002s
125: Ran 12 tests in 0.002s
125: 
125: 
125: OK
125: OK
125: .....
125: .....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.168s
125: Ran 5 tests in 0.168s
125: 
125: 
125: OK
125: OK
125: .
125: .
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 1 test in 0.000s
125: Ran 1 test in 0.000s
125: 
125: 
125: OK
125: OK
125: ......
125: ......
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.002s
125: Ran 6 tests in 0.002s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.350s
125: Ran 4 tests in 0.350s
125: 
125: 
125: OK
125: OK
125: ......
125: ......
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.015s
125: Ran 6 tests in 0.015s
125: 
125: 
125: OK
125: OK
125: ..
125: ..
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 2 tests in 0.098s
125: Ran 2 tests in 0.098s
125: 
125: 
125: OK
125: OK
125: ..........
125: ..........
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 10 tests in 0.029s
125: Ran 10 tests in 0.029s
125: 
125: 
125: OK
125: OK
125: .....
125: .....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 5 tests in 0.064s
125: Ran 5 tests in 0.064s
125: 
125: 
125: OK
125: OK
125: ..
125: ..
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 2 tests in 0.002s
125: Ran 2 tests in 0.002s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.007s
125: Ran 4 tests in 0.007s
125: 
125: 
125: OK
125: OK
125: ...
125: ...
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.032s
125: Ran 3 tests in 0.032s
125: 
125: 
125: OK
125: OK
125: ...
125: ...
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 3 tests in 0.236s
125: Ran 3 tests in 0.236s
125: 
125: 
125: OK
125: OK
125: ......
125: ......
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 6 tests in 0.366s
125: Ran 6 tests in 0.366s
125: 
125: 
125: OK
125: OK
125: .......
125: .......
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 7 tests in 0.207s
125: Ran 7 tests in 0.207s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.011s
125: Ran 4 tests in 0.011s
125: 
125: 
125: OK
125: OK
125: .....
125: .....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 5 tests in 2.288s
125: Ran 5 tests in 2.288s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.002s
125: Ran 4 tests in 0.002s
125: 
125: 
125: OK
125: OK
125: ....
125: ....
125: ----------------------------------------------------------------------
125: ----------------------------------------------------------------------
125: Ran 4 tests in 0.000s
125: Ran 4 tests in 0.000s
125: 
125: 
125: OK
125: OK
125/130 Test #125: pythonTestDirML ....................   Passed    7.93 sec
125/130 Test #125: pythonTestDirML ....................   Passed    7.93 sec
test 126
test 126
        Start 126: pythonTestDirDataStructs
        Start 126: pythonTestDirDataStructs
126: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs"
126: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/DataStructs"
126: Test timeout computed to be: 9.99988e+06
126: Test timeout computed to be: 9.99988e+06
126: .......
126: .......
126: ----------------------------------------------------------------------
126: ----------------------------------------------------------------------
126: Ran 7 tests in 0.014s
126: Ran 7 tests in 0.014s
126: 
126: 
126: OK
126: OK
126: ..................................
126: ..................................
126: ----------------------------------------------------------------------
126: ----------------------------------------------------------------------
126: Ran 34 tests in 0.003s
126: Ran 34 tests in 0.003s
126: 
126: 
126: OK
126: OK
126: .....
126: .....
126: ----------------------------------------------------------------------
126: ----------------------------------------------------------------------
126: Ran 5 tests in 0.018s
126: Ran 5 tests in 0.018s
126: 
126: 
126: OK
126: OK
126: .......
126: .......
126: ----------------------------------------------------------------------
126: ----------------------------------------------------------------------
126: Ran 7 tests in 0.001s
126: Ran 7 tests in 0.001s
126: 
126: 
126: OK
126: OK
126/130 Test #126: pythonTestDirDataStructs ...........   Passed    0.49 sec
126/130 Test #126: pythonTestDirDataStructs ...........   Passed    0.49 sec
test 127
test 127
        Start 127: pythonTestDirDbase
        Start 127: pythonTestDirDbase
127: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase"
127: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Dbase"
127: Test timeout computed to be: 9.99988e+06
127: Test timeout computed to be: 9.99988e+06
127: ..
127: ..
127: ----------------------------------------------------------------------
127: ----------------------------------------------------------------------
127: Ran 2 tests in 0.009s
127: Ran 2 tests in 0.009s
127: 
127: 
127: OK
127: OK
127: ...........
127: ...........
127: ----------------------------------------------------------------------
127: ----------------------------------------------------------------------
127: Ran 11 tests in 0.012s
127: Ran 11 tests in 0.012s
127: 
127: 
127: OK
127: OK
127: .
127: .
127: ----------------------------------------------------------------------
127: ----------------------------------------------------------------------
127: Ran 1 test in 0.001s
127: Ran 1 test in 0.001s
127: 
127: 
127: OK
127: OK
127: ...............
127: ...............
127: ----------------------------------------------------------------------
127: ----------------------------------------------------------------------
127: Ran 15 tests in 0.021s
127: Ran 15 tests in 0.021s
127: 
127: 
127: OK
127: OK
127: ......
127: ......
127: ----------------------------------------------------------------------
127: ----------------------------------------------------------------------
127: Ran 6 tests in 0.004s
127: Ran 6 tests in 0.004s
127: 
127: 
127: OK
127: OK
127/130 Test #127: pythonTestDirDbase .................   Passed    0.25 sec
127/130 Test #127: pythonTestDirDbase .................   Passed    0.25 sec
test 128
test 128
        Start 128: pythonTestDirSimDivFilters
        Start 128: pythonTestDirSimDivFilters
128: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters"
128: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/SimDivFilters"
128: Test timeout computed to be: 9.99988e+06
128: Test timeout computed to be: 9.99988e+06
128/130 Test #128: pythonTestDirSimDivFilters .........   Passed    0.17 sec
128/130 Test #128: pythonTestDirSimDivFilters .........   Passed    0.17 sec
test 129
test 129
        Start 129: pythonTestDirVLib
        Start 129: pythonTestDirVLib
129: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib"
129: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/VLib"
129: Test timeout computed to be: 9.99988e+06
129: Test timeout computed to be: 9.99988e+06
129: .............
129: .............
129: ----------------------------------------------------------------------
129: ----------------------------------------------------------------------
129: Ran 13 tests in 0.008s
129: Ran 13 tests in 0.008s
129: 
129: 
129: OK
129: OK
129: ...........
129: ...........
129: ----------------------------------------------------------------------
129: ----------------------------------------------------------------------
129: Ran 11 tests in 0.038s
129: Ran 11 tests in 0.038s
129: 
129: 
129: OK
129: OK
129/130 Test #129: pythonTestDirVLib ..................   Passed    0.30 sec
129/130 Test #129: pythonTestDirVLib ..................   Passed    0.30 sec
test 130
test 130
        Start 130: pythonTestDirChem
        Start 130: pythonTestDirChem
130: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem"
130: Test command: /usr/bin/python2 "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem"
130: Test timeout computed to be: 9.99988e+06
130: Test timeout computed to be: 9.99988e+06
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.040s
130: Ran 4 tests in 0.040s
130: 
130: 
130: OK
130: OK
130: ......
130: ......
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.035s
130: Ran 6 tests in 0.035s
130: 
130: 
130: OK
130: OK
130: ....[10:59:12] 
130: ....[10:59:12] 
130: 
130: 
130: ****
130: ****
130: Pre-condition Violation
130: Pre-condition Violation
130: valence not defined for atoms not associated with molecules
130: valence not defined for atoms not associated with molecules
130: Violation occurred on line 267 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
130: Violation occurred on line 267 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/Atom.cpp
130: Failed Expression: dp_mol
130: Failed Expression: dp_mol
130: ****
130: ****
130: 
130: 
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 5 tests in 0.008s
130: Ran 5 tests in 0.008s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.007s
130: Ran 4 tests in 0.007s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.012s
130: Ran 2 tests in 0.012s
130: 
130: 
130: OK
130: OK
130: ......................
130: ......................
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 22 tests in 0.028s
130: Ran 22 tests in 0.028s
130: 
130: 
130: OK
130: OK
130: .....s.................ss
130: .....s.................ss
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 25 tests in 0.129s
130: Ran 25 tests in 0.129s
130: 
130: 
130: OK (skipped=3)
130: OK (skipped=3)
130: ..s
130: ..s
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.137s
130: Ran 3 tests in 0.137s
130: 
130: 
130: OK (skipped=1)
130: OK (skipped=1)
130: ...................................
130: ...................................
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 35 tests in 1.187s
130: Ran 35 tests in 1.187s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.020s
130: Ran 4 tests in 0.020s
130: 
130: 
130: OK
130: OK
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.008s
130: Ran 1 test in 0.008s
130: 
130: 
130: OK
130: OK
130: ......
130: ......
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.028s
130: Ran 6 tests in 0.028s
130: 
130: 
130: OK
130: OK
130: ...
130: ...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.045s
130: Ran 3 tests in 0.045s
130: 
130: 
130: OK
130: OK
130: .ss.ss.......
130: .ss.ss.......
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 13 tests in 0.926s
130: Ran 13 tests in 0.926s
130: 
130: 
130: OK (skipped=4)
130: OK (skipped=4)
130: ...........[10:59:26] WARNING: More than one matching pattern found - picking one
130: ...........[10:59:26] WARNING: More than one matching pattern found - picking one
130: [10:59:26] WARNING: More than one matching pattern found - picking one
130: [10:59:26] WARNING: More than one matching pattern found - picking one
130: .[10:59:26] WARNING: More than one matching pattern found - picking one
130: .[10:59:26] WARNING: More than one matching pattern found - picking one
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 14 tests in 10.213s
130: Ran 14 tests in 10.213s
130: 
130: 
130: OK
130: OK
130: ........
130: ........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.290s
130: Ran 8 tests in 0.290s
130: 
130: 
130: OK
130: OK
130: ...........
130: ...........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 11 tests in 3.575s
130: Ran 11 tests in 3.575s
130: 
130: 
130: OK
130: OK
130: [10:59:30] WARNING: Omitted undefined stereo
130: [10:59:30] WARNING: Omitted undefined stereo
130: [10:59:30] WARNING: Proton(s) added/removed
130: [10:59:30] WARNING: Proton(s) added/removed
130: .....
130: .....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 5 tests in 9.020s
130: Ran 5 tests in 9.020s
130: 
130: 
130: OK
130: OK
130: 
130: 
130: InChI write Summary: 1164 identical, 0 suffix variance, 17 reasonable
130: InChI write Summary: 1164 identical, 0 suffix variance, 17 reasonable
130: 
130: 
130: InChI read Summary: 621 identical, 0 variance, 560 reasonable variance
130: InChI read Summary: 621 identical, 0 variance, 560 reasonable variance
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 1.354s
130: Ran 4 tests in 1.354s
130: 
130: 
130: OK
130: OK
130: ......
130: ......
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.370s
130: Ran 6 tests in 0.370s
130: 
130: 
130: OK
130: OK
130: ...............s........
130: ...............s........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 24 tests in 1.390s
130: Ran 24 tests in 1.390s
130: 
130: 
130: OK (skipped=1)
130: OK (skipped=1)
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.000s
130: Ran 2 tests in 0.000s
130: 
130: 
130: OK
130: OK
130: UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130: UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130:   from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign
130:   from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign
130: ./builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130: ./builddir/build/BUILD/rdkit-Release_2017_09_3/python2/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead.
130:   # This work was funded by Roche and generously donated to the free
130:   # This work was funded by Roche and generously donated to the free
130: .............[10:59:50] WARNING: More than one matching pattern found - picking one
130: .............[10:59:50] WARNING: More than one matching pattern found - picking one
130: [10:59:50] WARNING: More than one matching pattern found - picking one
130: [10:59:50] WARNING: More than one matching pattern found - picking one
130: .........
130: .........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 23 tests in 5.287s
130: Ran 23 tests in 5.287s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.065s
130: Ran 2 tests in 0.065s
130: 
130: 
130: OK
130: OK
130: ..s...
130: ..s...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.810s
130: Ran 6 tests in 0.810s
130: 
130: 
130: OK (skipped=1)
130: OK (skipped=1)
130: ..................
130: ..................
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 18 tests in 0.814s
130: Ran 18 tests in 0.814s
130: 
130: 
130: OK
130: OK
130: ...
130: ...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.090s
130: Ran 3 tests in 0.090s
130: 
130: 
130: OK
130: OK
130: ........
130: ........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.027s
130: Ran 8 tests in 0.027s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.015s
130: Ran 2 tests in 0.015s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.012s
130: Ran 2 tests in 0.012s
130: 
130: 
130: OK
130: OK
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.078s
130: Ran 1 test in 0.078s
130: 
130: 
130: OK
130: OK
130: ........
130: ........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 8 tests in 0.001s
130: Ran 8 tests in 0.001s
130: 
130: 
130: OK
130: OK
130: ...
130: ...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.004s
130: Ran 3 tests in 0.004s
130: 
130: 
130: OK
130: OK
130: ...
130: ...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.001s
130: Ran 3 tests in 0.001s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.003s
130: Ran 4 tests in 0.003s
130: 
130: 
130: OK
130: OK
130: ......
130: ......
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 6 tests in 0.010s
130: Ran 6 tests in 0.010s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.014s
130: Ran 4 tests in 0.014s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 2.923s
130: Ran 4 tests in 2.923s
130: 
130: 
130: OK
130: OK
130: ..........
130: ..........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.042s
130: Ran 10 tests in 0.042s
130: 
130: 
130: OK
130: OK
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: Ran 1 test in 0.000s
130: 
130: 
130: OK
130: OK
130: ..........
130: ..........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.004s
130: Ran 10 tests in 0.004s
130: 
130: 
130: OK
130: OK
130: .....
130: .....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 5 tests in 0.065s
130: Ran 5 tests in 0.065s
130: 
130: 
130: OK
130: OK
130: .....................
130: .....................
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 21 tests in 3.723s
130: Ran 21 tests in 3.723s
130: 
130: 
130: OK
130: OK
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: Ran 1 test in 0.000s
130: 
130: 
130: OK
130: OK
130: ...[11:00:02] 
130: ...[11:00:02] 
130: 
130: 
130: ****
130: ****
130: Pre-condition Violation
130: Pre-condition Violation
130: molecule has no conformers
130: molecule has no conformers
130: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
130: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2017_09_3/python2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
130: Failed Expression: dp_mol->getNumConformers()
130: Failed Expression: dp_mol->getNumConformers()
130: ****
130: ****
130: 
130: 
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.019s
130: Ran 4 tests in 0.019s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 10.310s
130: Ran 2 tests in 10.310s
130: 
130: 
130: OK
130: OK
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.085s
130: Ran 2 tests in 0.085s
130: 
130: 
130: OK
130: OK
130: ...
130: ...
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.009s
130: Ran 3 tests in 0.009s
130: 
130: 
130: OK
130: OK
130: ....
130: ....
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 4 tests in 0.017s
130: Ran 4 tests in 0.017s
130: 
130: 
130: OK
130: OK
130: ..........
130: ..........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.295s
130: Ran 10 tests in 0.295s
130: 
130: 
130: OK
130: OK
130: sss...s..s.sss.
130: sss...s..s.sss.
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 15 tests in 0.246s
130: Ran 15 tests in 0.246s
130: 
130: 
130: OK (skipped=8)
130: OK (skipped=8)
130: Forcing use of Agg renderer
130: Forcing use of Agg renderer
130: /usr/lib64/python2.7/site-packages/matplotlib/__init__.py:1005: UserWarning:  This call to matplotlib.use() has no effect
130: /usr/lib64/python2.7/site-packages/matplotlib/__init__.py:1005: UserWarning:  This call to matplotlib.use() has no effect
130: because the the backend has already been chosen;
130: because the the backend has already been chosen;
130: matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
130: matplotlib.use() must be called *before* pylab, matplotlib.pyplot,
130: or matplotlib.backends is imported for the first time.
130: or matplotlib.backends is imported for the first time.
130: 
130: 
130:   warnings.warn(_use_error_msg)
130:   warnings.warn(_use_error_msg)
130: ..
130: ..
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 2 tests in 0.155s
130: Ran 2 tests in 0.155s
130: 
130: 
130: OK
130: OK
130: s
130: s
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 1 test in 0.000s
130: Ran 1 test in 0.000s
130: 
130: 
130: OK (skipped=1)
130: OK (skipped=1)
130: ..........
130: ..........
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 10 tests in 0.471s
130: Ran 10 tests in 0.471s
130: 
130: 
130: OK
130: OK
130: ..[11:00:16] reaction has no reactants
130: ..[11:00:16] reaction has no reactants
130: [11:00:16] reaction has no products
130: [11:00:16] reaction has no products
130: [11:00:16] initialization failed
130: [11:00:16] initialization failed
130: [11:00:16] reaction has no reactants
130: [11:00:16] reaction has no reactants
130: [11:00:16] reaction has no products
130: [11:00:16] reaction has no products
130: .
130: .
130: ----------------------------------------------------------------------
130: ----------------------------------------------------------------------
130: Ran 3 tests in 0.024s
130: Ran 3 tests in 0.024s
130: 
130: 
130: OK
130: OK
130/130 Test #130: pythonTestDirChem ..................   Passed   64.94 sec
130/130 Test #130: pythonTestDirChem ..................   Passed   64.94 sec
The following tests passed:
The following tests passed:
	testInchi
	testInchi
	testDict
	testDict
	testRDValue
	testRDValue
	testDataStructs
	testDataStructs
	testFPB
	testFPB
	testMultiFPB
	testMultiFPB
	pyBV
	pyBV
	pyDiscreteValueVect
	pyDiscreteValueVect
	pySparseIntVect
	pySparseIntVect
	pyFPB
	pyFPB
	testTransforms
	testTransforms
	testGrid
	testGrid
	testPyGeometry
	testPyGeometry
	testMatrices
	testMatrices
	testAlignment
	testAlignment
	pyAlignment
	pyAlignment
	testOptimizer
	testOptimizer
	testUFFForceField
	testUFFForceField
	testMMFFForceField
	testMMFFForceField
	pyForceFieldConstraints
	pyForceFieldConstraints
	testDistGeom
	testDistGeom
	pyDistGeom
	pyDistGeom
	graphmolTest1
	graphmolTest1
	graphmolcpTest
	graphmolcpTest
	graphmolqueryTest
	graphmolqueryTest
	graphmolMolOpsTest
	graphmolMolOpsTest
	graphmoltestCanon
	graphmoltestCanon
	graphmoltestChirality
	graphmoltestChirality
	graphmoltestPickler
	graphmoltestPickler
	graphmoltestPicklerGlobalSetting
	graphmoltestPicklerGlobalSetting
	graphmolIterTest
	graphmolIterTest
	hanoiTest
	hanoiTest
	graphmolMemTest1
	graphmolMemTest1
	resMolSupplierTest
	resMolSupplierTest
	molBundleTest
	molBundleTest
	testDepictor
	testDepictor
	pyDepictor
	pyDepictor
	smiTest1
	smiTest1
	cxsmilesTest
	cxsmilesTest
	smaTest1
	smaTest1
	fileParsersTest1
	fileParsersTest1
	testMolSupplier
	testMolSupplier
	testMolWriter
	testMolWriter
	testTplParser
	testTplParser
	testMol2ToMol
	testMol2ToMol
	testSequence
	testSequence
	testSubstructMatch
	testSubstructMatch
	testReaction
	testReaction
	testReactionFingerprints
	testReactionFingerprints
	testEnumeration
	testEnumeration
	pyChemReactions
	pyChemReactions
	pyChemReactionEnumerations
	pyChemReactionEnumerations
	pyChemReactionSanitize
	pyChemReactionSanitize
	testChemTransforms
	testChemTransforms
	testSubgraphs1
	testSubgraphs1
	testSubgraphs2
	testSubgraphs2
	filterCatalogTest
	filterCatalogTest
	pyFilterCatalog
	pyFilterCatalog
	testFragCatalog
	testFragCatalog
	pyFragCatalog
	pyFragCatalog
	testDescriptors
	testDescriptors
	testAUTOCORR2D
	testAUTOCORR2D
	testPBF
	testPBF
	testRDF
	testRDF
	testMORSE
	testMORSE
	test3D
	test3D
	testWHIM
	testWHIM
	testGETAWAY
	testGETAWAY
	testAUTOCORR3D
	testAUTOCORR3D
	pyMolDescriptors
	pyMolDescriptors
	pyMolDescriptors3D
	pyMolDescriptors3D
	testFingerprints
	testFingerprints
	testPartialCharges
	testPartialCharges
	pyPartialCharges
	pyPartialCharges
	testMolTransforms
	testMolTransforms
	pyMolTransforms
	pyMolTransforms
	testMMFFForceFieldHelpers
	testMMFFForceFieldHelpers
	testUFFForceFieldHelpers
	testUFFForceFieldHelpers
	testCrystalForceField
	testCrystalForceField
	pyForceFieldHelpers
	pyForceFieldHelpers
	testDistGeomHelpers
	testDistGeomHelpers
	pyDistGeom
	pyDistGeom
	testMolAlign
	testMolAlign
	pyMolAlign
	pyMolAlign
	testFeatures
	testFeatures
	pyChemicalFeatures
	pyChemicalFeatures
	testShapeHelpers
	testShapeHelpers
	pyShapeHelpers
	pyShapeHelpers
	testMolCatalog
	testMolCatalog
	pyMolCatalog
	pyMolCatalog
	moldraw2DTest1
	moldraw2DTest1
	moldraw2DRxnTest1
	moldraw2DRxnTest1
	pyMolDraw2D
	pyMolDraw2D
	testFMCS
	testFMCS
	pyFMCS
	pyFMCS
	FMCStest
	FMCStest
	testMolHash
	testMolHash
	pyMolHash
	pyMolHash
	testMMPA
	testMMPA
	pyMMPA
	pyMMPA
	testStructChecker
	testStructChecker
	pyStructChecker
	pyStructChecker
	testReducedGraphs
	testReducedGraphs
	pyReducedGraphs
	pyReducedGraphs
	trajectoryTest
	trajectoryTest
	substructLibraryTest
	substructLibraryTest
	pySubstructLibrary
	pySubstructLibrary
	testRGroupDecomp
	testRGroupDecomp
	pyRGroupDecomposition
	pyRGroupDecomposition
	testSLNParse
	testSLNParse
	pySLNParse
	pySLNParse
	pyGraphMolWrap
	pyGraphMolWrap
	pyTestConformerWrap
	pyTestConformerWrap
	pyTestTrajectory
	pyTestTrajectory
	pyTestThreads
	pyTestThreads
	testQuery
	testQuery
	testMatCalc
	testMatCalc
	pyMatCalc
	pyMatCalc
	testSimDivPickers
	testSimDivPickers
	pySimDivPickers
	pySimDivPickers
	pyRanker
	pyRanker
	testChemicalFeatures
	testChemicalFeatures
	pyFeatures
	pyFeatures
	pythonTestDbCLI
	pythonTestDbCLI
	pythonTestDirML
	pythonTestDirML
	pythonTestDirDataStructs
	pythonTestDirDataStructs
	pythonTestDirDbase
	pythonTestDirDbase
	pythonTestDirSimDivFilters
	pythonTestDirSimDivFilters
	pythonTestDirVLib
	pythonTestDirVLib
	pythonTestDirChem
	pythonTestDirChem
100% tests passed, 0 tests failed out of 130
100% tests passed, 0 tests failed out of 130
Total Test time (real) = 408.91 sec
Total Test time (real) = 408.91 sec
~/build/BUILD/rdkit-Release_2017_09_3
~/build/BUILD/rdkit-Release_2017_09_3
+ popd
+ popd
+ exit 0
+ exit 0
Processing files: rdkit-2017.09.3-2.el7.centos.x86_64
Processing files: rdkit-2017.09.3-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.K7FnlY
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.K7FnlY
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ export DOCDIR
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ cp -pr ReleaseNotes.md /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-2017.09.3
+ exit 0
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BHGR4x
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.BHGR4x
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ LICENSEDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ export LICENSEDIR
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/licenses/rdkit-2017.09.3
+ exit 0
+ exit 0
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2017.09.3-2.el7.centos rdkit(x86-64) = 2017.09.3-2.el7.centos
Provides: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) rdkit = 2017.09.3-2.el7.centos rdkit(x86-64) = 2017.09.3-2.el7.centos
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_regex-mt.so.1.53.0()(64bit) libboost_serialization-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_regex-mt.so.1.53.0()(64bit) libboost_serialization-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2017.09.3-2.el7.centos.x86_64
Processing files: rdkit-devel-2017.09.3-2.el7.centos.x86_64
Provides: rdkit-devel = 2017.09.3-2.el7.centos rdkit-devel(x86-64) = 2017.09.3-2.el7.centos
Provides: rdkit-devel = 2017.09.3-2.el7.centos rdkit-devel(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitEigenSolvers.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitOptimizer.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit)
Processing files: rdkit-doc-2017.09.3-2.el7.centos.noarch
Processing files: rdkit-doc-2017.09.3-2.el7.centos.noarch
Provides: rdkit-doc = 2017.09.3-2.el7.centos
Provides: rdkit-doc = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Processing files: python2-rdkit-2017.09.3-2.el7.centos.x86_64
Processing files: python2-rdkit-2017.09.3-2.el7.centos.x86_64
Provides: python-rdkit = 2017.09.3-2.el7.centos python2-rdkit = 2017.09.3-2.el7.centos python2-rdkit(x86-64) = 2017.09.3-2.el7.centos
Provides: python-rdkit = 2017.09.3-2.el7.centos python2-rdkit = 2017.09.3-2.el7.centos python2-rdkit(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Requires: libRDKitAlignment.so.1()(64bit) libRDKitCatalogs.so.1()(64bit) libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitChemicalFeatures.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitDistGeomHelpers.so.1()(64bit) libRDKitDistGeometry.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFilterCatalog.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitForceField.so.1()(64bit) libRDKitForceFieldHelpers.so.1()(64bit) libRDKitFragCatalog.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitInfoTheory.so.1()(64bit) libRDKitMMPA.so.1()(64bit) libRDKitMolAlign.so.1()(64bit) libRDKitMolCatalog.so.1()(64bit) libRDKitMolChemicalFeatures.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitMolTransforms.so.1()(64bit) libRDKitPartialCharges.so.1()(64bit) libRDKitRDBoost.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDGeometryLib.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitRGroupDecomposition.so.1()(64bit) libRDKitReducedGraphs.so.1()(64bit) libRDKitSLNParse.so.1()(64bit) libRDKitShapeHelpers.so.1()(64bit) libRDKitSimDivPickers.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitStructChecker.so.1()(64bit) libRDKitSubgraphs.so.1()(64bit) libRDKitSubstructLibrary.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libRDKitTrajectory.so.1()(64bit) libRDKithc.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_system-mt.so.1.53.0()(64bit) libboost_thread-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Obsoletes: python-rdkit < 2017.09.3-2.el7.centos
Obsoletes: python-rdkit < 2017.09.3-2.el7.centos
Processing files: rdkit-postgresql-2017.09.3-2.el7.centos.x86_64
Processing files: rdkit-postgresql-2017.09.3-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dH3Cpr
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.dH3Cpr
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ export DOCDIR
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ cp -pr python2/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ cp -pr python2/Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2017.09.3
+ exit 0
+ exit 0
Provides: librdkit.so()(64bit) rdkit-postgresql = 2017.09.3-2.el7.centos rdkit-postgresql(x86-64) = 2017.09.3-2.el7.centos
Provides: librdkit.so()(64bit) rdkit-postgresql = 2017.09.3-2.el7.centos rdkit-postgresql(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libboost_system-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Requires: libRDKitChemReactions.so.1()(64bit) libRDKitChemTransforms.so.1()(64bit) libRDKitDataStructs.so.1()(64bit) libRDKitDepictor.so.1()(64bit) libRDKitDescriptors.so.1()(64bit) libRDKitFMCS.so.1()(64bit) libRDKitFileParsers.so.1()(64bit) libRDKitFingerprints.so.1()(64bit) libRDKitGraphMol.so.1()(64bit) libRDKitMolDraw2D.so.1()(64bit) libRDKitMolHash.so.1()(64bit) libRDKitRDGeneral.so.1()(64bit) libRDKitRDInchiLib.so.1()(64bit) libRDKitSmilesParse.so.1()(64bit) libRDKitSubstructMatch.so.1()(64bit) libboost_system-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64
Processing files: rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64
Provides: rdkit-debuginfo = 2017.09.3-2.el7.centos rdkit-debuginfo(x86-64) = 2017.09.3-2.el7.centos
Provides: rdkit-debuginfo = 2017.09.3-2.el7.centos rdkit-debuginfo(x86-64) = 2017.09.3-2.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
Wrote: /builddir/build/RPMS/rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2017.09.3-2.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2017.09.3-2.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/python2-rdkit-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2017.09.3-2.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3JVsG0
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.3JVsG0
+ umask 022
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2017_09_3
+ cd rdkit-Release_2017_09_3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2017.09.3-2.el7.centos.x86_64
+ exit 0
+ exit 0
Child return code was: 0
Child return code was: 0