Warning: Permanently added '54.226.85.91' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11089382-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.10 PID: 12244 Logging PID: 12246 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11089382, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '51a8078d7bb9717224da26615833ce7fd739017d', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'gromacs', 'package_version': '2026.3-1', 'project_dirname': 'mpich-rdep-check', 'project_name': 'mpich-rdep-check', 'project_owner': 'growl', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/growl/mpich-rdep-check/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'growl/mpich-rdep-check--growl', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 1, 'submitter': 'growl', 'tags': [], 'task_id': '11089382-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/growl/mpich-rdep-check/gromacs', '/var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs'... Running: git checkout 51a8078d7bb9717224da26615833ce7fd739017d -- cmd: ['git', 'checkout', '51a8078d7bb9717224da26615833ce7fd739017d', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs rc: 0 stdout: stderr: Note: switching to '51a8078d7bb9717224da26615833ce7fd739017d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 51a8078 automatic import of gromacs Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading gromacs-2026.3.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o gromacs-2026.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/gromacs-2026.3.tar.gz/md5/7987af0c6ab939ab6e639f32d0dd260f/gromacs-2026.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 43.78M 100 43.78M 0 0 20.60M 0 00:02 00:02 20.76M INFO: Reading stdout from command: md5sum gromacs-2026.3.tar.gz INFO: Downloading manual-2026.3.pdf INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o manual-2026.3.pdf --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/manual-2026.3.pdf/md5/7cbfb3b6aad1e8c09bd2fa35da1c8ee4/manual-2026.3.pdf % Total % Received % Xferd Average Speed Time Time Time Current tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 13.27M 100 13.27M 0 0 16.54M 0 0 INFO: Reading stdout from command: md5sum manual-2026.3.pdf INFO: Downloading regressiontests-2026.3.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o regressiontests-2026.3.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/growl/mpich-rdep-check/gromacs/regressiontests-2026.3.tar.gz/md5/2efca4799115329160ccaf84ce442baf/regressiontests-2026.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15.81M 100 15.81M 0 0 16.08M 0 0 INFO: Reading stdout from command: md5sum regressiontests-2026.3.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791377181.977405 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs/gromacs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791377181.977405 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs/gromacs.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791377181.977405/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-0c1b076c-031b-4fea-92f4-adc02fdfb238 INFO: Checking that 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 image matches host's architecture INFO: Copy content of container 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791377181.977405/root INFO: mounting 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 with podman image mount INFO: image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 as /var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged INFO: umounting image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 (/var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged) with podman image umount INFO: Removing image mock-bootstrap-0c1b076c-031b-4fea-92f4-adc02fdfb238 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791377181.977405/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 322.4 KiB/s | 147.0 KiB | 00m00s fedora 100% | 20.6 MiB/s | 21.0 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.20-1.fc46 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-24.fc45 fedora 171.2 KiB coreutils aarch64 0:9.12-1.fc46 fedora 8.6 MiB cpio aarch64 0:2.15-10.fc45 fedora 1.1 MiB diffutils aarch64 0:3.12-6.fc45 fedora 1.6 MiB fedora-release-common noarch 0:46-0.1 fedora 4.6 KiB findutils aarch64 1:4.11.0-2.fc45 fedora 2.0 MiB gawk aarch64 0:5.4.1-1.fc45 fedora 2.9 MiB glibc-minimal-langpack aarch64 0:2.44.9000-4.fc46 fedora 0.0 B grep aarch64 0:3.12-4.fc45 fedora 1.0 MiB gzip aarch64 0:1.14-4.fc45 fedora 437.6 KiB info aarch64 0:7.3-3.fc45 fedora 424.4 KiB patch aarch64 0:2.8-6.fc46 fedora 262.4 KiB redhat-rpm-config noarch 0:345-4.fc46 fedora 184.2 KiB rpm-build aarch64 0:6.1.0-1.fc46 fedora 616.1 KiB sed aarch64 0:4.10-2.fc45 fedora 878.4 KiB shadow-utils aarch64 2:4.20.0-1.fc45 fedora 4.4 MiB tar aarch64 2:1.35-9.fc45 fedora 3.0 MiB unzip aarch64 0:6.0-71.fc45 fedora 469.9 KiB util-linux aarch64 0:2.42.4-2.fc46 fedora 6.9 MiB which aarch64 0:2.25-2.fc45 fedora 123.6 KiB xz aarch64 1:5.8.4-1.fc46 fedora 1.5 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-3.fc45 fedora 3.5 KiB add-determinism aarch64 0:0.7.3-3.fc45 fedora 1.9 MiB alternatives aarch64 0:1.33-6.fc45 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-22.fc45 fedora 35.7 KiB audit-libs aarch64 0:4.2.1-2.fc45 fedora 486.7 KiB binutils aarch64 0:2.47.50-12.fc46 fedora 27.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45 fedora 1.2 KiB bzip2-libs aarch64 0:1.0.8-24.fc45 fedora 72.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc46 fedora 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-5.fc45 fedora 524.0 B coreutils-common aarch64 0:9.12-1.fc46 fedora 11.5 MiB crypto-policies noarch 0:20260713-2.gitc42da77.fc45 fedora 134.3 KiB curl aarch64 0:8.23.0~rc2-1.fc46 fedora 525.6 KiB cyrus-sasl-lib aarch64 0:2.1.28-37.fc45 fedora 2.4 MiB debugedit aarch64 0:5.3-3.fc45 fedora 320.9 KiB dwz aarch64 0:0.17-3.fc45 fedora 322.7 KiB ed aarch64 0:1.22.6-1.fc46 fedora 158.9 KiB efi-srpm-macros noarch 0:6-9.fc45 fedora 40.3 KiB elfutils aarch64 0:0.196-1.fc46 fedora 3.8 MiB elfutils-debuginfod-client aarch64 0:0.196-1.fc46 fedora 144.0 KiB elfutils-libelf aarch64 0:0.196-1.fc46 fedora 1.5 MiB elfutils-libs aarch64 0:0.196-1.fc46 fedora 746.6 KiB erlang-srpm-macros noarch 0:0.4.0-1.fc46 fedora 2.0 KiB fedora-gpg-keys noarch 0:46-0.3 fedora 130.3 KiB fedora-release noarch 0:46-0.1 fedora 0.0 B fedora-release-identity-basic noarch 0:46-0.1 fedora 664.0 B fedora-repos noarch 0:46-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 0:46-0.3 fedora 2.2 KiB file aarch64 0:5.48-3.fc46 fedora 141.9 KiB file-libs aarch64 0:5.48-3.fc46 fedora 12.4 MiB filesystem aarch64 0:3.18-59.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-59.fc45 fedora 38.2 KiB fips-provider aarch64 0:1.5.3-1.fc46 fedora 3.8 MiB fonts-srpm-macros noarch 1:5.0.0-4.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-5.fc45 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-17.fc45 fedora 144.0 B gap-srpm-macros noarch 0:2-3.fc45 fedora 2.1 KiB gdb-minimal aarch64 0:17.2-6.fc46 fedora 13.5 MiB gdbm-libs aarch64 1:1.26-1.fc46 fedora 234.3 KiB ghc-srpm-macros noarch 0:1.10-2.fc45 fedora 792.0 B glibc aarch64 0:2.44.9000-4.fc46 fedora 6.6 MiB glibc-common aarch64 0:2.44.9000-4.fc46 fedora 1.3 MiB glibc-gconv-extra aarch64 0:2.44.9000-4.fc46 fedora 18.6 MiB gmp aarch64 1:6.3.0-6.fc45 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-3.fc45 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-2.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-4.fc45 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-18.fc45 fedora 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-18.fc45 fedora 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-18.fc45 fedora 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-18.fc45 fedora 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-18.fc45 fedora 233.2 KiB gnupg2-verify aarch64 0:2.4.9-18.fc45 fedora 364.3 KiB gnutls aarch64 0:3.8.13-5.fc46 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-3.fc45 fedora 61.9 KiB gpgverify noarch 0:2.2-5.fc45 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-12.fc45 fedora 92.6 KiB jansson aarch64 0:2.14-5.fc45 fedora 93.0 KiB java-srpm-macros noarch 0:1-9.fc45 fedora 870.0 B json-c aarch64 0:0.18-9.fc45 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-30.fc45 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-8.fc45 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-9.fc45 fedora 2.5 MiB libacl aarch64 0:2.4.0-2.fc45 fedora 67.9 KiB libarchive aarch64 0:3.8.9-2.fc46 fedora 975.7 KiB libassuan aarch64 0:2.5.7-6.fc45 fedora 215.9 KiB libattr aarch64 0:2.6.0-2.fc45 fedora 68.4 KiB libblkid aarch64 0:2.42.4-2.fc46 fedora 290.3 KiB libbrotli aarch64 0:1.2.0-6.fc45 fedora 909.2 KiB libcap aarch64 0:2.78-2.fc45 fedora 508.4 KiB libcap-ng aarch64 0:0.9.6-1.fc46 fedora 160.9 KiB libcbor aarch64 0:0.14.0-3.fc45 fedora 139.6 KiB libcom_err aarch64 0:1.47.4-2.fc45 fedora 111.1 KiB libcurl aarch64 0:8.23.0~rc2-1.fc46 fedora 1.0 MiB libeconf aarch64 0:0.7.9-4.fc45 fedora 80.8 KiB libevent aarch64 0:2.1.13-1.fc46 fedora 1.1 MiB libfdisk aarch64 0:2.42.4-2.fc46 fedora 418.8 KiB libffi aarch64 0:3.8.0-1.fc46 fedora 159.6 KiB libfido2 aarch64 0:1.17.0-6.fc46 fedora 280.7 KiB libfsverity aarch64 0:1.7-4.fc45 fedora 68.4 KiB libgcc aarch64 0:16.2.1-2.fc46.1 fedora 222.3 KiB libgcrypt aarch64 0:1.12.4-1.fc46 fedora 1.2 MiB libgomp aarch64 0:16.2.1-2.fc46.1 fedora 592.9 KiB libgpg-error aarch64 0:1.61-2.fc45 fedora 997.9 KiB libidn2 aarch64 0:2.3.8-4.fc45 fedora 560.5 KiB libksba aarch64 0:1.8.1-1.fc46 fedora 407.8 KiB liblastlog2 aarch64 0:2.42.4-2.fc46 fedora 137.8 KiB libmount aarch64 0:2.42.4-2.fc46 fedora 420.4 KiB libnghttp2 aarch64 0:1.69.0-6.fc46 fedora 197.9 KiB libnghttp3 aarch64 0:1.18.0-1.fc45 fedora 206.8 KiB libpfm aarch64 0:4.13.0-23.fc45 fedora 252.0 KiB libpkgconf aarch64 0:2.5.1-2.fc45 fedora 134.0 KiB libpsl aarch64 0:0.23.3-1.fc46 fedora 132.5 KiB libselinux aarch64 0:3.11-5.fc46 fedora 265.2 KiB libselinux-utils aarch64 0:3.11-5.fc46 fedora 1.3 MiB libsemanage aarch64 0:3.11-4.fc46 fedora 360.3 KiB libsepol aarch64 0:3.11-2.fc45 fedora 809.9 KiB libsmartcols aarch64 0:2.42.4-2.fc46 fedora 224.4 KiB libssh aarch64 0:0.12.2-1.fc45 fedora 721.4 KiB libssh-config noarch 0:0.12.2-1.fc45 fedora 277.0 B libstdc++ aarch64 0:16.2.1-2.fc46.1 fedora 3.0 MiB libtasn1 aarch64 0:4.21.0-2.fc45 fedora 220.7 KiB libtool-ltdl aarch64 0:2.6.2-1.fc46 fedora 93.9 KiB libunistring aarch64 0:1.1-12.fc45 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-2.fc45 fedora 179.7 KiB libuuid aarch64 0:2.42.4-2.fc46 fedora 69.3 KiB libverto aarch64 0:0.3.2-13.fc45 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-4.fc45 fedora 273.2 KiB libxml2 aarch64 0:2.15.4-1.fc46 fedora 1.7 MiB libzstd aarch64 0:1.5.7-6.fc45 fedora 860.3 KiB linkdupes aarch64 0:0.7.3-3.fc45 fedora 711.0 KiB lua-libs aarch64 0:5.5.1-2.fc46 fedora 330.0 KiB lua-srpm-macros noarch 0:1-18.fc45 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-5.fc45 fedora 197.3 KiB meson-srpm-macros noarch 0:1.12.1-2.fc46 fedora 1.7 KiB mpfr aarch64 0:4.2.2-4.fc45 fedora 755.4 KiB ncurses-base noarch 0:6.6-3.fc45 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-3.fc45 fedora 1.2 MiB nettle aarch64 0:4.0-5.fc45 fedora 836.7 KiB ngtcp2 aarch64 0:1.22.1-3.fc45 fedora 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-3.fc45 fedora 67.5 KiB npth aarch64 0:1.8-5.fc45 fedora 93.4 KiB ocaml-srpm-macros noarch 0:11-4.fc45 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-23.fc46 fedora 124.0 B openldap aarch64 0:2.6.15-1.fc46 fedora 765.6 KiB openssl-libs aarch64 1:4.0.3-1.fc46 fedora 5.8 MiB p11-kit aarch64 0:0.26.5-1.fc45 fedora 2.8 MiB p11-kit-trust aarch64 0:0.26.5-1.fc45 fedora 530.1 KiB package-notes-srpm-macros noarch 0:0.20-2.fc45 fedora 1.6 KiB pam-libs aarch64 0:1.7.2-4.fc45 fedora 222.7 KiB pcre2 aarch64 0:10.47-1.fc45.2 fedora 714.4 KiB pcre2-syntax noarch 0:10.47-1.fc45.2 fedora 281.9 KiB perl-srpm-macros noarch 0:1-65.fc45 fedora 861.0 B pkgconf aarch64 0:2.5.1-2.fc45 fedora 116.8 KiB pkgconf-m4 noarch 0:2.5.1-2.fc45 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-2.fc45 fedora 990.0 B policycoreutils aarch64 0:3.11-2.fc45 fedora 1.5 MiB popt aarch64 0:1.19-11.fc45 fedora 144.7 KiB publicsuffix-list-dafsa noarch 0:20260624-2.fc45 fedora 71.3 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc45 fedora 3.4 KiB python-srpm-macros noarch 0:3.15-2.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-3.fc45 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc46 fedora 472.0 B readline aarch64 0:8.3-7.fc46 fedora 563.6 KiB redhat-systemd-presets noarch 0:102-3.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-3.fc45 fedora 16.9 KiB rpm aarch64 0:6.1.0-1.fc46 fedora 3.3 MiB rpm-build-libs aarch64 0:6.1.0-1.fc46 fedora 264.0 KiB rpm-libs aarch64 0:6.1.0-1.fc46 fedora 1.1 MiB rpm-plugin-selinux aarch64 0:6.1.0-1.fc46 fedora 67.9 KiB rpm-sequoia aarch64 0:1.10.3-1.fc46 fedora 2.3 MiB rpm-sign-libs aarch64 0:6.1.0-1.fc46 fedora 67.7 KiB rust-srpm-macros noarch 0:28.5-2.fc45 fedora 5.5 KiB selinux-policy noarch 0:45.21-1.fc46 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.21-1.fc46 fedora 19.0 MiB setup noarch 0:2.15.1-2.fc45 fedora 725.6 KiB sqlite-libs aarch64 0:3.53.4-1.fc45 fedora 1.6 MiB systemd-libs aarch64 0:262-3.fc46 fedora 2.8 MiB systemd-standalone-sysusers aarch64 0:262-3.fc46 fedora 979.3 KiB tpm2-tss aarch64 0:4.2.0-1.fc45 fedora 2.2 MiB tree-sitter-srpm-macros noarch 0:0.4.6-2.fc45 fedora 8.6 KiB util-linux-core aarch64 0:2.42.4-2.fc46 fedora 2.5 MiB xxhash-libs aarch64 0:0.8.4-1.fc46 fedora 85.8 KiB xz-libs aarch64 1:5.8.4-1.fc46 fedora 265.5 KiB zig-srpm-macros noarch 0:1-9.fc45 fedora 1.3 KiB zip aarch64 0:3.0-46.fc45 fedora 762.2 KiB zlib-ng-compat aarch64 0:2.3.3-6.fc45 fedora 133.4 KiB zstd aarch64 0:1.5.7-6.fc45 fedora 562.3 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 190 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 253 MiB extra will be used (install 253 MiB, remove 0 B). [ 1/190] bzip2-0:1.0.8-24.fc45.aarch64 100% | 12.7 MiB/s | 52.2 KiB | 00m00s [ 2/190] coreutils-0:9.12-1.fc46.aarch 100% | 88.7 MiB/s | 1.2 MiB | 00m00s [ 3/190] cpio-0:2.15-10.fc45.aarch64 100% | 23.6 MiB/s | 289.7 KiB | 00m00s [ 4/190] bash-0:5.3.20-1.fc46.aarch64 100% | 102.3 MiB/s | 1.8 MiB | 00m00s [ 5/190] diffutils-0:3.12-6.fc45.aarch 100% | 76.6 MiB/s | 392.3 KiB | 00m00s [ 6/190] fedora-release-common-0:46-0. 100% | 4.4 MiB/s | 18.2 KiB | 00m00s [ 7/190] findutils-1:4.11.0-2.fc45.aar 100% | 185.5 MiB/s | 569.9 KiB | 00m00s [ 8/190] gawk-0:5.4.1-1.fc45.aarch64 100% | 190.0 MiB/s | 1.1 MiB | 00m00s [ 9/190] glibc-minimal-langpack-0:2.44 100% | 22.3 MiB/s | 137.1 KiB | 00m00s [ 10/190] grep-0:3.12-4.fc45.aarch64 100% | 57.8 MiB/s | 296.0 KiB | 00m00s [ 11/190] gzip-0:1.14-4.fc45.aarch64 100% | 84.8 MiB/s | 173.6 KiB | 00m00s [ 12/190] info-0:7.3-3.fc45.aarch64 100% | 35.9 MiB/s | 183.9 KiB | 00m00s [ 13/190] patch-0:2.8-6.fc46.aarch64 100% | 27.1 MiB/s | 110.8 KiB | 00m00s [ 14/190] redhat-rpm-config-0:345-4.fc4 100% | 19.1 MiB/s | 78.1 KiB | 00m00s [ 15/190] rpm-build-0:6.1.0-1.fc46.aarc 100% | 74.6 MiB/s | 152.9 KiB | 00m00s [ 16/190] sed-0:4.10-2.fc45.aarch64 100% | 103.9 MiB/s | 319.1 KiB | 00m00s [ 17/190] shadow-utils-2:4.20.0-1.fc45. 100% | 176.3 MiB/s | 1.4 MiB | 00m00s [ 18/190] tar-2:1.35-9.fc45.aarch64 100% | 69.5 MiB/s | 854.2 KiB | 00m00s [ 19/190] unzip-0:6.0-71.fc45.aarch64 100% | 17.7 MiB/s | 199.1 KiB | 00m00s [ 20/190] util-linux-0:2.42.4-2.fc46.aa 100% | 113.1 MiB/s | 1.2 MiB | 00m00s [ 21/190] which-0:2.25-2.fc45.aarch64 100% | 6.8 MiB/s | 41.7 KiB | 00m00s [ 22/190] xz-1:5.8.4-1.fc46.aarch64 100% | 91.2 MiB/s | 653.9 KiB | 00m00s [ 23/190] filesystem-0:3.18-59.fc45.aar 100% | 227.0 MiB/s | 1.8 MiB | 00m00s [ 24/190] glibc-0:2.44.9000-4.fc46.aarc 100% | 147.7 MiB/s | 2.1 MiB | 00m00s [ 25/190] ncurses-libs-0:6.6-3.fc45.aar 100% | 24.4 MiB/s | 324.6 KiB | 00m00s [ 26/190] bzip2-libs-0:1.0.8-24.fc45.aa 100% | 5.7 MiB/s | 41.2 KiB | 00m00s [ 27/190] gmp-1:6.3.0-6.fc45.aarch64 100% | 33.0 MiB/s | 270.7 KiB | 00m00s [ 28/190] coreutils-common-0:9.12-1.fc4 100% | 185.8 MiB/s | 2.2 MiB | 00m00s [ 29/190] libacl-0:2.4.0-2.fc45.aarch64 100% | 2.4 MiB/s | 26.7 KiB | 00m00s [ 30/190] libattr-0:2.6.0-2.fc45.aarch6 100% | 5.8 MiB/s | 17.8 KiB | 00m00s [ 31/190] libcap-0:2.78-2.fc45.aarch64 100% | 28.8 MiB/s | 88.4 KiB | 00m00s [ 32/190] libselinux-0:3.11-5.fc46.aarc 100% | 24.4 MiB/s | 100.0 KiB | 00m00s [ 33/190] openssl-libs-1:4.0.3-1.fc46.a 100% | 213.9 MiB/s | 2.1 MiB | 00m00s [ 34/190] systemd-libs-0:262-3.fc46.aar 100% | 95.5 MiB/s | 880.4 KiB | 00m00s [ 35/190] fedora-repos-0:46-0.3.noarch 100% | 1.2 MiB/s | 9.6 KiB | 00m00s [ 36/190] redhat-systemd-presets-0:102- 100% | 2.8 MiB/s | 8.5 KiB | 00m00s [ 37/190] mpfr-0:4.2.2-4.fc45.aarch64 100% | 104.0 MiB/s | 319.4 KiB | 00m00s [ 38/190] readline-0:8.3-7.fc46.aarch64 100% | 53.9 MiB/s | 220.9 KiB | 00m00s [ 39/190] glibc-common-0:2.44.9000-4.fc 100% | 81.2 MiB/s | 415.5 KiB | 00m00s [ 40/190] pcre2-0:10.47-1.fc45.2.aarch6 100% | 81.5 MiB/s | 250.2 KiB | 00m00s [ 41/190] ed-0:1.22.6-1.fc46.aarch64 100% | 27.3 MiB/s | 84.0 KiB | 00m00s [ 42/190] R-srpm-macros-0:1.3.7-3.fc45. 100% | 5.4 MiB/s | 11.1 KiB | 00m00s [ 43/190] ansible-srpm-macros-0:1-22.fc 100% | 9.7 MiB/s | 19.8 KiB | 00m00s [ 44/190] build-reproducibility-srpm-ma 100% | 3.5 MiB/s | 10.8 KiB | 00m00s [ 45/190] cmake-srpm-macros-0:4.3.0-5.f 100% | 5.0 MiB/s | 10.3 KiB | 00m00s [ 46/190] dwz-0:0.17-3.fc45.aarch64 100% | 43.3 MiB/s | 132.9 KiB | 00m00s [ 47/190] efi-srpm-macros-0:6-9.fc45.no 100% | 7.0 MiB/s | 21.4 KiB | 00m00s [ 48/190] erlang-srpm-macros-0:0.4.0-1. 100% | 3.2 MiB/s | 10.0 KiB | 00m00s [ 49/190] file-0:5.48-3.fc46.aarch64 100% | 24.8 MiB/s | 50.7 KiB | 00m00s [ 50/190] filesystem-srpm-macros-0:3.18 100% | 8.6 MiB/s | 26.4 KiB | 00m00s [ 51/190] fonts-srpm-macros-1:5.0.0-4.f 100% | 8.8 MiB/s | 27.2 KiB | 00m00s [ 52/190] forge-srpm-macros-0:0.4.0-5.f 100% | 6.4 MiB/s | 19.7 KiB | 00m00s [ 53/190] fpc-srpm-macros-0:1.3-17.fc45 100% | 2.5 MiB/s | 7.8 KiB | 00m00s [ 54/190] gap-srpm-macros-0:2-3.fc45.no 100% | 3.0 MiB/s | 9.3 KiB | 00m00s [ 55/190] ghc-srpm-macros-0:1.10-2.fc45 100% | 2.8 MiB/s | 8.5 KiB | 00m00s [ 56/190] gnat-srpm-macros-0:7-3.fc45.n 100% | 4.2 MiB/s | 8.6 KiB | 00m00s [ 57/190] gnome-srpm-macros-0:1.0-2.fc4 100% | 4.3 MiB/s | 8.8 KiB | 00m00s [ 58/190] go-srpm-macros-0:3.8.0-3.fc45 100% | 13.6 MiB/s | 27.8 KiB | 00m00s [ 59/190] java-srpm-macros-0:1-9.fc45.n 100% | 2.7 MiB/s | 8.3 KiB | 00m00s [ 60/190] kernel-srpm-macros-0:1.0-30.f 100% | 4.0 MiB/s | 8.3 KiB | 00m00s [ 61/190] lua-srpm-macros-0:1-18.fc45.n 100% | 2.8 MiB/s | 8.7 KiB | 00m00s [ 62/190] meson-srpm-macros-0:1.12.1-2. 100% | 3.8 MiB/s | 11.8 KiB | 00m00s [ 63/190] ocaml-srpm-macros-0:11-4.fc45 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 64/190] openblas-srpm-macros-0:2-23.f 100% | 2.5 MiB/s | 7.5 KiB | 00m00s [ 65/190] package-notes-srpm-macros-0:0 100% | 5.1 MiB/s | 10.5 KiB | 00m00s [ 66/190] perl-srpm-macros-0:1-65.fc45. 100% | 4.1 MiB/s | 8.4 KiB | 00m00s [ 67/190] pyproject-srpm-macros-0:1.23. 100% | 7.6 MiB/s | 15.6 KiB | 00m00s [ 68/190] python-srpm-macros-0:3.15-2.f 100% | 7.8 MiB/s | 23.9 KiB | 00m00s [ 69/190] qt5-srpm-macros-0:5.15.18-3.f 100% | 2.6 MiB/s | 8.1 KiB | 00m00s [ 70/190] qt6-srpm-macros-0:6.11.2-1.fc 100% | 4.4 MiB/s | 9.1 KiB | 00m00s [ 71/190] rpm-0:6.1.0-1.fc46.aarch64 100% | 186.6 MiB/s | 573.1 KiB | 00m00s [ 72/190] rust-srpm-macros-0:28.5-2.fc4 100% | 3.7 MiB/s | 11.4 KiB | 00m00s [ 73/190] tree-sitter-srpm-macros-0:0.4 100% | 4.6 MiB/s | 14.0 KiB | 00m00s [ 74/190] zig-srpm-macros-0:1-9.fc45.no 100% | 4.3 MiB/s | 8.8 KiB | 00m00s [ 75/190] zip-0:3.0-46.fc45.aarch64 100% | 86.6 MiB/s | 265.9 KiB | 00m00s [ 76/190] debugedit-0:5.3-3.fc45.aarch6 100% | 10.6 MiB/s | 86.7 KiB | 00m00s [ 77/190] elfutils-0:0.196-1.fc46.aarch 100% | 69.7 MiB/s | 642.3 KiB | 00m00s [ 78/190] binutils-0:2.47.50-12.fc46.aa 100% | 254.1 MiB/s | 5.3 MiB | 00m00s [ 79/190] elfutils-libelf-0:0.196-1.fc4 100% | 20.9 MiB/s | 235.6 KiB | 00m00s [ 80/190] libarchive-0:3.8.9-2.fc46.aar 100% | 37.1 MiB/s | 418.3 KiB | 00m00s [ 81/190] libgcc-0:16.2.1-2.fc46.1.aarc 100% | 57.7 MiB/s | 118.1 KiB | 00m00s [ 82/190] libstdc++-0:16.2.1-2.fc46.1.a 100% | 224.1 MiB/s | 918.1 KiB | 00m00s [ 83/190] pkgconf-pkg-config-0:2.5.1-2. 100% | 2.3 MiB/s | 9.5 KiB | 00m00s [ 84/190] popt-0:1.19-11.fc45.aarch64 100% | 21.2 MiB/s | 65.1 KiB | 00m00s [ 85/190] rpm-build-libs-0:6.1.0-1.fc46 100% | 58.9 MiB/s | 120.6 KiB | 00m00s [ 86/190] rpm-libs-0:6.1.0-1.fc46.aarch 100% | 139.8 MiB/s | 429.5 KiB | 00m00s [ 87/190] zstd-0:1.5.7-6.fc45.aarch64 100% | 44.7 MiB/s | 183.0 KiB | 00m00s [ 88/190] audit-libs-0:4.2.1-2.fc45.aar 100% | 69.3 MiB/s | 142.0 KiB | 00m00s [ 89/190] libeconf-0:0.7.9-4.fc45.aarch 100% | 17.0 MiB/s | 34.8 KiB | 00m00s [ 90/190] libsemanage-0:3.11-4.fc46.aar 100% | 59.8 MiB/s | 122.4 KiB | 00m00s [ 91/190] libxcrypt-0:4.5.2-4.fc45.aarc 100% | 61.1 MiB/s | 125.2 KiB | 00m00s [ 92/190] pam-libs-0:1.7.2-4.fc45.aarch 100% | 27.7 MiB/s | 56.8 KiB | 00m00s [ 93/190] setup-0:2.15.1-2.fc45.noarch 100% | 51.3 MiB/s | 157.6 KiB | 00m00s [ 94/190] libblkid-0:2.42.4-2.fc46.aarc 100% | 41.2 MiB/s | 126.5 KiB | 00m00s [ 95/190] libcap-ng-0:0.9.6-1.fc46.aarc 100% | 8.6 MiB/s | 35.1 KiB | 00m00s [ 96/190] libfdisk-0:2.42.4-2.fc46.aarc 100% | 50.8 MiB/s | 156.2 KiB | 00m00s [ 97/190] liblastlog2-0:2.42.4-2.fc46.a 100% | 12.2 MiB/s | 24.9 KiB | 00m00s [ 98/190] libmount-0:2.42.4-2.fc46.aarc 100% | 81.5 MiB/s | 166.9 KiB | 00m00s [ 99/190] libsmartcols-0:2.42.4-2.fc46. 100% | 41.5 MiB/s | 85.0 KiB | 00m00s [100/190] libuuid-0:2.42.4-2.fc46.aarch 100% | 8.8 MiB/s | 27.0 KiB | 00m00s [101/190] util-linux-core-0:2.42.4-2.fc 100% | 185.1 MiB/s | 568.7 KiB | 00m00s [102/190] zlib-ng-compat-0:2.3.3-6.fc45 100% | 23.5 MiB/s | 72.1 KiB | 00m00s [103/190] xz-libs-1:5.8.4-1.fc46.aarch6 100% | 36.3 MiB/s | 111.4 KiB | 00m00s [104/190] glibc-gconv-extra-0:2.44.9000 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file-libs-0:5.48-3.fc46.aarch 100% | 142.9 MiB/s | 878.1 KiB | 00m00s [118/190] curl-0:8.23.0~rc2-1.fc46.aarc 100% | 58.3 MiB/s | 238.9 KiB | 00m00s [119/190] alternatives-0:1.33-6.fc45.aa 100% | 12.6 MiB/s | 38.7 KiB | 00m00s [120/190] elfutils-debuginfod-client-0: 100% | 22.6 MiB/s | 46.4 KiB | 00m00s [121/190] jansson-0:2.14-5.fc45.aarch64 100% | 22.7 MiB/s | 46.4 KiB | 00m00s [122/190] libzstd-0:1.5.7-6.fc45.aarch6 100% | 107.3 MiB/s | 329.8 KiB | 00m00s [123/190] elfutils-libs-0:0.196-1.fc46. 100% | 86.5 MiB/s | 265.8 KiB | 00m00s [124/190] json-c-0:0.18-9.fc45.aarch64 100% | 14.7 MiB/s | 45.1 KiB | 00m00s [125/190] libpfm-0:4.13.0-23.fc45.aarch 100% | 25.9 MiB/s | 53.1 KiB | 00m00s [126/190] libxml2-0:2.15.4-1.fc46.aarch 100% | 155.6 MiB/s | 637.2 KiB | 00m00s [127/190] lz4-libs-0:1.10.0-5.fc45.aarc 100% | 15.7 MiB/s | 80.2 KiB | 00m00s [128/190] pkgconf-0:2.5.1-2.fc45.aarch6 100% | 9.5 MiB/s | 48.4 KiB | 00m00s [129/190] pkgconf-m4-0:2.5.1-2.fc45.noa 100% | 6.7 MiB/s | 13.8 KiB 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35.8 MiB/s | 73.4 KiB | 00m00s [143/190] gpgverify-0:2.2-5.fc45.noarch 100% | 5.5 MiB/s | 11.3 KiB | 00m00s [144/190] gnupg2-dirmngr-0:2.4.9-18.fc4 100% | 85.6 MiB/s | 263.1 KiB | 00m00s [145/190] gnupg2-gpg-agent-0:2.4.9-18.f 100% | 86.6 MiB/s | 266.0 KiB | 00m00s [146/190] gnupg2-gpgconf-0:2.4.9-18.fc4 100% | 37.0 MiB/s | 113.7 KiB | 00m00s [147/190] gnupg2-keyboxd-0:2.4.9-18.fc4 100% | 29.5 MiB/s | 90.7 KiB | 00m00s [148/190] gnupg2-verify-0:2.4.9-18.fc45 100% | 79.6 MiB/s | 163.1 KiB | 00m00s [149/190] libassuan-0:2.5.7-6.fc45.aarc 100% | 32.6 MiB/s | 66.7 KiB | 00m00s [150/190] libgcrypt-0:1.12.4-1.fc46.aar 100% | 175.6 MiB/s | 539.5 KiB | 00m00s [151/190] libgpg-error-0:1.61-2.fc45.aa 100% | 80.8 MiB/s | 248.2 KiB | 00m00s [152/190] npth-0:1.8-5.fc45.aarch64 100% | 8.1 MiB/s | 24.8 KiB | 00m00s [153/190] tpm2-tss-0:4.2.0-1.fc45.aarch 100% | 134.6 MiB/s | 413.5 KiB | 00m00s [154/190] gnutls-0:3.8.13-5.fc46.aarch6 100% | 216.5 MiB/s | 1.3 MiB | 00m00s [155/190] libksba-0:1.8.1-1.fc46.aarch6 100% | 26.4 MiB/s | 162.3 KiB | 00m00s [156/190] openldap-0:2.6.15-1.fc46.aarc 100% | 49.3 MiB/s | 252.6 KiB | 00m00s [157/190] libusb1-0:1.0.30-2.fc45.aarch 100% | 38.6 MiB/s | 79.2 KiB | 00m00s [158/190] libidn2-0:2.3.8-4.fc45.aarch6 100% | 56.7 MiB/s | 174.3 KiB | 00m00s [159/190] libunistring-0:1.1-12.fc45.aa 100% | 131.5 MiB/s | 538.4 KiB | 00m00s [160/190] nettle-0:4.0-5.fc45.aarch64 100% | 83.7 MiB/s | 428.3 KiB | 00m00s [161/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 124.8 MiB/s | 766.6 KiB | 00m00s [162/190] libevent-0:2.1.13-1.fc46.aarc 100% | 53.3 MiB/s | 272.8 KiB | 00m00s [163/190] libtool-ltdl-0:2.6.2-1.fc46.a 100% | 8.7 MiB/s | 35.6 KiB | 00m00s [164/190] gdbm-libs-1:1.26-1.fc46.aarch 100% | 18.8 MiB/s | 57.7 KiB | 00m00s [165/190] fedora-release-0:46-0.1.noarc 100% | 3.9 MiB/s | 11.9 KiB | 00m00s [166/190] systemd-standalone-sysusers-0 100% | 96.6 MiB/s | 395.8 KiB | 00m00s [167/190] xxhash-libs-0:0.8.4-1.fc46.aa 100% | 2.8 MiB/s | 34.0 KiB | 00m00s [168/190] fedora-release-identity-basic 100% | 1.1 MiB/s | 12.7 KiB | 00m00s [169/190] gdb-minimal-0:17.2-6.fc46.aar 100% | 241.2 MiB/s | 4.3 MiB | 00m00s [170/190] libcurl-0:8.23.0~rc2-1.fc46.a 100% | 75.4 MiB/s | 463.3 KiB | 00m00s [171/190] krb5-libs-0:1.22.2-9.fc45.aar 100% | 92.8 MiB/s | 760.6 KiB | 00m00s [172/190] libbrotli-0:1.2.0-6.fc45.aarc 100% | 85.2 MiB/s | 348.8 KiB | 00m00s [173/190] libnghttp2-0:1.69.0-6.fc46.aa 100% | 24.3 MiB/s | 74.7 KiB | 00m00s [174/190] libnghttp3-0:1.18.0-1.fc45.aa 100% | 22.8 MiB/s | 70.1 KiB | 00m00s [175/190] libpsl-0:0.23.3-1.fc46.aarch6 100% | 32.9 MiB/s | 67.4 KiB | 00m00s [176/190] libssh-0:0.12.2-1.fc45.aarch6 100% | 67.7 MiB/s | 277.2 KiB | 00m00s [177/190] ngtcp2-0:1.22.1-3.fc45.aarch6 100% | 48.0 MiB/s | 147.5 KiB | 00m00s [178/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 12.8 MiB/s | 26.2 KiB | 00m00s [179/190] keyutils-libs-0:1.6.3-8.fc45. 100% | 15.4 MiB/s | 31.5 KiB | 00m00s [180/190] libcom_err-0:1.47.4-2.fc45.aa 100% | 8.6 MiB/s | 26.5 KiB | 00m00s [181/190] libverto-0:0.3.2-13.fc45.aarc 100% | 6.7 MiB/s | 20.4 KiB | 00m00s [182/190] publicsuffix-list-dafsa-0:202 100% | 29.8 MiB/s | 61.1 KiB | 00m00s [183/190] libfido2-0:1.17.0-6.fc46.aarc 100% | 48.4 MiB/s | 99.2 KiB | 00m00s [184/190] libssh-config-0:0.12.2-1.fc45 100% | 4.4 MiB/s | 8.9 KiB | 00m00s [185/190] libcbor-0:0.14.0-3.fc45.aarch 100% | 11.4 MiB/s | 35.1 KiB | 00m00s [186/190] policycoreutils-0:3.11-2.fc45 100% | 25.6 MiB/s | 262.3 KiB | 00m00s [187/190] selinux-policy-0:45.21-1.fc46 100% | 2.9 MiB/s | 42.0 KiB | 00m00s [188/190] libselinux-utils-0:3.11-5.fc4 100% | 17.7 MiB/s | 127.0 KiB | 00m00s [189/190] selinux-policy-targeted-0:45. 100% | 262.4 MiB/s | 6.8 MiB | 00m00s [190/190] rpm-plugin-selinux-0:6.1.0-1. 100% | 1.8 MiB/s | 18.0 KiB | 00m00s -------------------------------------------------------------------------------- [190/190] Total 100% | 186.8 MiB/s | 68.6 MiB | 00m00s Running transaction Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x9488FB64: UserID : "Fedora (47) " Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary The key was successfully imported. [ 1/192] Verify package files 100% | 742.0 B/s | 190.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-aarch64-1791377181.977405/root/etc/group for id/name lookup: No such file or directory [ 2/192] Prepare transaction 100% | 2.2 KiB/s | 190.0 B | 00m00s [ 3/192] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB | 00m00s [ 4/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/192] Installing redhat-systemd-pre 100% | 17.7 MiB/s | 18.1 KiB | 00m00s [ 6/192] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/192] Installing publicsuffix-list- 100% | 70.3 MiB/s | 72.0 KiB | 00m00s [ 8/192] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 9/192] Installing fedora-gpg-keys-0: 100% | 25.4 MiB/s | 181.7 KiB | 00m00s [ 10/192] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 11/192] Installing fedora-repos-0:46- 100% | 0.0 B/s | 5.9 KiB | 00m00s [ 12/192] Installing fedora-release-com 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 13/192] Installing fedora-release-0:4 100% | 20.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/192] Installing setup-0:2.15.1-2.f 100% | 28.6 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/192] Installing filesystem-0:3.18- 100% | 1.5 MiB/s | 253.6 KiB | 00m00s [ 16/192] Installing pkgconf-m4-0:2.5.1 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [ 17/192] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB | 00m00s [ 18/192] Installing gnulib-l10n-0:2024 100% | 107.7 MiB/s | 661.9 KiB | 00m00s [ 19/192] Installing coreutils-common-0 100% | 282.0 MiB/s | 11.6 MiB | 00m00s [ 20/192] Installing ncurses-base-0:6.6 100% | 43.4 MiB/s | 355.3 KiB | 00m00s [ 21/192] Installing bash-0:5.3.20-1.fc 100% | 172.1 MiB/s | 8.4 MiB | 00m00s [ 22/192] Installing glibc-common-0:2.4 100% | 43.0 MiB/s | 1.3 MiB | 00m00s [ 23/192] Installing glibc-gconv-extra- 100% | 346.0 MiB/s | 18.7 MiB | 00m00s [ 24/192] Installing glibc-0:2.44.9000- 100% | 129.2 MiB/s | 6.6 MiB | 00m00s [ 25/192] Installing ncurses-libs-0:6.6 100% | 207.6 MiB/s | 1.2 MiB | 00m00s [ 26/192] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/192] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB | 00m00s [ 28/192] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/192] Installing libgpg-error-0:1.6 100% | 36.3 MiB/s | 1.0 MiB | 00m00s [ 30/192] Installing readline-0:8.3-7.f 100% | 184.1 MiB/s | 565.7 KiB | 00m00s [ 31/192] Installing libstdc++-0:16.2.1 100% | 297.2 MiB/s | 3.0 MiB | 00m00s [ 32/192] Installing libzstd-0:1.5.7-6. 100% | 280.5 MiB/s | 861.6 KiB | 00m00s [ 33/192] Installing elfutils-libelf-0: 100% | 291.7 MiB/s | 1.5 MiB | 00m00s [ 34/192] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 35/192] Installing libgcrypt-0:1.12.4 100% | 240.7 MiB/s | 1.2 MiB | 00m00s [ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 37/192] Installing libacl-0:2.4.0-2.f 100% | 67.1 MiB/s | 68.8 KiB | 00m00s [ 38/192] Installing systemd-libs-0:262 100% | 309.0 MiB/s | 2.8 MiB | 00m00s [ 39/192] Installing libuuid-0:2.42.4-2 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 40/192] Installing popt-0:1.19-11.fc4 100% | 36.9 MiB/s | 151.3 KiB | 00m00s [ 41/192] Installing xz-libs-1:5.8.4-1. 100% | 260.3 MiB/s | 266.6 KiB | 00m00s [ 42/192] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s | 1.6 MiB | 00m00s [ 43/192] Installing npth-0:1.8-5.fc45. 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [ 44/192] Installing elfutils-libs-0:0. 100% | 243.7 MiB/s | 748.5 KiB | 00m00s [ 45/192] Installing libblkid-0:2.42.4- 100% | 142.2 MiB/s | 291.3 KiB | 00m00s [ 46/192] Installing libsepol-0:3.11-2. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 47/192] Installing gnupg2-gpgconf-0:2 100% | 13.2 MiB/s | 323.9 KiB | 00m00s [ 48/192] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.8 KiB | 00m00s [ 49/192] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.5 KiB | 00m00s [ 50/192] Installing grep-0:3.12-4.fc45 100% | 34.6 MiB/s | 1.0 MiB | 00m00s [ 51/192] Installing sed-0:4.10-2.fc45. 100% | 29.9 MiB/s | 886.9 KiB | 00m00s [ 52/192] Installing findutils-1:4.11.0 100% | 63.0 MiB/s | 2.0 MiB | 00m00s [ 53/192] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 54/192] Installing json-c-0:0.18-9.fc 100% | 136.5 MiB/s | 139.8 KiB | 00m00s [ 55/192] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB | 00m00s [ 56/192] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 57/192] Installing libidn2-0:2.3.8-4. 100% | 61.5 MiB/s | 566.6 KiB | 00m00s [ 58/192] Installing crypto-policies-0: 100% | 19.5 MiB/s | 159.5 KiB | 00m00s [ 59/192] Installing xz-1:5.8.4-1.fc46. 100% | 45.6 MiB/s | 1.5 MiB | 00m00s [ 60/192] Installing libmount-0:2.42.4- 100% | 205.8 MiB/s | 421.5 KiB | 00m00s [ 61/192] Installing gnupg2-verify-0:2. 100% | 14.9 MiB/s | 365.7 KiB | 00m00s [ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 184.8 MiB/s | 757.1 KiB | 00m00s [ 63/192] Installing gawk-0:5.4.1-1.fc4 100% | 88.7 MiB/s | 2.9 MiB | 00m00s [ 64/192] Installing dwz-0:0.17-3.fc45. 100% | 13.2 MiB/s | 324.0 KiB | 00m00s [ 65/192] Installing libksba-0:1.8.1-1. 100% | 133.6 MiB/s | 410.3 KiB | 00m00s [ 66/192] Installing unzip-0:6.0-71.fc4 100% | 18.5 MiB/s | 473.4 KiB | 00m00s [ 67/192] Installing file-libs-0:5.48-3 100% | 588.6 MiB/s | 12.4 MiB | 00m00s [ 68/192] Installing file-0:5.48-3.fc46 100% | 5.8 MiB/s | 143.4 KiB | 00m00s [ 69/192] Installing diffutils-0:3.12-6 100% | 52.4 MiB/s | 1.6 MiB | 00m00s [ 70/192] Installing libattr-0:2.6.0-2. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 71/192] Installing libeconf-0:0.7.9-4 100% | 80.6 MiB/s | 82.5 KiB | 00m00s [ 72/192] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 73/192] Installing audit-libs-0:4.2.1 100% | 159.3 MiB/s | 489.3 KiB | 00m00s [ 74/192] Installing pam-libs-0:1.7.2-4 100% | 109.9 MiB/s | 225.1 KiB | 00m00s [ 75/192] Installing libcap-0:2.78-2.fc 100% | 19.3 MiB/s | 513.5 KiB | 00m00s [ 76/192] Installing libsemanage-0:3.11 100% | 176.8 MiB/s | 362.0 KiB | 00m00s [ 77/192] Installing libsmartcols-0:2.4 100% | 110.1 MiB/s | 225.4 KiB | 00m00s [ 78/192] Installing alternatives-0:1.3 100% | 3.7 MiB/s | 91.7 KiB | 00m00s [ 79/192] Installing lua-libs-0:5.5.1-2 100% | 161.9 MiB/s | 331.5 KiB | 00m00s [ 80/192] Installing libffi-0:3.8.0-1.f 100% | 157.2 MiB/s | 161.0 KiB | 00m00s [ 81/192] Installing p11-kit-0:0.26.5-1 100% | 75.7 MiB/s | 2.8 MiB | 00m00s [ 82/192] Installing p11-kit-trust-0:0. 100% | 17.3 MiB/s | 531.9 KiB | 00m00s [ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 111.5 MiB/s | 342.7 KiB | 00m00s [ 84/192] Installing util-linux-core-0: 100% | 72.4 MiB/s | 2.5 MiB | 00m00s [ 85/192] Installing liblastlog2-0:2.42 100% | 27.3 MiB/s | 139.8 KiB | 00m00s [ 86/192] Installing zip-0:3.0-46.fc45. 100% | 26.7 MiB/s | 766.1 KiB | 00m00s [ 87/192] Installing gnupg2-keyboxd-0:2 100% | 38.2 MiB/s | 234.5 KiB | 00m00s [ 88/192] Installing libpsl-0:0.23.3-1. 100% | 65.2 MiB/s | 133.6 KiB | 00m00s [ 89/192] Installing tar-2:1.35-9.fc45. 100% | 81.2 MiB/s | 3.0 MiB | 00m00s [ 90/192] Installing linkdupes-0:0.7.3- 100% | 25.8 MiB/s | 712.4 KiB | 00m00s [ 91/192] Installing libselinux-utils-0 100% | 46.8 MiB/s | 1.4 MiB | 00m00s [ 92/192] Installing libfdisk-0:2.42.4- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [ 93/192] Installing fips-provider-0:1. 100% | 315.8 MiB/s | 3.8 MiB | 00m00s [ 94/192] Installing openssl-libs-1:4.0 100% | 290.6 MiB/s | 5.8 MiB | 00m00s [ 95/192] Installing coreutils-0:9.12-1 100% | 156.4 MiB/s | 8.6 MiB | 00m00s [ 96/192] Installing ca-certificates-0: 100% | 1.5 MiB/s | 2.5 MiB | 00m02s [ 97/192] Installing gzip-0:1.14-4.fc45 100% | 15.5 MiB/s | 443.1 KiB | 00m00s [ 98/192] Installing util-linux-0:2.42. 100% | 114.9 MiB/s | 7.0 MiB | 00m00s [ 99/192] Installing policycoreutils-0: 100% | 36.4 MiB/s | 1.5 MiB | 00m00s [100/192] Installing selinux-policy-0:4 100% | 1.7 MiB/s | 34.5 KiB | 00m00s [101/192] Installing selinux-policy-tar 100% | 122.2 MiB/s | 15.2 MiB | 00m00s [102/192] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s | 2.3 MiB | 00m00s [103/192] Installing libfsverity-0:1.7- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [104/192] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [105/192] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [106/192] Installing libusb1-0:1.0.30-2 100% | 14.8 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/192] Installing tpm2-tss-0:4.2.0-1 100% | 223.5 MiB/s | 2.2 MiB | 00m00s [108/192] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [109/192] Installing gnupg2-gpg-agent-0 100% | 25.2 MiB/s | 850.8 KiB | 00m00s [110/192] Installing nettle-0:4.0-5.fc4 100% | 164.0 MiB/s | 839.8 KiB | 00m00s [111/192] Installing gnutls-0:3.8.13-5. 100% | 285.4 MiB/s | 3.7 MiB | 00m00s [112/192] Installing zstd-0:1.5.7-6.fc4 100% | 21.3 MiB/s | 565.9 KiB | 00m00s [113/192] Installing libxml2-0:2.15.4-1 100% | 59.3 MiB/s | 1.7 MiB | 00m00s [114/192] Installing bzip2-0:1.0.8-24.f 100% | 7.1 MiB/s | 175.7 KiB | 00m00s [115/192] Installing add-determinism-0: 100% | 65.7 MiB/s | 1.9 MiB | 00m00s [116/192] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [117/192] Installing cpio-0:2.15-10.fc4 100% | 37.8 MiB/s | 1.1 MiB | 00m00s [118/192] Installing ed-0:1.22.6-1.fc46 100% | 6.6 MiB/s | 161.2 KiB | 00m00s [119/192] Installing patch-0:2.8-6.fc46 100% | 10.7 MiB/s | 263.9 KiB | 00m00s [120/192] Installing jansson-0:2.14-5.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [121/192] Installing libpfm-0:4.13.0-23 100% | 247.4 MiB/s | 253.3 KiB | 00m00s [122/192] Installing lz4-libs-0:1.10.0- 100% | 193.8 MiB/s | 198.4 KiB | 00m00s [123/192] Installing libarchive-0:3.8.9 100% | 190.9 MiB/s | 977.6 KiB | 00m00s [124/192] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB | 00m00s [125/192] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB | 00m00s [126/192] Installing pkgconf-0:2.5.1-2. 100% | 4.9 MiB/s | 119.3 KiB | 00m00s [127/192] Installing pkgconf-pkg-config 100% | 73.9 KiB/s | 1.8 KiB | 00m00s [128/192] Installing libtool-ltdl-0:2.6 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [129/192] Installing gdbm-libs-1:1.26-1 100% | 115.2 MiB/s | 236.0 KiB | 00m00s [130/192] Installing cyrus-sasl-lib-0:2 100% | 75.5 MiB/s | 2.4 MiB | 00m00s [131/192] Installing openldap-0:2.6.15- 100% | 187.8 MiB/s | 769.4 KiB | 00m00s [132/192] Installing gnupg2-dirmngr-0:2 100% | 21.1 MiB/s | 648.9 KiB | 00m00s [133/192] Installing gnupg2-0:2.4.9-18. 100% | 140.4 MiB/s | 6.5 MiB | 00m00s [134/192] Installing gpgverify-0:2.2-5. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [135/192] Installing systemd-standalone 100% | 36.8 MiB/s | 979.9 KiB | 00m00s [136/192] Installing rpm-libs-0:6.1.0-1 100% | 220.1 MiB/s | 1.1 MiB | 00m00s [137/192] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [138/192] Installing rpm-build-libs-0:6 100% | 129.3 MiB/s | 264.9 KiB | 00m00s [139/192] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [140/192] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.5 KiB | 00m00s [141/192] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB | 00m00s [142/192] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB | 00m00s [143/192] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.7 KiB | 00m00s [144/192] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB | 00m00s [145/192] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [146/192] Installing krb5-libs-0:1.22.2 100% | 230.3 MiB/s | 2.5 MiB | 00m00s [147/192] Installing libcbor-0:0.14.0-3 100% | 137.7 MiB/s | 141.0 KiB | 00m00s [148/192] Installing libfido2-0:1.17.0- 100% | 137.8 MiB/s | 282.2 KiB | 00m00s [149/192] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [150/192] Installing libcurl-0:8.23.0~r 100% | 255.7 MiB/s | 1.0 MiB | 00m00s [151/192] Installing elfutils-debuginfo 100% | 5.7 MiB/s | 146.3 KiB | 00m00s [152/192] Installing binutils-0:2.47.50 100% | 254.5 MiB/s | 27.2 MiB | 00m00s [153/192] Installing elfutils-0:0.196-1 100% | 105.0 MiB/s | 3.8 MiB | 00m00s [154/192] Installing gdb-minimal-0:17.2 100% | 196.2 MiB/s | 13.5 MiB | 00m00s [155/192] Installing debugedit-0:5.3-3. 100% | 12.2 MiB/s | 324.2 KiB | 00m00s [156/192] Installing curl-0:8.23.0~rc2- 100% | 15.2 MiB/s | 528.3 KiB | 00m00s [157/192] Installing rpm-0:6.1.0-1.fc46 100% | 52.0 MiB/s | 2.8 MiB | 00m00s [158/192] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [159/192] Installing efi-srpm-macros-0: 100% | 40.3 MiB/s | 41.3 KiB | 00m00s [160/192] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [161/192] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/192] Installing tree-sitter-srpm-m 100% | 9.4 MiB/s | 9.6 KiB | 00m00s [163/192] Installing zig-srpm-macros-0: 100% | 1.8 MiB/s | 1.9 KiB | 00m00s [164/192] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [165/192] Installing rust-srpm-macros-0 100% | 6.2 MiB/s | 6.4 KiB | 00m00s [166/192] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [167/192] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [168/192] Installing perl-srpm-macros-0 100% | 185.5 KiB/s | 1.1 KiB | 00m00s [169/192] Installing package-notes-srpm 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [170/192] Installing openblas-srpm-macr 100% | 0.0 B/s | 404.0 B | 00m00s [171/192] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [172/192] Installing meson-srpm-macros- 100% | 0.0 B/s | 1.9 KiB | 00m00s [173/192] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [174/192] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [175/192] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [176/192] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [177/192] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [178/192] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [179/192] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [180/192] Installing redhat-rpm-config- 100% | 62.0 MiB/s | 190.4 KiB | 00m00s [181/192] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [182/192] Installing rpm-build-0:6.1.0- 100% | 21.1 MiB/s | 626.1 KiB | 00m00s [183/192] Installing erlang-srpm-macros 100% | 2.5 MiB/s | 2.6 KiB | 00m00s [184/192] Installing pyproject-srpm-mac 100% | 3.9 MiB/s | 4.0 KiB | 00m00s [185/192] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [186/192] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [187/192] Installing R-srpm-macros-0:1. 100% | 4.3 MiB/s | 4.4 KiB | 00m00s [188/192] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [189/192] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [190/192] Installing which-0:2.25-2.fc4 100% | 4.7 MiB/s | 125.8 KiB | 00m00s [191/192] Installing shadow-utils-2:4.2 100% | 85.5 MiB/s | 4.4 MiB | 00m00s [192/192] Installing info-0:7.3-3.fc45. 100% | 49.9 KiB/s | 424.8 KiB | 00m09s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-3.fc45.noarch add-determinism-0.7.3-3.fc45.aarch64 alternatives-1.33-6.fc45.aarch64 ansible-srpm-macros-1-22.fc45.noarch audit-libs-4.2.1-2.fc45.aarch64 bash-5.3.20-1.fc46.aarch64 binutils-2.47.50-12.fc46.aarch64 build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch bzip2-1.0.8-24.fc45.aarch64 bzip2-libs-1.0.8-24.fc45.aarch64 ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch cmake-srpm-macros-4.3.0-5.fc45.noarch coreutils-9.12-1.fc46.aarch64 coreutils-common-9.12-1.fc46.aarch64 cpio-2.15-10.fc45.aarch64 crypto-policies-20260713-2.gitc42da77.fc45.noarch curl-8.23.0~rc2-1.fc46.aarch64 cyrus-sasl-lib-2.1.28-37.fc45.aarch64 debugedit-5.3-3.fc45.aarch64 diffutils-3.12-6.fc45.aarch64 dwz-0.17-3.fc45.aarch64 ed-1.22.6-1.fc46.aarch64 efi-srpm-macros-6-9.fc45.noarch elfutils-0.196-1.fc46.aarch64 elfutils-debuginfod-client-0.196-1.fc46.aarch64 elfutils-libelf-0.196-1.fc46.aarch64 elfutils-libs-0.196-1.fc46.aarch64 erlang-srpm-macros-0.4.0-1.fc46.noarch fedora-gpg-keys-46-0.3.noarch fedora-release-46-0.1.noarch fedora-release-common-46-0.1.noarch fedora-release-identity-basic-46-0.1.noarch fedora-repos-46-0.3.noarch fedora-repos-rawhide-46-0.3.noarch file-5.48-3.fc46.aarch64 file-libs-5.48-3.fc46.aarch64 filesystem-3.18-59.fc45.aarch64 filesystem-srpm-macros-3.18-59.fc45.noarch findutils-4.11.0-2.fc45.aarch64 fips-provider-1.5.3-1.fc46.aarch64 fonts-srpm-macros-5.0.0-4.fc45.noarch forge-srpm-macros-0.4.0-5.fc45.noarch fpc-srpm-macros-1.3-17.fc45.noarch gap-srpm-macros-2-3.fc45.noarch gawk-5.4.1-1.fc45.aarch64 gdb-minimal-17.2-6.fc46.aarch64 gdbm-libs-1.26-1.fc46.aarch64 ghc-srpm-macros-1.10-2.fc45.noarch glibc-2.44.9000-4.fc46.aarch64 glibc-common-2.44.9000-4.fc46.aarch64 glibc-gconv-extra-2.44.9000-4.fc46.aarch64 glibc-minimal-langpack-2.44.9000-4.fc46.aarch64 gmp-6.3.0-6.fc45.aarch64 gnat-srpm-macros-7-3.fc45.noarch gnome-srpm-macros-1.0-2.fc45.noarch gnulib-l10n-20241231-4.fc45.noarch gnupg2-2.4.9-18.fc45.aarch64 gnupg2-dirmngr-2.4.9-18.fc45.aarch64 gnupg2-gpg-agent-2.4.9-18.fc45.aarch64 gnupg2-gpgconf-2.4.9-18.fc45.aarch64 gnupg2-keyboxd-2.4.9-18.fc45.aarch64 gnupg2-verify-2.4.9-18.fc45.aarch64 gnutls-3.8.13-5.fc46.aarch64 go-srpm-macros-3.8.0-3.fc45.noarch gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-5.fc45.noarch grep-3.12-4.fc45.aarch64 gzip-1.14-4.fc45.aarch64 ima-evm-utils-libs-1.6.2-12.fc45.aarch64 info-7.3-3.fc45.aarch64 jansson-2.14-5.fc45.aarch64 java-srpm-macros-1-9.fc45.noarch json-c-0.18-9.fc45.aarch64 kernel-srpm-macros-1.0-30.fc45.noarch keyutils-libs-1.6.3-8.fc45.aarch64 krb5-libs-1.22.2-9.fc45.aarch64 libacl-2.4.0-2.fc45.aarch64 libarchive-3.8.9-2.fc46.aarch64 libassuan-2.5.7-6.fc45.aarch64 libattr-2.6.0-2.fc45.aarch64 libblkid-2.42.4-2.fc46.aarch64 libbrotli-1.2.0-6.fc45.aarch64 libcap-2.78-2.fc45.aarch64 libcap-ng-0.9.6-1.fc46.aarch64 libcbor-0.14.0-3.fc45.aarch64 libcom_err-1.47.4-2.fc45.aarch64 libcurl-8.23.0~rc2-1.fc46.aarch64 libeconf-0.7.9-4.fc45.aarch64 libevent-2.1.13-1.fc46.aarch64 libfdisk-2.42.4-2.fc46.aarch64 libffi-3.8.0-1.fc46.aarch64 libfido2-1.17.0-6.fc46.aarch64 libfsverity-1.7-4.fc45.aarch64 libgcc-16.2.1-2.fc46.1.aarch64 libgcrypt-1.12.4-1.fc46.aarch64 libgomp-16.2.1-2.fc46.1.aarch64 libgpg-error-1.61-2.fc45.aarch64 libidn2-2.3.8-4.fc45.aarch64 libksba-1.8.1-1.fc46.aarch64 liblastlog2-2.42.4-2.fc46.aarch64 libmount-2.42.4-2.fc46.aarch64 libnghttp2-1.69.0-6.fc46.aarch64 libnghttp3-1.18.0-1.fc45.aarch64 libpfm-4.13.0-23.fc45.aarch64 libpkgconf-2.5.1-2.fc45.aarch64 libpsl-0.23.3-1.fc46.aarch64 libselinux-3.11-5.fc46.aarch64 libselinux-utils-3.11-5.fc46.aarch64 libsemanage-3.11-4.fc46.aarch64 libsepol-3.11-2.fc45.aarch64 libsmartcols-2.42.4-2.fc46.aarch64 libssh-0.12.2-1.fc45.aarch64 libssh-config-0.12.2-1.fc45.noarch libstdc++-16.2.1-2.fc46.1.aarch64 libtasn1-4.21.0-2.fc45.aarch64 libtool-ltdl-2.6.2-1.fc46.aarch64 libunistring-1.1-12.fc45.aarch64 libusb1-1.0.30-2.fc45.aarch64 libuuid-2.42.4-2.fc46.aarch64 libverto-0.3.2-13.fc45.aarch64 libxcrypt-4.5.2-4.fc45.aarch64 libxml2-2.15.4-1.fc46.aarch64 libzstd-1.5.7-6.fc45.aarch64 linkdupes-0.7.3-3.fc45.aarch64 lua-libs-5.5.1-2.fc46.aarch64 lua-srpm-macros-1-18.fc45.noarch lz4-libs-1.10.0-5.fc45.aarch64 meson-srpm-macros-1.12.1-2.fc46.noarch mpfr-4.2.2-4.fc45.aarch64 ncurses-base-6.6-3.fc45.noarch ncurses-libs-6.6-3.fc45.aarch64 nettle-4.0-5.fc45.aarch64 ngtcp2-1.22.1-3.fc45.aarch64 ngtcp2-crypto-ossl-1.22.1-3.fc45.aarch64 npth-1.8-5.fc45.aarch64 ocaml-srpm-macros-11-4.fc45.noarch openblas-srpm-macros-2-23.fc46.noarch openldap-2.6.15-1.fc46.aarch64 openssl-libs-4.0.3-1.fc46.aarch64 p11-kit-0.26.5-1.fc45.aarch64 p11-kit-trust-0.26.5-1.fc45.aarch64 package-notes-srpm-macros-0.20-2.fc45.noarch pam-libs-1.7.2-4.fc45.aarch64 patch-2.8-6.fc46.aarch64 pcre2-10.47-1.fc45.2.aarch64 pcre2-syntax-10.47-1.fc45.2.noarch perl-srpm-macros-1-65.fc45.noarch pkgconf-2.5.1-2.fc45.aarch64 pkgconf-m4-2.5.1-2.fc45.noarch pkgconf-pkg-config-2.5.1-2.fc45.aarch64 policycoreutils-3.11-2.fc45.aarch64 popt-1.19-11.fc45.aarch64 publicsuffix-list-dafsa-20260624-2.fc45.noarch pyproject-srpm-macros-1.23.2-1.fc45.noarch python-srpm-macros-3.15-2.fc45.noarch qt5-srpm-macros-5.15.18-3.fc45.noarch qt6-srpm-macros-6.11.2-1.fc46.noarch readline-8.3-7.fc46.aarch64 redhat-rpm-config-345-4.fc46.noarch redhat-systemd-presets-102-3.fc45.noarch redhat-systemd-presets-common-102-3.fc45.noarch rpm-6.1.0-1.fc46.aarch64 rpm-build-6.1.0-1.fc46.aarch64 rpm-build-libs-6.1.0-1.fc46.aarch64 rpm-libs-6.1.0-1.fc46.aarch64 rpm-plugin-selinux-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 rpm-sign-libs-6.1.0-1.fc46.aarch64 rust-srpm-macros-28.5-2.fc45.noarch sed-4.10-2.fc45.aarch64 selinux-policy-45.21-1.fc46.noarch selinux-policy-targeted-45.21-1.fc46.noarch setup-2.15.1-2.fc45.noarch shadow-utils-4.20.0-1.fc45.aarch64 sqlite-libs-3.53.4-1.fc45.aarch64 systemd-libs-262-3.fc46.aarch64 systemd-standalone-sysusers-262-3.fc46.aarch64 tar-1.35-9.fc45.aarch64 tpm2-tss-4.2.0-1.fc45.aarch64 tree-sitter-srpm-macros-0.4.6-2.fc45.noarch unzip-6.0-71.fc45.aarch64 util-linux-2.42.4-2.fc46.aarch64 util-linux-core-2.42.4-2.fc46.aarch64 which-2.25-2.fc45.aarch64 xxhash-libs-0.8.4-1.fc46.aarch64 xz-5.8.4-1.fc46.aarch64 xz-libs-5.8.4-1.fc46.aarch64 zig-srpm-macros-1-9.fc45.noarch zip-3.0-46.fc45.aarch64 zlib-ng-compat-2.3.3-6.fc45.aarch64 zstd-1.5.7-6.fc45.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1791377181.977405/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-71njlt26/gromacs/gromacs.spec) Config(child) 0 minutes 28 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/gromacs-2026.3-1.fc46.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791377181.977405/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791377181.977405/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791377181.977405/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Finish: chroot init Start: build phase for gromacs-2026.3-1.fc46.src.rpm Start: build setup for gromacs-2026.3-1.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Updating and loading repositories: fedora 100% | 33.5 KiB/s | 10.3 KiB | 00m00s Copr repository 100% | 6.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: cmake aarch64 0:4.3.0-5.fc45 fedora 32.8 MiB fftw-devel aarch64 0:3.3.10-18.fc46 copr_base 282.2 KiB flexiblas-devel aarch64 0:3.5.0-4.fc46 fedora 6.0 MiB gcc-c++ aarch64 0:16.2.1-2.fc46.1 fedora 44.8 MiB gsl-devel aarch64 0:2.8-4.fc45 fedora 1.6 MiB hwloc aarch64 0:2.14.0-3.fc46 fedora 777.7 KiB hwloc-devel aarch64 0:2.14.0-3.fc46 fedora 658.5 KiB lmfit-devel aarch64 0:11.0-1.fc46 fedora 156.0 KiB mpich-devel aarch64 0:5.0.2-1.fc46 copr_base 2.3 MiB muParser-devel aarch64 0:2.3.5-6.fc45 fedora 127.3 KiB ocl-icd-devel aarch64 0:2.3.5-1.fc45 fedora 336.7 KiB opencl-headers noarch 0:3.1-1.20260512git6fe718c.fc45 fedora 790.9 KiB openmpi-devel aarch64 0:5.0.11-1.fc46 fedora 3.2 MiB perl-Carp noarch 0:1.54-527.fc45 fedora 46.6 KiB perl-Exporter noarch 0:5.79-527.fc45 fedora 54.2 KiB perl-File-Basename noarch 0:2.86-527.fc45 fedora 14.0 KiB perl-File-Copy noarch 0:2.43-527.fc45 fedora 19.6 KiB perl-PathTools aarch64 0:3.95-527.fc45 fedora 224.0 KiB perl-Scalar-List-Utils aarch64 5:1.70-527.fc45 fedora 152.9 KiB perl-lib aarch64 0:0.65-527.fc45 fedora 8.5 KiB perl-libs aarch64 4:5.44.0-527.fc45 fedora 12.0 MiB perl-vars noarch 0:1.05-527.fc45 fedora 3.9 KiB tng-devel aarch64 0:1.8.2-24.fc45 fedora 237.2 KiB Installing dependencies: annobin-docs noarch 0:13.32-1.fc46 fedora 99.7 KiB annobin-plugin-gcc aarch64 0:13.32-1.fc46 fedora 736.6 KiB cmake-data noarch 0:4.3.0-5.fc45 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-5.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-5.fc45 fedora 8.4 KiB cpp aarch64 0:16.2.1-2.fc46.1 fedora 40.8 MiB emacs-filesystem aarch64 1:31.1-1.fc46 fedora 0.0 B environment-modules aarch64 0:5.7.0-1.fc46 fedora 1.6 MiB expat aarch64 0:2.8.3-1.fc46 fedora 378.4 KiB fftw aarch64 0:3.3.10-18.fc46 copr_base 221.0 KiB fftw-libs aarch64 0:3.3.10-18.fc46 copr_base 0.0 B fftw-libs-double aarch64 0:3.3.10-18.fc46 copr_base 1.8 MiB fftw-libs-long aarch64 0:3.3.10-18.fc46 copr_base 2.3 MiB fftw-libs-single aarch64 0:3.3.10-18.fc46 copr_base 1.9 MiB flexiblas aarch64 0:3.5.0-4.fc46 fedora 38.0 KiB flexiblas-netlib aarch64 0:3.5.0-4.fc46 fedora 14.2 MiB flexiblas-netlib64 aarch64 0:3.5.0-4.fc46 fedora 14.0 MiB flexiblas-openblas-openmp aarch64 0:3.5.0-4.fc46 fedora 67.2 KiB flexiblas-openblas-openmp64 aarch64 0:3.5.0-4.fc46 fedora 67.2 KiB gcc aarch64 0:16.2.1-2.fc46.1 fedora 112.5 MiB gcc-gfortran aarch64 0:16.2.1-2.fc46.1 fedora 43.1 MiB gcc-plugin-annobin aarch64 0:16.2.1-2.fc46.1 fedora 69.1 KiB glibc-devel aarch64 0:2.44.9000-4.fc46 fedora 2.3 MiB groff-base aarch64 0:1.24.2-1.fc46 fedora 4.5 MiB gsl aarch64 0:2.8-4.fc45 fedora 3.4 MiB hwloc-libs aarch64 0:2.14.0-3.fc46 fedora 2.9 MiB infiniband-diags aarch64 0:65.0-5.fc46 fedora 1.6 MiB jsoncpp aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.3.0-0.rc6.51.fc46 fedora 6.9 MiB less aarch64 0:710-1.fc46 fedora 548.7 KiB libasan aarch64 0:16.2.1-2.fc46.1 fedora 1.5 MiB libatomic aarch64 0:16.2.1-2.fc46.1 fedora 77.7 KiB libedit aarch64 0:3.1-60.20260512cvs.fc45 fedora 280.3 KiB libfabric aarch64 0:2.5.1-3.fc45 fedora 1.9 MiB libgfortran aarch64 0:16.2.1-2.fc46.1 fedora 1.7 MiB libibumad aarch64 0:65.0-5.fc46 fedora 67.9 KiB libibverbs aarch64 0:65.0-5.fc46 fedora 1.8 MiB libmpc aarch64 0:1.4.1-2.fc45 fedora 216.8 KiB libnl3 aarch64 0:3.12.0-4.fc45 fedora 1.3 MiB libpipeline aarch64 0:1.5.8-5.fc45 fedora 144.9 KiB librdmacm aarch64 0:65.0-5.fc46 fedora 206.3 KiB libstdc++-devel aarch64 0:16.2.1-2.fc46.1 fedora 40.4 MiB libtommath aarch64 0:1.3.1~rc1-8.fc45 fedora 134.4 KiB libubsan aarch64 0:16.2.1-2.fc46.1 fedora 475.9 KiB libuv aarch64 1:1.52.1-2.fc45 fedora 616.4 KiB libxcrypt-devel aarch64 0:4.5.2-4.fc45 fedora 31.0 KiB lmfit aarch64 0:11.0-1.fc46 fedora 78.4 KiB make aarch64 1:4.4.1-13.fc45 fedora 1.8 MiB man-db aarch64 0:2.13.1-4.fc45 fedora 3.3 MiB mpdecimal aarch64 0:4.0.1-4.fc45 fedora 281.1 KiB mpich aarch64 0:5.0.2-1.fc46 copr_base 13.3 MiB muParser aarch64 0:2.3.5-6.fc45 fedora 552.7 KiB munge-libs aarch64 0:0.5.18-3.fc45 fedora 67.9 KiB ncurses aarch64 0:6.6-3.fc45 fedora 895.8 KiB ninja-build aarch64 0:1.13.2-6.fc45 fedora 468.8 KiB ocl-icd aarch64 0:2.3.5-1.fc45 fedora 284.2 KiB openblas aarch64 0:0.3.34-1.fc45 fedora 138.1 KiB openblas-openmp aarch64 0:0.3.34-1.fc45 fedora 22.2 MiB openblas-openmp64 aarch64 0:0.3.34-1.fc45 fedora 22.0 MiB openmpi aarch64 0:5.0.11-1.fc46 fedora 7.2 MiB openssh aarch64 0:10.5p1-1.fc46 fedora 1.6 MiB openssh-clients aarch64 0:10.5p1-1.fc46 fedora 2.6 MiB orangefs aarch64 0:2.10.1-5.fc45 fedora 3.3 MiB perl-AutoLoader noarch 0:5.74-527.fc45 fedora 20.6 KiB perl-B aarch64 0:1.92-527.fc45 fedora 557.5 KiB perl-Class-Struct noarch 0:0.68-527.fc45 fedora 25.4 KiB perl-Data-Dumper aarch64 0:2.192-528.fc45 fedora 135.5 KiB perl-Digest noarch 0:1.20-527.fc45 fedora 35.2 KiB perl-Digest-MD5 aarch64 0:2.59-527.fc45 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-527.fc45 fedora 32.1 KiB perl-Encode aarch64 4:3.24-527.fc45 fedora 4.8 MiB perl-Errno aarch64 0:1.39-527.fc45 fedora 8.4 KiB perl-Fcntl aarch64 0:1.20-527.fc45 fedora 92.7 KiB perl-File-Path noarch 0:2.18-527.fc45 fedora 63.4 KiB perl-File-Temp noarch 1:0.231.200-527.fc45 fedora 163.7 KiB perl-File-stat noarch 0:1.15-527.fc45 fedora 13.7 KiB perl-FileHandle noarch 0:2.05-527.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-527.fc45 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.15-527.fc45 fedora 12.5 KiB perl-HTTP-Tiny noarch 0:0.096-528.fc45 fedora 162.4 KiB perl-IO aarch64 0:1.56-527.fc45 fedora 191.3 KiB perl-IO-Socket-IP noarch 0:0.44-527.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-2.fc45 fedora 726.9 KiB perl-IPC-Open3 noarch 0:1.24-527.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-26.fc45 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-527.fc45 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.96-5.fc45 fedora 1.4 MiB perl-POSIX aarch64 0:2.26-527.fc45 fedora 261.4 KiB perl-Pod-Escapes noarch 1:1.07-527.fc45 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-527.fc45 fedora 163.8 KiB perl-Pod-Simple noarch 1:3.48-527.fc45 fedora 565.2 KiB perl-Pod-Usage noarch 4:2.05-527.fc45 fedora 86.3 KiB perl-SelectSaver noarch 0:1.03-527.fc45 fedora 2.1 KiB perl-Socket aarch64 4:2.043-1.fc46 fedora 145.8 KiB perl-Storable aarch64 1:3.41-527.fc45 fedora 242.9 KiB perl-Symbol noarch 0:1.09-527.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-527.fc45 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-527.fc45 fedora 29.3 KiB perl-Text-ParseWords noarch 0:3.31-527.fc45 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-527.fc45 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9780-527.fc45 fedora 151.7 KiB perl-Time-Local noarch 2:1.350-527.fc45 fedora 69.0 KiB perl-URI noarch 0:5.37-1.fc46 fedora 275.5 KiB perl-Unicode-Normalize aarch64 0:1.32-527.fc45 fedora 524.5 KiB perl-base noarch 0:2.27-527.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-528.fc45 fedora 26.3 KiB perl-if noarch 0:0.61.000-527.fc45 fedora 5.8 KiB perl-interpreter aarch64 4:5.44.0-527.fc45 fedora 175.8 KiB perl-libnet noarch 0:3.15-528.fc45 fedora 288.4 KiB perl-locale noarch 0:1.13-527.fc45 fedora 6.1 KiB perl-mro aarch64 0:1.30-527.fc45 fedora 81.5 KiB perl-overload noarch 0:1.40-527.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.03-527.fc45 fedora 4.8 KiB perl-parent noarch 1:0.244-527.fc45 fedora 10.3 KiB perl-podlators noarch 1:6.1.1-1.fc46 fedora 327.2 KiB pmix aarch64 0:6.1.0-1.fc46 fedora 2.2 MiB procps-ng aarch64 0:4.0.7-1.fc46 fedora 1.8 MiB prrte aarch64 0:4.1.0-2.fc46 fedora 351.8 KiB prrte-libs aarch64 0:4.1.0-2.fc46 fedora 1.6 MiB python-pip-wheel noarch 0:26.2.1-1.fc46 fedora 1.3 MiB python3 aarch64 0:3.15.0~rc3-2.fc46 fedora 84.8 KiB python3-libs aarch64 0:3.15.0~rc3-2.fc46 fedora 49.8 MiB rdma-core-common noarch 0:65.0-5.fc46 fedora 21.9 KiB rdma-core-devel aarch64 0:65.0-5.fc46 fedora 658.7 KiB rhash aarch64 0:1.4.5-5.fc45 fedora 394.6 KiB rpm-mpi-hooks noarch 0:8-14.fc45 fedora 8.7 KiB tcl aarch64 1:9.0.3-1.fc45 fedora 4.3 MiB tng aarch64 0:1.8.2-24.fc45 fedora 348.4 KiB tzdata noarch 0:2026e-1.fc46 fedora 1.3 MiB ucx aarch64 0:1.19.0-4.fc46 fedora 2.6 MiB vim-filesystem noarch 2:9.2.1129-1.fc46 fedora 40.0 B yaksa aarch64 0:0.4-1.fc46 fedora 5.0 MiB Transaction Summary: Installing: 155 packages Total size of inbound packages is 174 MiB. Need to download 174 MiB. After this operation, 587 MiB extra will be used (install 587 MiB, remove 0 B). [ 1/155] flexiblas-devel-0:3.5.0-4.fc4 100% | 25.8 MiB/s | 237.5 KiB | 00m00s [ 2/155] cmake-0:4.3.0-5.fc45.aarch64 100% | 212.2 MiB/s | 10.8 MiB | 00m00s [ 3/155] gsl-devel-0:2.8-4.fc45.aarch6 100% | 12.5 MiB/s | 655.1 KiB | 00m00s [ 4/155] gcc-c++-0:16.2.1-2.fc46.1.aar 100% | 174.8 MiB/s | 15.9 MiB | 00m00s [ 5/155] hwloc-devel-0:2.14.0-3.fc46.a 100% | 7.6 MiB/s | 372.8 KiB | 00m00s [ 6/155] muParser-devel-0:2.3.5-6.fc45 100% | 6.0 MiB/s | 31.0 KiB | 00m00s [ 7/155] ocl-icd-devel-0:2.3.5-1.fc45. 100% | 20.8 MiB/s | 63.8 KiB | 00m00s [ 8/155] opencl-headers-0:3.1-1.202605 100% | 30.4 MiB/s | 93.2 KiB | 00m00s [ 9/155] hwloc-0:2.14.0-3.fc46.aarch64 100% | 2.2 MiB/s | 209.5 KiB | 00m00s [ 10/155] perl-Carp-0:1.54-527.fc45.noa 100% | 7.0 MiB/s | 28.6 KiB | 00m00s [ 11/155] perl-PathTools-0:3.95-527.fc4 100% | 28.7 MiB/s | 88.0 KiB | 00m00s [ 12/155] perl-Exporter-0:5.79-527.fc45 100% | 6.0 MiB/s | 30.6 KiB | 00m00s [ 13/155] perl-File-Basename-0:2.86-527 100% | 5.5 MiB/s | 16.8 KiB | 00m00s [ 14/155] perl-File-Copy-0:2.43-527.fc4 100% | 6.4 MiB/s | 19.7 KiB | 00m00s [ 15/155] perl-Scalar-List-Utils-5:1.70 100% | 24.0 MiB/s | 73.7 KiB | 00m00s [ 16/155] lmfit-devel-0:11.0-1.fc46.aar 100% | 957.4 KiB/s | 71.8 KiB | 00m00s [ 17/155] perl-lib-0:0.65-527.fc45.aarc 100% | 3.6 MiB/s | 14.6 KiB | 00m00s [ 18/155] perl-vars-0:1.05-527.fc45.noa 100% | 3.1 MiB/s | 12.7 KiB | 00m00s [ 19/155] perl-libs-4:5.44.0-527.fc45.a 100% | 182.6 MiB/s | 2.6 MiB | 00m00s [ 20/155] openmpi-devel-0:5.0.11-1.fc46 100% | 36.5 MiB/s | 2.3 MiB | 00m00s [ 21/155] fftw-devel-0:3.3.10-18.fc46.a 100% | 731.3 KiB/s | 128.0 KiB | 00m00s [ 22/155] cmake-data-0:4.3.0-5.fc45.noa 100% | 191.5 MiB/s | 2.7 MiB | 00m00s [ 23/155] tng-devel-0:1.8.2-24.fc45.aar 100% | 148.0 KiB/s | 30.0 KiB | 00m00s [ 24/155] mpich-devel-0:5.0.2-1.fc46.aa 100% | 8.3 MiB/s | 1.6 MiB | 00m00s [ 25/155] cmake-filesystem-0:4.3.0-5.fc 100% | 4.8 MiB/s | 14.9 KiB | 00m00s [ 26/155] expat-0:2.8.3-1.fc46.aarch64 100% | 31.1 MiB/s | 127.2 KiB | 00m00s [ 27/155] jsoncpp-0:1.9.6-3.fc44.aarch6 100% | 23.2 MiB/s | 94.8 KiB | 00m00s [ 28/155] libuv-1:1.52.1-2.fc45.aarch64 100% | 51.8 MiB/s | 265.0 KiB | 00m00s [ 29/155] make-1:4.4.1-13.fc45.aarch64 100% | 113.9 MiB/s | 583.4 KiB | 00m00s [ 30/155] rhash-0:1.4.5-5.fc45.aarch64 100% | 31.2 MiB/s | 191.8 KiB | 00m00s [ 31/155] flexiblas-0:3.5.0-4.fc46.aarc 100% | 4.4 MiB/s | 22.6 KiB | 00m00s [ 32/155] libgfortran-0:16.2.1-2.fc46.1 100% | 57.1 MiB/s | 467.4 KiB | 00m00s [ 33/155] flexiblas-netlib64-0:3.5.0-4. 100% | 83.6 MiB/s | 3.8 MiB | 00m00s [ 34/155] flexiblas-netlib-0:3.5.0-4.fc 100% | 71.2 MiB/s | 4.0 MiB | 00m00s [ 35/155] libmpc-0:1.4.1-2.fc45.aarch64 100% | 3.8 MiB/s | 73.8 KiB | 00m00s [ 36/155] libstdc++-devel-0:16.2.1-2.fc 100% | 64.5 MiB/s | 5.8 MiB | 00m00s [ 37/155] gsl-0:2.8-4.fc45.aarch64 100% | 12.9 MiB/s | 1.1 MiB | 00m00s [ 38/155] gcc-0:16.2.1-2.fc46.1.aarch64 100% | 224.1 MiB/s | 39.9 MiB | 00m00s [ 39/155] rdma-core-devel-0:65.0-5.fc46 100% | 11.4 MiB/s | 500.2 KiB | 00m00s [ 40/155] hwloc-libs-0:2.14.0-3.fc46.aa 100% | 42.8 MiB/s | 2.1 MiB | 00m00s [ 41/155] muParser-0:2.3.5-6.fc45.aarch 100% | 31.2 MiB/s | 159.7 KiB | 00m00s [ 42/155] ocl-icd-0:2.3.5-1.fc45.aarch6 100% | 10.9 MiB/s | 66.9 KiB | 00m00s [ 43/155] lmfit-0:11.0-1.fc46.aarch64 100% | 611.7 KiB/s | 27.5 KiB | 00m00s [ 44/155] gcc-gfortran-0:16.2.1-2.fc46. 100% | 171.4 MiB/s | 14.9 MiB | 00m00s [ 45/155] pmix-0:6.1.0-1.fc46.aarch64 100% | 12.9 MiB/s | 710.8 KiB | 00m00s [ 46/155] rpm-mpi-hooks-0:8-14.fc45.noa 100% | 3.5 MiB/s | 10.8 KiB | 00m00s [ 47/155] perl-Errno-0:1.39-527.fc45.aa 100% | 4.8 MiB/s | 14.6 KiB | 00m00s [ 48/155] perl-constant-0:1.33-528.fc45 100% | 5.5 MiB/s | 22.7 KiB | 00m00s [ 49/155] perl-overload-0:1.40-527.fc45 100% | 14.7 MiB/s | 45.2 KiB | 00m00s [ 50/155] perl-DynaLoader-0:1.57-527.fc 100% | 12.5 MiB/s | 25.6 KiB | 00m00s [ 51/155] perl-Encode-4:3.24-527.fc45.a 100% | 116.0 MiB/s | 1.0 MiB | 00m00s [ 52/155] openmpi-0:5.0.11-1.fc46.aarch 100% | 18.4 MiB/s | 1.9 MiB | 00m00s [ 53/155] tng-0:1.8.2-24.fc45.aarch64 100% | 1.6 MiB/s | 133.4 KiB | 00m00s [ 54/155] fftw-0:3.3.10-18.fc46.aarch64 100% | 258.7 KiB/s | 39.8 KiB | 00m00s [ 55/155] emacs-filesystem-1:31.1-1.fc4 100% | 2.0 MiB/s | 8.2 KiB | 00m00s [ 56/155] vim-filesystem-2:9.2.1129-1.f 100% | 5.1 MiB/s | 15.6 KiB | 00m00s [ 57/155] flexiblas-openblas-openmp-0:3 100% | 5.2 MiB/s | 15.9 KiB | 00m00s [ 58/155] flexiblas-openblas-openmp64-0 100% | 7.8 MiB/s | 15.9 KiB | 00m00s [ 59/155] cpp-0:16.2.1-2.fc46.1.aarch64 100% | 255.9 MiB/s | 13.3 MiB | 00m00s [ 60/155] glibc-devel-0:2.44.9000-4.fc4 100% | 72.5 MiB/s | 668.3 KiB | 00m00s [ 61/155] libasan-0:16.2.1-2.fc46.1.aar 100% | 45.8 MiB/s | 516.1 KiB | 00m00s [ 62/155] libatomic-0:16.2.1-2.fc46.1.a 100% | 18.1 MiB/s | 55.6 KiB | 00m00s [ 63/155] libubsan-0:16.2.1-2.fc46.1.aa 100% | 74.3 MiB/s | 228.1 KiB | 00m00s [ 64/155] infiniband-diags-0:65.0-5.fc4 100% | 66.5 MiB/s | 340.6 KiB | 00m00s [ 65/155] fftw-libs-0:3.3.10-18.fc46.aa 100% | 28.4 KiB/s | 7.3 KiB | 00m00s [ 66/155] libibumad-0:65.0-5.fc46.aarch 100% | 7.4 MiB/s | 30.2 KiB | 00m00s [ 67/155] librdmacm-0:65.0-5.fc46.aarch 100% | 9.6 MiB/s | 78.4 KiB | 00m00s [ 68/155] rdma-core-common-0:65.0-5.fc4 100% | 3.6 MiB/s | 18.4 KiB | 00m00s [ 69/155] libfabric-0:2.5.1-3.fc45.aarc 100% | 94.8 MiB/s | 679.4 KiB | 00m00s [ 70/155] libibverbs-0:65.0-5.fc46.aarc 100% | 16.9 MiB/s | 483.1 KiB | 00m00s [ 71/155] openssh-clients-0:10.5p1-1.fc 100% | 113.8 MiB/s | 816.1 KiB | 00m00s [ 72/155] prrte-0:4.1.0-2.fc46.aarch64 100% | 8.6 MiB/s | 44.3 KiB | 00m00s [ 73/155] orangefs-0:2.10.1-5.fc45.aarc 100% | 25.8 MiB/s | 582.3 KiB | 00m00s [ 74/155] munge-libs-0:0.5.18-3.fc45.aa 100% | 4.9 MiB/s | 20.2 KiB | 00m00s [ 75/155] ucx-0:1.19.0-4.fc46.aarch64 100% | 23.2 MiB/s | 833.2 KiB | 00m00s [ 76/155] environment-modules-0:5.7.0-1 100% | 24.5 MiB/s | 402.1 KiB | 00m00s [ 77/155] mpich-0:5.0.2-1.fc46.aarch64 100% | 12.1 MiB/s | 3.2 MiB | 00m00s [ 78/155] perl-mro-0:1.30-527.fc45.aarc 100% | 5.7 MiB/s | 28.9 KiB | 00m00s [ 79/155] perl-overloading-0:0.03-527.f 100% | 2.4 MiB/s | 12.5 KiB | 00m00s [ 80/155] perl-Getopt-Std-0:1.15-527.fc 100% | 3.7 MiB/s | 15.4 KiB | 00m00s [ 81/155] perl-Getopt-Long-1:2.58-527.f 100% | 12.3 MiB/s | 63.2 KiB | 00m00s [ 82/155] perl-MIME-Base64-0:3.16-527.f 100% | 5.8 MiB/s | 29.8 KiB | 00m00s [ 83/155] perl-interpreter-4:5.44.0-527 100% | 17.8 MiB/s | 72.8 KiB | 00m00s [ 84/155] perl-Storable-1:3.41-527.fc45 100% | 18.7 MiB/s | 95.7 KiB | 00m00s [ 85/155] perl-parent-1:0.244-527.fc45. 100% | 3.6 MiB/s | 14.7 KiB | 00m00s [ 86/155] fftw-libs-single-0:3.3.10-18. 100% | 4.3 MiB/s | 691.6 KiB | 00m00s [ 87/155] yaksa-0:0.4-1.fc46.aarch64 100% | 127.7 MiB/s | 784.6 KiB | 00m00s [ 88/155] fftw-libs-long-0:3.3.10-18.fc 100% | 4.1 MiB/s | 720.5 KiB | 00m00s [ 89/155] openblas-openmp-0:0.3.34-1.fc 100% | 160.4 MiB/s | 4.2 MiB | 00m00s [ 90/155] openblas-openmp64-0:0.3.34-1. 100% | 144.6 MiB/s | 4.0 MiB | 00m00s [ 91/155] kernel-headers-0:7.3.0-0.rc6. 100% | 144.1 MiB/s | 1.7 MiB | 00m00s [ 92/155] libxcrypt-devel-0:4.5.2-4.fc4 100% | 5.9 MiB/s | 30.4 KiB | 00m00s [ 93/155] libnl3-0:3.12.0-4.fc45.aarch6 100% | 58.1 MiB/s | 357.1 KiB | 00m00s [ 94/155] libedit-0:3.1-60.20260512cvs. 100% | 14.8 MiB/s | 106.4 KiB | 00m00s [ 95/155] openssh-0:10.5p1-1.fc46.aarch 100% | 90.7 MiB/s | 371.4 KiB | 00m00s [ 96/155] less-0:710-1.fc46.aarch64 100% | 55.2 MiB/s | 226.1 KiB | 00m00s [ 97/155] prrte-libs-0:4.1.0-2.fc46.aar 100% | 40.0 MiB/s | 532.1 KiB | 00m00s [ 98/155] procps-ng-0:4.0.7-1.fc46.aarc 100% | 55.1 MiB/s | 395.2 KiB | 00m00s [ 99/155] python3-0:3.15.0~rc3-2.fc46.a 100% | 9.0 MiB/s | 27.8 KiB | 00m00s [100/155] tcl-1:9.0.3-1.fc45.aarch64 100% | 152.1 MiB/s | 1.2 MiB | 00m00s [101/155] perl-Pod-Usage-4:2.05-527.fc4 100% | 13.1 MiB/s | 40.4 KiB | 00m00s [102/155] perl-Text-ParseWords-0:3.31-5 100% | 4.0 MiB/s | 16.2 KiB | 00m00s [103/155] perl-base-0:2.27-527.fc45.noa 100% | 2.6 MiB/s | 15.9 KiB | 00m00s [104/155] perl-Fcntl-0:1.20-527.fc45.aa 100% | 7.2 MiB/s | 29.5 KiB | 00m00s [105/155] perl-IO-0:1.56-527.fc45.aarch 100% | 9.0 MiB/s | 83.0 KiB | 00m00s [106/155] man-db-0:2.13.1-4.fc45.aarch6 100% | 24.3 MiB/s | 1.4 MiB | 00m00s [107/155] openblas-0:0.3.34-1.fc45.aarc 100% | 15.7 MiB/s | 48.1 KiB | 00m00s [108/155] libpipeline-0:1.5.8-5.fc45.aa 100% | 14.4 MiB/s | 58.8 KiB | 00m00s [109/155] groff-base-0:1.24.2-1.fc46.aa 100% | 78.7 MiB/s | 1.2 MiB | 00m00s [110/155] libtommath-0:1.3.1~rc1-8.fc45 100% | 10.6 MiB/s | 65.4 KiB | 00m00s [111/155] perl-Pod-Perldoc-0:3.28.01-52 100% | 10.3 MiB/s | 84.7 KiB | 00m00s [112/155] perl-podlators-1:6.1.1-1.fc46 100% | 21.5 MiB/s | 132.4 KiB | 00m00s [113/155] perl-File-stat-0:1.15-527.fc4 100% | 2.4 MiB/s | 17.2 KiB | 00m00s [114/155] python3-libs-0:3.15.0~rc3-2.f 100% | 198.6 MiB/s | 10.9 MiB | 00m00s [115/155] perl-SelectSaver-0:1.03-527.f 100% | 756.1 KiB/s | 11.3 KiB | 00m00s [116/155] perl-Symbol-0:1.09-527.fc45.n 100% | 6.8 MiB/s | 13.9 KiB | 00m00s [117/155] perl-Socket-4:2.043-1.fc46.aa 100% | 18.0 MiB/s | 55.4 KiB | 00m00s [118/155] mpdecimal-0:4.0.1-4.fc45.aarc 100% | 23.3 MiB/s | 95.4 KiB | 00m00s [119/155] python-pip-wheel-0:26.2.1-1.f 100% | 149.1 MiB/s | 1.2 MiB | 00m00s [120/155] tzdata-0:2026e-1.fc46.noarch 100% | 99.6 MiB/s | 713.6 KiB | 00m00s [121/155] perl-File-Temp-1:0.231.200-52 100% | 9.6 MiB/s | 59.3 KiB | 00m00s [122/155] perl-HTTP-Tiny-0:0.096-528.fc 100% | 11.4 MiB/s | 58.4 KiB | 00m00s [123/155] perl-IPC-Open3-0:1.24-527.fc4 100% | 7.7 MiB/s | 23.7 KiB | 00m00s [124/155] perl-Pod-Simple-1:3.48-527.fc 100% | 43.4 MiB/s | 222.0 KiB | 00m00s [125/155] perl-POSIX-0:2.26-527.fc45.aa 100% | 23.6 MiB/s | 96.5 KiB | 00m00s [126/155] perl-Term-ANSIColor-0:5.01-52 100% | 11.6 MiB/s | 47.3 KiB | 00m00s [127/155] perl-Term-Cap-0:1.18-527.fc45 100% | 5.3 MiB/s | 21.7 KiB | 00m00s [128/155] fftw-libs-double-0:3.3.10-18. 100% | 1.7 MiB/s | 667.9 KiB | 00m00s [129/155] perl-Class-Struct-0:0.68-527. 100% | 7.1 MiB/s | 21.8 KiB | 00m00s [130/155] perl-File-Path-0:2.18-527.fc4 100% | 11.3 MiB/s | 34.8 KiB | 00m00s [131/155] perl-IO-Socket-SSL-0:2.099-2. 100% | 57.7 MiB/s | 236.2 KiB | 00m00s [132/155] perl-Net-SSLeay-0:1.96-5.fc45 100% | 74.0 MiB/s | 378.8 KiB | 00m00s [133/155] perl-Time-HiRes-4:1.9780-527. 100% | 11.2 MiB/s | 57.2 KiB | 00m00s [134/155] perl-Time-Local-2:1.350-527.f 100% | 6.7 MiB/s | 34.2 KiB | 00m00s [135/155] perl-Pod-Escapes-1:1.07-527.f 100% | 3.8 MiB/s | 19.6 KiB | 00m00s [136/155] perl-Text-Tabs+Wrap-0:2024.00 100% | 4.2 MiB/s | 21.5 KiB | 00m00s [137/155] perl-if-0:0.61.000-527.fc45.n 100% | 2.7 MiB/s | 13.7 KiB | 00m00s [138/155] perl-locale-0:1.13-527.fc45.n 100% | 4.3 MiB/s | 13.2 KiB | 00m00s [139/155] ncurses-0:6.6-3.fc45.aarch64 100% | 104.7 MiB/s | 428.8 KiB | 00m00s [140/155] perl-AutoLoader-0:5.74-527.fc 100% | 6.8 MiB/s | 20.9 KiB | 00m00s [141/155] perl-IO-Socket-IP-0:0.44-527. 100% | 6.8 MiB/s | 42.0 KiB | 00m00s [142/155] perl-URI-0:5.37-1.fc46.noarch 100% | 24.6 MiB/s | 151.0 KiB | 00m00s [143/155] perl-MIME-Base32-0:1.303-26.f 100% | 6.7 MiB/s | 20.4 KiB | 00m00s [144/155] perl-Data-Dumper-0:2.192-528. 100% | 10.7 MiB/s | 55.0 KiB | 00m00s [145/155] perl-Unicode-Normalize-0:1.32 100% | 17.6 MiB/s | 72.1 KiB | 00m00s [146/155] perl-libnet-0:3.15-528.fc45.n 100% | 41.8 MiB/s | 128.3 KiB | 00m00s [147/155] perl-Digest-MD5-0:2.59-527.fc 100% | 11.6 MiB/s | 35.5 KiB | 00m00s [148/155] perl-B-0:1.92-527.fc45.aarch6 100% | 44.5 MiB/s | 182.1 KiB | 00m00s [149/155] perl-FileHandle-0:2.05-527.fc 100% | 3.7 MiB/s | 15.2 KiB | 00m00s [150/155] perl-Digest-0:1.20-527.fc45.n 100% | 6.0 MiB/s | 24.8 KiB | 00m00s [151/155] annobin-plugin-gcc-0:13.32-1. 100% | 138.7 MiB/s | 710.0 KiB | 00m00s [152/155] gcc-plugin-annobin-0:16.2.1-2 100% | 14.5 MiB/s | 59.2 KiB | 00m00s [153/155] annobin-docs-0:13.32-1.fc46.n 100% | 28.3 MiB/s | 87.1 KiB | 00m00s [154/155] cmake-rpm-macros-0:4.3.0-5.fc 100% | 4.5 MiB/s | 13.7 KiB | 00m00s [155/155] ninja-build-0:1.13.2-6.fc45.a 100% | 25.6 MiB/s | 183.7 KiB | 00m00s -------------------------------------------------------------------------------- [155/155] Total 100% | 117.4 MiB/s | 174.2 MiB | 00m01s Running transaction [ 1/157] Verify package files 100% | 272.0 B/s | 155.0 B | 00m01s [ 2/157] Prepare transaction 100% | 1.0 KiB/s | 155.0 B | 00m00s [ 3/157] Installing hwloc-libs-0:2.14. 100% | 358.9 MiB/s | 2.9 MiB | 00m00s [ 4/157] Installing libgfortran-0:16.2 100% | 342.3 MiB/s | 1.7 MiB | 00m00s [ 5/157] Installing rdma-core-common-0 100% | 22.6 MiB/s | 23.2 KiB | 00m00s [ 6/157] Installing cmake-filesystem-0 100% | 3.0 MiB/s | 9.4 KiB | 00m00s [ 7/157] Installing libmpc-0:1.4.1-2.f 100% | 106.7 MiB/s | 218.5 KiB | 00m00s [ 8/157] Installing libnl3-0:3.12.0-4. 100% | 99.3 MiB/s | 1.3 MiB | 00m00s >>> Running sysusers scriptlet: libibverbs-0:65.0-5.fc46.aarch64 >>> Finished sysusers scriptlet: libibverbs-0:65.0-5.fc46.aarch64 >>> Scriptlet output: >>> Creating group 'rdma' with GID 999. >>> [ 9/157] Installing libibverbs-0:65.0- 100% | 178.9 MiB/s | 1.8 MiB | 00m00s [ 10/157] Installing vim-filesystem-2:9 100% | 4.7 MiB/s | 4.8 KiB | 00m00s [ 11/157] Installing librdmacm-0:65.0-5 100% | 101.7 MiB/s | 208.3 KiB | 00m00s [ 12/157] Installing libfabric-0:2.5.1- 100% | 60.4 MiB/s | 1.9 MiB | 00m00s [ 13/157] Installing libibumad-0:65.0-5 100% | 11.2 MiB/s | 68.7 KiB | 00m00s [ 14/157] Installing groff-base-0:1.24. 100% | 92.0 MiB/s | 4.5 MiB | 00m00s [ 15/157] Installing openblas-0:0.3.34- 100% | 136.6 MiB/s | 139.9 KiB | 00m00s [ 16/157] Installing less-0:710-1.fc46. 100% | 20.7 MiB/s | 552.0 KiB | 00m00s [ 17/157] Installing fftw-libs-single-0 100% | 265.4 MiB/s | 1.9 MiB | 00m00s [ 18/157] Installing fftw-libs-long-0:3 100% | 286.8 MiB/s | 2.3 MiB | 00m00s [ 19/157] Installing fftw-libs-double-0 100% | 256.5 MiB/s | 1.8 MiB | 00m00s [ 20/157] Installing emacs-filesystem-1 100% | 1.0 MiB/s | 1.1 KiB | 00m00s [ 21/157] Installing make-1:4.4.1-13.fc 100% | 59.7 MiB/s | 1.9 MiB | 00m00s [ 22/157] Installing expat-0:2.8.3-1.fc 100% | 14.3 MiB/s | 380.4 KiB | 00m00s [ 23/157] Installing fftw-0:3.3.10-18.f 100% | 8.7 MiB/s | 223.3 KiB | 00m00s [ 24/157] Installing fftw-libs-0:3.3.10 100% | 0.0 B/s | 124.0 B | 00m00s [ 25/157] Installing openblas-openmp-0: 100% | 419.3 MiB/s | 22.2 MiB | 00m00s [ 26/157] Installing flexiblas-0:3.5.0- 100% | 38.2 MiB/s | 39.2 KiB | 00m00s [ 27/157] Installing flexiblas-openblas 100% | 66.5 MiB/s | 68.1 KiB | 00m00s [ 28/157] Installing flexiblas-netlib-0 100% | 218.4 MiB/s | 14.2 MiB | 00m00s [ 29/157] Installing openblas-openmp64- 100% | 423.8 MiB/s | 22.0 MiB | 00m00s [ 30/157] Installing flexiblas-openblas 100% | 66.5 MiB/s | 68.1 KiB | 00m00s [ 31/157] Installing flexiblas-netlib64 100% | 218.9 MiB/s | 14.0 MiB | 00m00s [ 32/157] Installing orangefs-0:2.10.1- 100% | 88.8 MiB/s | 3.3 MiB | 00m00s [ 33/157] Installing cpp-0:16.2.1-2.fc4 100% | 241.3 MiB/s | 40.8 MiB | 00m00s [ 34/157] Installing annobin-docs-0:13. 100% | 98.5 MiB/s | 100.8 KiB | 00m00s [ 35/157] Installing ncurses-0:6.6-3.fc 100% | 31.5 MiB/s | 902.4 KiB | 00m00s [ 36/157] Installing perl-Digest-0:1.20 100% | 36.1 MiB/s | 37.0 KiB | 00m00s [ 37/157] Installing perl-Digest-MD5-0: 100% | 103.0 MiB/s | 105.5 KiB | 00m00s [ 38/157] Installing perl-FileHandle-0: 100% | 9.6 MiB/s | 9.8 KiB | 00m00s [ 39/157] Installing perl-B-0:1.92-527. 100% | 182.6 MiB/s | 560.9 KiB | 00m00s [ 40/157] Installing perl-libnet-0:3.15 100% | 95.6 MiB/s | 293.8 KiB | 00m00s [ 41/157] Installing perl-Data-Dumper-0 100% | 67.1 MiB/s | 137.4 KiB | 00m00s [ 42/157] Installing perl-Unicode-Norma 100% | 171.5 MiB/s | 526.8 KiB | 00m00s [ 43/157] Installing perl-MIME-Base32-0 100% | 31.4 MiB/s | 32.2 KiB | 00m00s [ 44/157] Installing perl-URI-0:5.37-1. 100% | 56.5 MiB/s | 289.2 KiB | 00m00s [ 45/157] Installing perl-AutoLoader-0: 100% | 20.5 MiB/s | 21.0 KiB | 00m00s [ 46/157] Installing perl-IO-Socket-IP- 100% | 99.9 MiB/s | 102.3 KiB | 00m00s [ 47/157] Installing perl-IO-Socket-SSL 100% | 178.5 MiB/s | 731.0 KiB | 00m00s [ 48/157] Installing perl-Net-SSLeay-0: 100% | 160.2 MiB/s | 1.4 MiB | 00m00s [ 49/157] Installing perl-locale-0:1.13 100% | 6.4 MiB/s | 6.5 KiB | 00m00s [ 50/157] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [ 51/157] Installing perl-Text-Tabs+Wra 100% | 23.3 MiB/s | 23.9 KiB | 00m00s [ 52/157] Installing perl-Pod-Escapes-1 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 53/157] Installing perl-Time-Local-2: 100% | 68.9 MiB/s | 70.6 KiB | 00m00s [ 54/157] Installing perl-Time-HiRes-4: 100% | 75.1 MiB/s | 153.7 KiB | 00m00s [ 55/157] Installing perl-File-Path-0:2 100% | 62.9 MiB/s | 64.4 KiB | 00m00s [ 56/157] Installing perl-HTTP-Tiny-0:0 100% | 80.3 MiB/s | 164.5 KiB | 00m00s [ 57/157] Installing perl-Pod-Simple-1: 100% | 140.3 MiB/s | 574.8 KiB | 00m00s [ 58/157] Installing perl-POSIX-0:2.26- 100% | 128.3 MiB/s | 262.7 KiB | 00m00s [ 59/157] Installing perl-IPC-Open3-0:1 100% | 27.8 MiB/s | 28.5 KiB | 00m00s [ 60/157] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB | 00m00s [ 61/157] Installing perl-Class-Struct- 100% | 25.3 MiB/s | 25.9 KiB | 00m00s [ 62/157] Installing perl-Term-Cap-0:1. 100% | 29.8 MiB/s | 30.6 KiB | 00m00s [ 63/157] Installing perl-Term-ANSIColo 100% | 96.8 MiB/s | 99.1 KiB | 00m00s [ 64/157] Installing perl-Pod-Perldoc-0 100% | 6.4 MiB/s | 169.4 KiB | 00m00s [ 65/157] Installing perl-podlators-1:6 100% | 12.4 MiB/s | 331.1 KiB | 00m00s [ 66/157] Installing perl-File-stat-0:1 100% | 13.9 MiB/s | 14.2 KiB | 00m00s [ 67/157] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.3 KiB | 00m00s [ 68/157] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 69/157] Installing perl-Socket-4:2.04 100% | 72.2 MiB/s | 147.8 KiB | 00m00s [ 70/157] Installing perl-Pod-Usage-4:2 100% | 3.6 MiB/s | 87.8 KiB | 00m00s [ 71/157] Installing perl-IO-0:1.56-527 100% | 95.5 MiB/s | 195.6 KiB | 00m00s [ 72/157] Installing 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[ 98/157] Installing python-pip-wheel-0 100% | 422.7 MiB/s | 1.3 MiB | 00m00s [ 99/157] Installing mpdecimal-0:4.0.1- 100% | 34.5 MiB/s | 282.7 KiB | 00m00s [100/157] Installing python3-libs-0:3.1 100% | 238.3 MiB/s | 50.3 MiB | 00m00s [101/157] Installing python3-0:3.15.0~r 100% | 3.5 MiB/s | 86.5 KiB | 00m00s [102/157] Installing ninja-build-0:1.13 100% | 17.7 MiB/s | 471.9 KiB | 00m00s [103/157] Installing cmake-rpm-macros-0 100% | 8.8 MiB/s | 9.0 KiB | 00m00s [104/157] Installing libtommath-0:1.3.1 100% | 66.2 MiB/s | 135.5 KiB | 00m00s [105/157] Installing tcl-1:9.0.3-1.fc45 100% | 99.3 MiB/s | 4.4 MiB | 00m00s [106/157] Installing libpipeline-0:1.5. 100% | 13.0 MiB/s | 146.5 KiB | 00m00s [107/157] Installing man-db-0:2.13.1-4. 100% | 61.3 MiB/s | 3.3 MiB | 00m00s [108/157] Installing procps-ng-0:4.0.7- 100% | 53.5 MiB/s | 1.8 MiB | 00m00s [109/157] Installing environment-module 100% | 39.3 MiB/s | 1.6 MiB | 00m00s [110/157] Installing rpm-mpi-hooks-0:8- 100% | 9.5 MiB/s | 9.7 KiB | 00m00s [111/157] Installing openssh-0:10.5p1-1 100% | 52.9 MiB/s | 1.6 MiB | 00m00s [112/157] Installing libedit-0:3.1-60.2 100% | 137.7 MiB/s | 282.0 KiB | 00m00s [113/157] Installing openssh-clients-0: 100% | 62.8 MiB/s | 2.6 MiB | 00m00s [114/157] Installing kernel-headers-0:7 100% | 116.2 MiB/s | 7.1 MiB | 00m00s [115/157] Installing glibc-devel-0:2.44 100% | 94.8 MiB/s | 2.4 MiB | 00m00s [116/157] Installing libxcrypt-devel-0: 100% | 32.5 MiB/s | 33.3 KiB | 00m00s [117/157] Installing yaksa-0:0.4-1.fc46 100% | 387.9 MiB/s | 5.0 MiB | 00m00s [118/157] Installing mpich-0:5.0.2-1.fc 100% | 316.2 MiB/s | 13.3 MiB | 00m00s [119/157] Installing munge-libs-0:0.5.1 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [120/157] Installing pmix-0:6.1.0-1.fc4 100% | 250.0 MiB/s | 2.3 MiB | 00m00s [121/157] Installing prrte-libs-0:4.1.0 100% | 196.7 MiB/s | 1.6 MiB | 00m00s [122/157] Installing prrte-0:4.1.0-2.fc 100% | 116.0 MiB/s | 356.2 KiB | 00m00s [123/157] Installing ucx-0:1.19.0-4.fc4 100% | 73.6 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00m00s [149/157] Installing mpich-devel-0:5.0. 100% | 70.6 MiB/s | 2.5 MiB | 00m00s [150/157] Installing annobin-plugin-gcc 100% | 51.5 MiB/s | 738.3 KiB | 00m00s [151/157] Installing gcc-plugin-annobin 100% | 4.3 MiB/s | 70.7 KiB | 00m00s [152/157] Installing hwloc-devel-0:2.14 100% | 65.8 MiB/s | 741.7 KiB | 00m00s [153/157] Installing perl-File-Copy-0:2 100% | 19.7 MiB/s | 20.2 KiB | 00m00s [154/157] Installing perl-lib-0:0.65-52 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [155/157] Installing flexiblas-devel-0: 100% | 166.3 MiB/s | 6.0 MiB | 00m00s [156/157] Installing fftw-devel-0:3.3.1 100% | 140.4 MiB/s | 287.5 KiB | 00m00s [157/157] Installing hwloc-0:2.14.0-3.f 100% | 3.3 MiB/s | 785.5 KiB | 00m00s Warning: skipped OpenPGP checks for 8 packages from repository: copr_base Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Wrote: /builddir/build/SRPMS/gromacs-2026.3-1.fc46.src.rpm Updating and loading repositories: fedora 100% | 52.1 KiB/s | 10.3 KiB | 00m00s Copr repository 100% | 10.8 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "cmake-4.3.0-5.fc45.aarch64" is already installed. Package "fftw-devel-3.3.10-18.fc46.aarch64" is already installed. Package "flexiblas-devel-3.5.0-4.fc46.aarch64" is already installed. Package "gcc-c++-16.2.1-2.fc46.1.aarch64" is already installed. Package "gsl-devel-2.8-4.fc45.aarch64" is already installed. Package "hwloc-2.14.0-3.fc46.aarch64" is already installed. Package "hwloc-devel-2.14.0-3.fc46.aarch64" is already installed. Package "lmfit-devel-11.0-1.fc46.aarch64" is already installed. Package "mpich-devel-5.0.2-1.fc46.aarch64" is already installed. Package "muParser-devel-2.3.5-6.fc45.aarch64" is already installed. Package "ocl-icd-devel-2.3.5-1.fc45.aarch64" is already installed. Package "opencl-headers-3.1-1.20260512git6fe718c.fc45.noarch" is already installed. Package "openmpi-devel-5.0.11-1.fc46.aarch64" is already installed. Package "perl-Carp-1.54-527.fc45.noarch" is already installed. Package "perl-PathTools-3.95-527.fc45.aarch64" is already installed. Package "perl-Exporter-5.79-527.fc45.noarch" is already installed. Package "perl-File-Basename-2.86-527.fc45.noarch" is already installed. Package "perl-File-Copy-2.43-527.fc45.noarch" is already installed. Package "perl-PathTools-3.95-527.fc45.aarch64" is already installed. Package "perl-Scalar-List-Utils-5:1.70-527.fc45.aarch64" is already installed. Package "perl-lib-0.65-527.fc45.aarch64" is already installed. Package "perl-libs-4:5.44.0-527.fc45.aarch64" is already installed. Nothing to do. Package "perl-vars-1.05-527.fc45.noarch" is already installed. Package "tng-devel-1.8.2-24.fc45.aarch64" is already installed. Finish: build setup for gromacs-2026.3-1.fc46.src.rpm Start: rpmbuild gromacs-2026.3-1.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1786752000 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.qb7iYO Creating(rpmbuild.env): /builddir/build/BUILD/gromacs-2026.3-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/gromacs-2026.3-build" RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="aarch64" RPM_OS="linux" RPM_BUILD_NCPUS="32" RPM_SPECPARTS_DIR="/builddir/build/BUILD/gromacs-2026.3-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="gromacs" RPM_PACKAGE_VERSION="2026.3" RPM_PACKAGE_RELEASE="1.fc46" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ycTHJG + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + cd /builddir/build/BUILD/gromacs-2026.3-build + rm -rf gromacs-2026.3 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/gromacs-2026.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2026.3 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/regressiontests-2026.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + install -Dpm644 /builddir/build/SOURCES/manual-2026.3.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/build-fftw src/external/fftpack src/external/lmfit src/external/muparser src/external/tng_io + sed -i 's/set(_timeout [0-9]*)/set(_timeout 9000)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IzX1j8 + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2026.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z '' + cp -al ../regressiontests-2026.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/tests ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/tests -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- GROMACS is being built without library MPI support (-DGMX_MPI=no). However MPI is potentially useful for the gmxapi Python API, so we will search for MPI anyway. If this causes problems, disable the check with -DCMAKE_DISABLE_FIND_PACKAGE_MPI=on. -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx' not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (19.1s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/1040] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [165/1040] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [166/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [167/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/physicalnodecommunicator.cpp [169/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/booltype.cpp [170/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [809/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [811/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include 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-DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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-o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [821/1040] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -ldl /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 /usr/lib64/liblmfit.so -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 [1032/1040] /usr/bin/cmake -E cmake_symlink_library lib/libgromacs.so.11.0.0 lib/libgromacs.so.11 lib/libgromacs.so && : [1033/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1034/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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/usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1035/1040] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/gmxapi/CMakeFiles/gmxapi.dir/link.d -Wl,-soname,libgmxapi.so.0 -o lib/libgmxapi.so.0.4.0 api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib: lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1036/1040] /usr/bin/cmake -E cmake_symlink_library lib/libgmxapi.so.0.4.0 lib/libgmxapi.so.0 lib/libgmxapi.so && : [1037/1040] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/CMakeFiles/nblib.dir/link.d -Wl,-soname,libnblib_gmx.so.0 -o lib/libnblib_gmx.so.0.1.0 api/nblib/CMakeFiles/nblib.dir/box.cpp.o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib: -lm lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [1038/1040] /usr/bin/cmake -E cmake_symlink_library lib/libnblib_gmx.so.0.1.0 lib/libnblib_gmx.so.0 lib/libnblib_gmx.so && : [1039/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/argon-forces-integration.dir/link.d api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -o bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib && : [1040/1040] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/methane-water-integration.dir/link.d api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -o bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib && : + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich + pushd mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "5.0") -- Found MPI: TRUE (found version "5.0") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.3s) -- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_array.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_array.cpp [5/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/tmpi_malloc.cpp [6/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [141/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.transpose.cpp [142/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/mpich-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [143/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [144/978] 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [661/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biasgrid.cpp [788/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include 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/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [790/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [793/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem 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-Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [794/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [795/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [796/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/clFFT/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [797/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [949/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_mpich.a && : [977/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/mpich/lib lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [978/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_mpich -Wl,-rpath,/usr/lib64/mpich/lib: lib/libgromacs_mpich.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi + pushd openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU=OpenCL + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_GPU=OpenCL -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Selected GPU FFT library - clFFT -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.11 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- GPU support with OpenCL is deprecated. It is still fully supported (and recommended for Apple GPUs). Please use CUDA for running on NVIDIA GPUs and SYCL for running on Intel GPUs, and HIP or SYCL on AMD GPUs. -- Looking for include file OpenCL/cl.h -- Looking for include file OpenCL/cl.h - not found -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "3.0") -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.10 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.4s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/statTimer -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -w -MD -MT src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -MF src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o.d -o src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/clFFT/src/library/generator.stockham.cpp [143/978] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [144/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/errorcodes.cpp [145/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI 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-c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [790/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include 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-Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [797/978] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DCOLVARS_MPI -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi/redhat-linux-build/src/include 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_openmpi.a && : [977/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/openmpi/lib lib/libgromacs_openmpi.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [978/978] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_openmpi -Wl,-rpath,/usr/lib64/openmpi/lib: lib/libgromacs_openmpi.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z '' + cp -al ../regressiontests-2026.3 tests/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n '' ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/tests -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- GROMACS is being built without library MPI support (-DGMX_MPI=no). However MPI is potentially useful for the gmxapi Python API, so we will search for MPI anyway. If this causes problems, disable the check with -DCMAKE_DISABLE_FIND_PACKAGE_MPI=on. -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx' not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_CXX_FOUND CXX) -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test 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src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [147/1006] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [148/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY 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-fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line 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-isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/settle.cpp [788/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [789/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/nnpot/binary_information.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/binary_information.cpp [790/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [791/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include 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src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/electricfield.cpp [792/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/readir.cpp [793/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [794/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [795/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceproviderstate.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [796/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics [797/1006] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/gmxapi/CMakeFiles/gmxapi.dir/link.d -Wl,-soname,libgmxapi_d.so.0 -o lib/libgmxapi_d.so.0.4.0 api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib: lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a && : [1002/1006] /usr/bin/cmake -E cmake_symlink_library lib/libgmxapi_d.so.0.4.0 lib/libgmxapi_d.so.0 lib/libgmxapi_d.so && : [1003/1006] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/CMakeFiles/nblib.dir/link.d -Wl,-soname,libnblib_gmx.so.0 -o lib/libnblib_gmx.so.0.1.0 api/nblib/CMakeFiles/nblib.dir/box.cpp.o api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o api/nblib/CMakeFiles/nblib.dir/topology.cpp.o api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o api/nblib/CMakeFiles/nblib.dir/virials.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib: -lm lib/libgromacs_d.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [1004/1006] /usr/bin/cmake -E cmake_symlink_library lib/libnblib_gmx.so.0.1.0 lib/libnblib_gmx.so.0 lib/libnblib_gmx.so && : [1005/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/argon-forces-integration.dir/link.d api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -o bin/argon-forces-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib && : [1006/1006] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/samples/CMakeFiles/methane-water-integration.dir/link.d api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -o bin/methane-water-integration -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d/redhat-linux-build/lib && : + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p mpich_d + pushd mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z mpich + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n mpich ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "5.0") -- Found MPI: TRUE (found version "5.0") found components: CXX -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.3s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D 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-flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -fopenmp -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp: In member function ‘virtual void gmx::AnalysisDataDisplacementModule::frameFinished(const gmx::AnalysisDataFrameHeader&)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/analysisdata/modules/displacement.cpp:279:13: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 279 | int k = 1; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option 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-Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: 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-Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp: In member function ‘std::pair gmx::TestParticleInsertion::performSingleInsertion(double, int64_t, bool, const gmx::RVec&, t_state*, gmx::MdrunScheduleWorkload*, gmx_wallcycle*, t_nrnb*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdrun/tpi.cpp:497:85: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 497 | t_nrnb* nrnb) | ^ [913/944] 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src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o && /usr/bin/ranlib lib/libgromacs_mpich_d.a && : [943/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=share/template/CMakeFiles/template.dir/link.d share/template/CMakeFiles/template.dir/template.cpp.o -o bin/template -Wl,-rpath,/usr/lib64/mpich/lib lib/libgromacs_mpich_d.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : [944/944] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_mpich_d -Wl,-rpath,/usr/lib64/mpich/lib: lib/libgromacs_mpich_d.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p openmpi_d + pushd openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -z openmpi + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ test -n openmpi ++ echo -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -S .. -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_INSTALL_RPATH=ON -DGMX_BLAS_USER=flexiblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_USE_MUPARSER=EXTERNAL -DGMX_LAPACK_USER=flexiblas -DGMX_USE_RDTSCP=OFF -DGMX_INSTALL_LEGACY_API=ON -DGMX_VERSION_STRING_OF_FORK=Fedora46 -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_USE_HEFFTE=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DGMX_DOUBLE:BOOL=ON -- The C compiler identification is GNU 16.2.1 -- The CXX compiler identification is GNU 16.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.15.0", minimum required is "3.9") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") found components: CXX -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: CXX -- GROMACS library will use OpenMPI 5.0.11 -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST -- Performing Test HAS_WARNING_NO_OLD_STYLE_CAST - Success -- Performing Test HAS_WARNING_NO_CAST_QUAL -- Performing Test HAS_WARNING_NO_CAST_QUAL - Success -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE -- Performing Test HAS_WARNING_NO_SUGGEST_DESTRUCTOR_OVERRIDE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Torch not found. Neural network potential support will be disabled. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - ARM -- Detected build CPU brand - 0xd40 -- Detected build CPU family - 8 -- Detected build CPU model - 1 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd sve -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - not present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - found -- Using external FFT library - FFTW3 -- Checking that user BLAS library flexiblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library flexiblas works -- Looking for cheev_ -- Looking for cheev_ - found -- No image conversion possible without ImageMagick -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Looking for open_memstream -- Looking for open_memstream - found -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Failed -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS C) (Required is at least version "1.10.7") -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/include (found suitable version "11.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (20.2s) -- Generating done (0.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j32 --verbose Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 [1/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/944] /usr/bin/g++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/src/atomic.cpp [3/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -MD -MT src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -MF src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o.d -o src/external/rpc_xdr/CMakeFiles/internal_rpc_xdr.dir/xdr_float.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp: In function ‘bool_t xdr_double(XDR*, double*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:223:17: warning: unused variable ‘ip’ [-Wunused-variable] 223 | int* ip; | ^~ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/rpc_xdr/xdr_float.cpp:224:17: warning: unused variable ‘tmp’ [-Wunused-variable] 224 | int32_t tmp[2]; | ^~~ [4/944] /usr/bin/g++ -DGMX_DOUBLE=1 -isystem /usr/include/openmpi-aarch64 -O2 -flto=auto 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-Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/modularsimulator/propagator.cpp [125/944] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI= -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxConfigureVersionInfo.cmake && /usr/bin/cmake -E touch utility/baseversion-gen.cpp [126/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/awh/biaswriter.cpp [767/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp: In function ‘std::vector makeLJPmeC6GridCorrectionParameters(int, gmx::ArrayRef, LongRangeVdW)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/forcerec.cpp:181:23: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=] 181 | int k = 0; | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [769/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp [772/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp [773/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/plumed/plumedOptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/plumed/plumedOptions.cpp [774/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include 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/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/qmmmforceproviderstate.cpp [775/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/linearalgebra/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/openmpi-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/../external/rpc_xdr -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/colvars -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/plumed -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-stringop-truncation -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::lincs_update_atoms(Lincs*, int, real, ArrayRef, ArrayRef >, ArrayRef, real (*)[3])’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:513:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 513 | #pragma omp master | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp: In function ‘void gmx::do_lincs(ArrayRefWithPadding >, ArrayRefWithPadding >, const real (*)[3], t_pbc*, Lincs*, int, ArrayRef, gmx_domdec_t*, bool, real, bool*, real, ArrayRef >, bool, real (*)[3], gmx_wallcycle*)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdlib/lincs.cpp:1189:19: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp] 1189 | #pragma omp master | ^ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-cast-function-type-strict’ may have been intended to silence earlier diagnostics cc1plus: note: unrecognized command-line option ‘-Wno-suggest-destructor-override’ may have been intended to silence earlier diagnostics [776/944] /usr/bin/g++ -DCOLVARS_MPI -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -Wl,--dependency-file=src/programs/CMakeFiles/gmx.dir/link.d src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o bin/gmx_openmpi_d -Wl,-rpath,/usr/lib64/openmpi/lib: lib/libgromacs_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3.so -lflexiblas -lm -ltng_io /usr/lib64/openmpi/lib/libmpi.so /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl && : In member function ‘performSingleInsertion’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.N8hhji + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + '[' /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT ++ dirname /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + mkdir -p /builddir/build/BUILD/gromacs-2026.3-build + mkdir /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2026.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + pushd serial + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff -- 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Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/exception.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/simulationstate.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/molecules.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nblib.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/topology.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/vector.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so.11.0.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so.11 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs.pc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-hints.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion-gmx.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: 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/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: 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/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_consts.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/nbnxm/opencl/nbnxm_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gather.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_calculate_splines.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_gpu_types.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_program.cl -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_solve.clh -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/opencl/gromacs/ewald/pme_spread.clh -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial_d + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/tpr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/kerneloptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/particlesequencer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/topology.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/basicdefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/interactions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/util.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/traits.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/util/setup.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/integrator.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/nblib/vector.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.11.0.0 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so.11 -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/libgromacs_d.so -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs_d.pc -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/cmake/gromacs_d/gromacs-hints_d.cmake -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/bin/gmx-completion-gmx_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor 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/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/do_fit.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/units.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/functions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/math/utilities.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: 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Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/range.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/enumerationhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/listoflists.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/pleasecite.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/vectypes.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/optionflags.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx_mpich_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: 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/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n mpich + module unload mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-aarch64 + eval $'unset LD_LIBRARY_PATH;\nunset MPI_COMPILER;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset MPI_MAN;\nunset MPI_PYTHON_SITEARCH;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_FORTRAN_MOD_DIR;\nunset MPI_HOME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SYSCONFIG;\nunset MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_PYTHON2_SITEARCH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset LD_LIBRARY_PATH ++ unset MPI_COMPILER ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset MPI_MAN ++ unset MPI_PYTHON_SITEARCH ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SYSCONFIG ++ unset MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-aarch64 + eval $'MPI_COMPILER=\'openmpi-aarch64\'; export MPI_COMPILER;\nLD_LIBRARY_PATH=\'/usr/lib64/openmpi/lib\'; export LD_LIBRARY_PATH;\nMPI_MAN=\'/usr/share/man/openmpi-aarch64\'; export MPI_MAN;\nMANPATH=\'/usr/share/man/openmpi-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/openmpi-aarch64\'; export MPI_INCLUDE;\n_LMFILES_=\'/usr/share/modulefiles/mpi/openmpi-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/openmpi-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/openmpi\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/openmpi\'; export MPI_PYTHON3_SITEARCH;\nMPI_HOME=\'/usr/lib64/openmpi\'; export MPI_HOME;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/openmpi\'; export MPI_FORTRAN_MOD_DIR;\n__MODULES_LMALTNAME=\'mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest\'; export __MODULES_LMALTNAME;\n__MODULES_LMCONFLICT=\'mpi/openmpi-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SUFFIX=\'_openmpi\'; export MPI_SUFFIX;\nMPI_SYSCONFIG=\'/etc/openmpi-aarch64\'; export MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_LIB=\'/usr/lib64/openmpi/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/openmpi/bin\'; export MPI_BIN;\ntest 0;' ++ MPI_COMPILER=openmpi-aarch64 ++ export MPI_COMPILER ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ MPI_MAN=/usr/share/man/openmpi-aarch64 ++ export MPI_MAN ++ MANPATH=/usr/share/man/openmpi-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/openmpi-aarch64 ++ export MPI_INCLUDE ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/openmpi-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/openmpi ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ __MODULES_LMALTNAME='mpi/openmpi-aarch64&as|mpi/default&as|mpi/latest' ++ export __MODULES_LMALTNAME ++ __MODULES_LMCONFLICT='mpi/openmpi-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-aarch64 ++ export MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ PATH=/usr/lib64/openmpi/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/openmpi_d ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ export PATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd openmpi_d + DESTDIR=/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/CMakeLists.txt -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/README -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/template.cpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README.tutor -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/gromacs/top -- Up-to-date: 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/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/options/options.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/version.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/libgromacs_export.h -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/fwd.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/external/boost/stl_interfaces/iterator_interface.hpp -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi_d -- Set non-toolchain portion of runtime path of "/builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx_openmpi_d" to "" -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion.bash -- Installing: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-density.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-current.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-help.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/man/man1/gmx-disre.1 + popd ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + test -n openmpi + module unload mpi/openmpi-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw unload mpi/openmpi-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-aarch64 + eval $'unset MPI_COMPILER;\nunset LD_LIBRARY_PATH;\nunset MPI_MAN;\nMANPATH=\'/usr/share/man:\'; export MANPATH;\nunset MPI_INCLUDE;\nunset _LMFILES_;\nunset LOADEDMODULES;\nunset CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\':/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nunset MPI_PYTHON3_SITEARCH;\nunset MPI_HOME;\nunset MPI_FORTRAN_MOD_DIR;\nunset __MODULES_LMALTNAME;\nunset __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':1\'; export __MODULES_SHARE_MANPATH;\nunset MPI_SUFFIX;\nunset MPI_SYSCONFIG;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nunset MPI_LIB;\nPATH=\'/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nunset MPI_BIN;\ntest 0;' ++ unset MPI_COMPILER ++ unset LD_LIBRARY_PATH ++ unset MPI_MAN ++ MANPATH=/usr/share/man: ++ export MANPATH ++ unset MPI_INCLUDE ++ unset _LMFILES_ ++ unset LOADEDMODULES ++ unset CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_HOME ++ unset MPI_FORTRAN_MOD_DIR ++ unset __MODULES_LMALTNAME ++ unset __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:1 ++ export __MODULES_SHARE_MANPATH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ unset MPI_LIB ++ PATH=/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ unset MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + mkdir -p /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT ~/build/BUILD/gromacs-2026.3-build/BUILDROOT ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + rm .//usr/lib64/mpich/bin/GMXRC .//usr/lib64/mpich/bin/GMXRC.bash .//usr/lib64/mpich/bin/GMXRC.csh .//usr/lib64/mpich/bin/GMXRC.zsh .//usr/lib64/openmpi/bin/GMXRC .//usr/lib64/openmpi/bin/GMXRC.bash .//usr/lib64/openmpi/bin/GMXRC.csh .//usr/lib64/openmpi/bin/GMXRC.zsh .//usr/lib64/mpich/bin/demux.pl .//usr/lib64/mpich/bin/xplor2gmx.pl .//usr/lib64/openmpi/bin/demux.pl .//usr/lib64/openmpi/bin/xplor2gmx.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-gmx_mpich_d.bash .//usr/lib64/mpich/bin/gmx-completion.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-gmx_openmpi_d.bash .//usr/lib64/openmpi/bin/gmx-completion.bash + /usr/bin/find-debuginfo -j32 --strict-build-id -m -i --build-id-seed 2026.3-1.fc46 --unique-debug-suffix -2026.3-1.fc46.aarch64 --unique-debug-src-base gromacs-2026.3-1.fc46.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/gromacs-2026.3-1.fc46.aarch64 cpio: mpich/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: mpich/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: mpich_d/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: openmpi/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: openmpi_d/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: serial/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/parser.h: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/parser.y: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/scanner.l: Cannot stat: No such file or directory cpio: serial_d/redhat-linux-build/scanner_flex.h: Cannot stat: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/g_xplor2gmx.pl from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/bin/g_demux.pl from /usr/bin/env perl to #!/usr/bin/perl + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j32 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j32 /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT Scanned 284 directories and 2782 files, processed 102 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/gromacs-2026.3-build/BUILDROOT/usr Scanned 283 directories and 2782 files, considered 2772 files, read 883 files, linked 361 files, 0 errors sum of sizes of linked files: 2336602 bytes Reading /builddir/build/BUILD/gromacs-2026.3-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.x3KgOp + umask 022 + cd /builddir/build/BUILD/gromacs-2026.3-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd gromacs-2026.3 + . /etc/profile.d/modules.sh ++ '[' -n /bin/sh ']' ++ '[' sh = sh ']' ++ shell=sh ++ '[' -f /usr/share/Modules/init/sh ']' ++ . /usr/share/Modules/init/sh +++ unset _mlshdbg +++ '[' 0 = 1 ']' +++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD' +++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD' +++ unset _mlre _mlIFS +++ '[' -n x ']' +++ _mlIFS=$' \t\n' +++ IFS=' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' +++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']' ++++ eval 'echo ${LD_LIBRARY_PATH+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH ++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' ' +++ for _mlv in ${MODULES_RUN_QUARANTINE:-} +++ '[' LD_PRELOAD = LD_PRELOAD ']' +++ '[' LD_PRELOAD = LD_PRELOAD ']' ++++ eval 'echo ${LD_PRELOAD+x}' +++++ echo +++ '[' -n '' ']' +++ _mlrv=MODULES_RUNENV_LD_PRELOAD ++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}' +++++ echo +++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' +++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']' +++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 ' ++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++++ LD_LIBRARY_PATH= +++++ LD_PRELOAD= +++++ __MODULES_QUARANTINE_SET=1 +++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit +++ _mlcode=$'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' +++ _mlret=0 +++ '[' -n x ']' +++ IFS=$' \t\n' +++ unset _mlIFS +++ unset _mlre _mlv _mlrv +++ '[' 0 -eq 0 ']' +++ eval $'_module_raw() {\n eval "$(/usr/bin/tclsh \'/usr/share/Modules/libexec/modulecmd.tcl\' sh "$@")";\n _mlstatus=$?;\n return $_mlstatus;\n};\nmodule() {\n local _mlredir=0;\n if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then\n if [ "$MODULES_REDIRECT_OUTPUT" = \'0\' ]; then\n _mlredir=0;\n elif [ "$MODULES_REDIRECT_OUTPUT" = \'1\' ]; then\n _mlredir=1;\n fi;\n fi;\n case " $@ " in\n *\' --no-redirect \'*) _mlredir=0 ;;\n *\' --redirect \'*) _mlredir=1 ;;\n esac;\n if [ $_mlredir -eq 0 ]; then\n _module_raw "$@";\n else\n _module_raw "$@" 2>&1;\n fi;\n};\nml() { module ml "$@"; };\nMODULES_CMD=\'/usr/share/Modules/libexec/modulecmd.tcl\'; export MODULES_CMD;\nunset __MODULES_AUTOINIT_INPROGRESS;\nMODULESHOME=\'/usr/share/Modules\'; export MODULESHOME;\ntest 0;' ++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl ++++ export MODULES_CMD ++++ unset __MODULES_AUTOINIT_INPROGRESS ++++ MODULESHOME=/usr/share/Modules ++++ export MODULESHOME ++++ test 0 +++ '[' /bin/sh '!=' '' ']' +++ export -f _module_raw +++ export -f module ++++ type -t ml +++ '[' function = function ']' +++ export -f ml +++ unset _mlcode _mlret +++ '[' -n '' ']' + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + pushd serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + [[ '' = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j32 --verbose --target tests Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 tests [1/678] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake [2/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/mpi_printer.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/mpi_printer.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/mpi_printer.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/mpi_printer.cpp [3/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -MD -MT src/external/thread_mpi/test/CMakeFiles/mpithreads.dir/cycles.cpp.o -MF src/external/thread_mpi/test/CMakeFiles/mpithreads.dir/cycles.cpp.o.d -o src/external/thread_mpi/test/CMakeFiles/mpithreads.dir/cycles.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/test/cycles.cpp [4/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/setenv.cpp [5/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include 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-mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -MF src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o.d -o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/tests/qmmminputgenerator.cpp [206/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/nnpot/tests\" 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/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-stringop-truncation -MD -MT src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o -MF src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o.d -o src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/nnpot/tests/nnpotforceprovider.cpp [207/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o -MF src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o.d -o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp: In function ‘std::pair gmx::test::{anonymous}::combineLJParams(real, real, real, real, gmx::LJCombinationRule)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp:94:80: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 94 | const LJCombinationRule ljCombinationRule) | ^ [208/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/qmmm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/applied_forces/qmmm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -MF src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o.d -o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [209/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied_forces/densityfitting/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/applied_forces/densityfitting/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -MF src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o.d -o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/densityfitting/tests/densityfittingoptions.cpp [210/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem 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src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/mdspan/tests/accessor_policy.cpp [290/668] : && /usr/bin/cmake -E rm -f lib/libonlinehelp-test-shared.a && /usr/bin/ar qc lib/libonlinehelp-test-shared.a src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o && /usr/bin/ranlib lib/libonlinehelp-test-shared.a && : [291/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -MF src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o.d -o src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/tests/neldermead.cpp [294/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdspan/tests\" 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/unittest_main.cpp [401/668] /usr/bin/g++ -DAMBER=0 -DCHARMM=0 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=1 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-mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/unittest_main.cpp [403/668] /usr/bin/g++ -DAMBER=1 -DCHARMM=1 -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGROMOS=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DOPLSAA=0 -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -MF src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o.d -o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp: In function ‘gmx::test::SimdMathTest::generateTestPointsTest()’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp:309:32: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 309 | result = generateTestPoints({ -1e10, -1 }, points); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [427/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src 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src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o.d -o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tests/timecontrol.cpp [469/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects 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-DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tools/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/tools/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -MF src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o.d -o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/tools/tests/report_methods.cpp [471/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -MF src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o.d -o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tests/tngio.cpp [472/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -MF src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o.d -o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/unittest_main.cpp [473/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/gromacs/fileio/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/serialization/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -MF src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o.d -o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/fileio/tests/checkpoint.cpp [474/668] : && /usr/bin/cmake -E rm -f lib/libmdrun_test_infrastructure.a && /usr/bin/ar qc lib/libmdrun_test_infrastructure.a src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o && /usr/bin/ranlib lib/libmdrun_test_infrastructure.a && : [475/668] /usr/bin/g++ 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src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/periodicactions.cpp [565/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem 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/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/periodicactions_coupling.cpp [566/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/workflow.cpp.o api/gmxapi/cpp/workflow/tests/CMakeFiles/workflow-details-test.dir/__/__/__/__/__/src/testutils/unittest_main.cpp.o -o bin/workflow-details-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgmxapi.so.0.4.0 lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [567/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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-DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/taskassignment/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem 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-fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/pmetest.cpp [570/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [581/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=api/nblib/tests/CMakeFiles/nblib-setup-test.dir/link.d 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src/gromacs/utility/tests/CMakeFiles/mpicomm-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mpicomm-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [583/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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lib/libtestutils.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [585/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/testutils/tests/CMakeFiles/testutils-test.dir/link.d src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/naming.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/posixmemstream.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o bin/testutils-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [586/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/link.d src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/plumed_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [587/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/link.d src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvars.cpp.o src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsoptions.cpp.o src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarspreprocessor.cpp.o src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/colvarsforceprovider.cpp.o src/gromacs/applied_forces/colvars/tests/CMakeFiles/colvars_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/colvars_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [588/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/link.d src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/density_fitting_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [589/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/link.d src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmminputgenerator.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmtopologypreprocessor.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceproviderstate.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmforceprovider.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmm.cpp.o src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/qmmm_applied_forces-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [590/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/pull_rotation.cpp [591/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nbnxm-gpu-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [592/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/link.d src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/awh-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [593/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/virtualsites.cpp [594/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/plainpairlist.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nbnxm-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp: In function ‘combineLJParams’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp:123:28: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 123 | combineLJParams(sigmaO, epsilonO, sigmaO, epsilonO, ljCombinationRule); | ^ [595/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-simulator-comparison-test.dir/simulator.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/simulator.cpp [596/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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-Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [612/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/link.d src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrunutility-mpi-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrunutility-test-shared.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [614/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/link.d src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o 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src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/taskassignment-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [627/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/topology/tests/CMakeFiles/topology-test.dir/link.d src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/topology-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [628/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/link.d src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [629/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/options/tests/CMakeFiles/options-test.dir/link.d src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/options-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [630/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/expandedensemble.cpp [631/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/simd/tests/CMakeFiles/simd-test.dir/link.d src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/generate_test_points.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/simd-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘compareSimdMathFunction.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp:202:87: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 202 | std::vector testPoints = generateTestPoints(compareSettings.range, s_nPoints); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp: In function ‘generateTestPoints’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp:53:19: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::vector generateTestPoints(RealRange inputRange, std::size_t inputPoints) | ^ [632/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/link.d src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/correlations-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [633/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/link.d src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmxanatestbase.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rms.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rmsdist.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rmsf.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_sorient.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rotmat.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_saltbr.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gmxana-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [634/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/link.d src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/tool-test-with-leaks -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [635/668] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DGTEST_LINKED_AS_SHARED_LIBRARY=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [636/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx1-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [637/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx3-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [638/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx2-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [639/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gmxpreprocess-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [641/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisim.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/multisimtest.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-multisim-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [642/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/link.d src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/coordinateio-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libgromacs.so.11.0.0 lib/libgmock.so.1.17.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgtest.so.1.17.0 && : [643/668] /usr/bin/g++ 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src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/trajectory_writing.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-output-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-output-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [653/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG 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lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [654/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes 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src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/orires.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-single-rank-algorithms-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-single-rank-algorithms-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [656/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer 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lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [657/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes 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src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/initialconstraints.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/termination.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-io-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-io-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [659/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/minimize.cpp.o src/programs/mdrun/tests/CMakeFiles/minimize-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/minimize-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [661/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection 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-Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [662/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/pmetest.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-pme-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-mpi-pme-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.5 && : [663/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/periodicactions_basic.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-coordination-basic-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-coordination-basic-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [664/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/pull_rotation.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-rotation-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-rotation-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [665/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/virtualsites.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-vsites-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-vsites-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [666/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/freeenergy.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-fep-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [667/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/multisimtest.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-multisim-replex-equivalence-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : [668/668] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/link.d src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrun-pull-test -Wl,-rpath,/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build/lib lib/libtestutils.a lib/libmdrun_test_infrastructure.a lib/libtestutils.a lib/libgromacs.so.11.0.0 -lm /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a lib/libgmock.so.1.17.0 lib/libgtest.so.1.17.0 && : + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j32 --exclude-regex '(regressiontests/complex|GmxAnaTest)' Test project /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/serial/redhat-linux-build Start 90: MdrunMpi1RankPmeTests Start 77: MdrunModulesTests Start 79: MdrunTestsOneRank Start 82: Minimize1RankTests Start 93: MdrunCoordinationBasicTests1Rank Start 95: MdrunCoordinationCouplingTests1Rank Start 97: MdrunCoordinationConstraintsTests1Rank Start 1: GmxapiExternalInterfaceTests Start 2: GmxapiInternalInterfaceTests Start 3: NbLibListedForcesTests Start 4: NbLibSamplesTestArgon Start 5: NbLibSamplesTestMethaneWater Start 6: NbLibUtilTests Start 7: NbLibSetupTests Start 8: NbLibTprTests Start 9: NbLibIntegrationTests Start 10: NbLibIntegratorTests Start 11: threadMPI-mpithreads Start 12: threadMPI-sync_cyclecount Start 13: threadMPI-mpi_speedtest 1/104 Test #93: MdrunCoordinationBasicTests1Rank .......... Passed 0.02 sec 2/104 Test #95: MdrunCoordinationCouplingTests1Rank ....... Passed 0.02 sec 3/104 Test #97: MdrunCoordinationConstraintsTests1Rank .... Passed 0.01 sec 4/104 Test #12: threadMPI-sync_cyclecount ................. Passed 0.00 sec Start 14: threadMPI-notmpi Start 15: threadMPI-alloc_check 5/104 Test #4: NbLibSamplesTestArgon ..................... Passed 0.01 sec 6/104 Test #13: threadMPI-mpi_speedtest ................... Passed 0.00 sec Start 16: TestUtilsUnitTests Start 17: TestUtilsMpiUnitTests Start 18: UtilityUnitTests 7/104 Test #14: threadMPI-notmpi .......................... Passed 0.01 sec Start 20: UtilityMpiUnitTests Start 21: MdlibUnitTest 8/104 Test #15: threadMPI-alloc_check ..................... Passed 0.01 sec 9/104 Test #5: NbLibSamplesTestMethaneWater .............. Passed 0.02 sec 10/104 Test #6: NbLibUtilTests ............................ Passed 0.02 sec Start 19: MpiCommTests Start 22: AwhTest 11/104 Test #10: NbLibIntegratorTests ...................... Passed 0.02 sec Start 23: DensityFittingAppliedForcesUnitTest 12/104 Test #9: NbLibIntegrationTests ..................... Passed 0.02 sec Start 24: QMMMAppliedForcesUnitTest 13/104 Test #3: NbLibListedForcesTests .................... Passed 0.03 sec Start 25: ColvarsAppliedForcesUnitTest 14/104 Test #7: NbLibSetupTests ........................... Passed 0.02 sec Start 26: PlumedAppliedForcesUnitTests 15/104 Test #17: TestUtilsMpiUnitTests ..................... Passed 0.02 sec Start 27: PlumedMDTests Start 28: NNPotAppliedForcesUnitTest 16/104 Test #16: TestUtilsUnitTests ........................ Passed 0.02 sec 17/104 Test #20: UtilityMpiUnitTests ....................... Passed 0.02 sec Start 29: AppliedForcesUnitTest Start 30: ListedForcesTest Start 32: NbnxmGpuTests 18/104 Test #23: DensityFittingAppliedForcesUnitTest ....... Passed 0.02 sec Start 33: GmxlibTests 19/104 Test #18: UtilityUnitTests .......................... Passed 0.02 sec Start 34: GmxlibGpuTests 20/104 Test #19: MpiCommTests .............................. Passed 0.02 sec Start 31: NbnxmTests Start 35: CommandLineUnitTests Start 36: DomDecTests 21/104 Test #8: NbLibTprTests ............................. Passed 0.04 sec Start 38: EwaldUnitTests 22/104 Test #29: AppliedForcesUnitTest ..................... Passed 0.02 sec Start 39: FFTUnitTests 23/104 Test #27: PlumedMDTests ............................. Passed 0.03 sec Start 40: FmmInterfaceUnitTests 24/104 Test #36: DomDecTests ............................... Passed 0.02 sec Start 41: GpuUtilsUnitTests 25/104 Test #33: GmxlibTests ............................... Passed 0.02 sec 26/104 Test #32: NbnxmGpuTests ............................. Passed 0.03 sec 27/104 Test #35: CommandLineUnitTests ...................... Passed 0.02 sec Start 42: GpuUtilsMpiTests Start 43: HardwareUnitTests 28/104 Test #24: QMMMAppliedForcesUnitTest ................. Passed 0.04 sec 29/104 Test #30: ListedForcesTest .......................... Passed 0.03 sec Start 44: MathUnitTests Start 45: MdrunUtilityUnitTests 30/104 Test #22: AwhTest ................................... Passed 0.05 sec 31/104 Test #34: GmxlibGpuTests ............................ Passed 0.03 sec Start 47: MDSpanTests Start 48: MdtypesUnitTest 32/104 Test #40: FmmInterfaceUnitTests ..................... Passed 0.02 sec Start 49: OnlineHelpUnitTests 33/104 Test #25: ColvarsAppliedForcesUnitTest .............. Passed 0.06 sec Start 50: OptionsUnitTests 34/104 Test #47: MDSpanTests ............................... Passed 0.02 sec Start 51: PbcutilUnitTest 35/104 Test #41: GpuUtilsUnitTests ......................... Passed 0.03 sec 36/104 Test #45: MdrunUtilityUnitTests ..................... Passed 0.02 sec Start 52: RandomUnitTests Start 53: RestraintTests 37/104 Test #90: MdrunMpi1RankPmeTests ..................... Passed 0.11 sec Start 54: SerializationUnitTests Start 55: TableUnitTests 38/104 Test #42: GpuUtilsMpiTests .......................... Passed 0.04 sec 39/104 Test #48: MdtypesUnitTest ........................... Passed 0.03 sec 40/104 Test #49: OnlineHelpUnitTests ....................... Passed 0.02 sec 41/104 Test #39: FFTUnitTests .............................. Passed 0.05 sec Start 91: MdrunMpi2RankPmeTests Start 56: TaskAssignmentUnitTests 42/104 Test #50: OptionsUnitTests .......................... Passed 0.02 sec Start 57: GmxTimingTests 43/104 Test #51: PbcutilUnitTest ........................... Passed 0.02 sec 44/104 Test #53: RestraintTests ............................ Passed 0.02 sec Start 58: TopologyTest Start 59: PullTest 45/104 Test #52: RandomUnitTests ........................... Passed 0.02 sec 46/104 Test #28: NNPotAppliedForcesUnitTest ................ Passed 0.09 sec 47/104 Test #54: SerializationUnitTests .................... Passed 0.02 sec Start 60: SimdUnitTests Start 61: CompatibilityHelpersTests Start 62: GmxPreprocessTests 48/104 Test #56: TaskAssignmentUnitTests ................... Passed 0.02 sec Start 63: Pdb2gmx1Test 49/104 Test #44: MathUnitTests ............................. Passed 0.06 sec Start 64: Pdb2gmx2Test 50/104 Test #57: GmxTimingTests ............................ Passed 0.02 sec Start 65: Pdb2gmx3Test 51/104 Test #43: HardwareUnitTests ......................... Passed 0.07 sec Start 66: CorrelationsTest 52/104 Test #59: PullTest .................................. Passed 0.02 sec Start 67: AnalysisDataUnitTests 53/104 Test #61: CompatibilityHelpersTests ................. Passed 0.02 sec Start 68: CoordinateIOTests 54/104 Test #58: TopologyTest .............................. Passed 0.03 sec Start 69: TrajectoryAnalysisUnitTests 55/104 Test #60: SimdUnitTests ............................. Passed 0.03 sec Start 70: EnergyAnalysisUnitTests 56/104 Test #55: TableUnitTests ............................ Passed 0.05 sec Start 71: ToolUnitTests 57/104 Test #26: PlumedAppliedForcesUnitTests .............. Passed 0.13 sec Start 72: ToolWithLeaksUnitTests 58/104 Test #67: AnalysisDataUnitTests ..................... Passed 0.03 sec Start 73: H5mdTests 59/104 Test #73: H5mdTests ................................. Passed 0.02 sec Start 74: FileIOTests 60/104 Test #68: CoordinateIOTests ......................... Passed 0.05 sec Start 75: SelectionUnitTests 61/104 Test #77: MdrunModulesTests ......................... Passed 0.19 sec Start 76: MdrunOutputTests 62/104 Test #38: EwaldUnitTests ............................ Passed 0.15 sec Start 85: MdrunTpiTests 63/104 Test #2: GmxapiInternalInterfaceTests .............. Passed 0.21 sec Start 78: MdrunIOTests 64/104 Test #74: FileIOTests ............................... Passed 0.03 sec 65/104 Test #70: EnergyAnalysisUnitTests ................... Passed 0.11 sec Start 81: MdrunSingleRankAlgorithmsTests 66/104 Test #91: MdrunMpi2RankPmeTests ..................... Passed 0.17 sec Start 37: DomDecMpiTests 67/104 Test #75: SelectionUnitTests ........................ Passed 0.11 sec 68/104 Test #37: DomDecMpiTests ............................ Passed 0.03 sec Start 46: MdrunUtilityMpiUnitTests 69/104 Test #76: MdrunOutputTests .......................... Passed 0.16 sec Start 84: MdrunNonIntegratorTests 70/104 Test #46: MdrunUtilityMpiUnitTests .................. Passed 0.05 sec Start 86: MdrunMpiTests 71/104 Test #78: MdrunIOTests .............................. Passed 0.16 sec Start 94: MdrunCoordinationBasicTests2Ranks 72/104 Test #84: MdrunNonIntegratorTests ................... Passed 0.03 sec Start 96: MdrunCoordinationCouplingTests2Ranks 73/104 Test #72: ToolWithLeaksUnitTests .................... Passed 0.22 sec Start 98: MdrunCoordinationConstraintsTests2Ranks 74/104 Test #31: NbnxmTests ................................ Passed 0.34 sec Start 99: MdrunFEPTests 75/104 Test #94: MdrunCoordinationBasicTests2Ranks ......... Passed 0.02 sec Start 100: MdrunPullTests 76/104 Test #96: MdrunCoordinationCouplingTests2Ranks ...... Passed 0.02 sec Start 101: MdrunRotationTests 77/104 Test #98: MdrunCoordinationConstraintsTests2Ranks ... Passed 0.02 sec Start 102: MdrunSimulatorComparison 78/104 Test #66: CorrelationsTest .......................... Passed 0.27 sec 79/104 Test #102: MdrunSimulatorComparison .................. Passed 0.02 sec Start 103: MdrunVirtualSiteTests 80/104 Test #99: MdrunFEPTests ............................. Passed 0.07 sec 81/104 Test #82: Minimize1RankTests ........................ Passed 0.50 sec Start 83: Minimize2RankTests 82/104 Test #101: MdrunRotationTests ........................ Passed 0.10 sec 83/104 Test #86: MdrunMpiTests ............................. Passed 0.16 sec Start 87: MdrunMultiSimTests 84/104 Test #85: MdrunTpiTests ............................. Passed 0.33 sec Start 88: MdrunMultiSimReplexTests 85/104 Test #87: MdrunMultiSimTests ........................ Passed 0.03 sec Start 89: MdrunMultiSimReplexEquivalenceTests 86/104 Test #88: MdrunMultiSimReplexTests .................. Passed 0.03 sec Start 92: MdrunMpi4RankPmeTests 87/104 Test #89: MdrunMultiSimReplexEquivalenceTests ....... Passed 0.02 sec 88/104 Test #81: MdrunSingleRankAlgorithmsTests ............ Passed 0.36 sec 89/104 Test #103: MdrunVirtualSiteTests ..................... Passed 0.19 sec 90/104 Test #62: GmxPreprocessTests ........................ Passed 0.56 sec 91/104 Test #92: MdrunMpi4RankPmeTests ..................... Passed 0.16 sec 92/104 Test #63: Pdb2gmx1Test .............................. Passed 0.64 sec 93/104 Test #1: GmxapiExternalInterfaceTests .............. Passed 0.83 sec 94/104 Test #71: ToolUnitTests ............................. Passed 0.72 sec 95/104 Test #100: MdrunPullTests ............................ Passed 0.52 sec 96/104 Test #83: Minimize2RankTests ........................ Passed 0.46 sec 97/104 Test #64: Pdb2gmx2Test .............................. Passed 0.85 sec 98/104 Test #79: MdrunTestsOneRank ......................... Passed 1.06 sec Start 80: MdrunTestsTwoRanks 99/104 Test #65: Pdb2gmx3Test .............................. Passed 1.57 sec 100/104 Test #21: MdlibUnitTest ............................. Passed 1.70 sec 101/104 Test #80: MdrunTestsTwoRanks ........................ Passed 0.99 sec 102/104 Test #69: TrajectoryAnalysisUnitTests ............... Passed 4.48 sec 103/104 Test #11: threadMPI-mpithreads ...................... Passed 7.35 sec Start 104: regressiontests/essentialdynamics 104/104 Test #104: regressiontests/essentialdynamics ......... Passed 0.96 sec 100% tests passed, 0 tests failed out of 104 Label Time Summary: GTest = 31.65 sec*proc (96 tests) IntegrationTest = 17.49 sec*proc (29 tests) MpiTest = 12.45 sec*proc (24 tests) QuickGpuTest = 10.79 sec*proc (25 tests) SlowGpuTest = 10.00 sec*proc (16 tests) SlowTest = 9.25 sec*proc (14 tests) UnitTest = 4.91 sec*proc (53 tests) Total Test time (real) = 8.33 sec + [[ '' = openmpi ]] ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 + popd + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-aarch64 + local _mlredir=0 + '[' -n '' ']' + case " $@ " in + '[' 0 -eq 0 ']' + _module_raw load mpi/mpich-aarch64 ++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-aarch64 + eval $'LD_LIBRARY_PATH=\'/usr/lib64/mpich/lib\'; export LD_LIBRARY_PATH;\nMPI_COMPILER=\'mpich-aarch64\'; export MPI_COMPILER;\nMANPATH=\'/usr/share/man/mpich-aarch64:/usr/share/man:\'; export MANPATH;\nMPI_INCLUDE=\'/usr/include/mpich-aarch64\'; export MPI_INCLUDE;\nMPI_MAN=\'/usr/share/man/mpich-aarch64\'; export MPI_MAN;\nMPI_PYTHON_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON_SITEARCH;\n_LMFILES_=\'/usr/share/modulefiles/mpi/mpich-aarch64\'; export _LMFILES_;\nLOADEDMODULES=\'mpi/mpich-aarch64\'; export LOADEDMODULES;\nCMAKE_PREFIX_PATH=\'/usr/lib64/mpich\'; export CMAKE_PREFIX_PATH;\nPKG_CONFIG_PATH=\'/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig\'; export PKG_CONFIG_PATH;\nMPI_PYTHON3_SITEARCH=\'/usr/lib64/python3.15/site-packages/mpich\'; export MPI_PYTHON3_SITEARCH;\nMPI_FORTRAN_MOD_DIR=\'/usr/lib64/gfortran/modules/mpich\'; export MPI_FORTRAN_MOD_DIR;\nMPI_HOME=\'/usr/lib64/mpich\'; export MPI_HOME;\n__MODULES_LMCONFLICT=\'mpi/mpich-aarch64&mpi\'; export __MODULES_LMCONFLICT;\n__MODULES_SHARE_MANPATH=\':2\'; export __MODULES_SHARE_MANPATH;\nMPI_SYSCONFIG=\'/etc/mpich-aarch64\'; export MPI_SYSCONFIG;\nMPI_SUFFIX=\'_mpich\'; export MPI_SUFFIX;\n__MODULES_SHARE_PKG_CONFIG_PATH=\':1\'; export __MODULES_SHARE_PKG_CONFIG_PATH;\nMPI_PYTHON2_SITEARCH=\'%{python2_sitearch}/mpich\'; export MPI_PYTHON2_SITEARCH;\nMPI_LIB=\'/usr/lib64/mpich/lib\'; export MPI_LIB;\nPATH=\'/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin\'; export PATH;\nMPI_BIN=\'/usr/lib64/mpich/bin\'; export MPI_BIN;\ntest 0;' ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ MPI_COMPILER=mpich-aarch64 ++ export MPI_COMPILER ++ MANPATH=/usr/share/man/mpich-aarch64:/usr/share/man: ++ export MANPATH ++ MPI_INCLUDE=/usr/include/mpich-aarch64 ++ export MPI_INCLUDE ++ MPI_MAN=/usr/share/man/mpich-aarch64 ++ export MPI_MAN ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-aarch64 ++ export _LMFILES_ ++ LOADEDMODULES=mpi/mpich-aarch64 ++ export LOADEDMODULES ++ CMAKE_PREFIX_PATH=/usr/lib64/mpich ++ export CMAKE_PREFIX_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich ~/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.15/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ __MODULES_LMCONFLICT='mpi/mpich-aarch64&mpi' ++ export __MODULES_LMCONFLICT ++ __MODULES_SHARE_MANPATH=:2 ++ export __MODULES_SHARE_MANPATH ++ MPI_SYSCONFIG=/etc/mpich-aarch64 ++ export MPI_SYSCONFIG ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ __MODULES_SHARE_PKG_CONFIG_PATH=:1 ++ export __MODULES_SHARE_PKG_CONFIG_PATH ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ PATH=/usr/lib64/mpich/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin ++ export PATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ test 0 + _mlstatus=0 + return 0 + pushd mpich + [[ mpich = openmpi ]] + /usr/bin/cmake --build redhat-linux-build -j32 --verbose --target tests Change Dir: '/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 32 tests [1/598] cd /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 && /usr/bin/cmake -D PYTHON_EXECUTABLE=/usr/bin/python3.15 -D PROJECT_VERSION=2026.3-Fedora46 -D PROJECT_SOURCE_DIR=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3 -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/VersionInfo.cmake -D VERSION_STRING_OF_FORK=Fedora46 -P /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/cmake/gmxGenerateVersionInfoWithoutGit.cmake 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-fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/setenv.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/setenv.cpp [3/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testoptions.cpp [4/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/tinyxml2 -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/testutils/CMakeFiles/testutils.dir/test_device.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/test_device.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/test_device.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/test_device.cpp [5/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY 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-fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -fopenmp -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -MD -MT src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o -MF src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o.d -o src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/filematchers.cpp [6/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src 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src/gromacs/applied_forces/qmmm/tests/CMakeFiles/qmmm_applied_forces-test.dir/qmmmoptions.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/applied_forces/qmmm/tests/qmmmoptions.cpp [153/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/nbnxm/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs/nbnxm/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -MF src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o.d -o src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/domdec/tests/haloexchange_mpi.cpp [210/595] : && /usr/bin/cmake -E rm -f lib/libmdrunutility-test-shared.a && /usr/bin/ar qc lib/libmdrunutility-test-shared.a src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o && /usr/bin/ranlib lib/libmdrunutility-test-shared.a && : [211/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pbcutil/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/pulling/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/timing/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem 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src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -MF src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o.d -o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/ewald/tests/pmesplinespreadtest.cpp [213/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs/math/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem 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src/gromacs/simd/tests/CMakeFiles/simd-test.dir/generate_test_points.cpp.o.d -o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/generate_test_points.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp: In function ‘std::vector gmx::test::generateTestPoints(RealRange, std::size_t)’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp:53:19: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::vector generateTestPoints(RealRange inputRange, std::size_t inputPoints) | ^~~~~~~~~~~~~~~~~~ [294/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/topology/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -MF src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o.d -o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/gmxpreprocess/tests/genion.cpp [339/595] : && /usr/bin/cmake -E rm -f lib/libanalysisdata-test-shared.a && /usr/bin/ar qc lib/libanalysisdata-test-shared.a src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/__/__/__/testutils/unittest_main.cpp.o && /usr/bin/ranlib lib/libanalysisdata-test-shared.a && : [340/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 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src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energyreader.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/energycomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/moduletest.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/simulatorcomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/terminationhelper.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/trajectorycomparison.cpp.o src/programs/mdrun/tests/CMakeFiles/mdrun_test_infrastructure.dir/__/__/__/testutils/unittest_main.cpp.o && /usr/bin/ranlib lib/libmdrun_test_infrastructure.a && : [415/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" 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-I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-fep-test.dir/expandedensemble.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/expandedensemble.cpp [512/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/pairlist.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nbnxm-gpu-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [513/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/fft/tests/CMakeFiles/fft-test.dir/link.d src/gromacs/fft/tests/CMakeFiles/fft-test.dir/fft.cpp.o src/gromacs/fft/tests/CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/fft-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [514/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-mpi-test.dir/link.d src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-mpi-test.dir/gpu_aware_mpi.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gpu_utils-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [515/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/link.d src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/fmm_mdpoptions.cpp.o src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/fmm_mdpvalidator.cpp.o src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/fmmforceprovider.cpp.o src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/fmmforceproviderbuilder.cpp.o src/gromacs/fmm/tests/CMakeFiles/fmm-interface-tests.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/fmm-interface-tests -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [516/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-multisim-replex-equivalence-test.dir/replicaexchange_equivalence.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/replicaexchange_equivalence.cpp [517/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/link.d src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/cpuinfo.cpp.o src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/mockhardwaretopology.cpp.o src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/device_management.cpp.o src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/hardware-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [518/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/link.d src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/mdmodulesnotifier.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/plainpairlistranges.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrunutility-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libmdrunutility-test-shared.a lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libgmock.a lib/libgtest.a && : [519/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/link.d src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/clfftinitializer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_availability.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_stream_manager.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/pinnedmemorychecker.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/devicetransfers_ocl.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/device_buffer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/gpueventsynchronizer.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/typecasts.cpp.o src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gpu_utils-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [520/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/link.d src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity_mpi.cpp.o src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdrunutility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libmdrunutility-test-shared.a lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libgmock.a lib/libgtest.a && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [521/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/link.d src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/accessor_policy.cpp.o src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extents.cpp.o src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/extensions.cpp.o src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/layouts.cpp.o src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/mdspan.cpp.o src/gromacs/mdspan/tests/CMakeFiles/mdspan-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdspan-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [522/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/link.d src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/onlinehelp-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libonlinehelp-test-shared.a lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libgmock.a lib/libgtest.a && : [523/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/link.d src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/manager.cpp.o src/gromacs/restraint/tests/CMakeFiles/restraintpotential-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/restraintpotential-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [524/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/link.d src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/com.cpp.o src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/mshift.cpp.o src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbc.cpp.o src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/pbcenums.cpp.o src/gromacs/pbcutil/tests/CMakeFiles/pbcutil-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pbcutil-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [525/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/serialization/tests/CMakeFiles/serialization-test.dir/link.d src/gromacs/serialization/tests/CMakeFiles/serialization-test.dir/inmemoryserializer.cpp.o src/gromacs/serialization/tests/CMakeFiles/serialization-test.dir/keyvaluetreeserializer.cpp.o src/gromacs/serialization/tests/CMakeFiles/serialization-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/serialization-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [526/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/math/tests/CMakeFiles/math-test.dir/link.d src/gromacs/math/tests/CMakeFiles/math-test.dir/arrayrefwithpadding.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/boxmatrix.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/complex.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/coordinatetransformation.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfit.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/dofit.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/exponentialmovingaverage.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/functions.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/gausstransform.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/densityfittingforce.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/invertmatrix.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/matrix.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/multidimarray.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/neldermead.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/optimization.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/paddedvector.cpp.o src/gromacs/math/tests/CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/math-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [527/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/tables/tests/CMakeFiles/table-test.dir/link.d src/gromacs/tables/tests/CMakeFiles/table-test.dir/splinetable.cpp.o src/gromacs/tables/tests/CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/table-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [528/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/link.d src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmegathertest.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pme.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/ewald-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [529/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/link.d src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/enerdata.cpp.o src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/observablesreducer.cpp.o src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/checkpointdata.cpp.o src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/forcebuffers.cpp.o src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/multipletimestepping.cpp.o src/gromacs/mdtypes/tests/CMakeFiles/mdtypes-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mdtypes-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [530/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/timing/tests/CMakeFiles/timing-test.dir/link.d src/gromacs/timing/tests/CMakeFiles/timing-test.dir/timing.cpp.o src/gromacs/timing/tests/CMakeFiles/timing-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/timing-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [531/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/options/tests/CMakeFiles/options-test.dir/link.d src/gromacs/options/tests/CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoption.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/option.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/optionsassigner.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/repeatingsection.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/timeunitmanager.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/treesupport.cpp.o src/gromacs/options/tests/CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/options-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [532/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/random/tests/CMakeFiles/random-test.dir/link.d src/gromacs/random/tests/CMakeFiles/random-test.dir/exponentialdistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/gammadistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/normaldistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/seed.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/threefry.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformintdistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o src/gromacs/random/tests/CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/random-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [533/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/compat/tests/CMakeFiles/compat-test.dir/link.d src/gromacs/compat/tests/CMakeFiles/compat-test.dir/mp11.cpp.o src/gromacs/compat/tests/CMakeFiles/compat-test.dir/pointers.cpp.o src/gromacs/compat/tests/CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/compat-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [534/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/link.d src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/taskassignment-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [535/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects 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src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/pull.cpp.o src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pull-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [536/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx2-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx2-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [537/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx1-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx1-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [538/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/pdb2gmx.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/pdb2gmx3-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/pdb2gmx3-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [539/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/link.d src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/autocorr.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/correlationdataset.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/expfit.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/correlations-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [540/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/simd/tests/CMakeFiles/simd-test.dir/link.d src/gromacs/simd/tests/CMakeFiles/simd-test.dir/base.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/generate_test_points.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_util.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/scalar_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_integer.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_memory.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_math.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o src/gromacs/simd/tests/CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/simd-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp: In function ‘generateTestPoints’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/generate_test_points.cpp:53:19: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 53 | std::vector generateTestPoints(RealRange inputRange, std::size_t inputPoints) | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp: In member function ‘compareSimdMathFunction.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/simd/tests/simd_math.cpp:202:87: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 202 | std::vector testPoints = generateTestPoints(compareSettings.range, s_nPoints); | ^ [541/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/topology/tests/CMakeFiles/topology-test.dir/link.d src/gromacs/topology/tests/CMakeFiles/topology-test.dir/atoms.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/exclusionblocks.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/idef.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/index.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/mtop.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/symtab.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/topsort.cpp.o src/gromacs/topology/tests/CMakeFiles/topology-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/topology-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [542/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/link.d src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/entropy.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmxanatestbase.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_chi.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_mindist.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rms.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rmsdist.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rmsf.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_sorient.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_rotmat.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_saltbr.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gmxana-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [543/595] /usr/bin/g++ -DCL_TARGET_OPENCL_VERSION=120 -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/programs/mdrun/tests/Testing/Temporary\" -DTMPI_USE_VISIBILITY -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/src/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/utility/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/mpich/redhat-linux-build/api/legacy/include -I/builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/math/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/thread_mpi/include -isystem /usr/include/mpich-aarch64 -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/muparser -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=c++17 -Wno-comment -fexcess-precision=fast -funroll-all-loops -Wno-missing-field-initializers -Wno-old-style-cast -Wno-cast-qual -Wno-suggest-override -Wno-suggest-destructor-override -Wno-zero-as-null-pointer-constant -fopenmp -MD -MT src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -MF src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o.d -o src/programs/mdrun/tests/CMakeFiles/mdrun-pull-test.dir/pull.cpp.o -c /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/programs/mdrun/tests/pull.cpp [544/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/link.d src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/energyterm.cpp.o src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/energyanalysis-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [545/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/fileio/h5md/tests/CMakeFiles/h5md-test.dir/link.d src/gromacs/fileio/h5md/CMakeFiles/h5md.dir/h5md.cpp.o src/gromacs/fileio/h5md/tests/CMakeFiles/h5md-test.dir/h5md_disabled.cpp.o src/gromacs/fileio/h5md/tests/CMakeFiles/h5md-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/h5md-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [546/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/link.d src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/convert-tpr-with-leaks.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test-with-leaks.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/tool-test-with-leaks -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [547/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/link.d src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/arraydata.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/average.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/histogram.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/lifetime.cpp.o src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/analysisdata-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libanalysisdata-test-shared.a lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libgmock.a lib/libgtest.a && : [548/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/link.d src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/coordinate_exception_handling.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/physicalnodecommunicator_mpi.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/utility-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [549/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/link.d src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o bin/testutils-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [550/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/link.d src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/builder.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadaptercontainer.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/outputadapters.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/register.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/requirements.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setatoms.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setbothtime.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/setstarttime.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/settimestep.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/testmodule.cpp.o src/gromacs/coordinateio/tests/CMakeFiles/coordinateio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/coordinateio-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [551/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/utility/tests/CMakeFiles/mpicomm-test.dir/link.d src/gromacs/utility/tests/CMakeFiles/mpicomm-test.dir/mpicomm.cpp.o src/gromacs/utility/tests/CMakeFiles/mpicomm-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/mpicomm-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [552/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/selection/tests/CMakeFiles/selection-test.dir/link.d src/gromacs/selection/tests/CMakeFiles/selection-test.dir/indexutil.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/nbsearch.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/poscalc.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectioncollection.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/selectionoption.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/toputils.cpp.o src/gromacs/selection/tests/CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/selection-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [553/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/tools/tests/CMakeFiles/tool-test.dir/link.d src/gromacs/tools/tests/CMakeFiles/tool-test.dir/dump.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/helpwriting.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/make_ndx.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/report_methods.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/trjconv.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/convert-tpr.cpp.o src/gromacs/tools/tests/CMakeFiles/tool-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/tool-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [554/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/link.d src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/checkpoint.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/confio.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filemd5.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/filetypes.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/matio.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcserializer.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymap.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/mrcdensitymapheader.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/readinp.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/timecontrol.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/tngio.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xdr_serializer.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/xvgio.cpp.o src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/fileio-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [555/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/link.d src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/convparm.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/editconf.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genion.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/genrestr.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gen_maxwell_velocities.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_atomtype.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/gpp_bond_atomtype.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/grompp_directives.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/insert_molecules.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/massrepartitioning.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/topdirs.cpp.o src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/gmxpreprocess-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [556/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/link.d src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/awh_setup.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasgrid.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biassharing.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/biasstate.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/bias_fep_lambda_state.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/friction_metric.cpp.o src/gromacs/applied_forces/awh/tests/CMakeFiles/awh-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/awh-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [557/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/link.d src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/domdec-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [558/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/testutils/tests/CMakeFiles/testutils-test.dir/link.d src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/naming.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/posixmemstream.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o bin/testutils-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [559/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/link.d src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfitting.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingamplitudelookup.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingforceprovider.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/densityfittingoptions.cpp.o src/gromacs/applied_forces/densityfitting/tests/CMakeFiles/density_fitting_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/density_fitting_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [560/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-gpu-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-gpu-test.dir/freeenergygpukernel.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-gpu-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nonbonded-fep-gpu-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [561/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/link.d src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/haloexchange_mpi.cpp.o src/gromacs/domdec/tests/CMakeFiles/domdec-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/domdec-mpi-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘GTestIsInitialized’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:435:52, inlined from ‘InitGoogleTestImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6935:25, inlined from ‘InitGoogleTest’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googletest/src/gtest.cc:6975:31, inlined from ‘InitGoogleMockImpl’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:148:17, inlined from ‘InitGoogleMock’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/external/googletest/googlemock/src/gmock.cc:204:31, inlined from ‘initTestUtils.constprop’ at /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:222:34: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] 183 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp: In function ‘initTestUtils.constprop’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/testutils/testinit.cpp:174:6: note: declared here 174 | void initTestUtils(const std::filesystem::path& dataPath, | ^ [562/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/link.d src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpot.cpp.o src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotoptions.cpp.o src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpottopologypreprocessor.cpp.o src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/nnpotforceprovider.cpp.o src/gromacs/applied_forces/nnpot/tests/CMakeFiles/nnpot_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/nnpot_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib /usr/lib64/libOpenCL.so lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [563/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-test.dir/freeenergykernel.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nonbonded-fep-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nonbonded-fep-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [564/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/link.d src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/filenm.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/commandline-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libonlinehelp-test-shared.a lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libgmock.a lib/libgtest.a && : [565/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/link.d src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/electricfield.cpp.o src/gromacs/applied_forces/tests/CMakeFiles/applied_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so lib/libtestutils.a lib/libgromacs_mpich.a /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgmock.a lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [566/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/link.d src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/exclusions.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernel_test.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/kernelsetup.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/plainpairlist.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/simd_energy_accumulator.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/testsystem.cpp.o src/gromacs/nbnxm/tests/CMakeFiles/nbnxm-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/nbnxm-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp: In function ‘combineLJParams’: /builddir/build/BUILD/gromacs-2026.3-build/gromacs-2026.3/src/gromacs/nbnxm/tests/testsystem.cpp:123:28: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 123 | combineLJParams(sigmaO, epsilonO, sigmaO, epsilonO, ljCombinationRule); | ^ [567/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/utility/tests/CMakeFiles/utility-test.dir/link.d src/gromacs/utility/tests/CMakeFiles/utility-test.dir/alignedallocator.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/arrayref.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/booltype.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask32.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask64.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/bitmask128.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/cstringutil.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/defaultinitializationallocator.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/enumerationhelpers.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/fixedcapacityvector.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/listoflists.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/logger.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/message_string_collector.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/mpicomm.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/path.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/physicalnodecommunicator.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/range.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/scope_guard.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/strconvert.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringtoenumvalueconverter.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/stringutil.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/template_mp.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textreader.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/textwriter.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/txtdump.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/typetraits.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/vecdump.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/vectypes.cpp.o src/gromacs/utility/tests/CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/utility-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [568/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/link.d src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/plumedOptions.cpp.o src/gromacs/applied_forces/plumed/tests/CMakeFiles/plumed_applied_forces-test.dir/__/__/__/__/testutils/unittest_main.cpp.o -o bin/plumed_applied_forces-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && : [569/595] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/link.d src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/bonded.cpp.o src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/pairs.cpp.o src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/position_restraints.cpp.o src/gromacs/listed_forces/tests/CMakeFiles/listed_forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o bin/listed_forces-test -Wl,-rpath,/usr/lib64/mpich/lib lib/libtestutils.a lib/libgromacs_mpich.a lib/libgmock.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libtng_io.so.1.8.2 -lrt /usr/lib64/libfftw3f.so -lflexiblas /usr/lib64/libOpenCL.so -lm -ltng_io /usr/lib/gcc/aarch64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a /usr/lib64/liblmfit.so /usr/lib64/libmuparser.so.2.3.5 -ldl lib/libgtest.a /usr/lib64/mpich/lib/libmpicxx.so /usr/lib64/mpich/lib/libmpi.so && :