Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c113' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8175223-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.1 PID: 7376 Logging PID: 7377 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8175223, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '3706adf6785c184db5f56ad185ba315e3b498322', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/gui1ty/NumPy-2.x/morphio', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'morphio', 'package_version': '3.3.9-5', 'project_dirname': 'NumPy-2.x', 'project_name': 'NumPy-2.x', 'project_owner': 'gui1ty', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/gui1ty/NumPy-2.x/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'gui1ty/NumPy-2.x--gui1ty', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'gui1ty', 'tags': [], 'task_id': '8175223-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/gui1ty/NumPy-2.x/morphio /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/gui1ty/NumPy-2.x/morphio', '/var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio'... Running: git checkout 3706adf6785c184db5f56ad185ba315e3b498322 -- cmd: ['git', 'checkout', '3706adf6785c184db5f56ad185ba315e3b498322', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio rc: 0 stdout: stderr: Note: switching to '3706adf6785c184db5f56ad185ba315e3b498322'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 3706adf automatic import of morphio Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading MorphIO-3.3.9.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o MorphIO-3.3.9.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/gui1ty/NumPy-2.x/morphio/MorphIO-3.3.9.tar.gz/md5/789314860fdd6941794dc69f51175da2/MorphIO-3.3.9.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3484k 100 3484k 0 0 22.8M 0 --:--:-- --:--:-- --:--:-- 22.8M INFO: Reading stdout from command: md5sum MorphIO-3.3.9.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1729865458.828121 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.9 starting (python version = 3.12.1, NVR = mock-5.9-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio/morphio.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1729865458.828121 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio/morphio.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.9 INFO: Mock Version: 5.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1729865458.828121/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1729865458.828121/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/f6b5405353f8e1218e109c755c08a6d982068d307e31f5fccd65941ec2d4834b/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/f6b5405353f8e1218e109c755c08a6d982068d307e31f5fccd65941ec2d4834b/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1729865458.828121/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 5.1 MiB/s | 21.8 MiB | 00m04s Copr repository 100% | 2.3 MiB/s | 225.1 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-2.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-10.fc42 fedora 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 42-0.6 fedora 19.5 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40.9000-7.fc42 fedora 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 fedora 389.0 KiB info x86_64 7.1.1-2.fc42 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 296-1.fc42 fedora 186.6 KiB rpm-build x86_64 4.20.0-1.fc42 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.16.0-6.fc42 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.2-8.fc42 fedora 3.7 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.3-2.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.4.3-1.fc42 fedora 2.4 MiB alternatives x86_64 1.30-1.fc41 fedora 66.3 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.2-1.fc41 fedora 331.3 KiB authselect x86_64 1.5.0-8.fc42 fedora 157.5 KiB authselect-libs x86_64 1.5.0-8.fc42 fedora 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.50-5.fc42 fedora 27.6 MiB build-reproducibility-srpm-macros noarch 0.4.3-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-2.fc42 fedora 2.6 MiB coreutils-common x86_64 9.5-10.fc42 fedora 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20241018-1.gitce922cb.fc42 fedora 137.0 KiB curl x86_64 8.10.1-2.fc42 fedora 453.3 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.0-18.fc42 fedora 199.3 KiB dwz x86_64 0.15-8.fc42 fedora 299.2 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-12.fc41 fedora 40.1 KiB elfutils x86_64 0.192-3.fc42 fedora 2.7 MiB elfutils-debuginfod-client x86_64 0.192-3.fc42 fedora 76.0 KiB elfutils-default-yama-scope noarch 0.192-3.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-3.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-3.fc42 fedora 675.1 KiB fedora-gpg-keys noarch 42-0.3 fedora 126.4 KiB fedora-release noarch 42-0.6 fedora 0.0 B fedora-release-identity-basic noarch 42-0.6 fedora 719.0 B fedora-repos noarch 42-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 42-0.3 fedora 2.2 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-29.fc42 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-1.fc42 fedora 13.0 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.2-1.fc42 fedora 779.0 B glibc x86_64 2.40.9000-7.fc42 fedora 6.7 MiB glibc-common x86_64 2.40.9000-7.fc42 fedora 1.1 MiB glibc-gconv-extra x86_64 2.40.9000-7.fc42 fedora 8.1 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-3.fc41 fedora 60.8 KiB jansson x86_64 2.14-1.fc42 fedora 93.1 KiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-2.fc41 fedora 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.6-1.fc42 fedora 934.8 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.2-8.fc42 fedora 262.5 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc42 fedora 67.2 KiB libcurl x86_64 8.10.1-2.fc42 fedora 838.4 KiB libeconf x86_64 0.7.4-2.fc42 fedora 68.3 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.2-8.fc42 fedora 362.9 KiB libffi x86_64 3.4.6-3.fc42 fedora 86.4 KiB libgcc x86_64 14.2.1-4.fc42 fedora 274.6 KiB libgomp x86_64 14.2.1-4.fc42 fedora 523.8 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.2-8.fc42 fedora 355.8 KiB libnghttp2 x86_64 1.64.0-1.fc42 fedora 174.5 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc42 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 fedora 80.5 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-6.fc42 fedora 181.1 KiB libsemanage x86_64 3.7-3.fc42 fedora 298.0 KiB libsepol x86_64 3.7-3.fc42 fedora 818.0 KiB libsmartcols x86_64 2.40.2-8.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-1.fc42 fedora 569.6 KiB libssh-config noarch 0.11.1-1.fc42 fedora 277.0 B libstdc++ x86_64 14.2.1-4.fc42 fedora 2.8 MiB libtasn1 x86_64 4.19.0-9.fc41 fedora 175.7 KiB libtirpc x86_64 1.3.6-0.fc42 fedora 203.0 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libuuid x86_64 2.40.2-8.fc42 fedora 41.4 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.36-7.fc41 fedora 266.8 KiB libxml2 x86_64 2.12.8-2.fc41 fedora 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.7-1.fc42 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-5.fc41 fedora 644.2 KiB openssl-libs x86_64 1:3.2.2-8.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-4.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-4.fc42 fedora 403.8 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-8.fc42 fedora 1.6 MiB pam-libs x86_64 1.6.1-8.fc42 fedora 127.7 KiB pcre2 x86_64 10.44-1.fc41.1 fedora 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 fedora 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc42 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 fedora 67.5 KiB pyproject-srpm-macros noarch 1.15.1-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.0-1.fc42 fedora 456.0 B readline x86_64 8.2-11.fc42 fedora 493.1 KiB rpm x86_64 4.20.0-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc42 fedora 206.7 KiB rpm-libs x86_64 4.20.0-1.fc42 fedora 726.1 KiB rpm-sequoia x86_64 1.7.0-2.fc41 fedora 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 fedora 4.8 KiB setup noarch 2.15.0-5.fc41 fedora 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc42 fedora 1.4 MiB systemd-libs x86_64 256.7-1.fc42 fedora 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 fedora 1.5 MiB xxhash-libs x86_64 0.8.2-4.fc42 fedora 88.4 KiB xz-libs x86_64 1:5.6.3-2.fc42 fedora 218.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.1.7-3.fc42 fedora 138.0 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation, 181 MiB extra will be used (install 181 MiB, remove 0 B). [ 1/154] bzip2-0:1.0.8-19.fc41.x86_64 100% | 112.5 KiB/s | 52.5 KiB | 00m00s [ 2/154] cpio-0:2.15-2.fc41.x86_64 100% | 634.3 KiB/s | 291.8 KiB | 00m00s [ 3/154] coreutils-0:9.5-10.fc42.x86_6 100% | 1.0 MiB/s | 1.1 MiB | 00m01s [ 4/154] fedora-release-common-0:42-0. 100% | 259.1 KiB/s | 23.3 KiB | 00m00s [ 5/154] bash-0:5.2.32-2.fc42.x86_64 100% | 1.5 MiB/s | 1.8 MiB | 00m01s [ 6/154] findutils-1:4.10.0-4.fc41.x86 100% | 3.9 MiB/s | 548.6 KiB | 00m00s [ 7/154] glibc-minimal-langpack-0:2.40 100% | 1.2 MiB/s | 122.2 KiB | 00m00s [ 8/154] diffutils-0:3.10-8.fc41.x86_6 100% | 965.1 KiB/s | 405.4 KiB | 00m00s [ 9/154] gzip-0:1.13-2.fc41.x86_64 100% | 1.8 MiB/s | 170.2 KiB | 00m00s [ 10/154] grep-0:3.11-9.fc41.x86_64 100% | 2.6 MiB/s | 299.8 KiB | 00m00s [ 11/154] info-0:7.1.1-2.fc42.x86_64 100% | 1.6 MiB/s | 183.2 KiB | 00m00s [ 12/154] patch-0:2.7.6-25.fc41.x86_64 100% | 1.4 MiB/s | 131.0 KiB | 00m00s [ 13/154] redhat-rpm-config-0:296-1.fc4 100% | 877.1 KiB/s | 82.4 KiB | 00m00s [ 14/154] sed-0:4.9-3.fc41.x86_64 100% | 3.0 MiB/s | 317.7 KiB | 00m00s [ 15/154] rpm-build-0:4.20.0-1.fc42.x86 100% | 449.6 KiB/s | 82.7 KiB | 00m00s [ 16/154] tar-2:1.35-4.fc41.x86_64 100% | 3.9 MiB/s | 860.7 KiB | 00m00s [ 17/154] unzip-0:6.0-64.fc41.x86_64 100% | 897.8 KiB/s | 184.9 KiB | 00m00s [ 18/154] shadow-utils-2:4.16.0-6.fc42. 100% | 4.0 MiB/s | 1.3 MiB | 00m00s [ 19/154] which-0:2.21-42.fc41.x86_64 100% | 500.7 KiB/s | 41.6 KiB | 00m00s [ 20/154] gawk-0:5.3.0-4.fc41.x86_64 100% | 8.9 MiB/s | 1.1 MiB | 00m00s [ 21/154] util-linux-0:2.40.2-8.fc42.x8 100% | 8.4 MiB/s | 1.2 MiB | 00m00s [ 22/154] filesystem-0:3.18-29.fc42.x86 100% | 8.6 MiB/s | 1.1 MiB | 00m00s [ 23/154] xz-1:5.6.3-2.fc42.x86_64 100% | 1.6 MiB/s | 475.4 KiB | 00m00s [ 24/154] ncurses-libs-0:6.5-2.20240629 100% | 1.8 MiB/s | 334.0 KiB | 00m00s [ 25/154] glibc-0:2.40.9000-7.fc42.x86_ 100% | 8.4 MiB/s | 2.2 MiB | 00m00s [ 26/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 221.0 KiB/s | 41.1 KiB | 00m00s [ 27/154] gmp-1:6.3.0-2.fc41.x86_64 100% | 1.7 MiB/s | 318.0 KiB | 00m00s [ 28/154] libacl-0:2.3.2-2.fc41.x86_64 100% | 132.4 KiB/s | 24.5 KiB | 00m00s [ 29/154] coreutils-common-0:9.5-10.fc4 100% | 8.3 MiB/s | 2.1 MiB | 00m00s [ 30/154] libattr-0:2.5.2-4.fc41.x86_64 100% | 206.5 KiB/s | 18.2 KiB | 00m00s [ 31/154] libcap-0:2.70-4.fc41.x86_64 100% | 677.3 KiB/s | 86.7 KiB | 00m00s [ 32/154] openssl-libs-1:3.2.2-8.fc42.x 100% | 12.4 MiB/s | 2.3 MiB | 00m00s [ 33/154] libselinux-0:3.7-6.fc42.x86_6 100% | 341.9 KiB/s | 88.6 KiB | 00m00s [ 34/154] glibc-common-0:2.40.9000-7.fc 100% | 4.1 MiB/s | 411.1 KiB | 00m00s [ 35/154] pcre2-0:10.44-1.fc41.1.x86_64 100% | 2.7 MiB/s | 243.1 KiB | 00m00s [ 36/154] systemd-libs-0:256.7-1.fc42.x 100% | 1.7 MiB/s | 731.9 KiB | 00m00s [ 37/154] ed-0:1.20.2-2.fc41.x86_64 100% | 899.0 KiB/s | 81.8 KiB | 00m00s [ 38/154] ansible-srpm-macros-0:1-16.fc 100% | 230.8 KiB/s | 20.8 KiB | 00m00s [ 39/154] build-reproducibility-srpm-ma 100% | 133.1 KiB/s | 11.2 KiB | 00m00s [ 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ncurses-base-0:6.5-2.20240629 100% | 755.2 KiB/s | 88.4 KiB | 00m00s [ 92/154] libsepol-0:3.7-3.fc42.x86_64 100% | 1.2 MiB/s | 342.2 KiB | 00m00s [ 93/154] crypto-policies-0:20241018-1. 100% | 750.3 KiB/s | 97.5 KiB | 00m00s [ 94/154] ca-certificates-0:2024.2.69_v 100% | 2.3 MiB/s | 944.5 KiB | 00m00s [ 95/154] fedora-repos-rawhide-0:42-0.3 100% | 105.6 KiB/s | 8.8 KiB | 00m00s [ 96/154] fedora-gpg-keys-0:42-0.3.noar 100% | 890.9 KiB/s | 133.6 KiB | 00m00s [ 97/154] pcre2-syntax-0:10.44-1.fc41.1 100% | 784.8 KiB/s | 149.9 KiB | 00m00s [ 98/154] file-libs-0:5.45-7.fc41.x86_6 100% | 2.4 MiB/s | 762.0 KiB | 00m00s [ 99/154] add-determinism-0:0.4.3-1.fc4 100% | 1.5 MiB/s | 904.4 KiB | 00m01s [100/154] curl-0:8.10.1-2.fc42.x86_64 100% | 687.4 KiB/s | 221.3 KiB | 00m00s [101/154] glibc-gconv-extra-0:2.40.9000 100% | 931.8 KiB/s | 1.7 MiB | 00m02s [102/154] elfutils-debuginfod-client-0: 100% | 443.1 KiB/s | 43.4 KiB | 00m00s [103/154] elfutils-libs-0:0.192-3.fc42. 100% | 669.2 KiB/s | 263.7 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00m01s [142/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 1.2 MiB/s | 340.5 KiB | 00m00s [143/154] libidn2-0:2.3.7-2.fc41.x86_64 100% | 1.2 MiB/s | 118.4 KiB | 00m00s [144/154] libnghttp2-0:1.64.0-1.fc42.x8 100% | 723.6 KiB/s | 77.4 KiB | 00m00s [145/154] libpsl-0:0.21.5-4.fc41.x86_64 100% | 728.2 KiB/s | 64.1 KiB | 00m00s [146/154] openldap-0:2.6.8-5.fc41.x86_6 100% | 2.2 MiB/s | 255.6 KiB | 00m00s [147/154] libssh-0:0.11.1-1.fc42.x86_64 100% | 1.5 MiB/s | 231.9 KiB | 00m00s [148/154] publicsuffix-list-dafsa-0:202 100% | 600.8 KiB/s | 58.3 KiB | 00m00s [149/154] libssh-config-0:0.11.1-1.fc42 100% | 110.4 KiB/s | 9.4 KiB | 00m00s [150/154] libunistring-0:1.1-8.fc41.x86 100% | 2.3 MiB/s | 544.8 KiB | 00m00s [151/154] libevent-0:2.1.12-14.fc41.x86 100% | 1.2 MiB/s | 257.5 KiB | 00m00s [152/154] gdb-minimal-0:15.2-1.fc42.x86 100% | 2.9 MiB/s | 4.3 MiB | 00m01s [153/154] libtool-ltdl-0:2.4.7-12.fc41. 100% | 203.4 KiB/s | 35.6 KiB | 00m00s [154/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 1.9 MiB/s | 794.9 KiB | 00m00s -------------------------------------------------------------------------------- [154/154] Total 100% | 4.5 MiB/s | 53.3 MiB | 00m12s Running transaction Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0x105EF944: UserID : "Fedora (42) " Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary The key was successfully imported. Importing PGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. Importing PGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. [ 1/156] Verify package files 100% | 754.0 B/s | 154.0 B | 00m00s [ 2/156] Prepare transaction 100% | 1.8 KiB/s | 154.0 B | 00m00s [ 3/156] Installing libgcc-0:14.2.1-4. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s [ 4/156] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/156] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 6/156] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/156] Installing fedora-repos-rawhi 100% | 2.4 MiB/s | 2.4 KiB | 00m00s [ 8/156] Installing fedora-gpg-keys-0: 100% | 15.3 MiB/s | 172.2 KiB | 00m00s [ 9/156] Installing fedora-repos-0:42- 100% | 5.6 MiB/s | 5.7 KiB | 00m00s [ 10/156] Installing fedora-release-com 100% | 11.6 MiB/s | 23.8 KiB | 00m00s [ 11/156] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/156] Installing setup-0:2.15.0-5.f 100% | 47.3 MiB/s | 726.1 KiB | 00m00s [ 13/156] Installing filesystem-0:3.18- 100% | 1.6 MiB/s | 212.6 KiB | 00m00s [ 14/156] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/156] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 16/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 17/156] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 18/156] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 19/156] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 20/156] Installing glibc-0:2.40.9000- 100% | 136.8 MiB/s | 6.7 MiB | 00m00s [ 21/156] Installing bash-0:5.2.32-2.fc 100% | 263.5 MiB/s | 8.2 MiB | 00m00s [ 22/156] Installing glibc-common-0:2.4 100% | 117.5 MiB/s | 1.1 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [ 23/156] Installing glibc-gconv-extra- 100% | 136.9 MiB/s | 8.2 MiB | 00m00s [ 24/156] Installing zlib-ng-compat-0:2 100% | 135.5 MiB/s | 138.8 KiB | 00m00s [ 25/156] Installing 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00m00s [ 38/156] Installing libeconf-0:0.7.4-2 100% | 34.2 MiB/s | 70.0 KiB | 00m00s [ 39/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s [ 40/156] Installing dwz-0:0.15-8.fc42. 100% | 146.8 MiB/s | 300.6 KiB | 00m00s [ 41/156] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB | 00m00s [ 42/156] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s | 1.7 MiB | 00m00s [ 43/156] Installing unzip-0:6.0-64.fc4 100% | 127.0 MiB/s | 390.3 KiB | 00m00s [ 44/156] Installing file-libs-0:5.45-7 100% | 473.0 MiB/s | 9.9 MiB | 00m00s [ 45/156] Installing file-0:5.45-7.fc41 100% | 8.5 MiB/s | 105.0 KiB | 00m00s [ 46/156] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.3 KiB | 00m00s [ 47/156] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB | 00m00s [ 48/156] Installing grep-0:3.11-9.fc41 100% | 125.4 MiB/s | 1.0 MiB | 00m00s [ 49/156] Installing xz-1:5.6.3-2.fc42. 100% | 123.7 MiB/s | 1.2 MiB | 00m00s [ 50/156] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [ 51/156] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s [ 52/156] Installing pam-libs-0:1.6.1-8 100% | 126.7 MiB/s | 129.7 KiB | 00m00s [ 53/156] Installing libcap-0:2.70-4.fc 100% | 73.3 MiB/s | 225.2 KiB | 00m00s [ 54/156] Installing systemd-libs-0:256 100% | 254.7 MiB/s | 2.0 MiB | 00m00s [ 55/156] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 56/156] Installing libsepol-0:3.7-3.f 100% | 266.6 MiB/s | 819.0 KiB | 00m00s [ 57/156] Installing libselinux-0:3.7-6 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 58/156] Installing sed-0:4.9-3.fc41.x 100% | 121.3 MiB/s | 869.7 KiB | 00m00s [ 59/156] Installing findutils-1:4.10.0 100% | 185.8 MiB/s | 1.9 MiB | 00m00s [ 60/156] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB | 00m00s [ 61/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 62/156] Installing lua-libs-0:5.4.7-1 100% | 139.7 MiB/s | 286.2 KiB | 00m00s [ 63/156] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 64/156] Installing alternatives-0:1.3 100% | 66.3 MiB/s | 67.9 KiB | 00m00s [ 65/156] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 66/156] Installing libtasn1-0:4.19.0- 100% | 86.7 MiB/s | 177.5 KiB | 00m00s [ 67/156] Installing p11-kit-0:0.25.5-4 100% | 158.3 MiB/s | 2.2 MiB | 00m00s [ 68/156] Installing libunistring-0:1.1 100% | 247.2 MiB/s | 1.7 MiB | 00m00s [ 69/156] Installing libidn2-0:2.3.7-2. 100% | 65.4 MiB/s | 335.1 KiB | 00m00s [ 70/156] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s [ 71/156] Installing p11-kit-trust-0:0. 100% | 30.5 MiB/s | 405.5 KiB | 00m00s [ 72/156] Installing zstd-0:1.5.6-2.fc4 100% | 241.6 MiB/s | 1.7 MiB | 00m00s [ 73/156] Installing util-linux-core-0: 100% | 138.9 MiB/s | 1.5 MiB | 00m00s [ 74/156] Installing tar-2:1.35-4.fc41. 100% | 227.6 MiB/s | 3.0 MiB | 00m00s [ 75/156] Installing libsemanage-0:3.7- 100% | 97.6 MiB/s | 299.8 KiB | 00m00s [ 76/156] Installing shadow-utils-2:4.1 100% | 121.9 MiB/s | 4.1 MiB | 00m00s [ 77/156] Installing zip-0:3.0-41.fc41. 100% | 172.6 MiB/s | 707.1 KiB | 00m00s [ 78/156] Installing gdbm-1:1.23-7.fc41 100% | 113.7 MiB/s | 465.8 KiB | 00m00s [ 79/156] Installing cyrus-sasl-lib-0:2 100% | 256.2 MiB/s | 2.3 MiB | 00m00s [ 80/156] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB | 00m00s [ 81/156] Installing libxml2-0:2.12.8-2 100% | 244.6 MiB/s | 1.7 MiB | 00m00s [ 82/156] Installing bzip2-0:1.0.8-19.f 100% | 48.9 MiB/s | 100.2 KiB | 00m00s [ 83/156] Installing add-determinism-0: 100% | 270.1 MiB/s | 2.4 MiB | 00m00s [ 84/156] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 85/156] Installing sqlite-libs-0:3.46 100% | 238.8 MiB/s | 1.4 MiB | 00m00s [ 86/156] Installing ed-0:1.20.2-2.fc41 100% | 72.8 MiB/s | 149.2 KiB | 00m00s [ 87/156] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [ 88/156] Installing elfutils-default-y 100% | 204.3 KiB/s | 2.0 KiB | 00m00s [ 89/156] Installing elfutils-libs-0:0. 100% | 165.3 MiB/s | 677.0 KiB | 00m00s [ 90/156] Installing cpio-0:2.15-2.fc41 100% | 157.1 MiB/s | 1.1 MiB | 00m00s [ 91/156] Installing diffutils-0:3.10-8 100% | 176.7 MiB/s | 1.6 MiB | 00m00s [ 92/156] Installing libgomp-0:14.2.1-4 100% | 256.4 MiB/s | 525.2 KiB | 00m00s [ 93/156] Installing json-c-0:0.17-4.fc 100% | 81.7 MiB/s | 83.6 KiB | 00m00s [ 94/156] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [ 95/156] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [ 96/156] Installing jansson-0:2.14-1.f 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [ 97/156] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s [ 98/156] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [ 99/156] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [100/156] Installing xxhash-libs-0:0.8. 100% | 87.7 MiB/s | 89.8 KiB | 00m00s [101/156] Installing libbrotli-0:1.1.0- 100% | 205.0 MiB/s | 839.9 KiB | 00m00s [102/156] Installing libnghttp2-0:1.64. 100% | 171.5 MiB/s | 175.6 KiB | 00m00s [103/156] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [104/156] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [105/156] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [106/156] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [107/156] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [108/156] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [109/156] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [110/156] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [111/156] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [112/156] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [113/156] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [114/156] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [115/156] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [116/156] Installing coreutils-common-0 100% | 254.3 MiB/s | 11.2 MiB | 00m00s [117/156] Installing openssl-libs-1:3.2 100% | 313.1 MiB/s | 7.8 MiB | 00m00s [118/156] Installing coreutils-0:9.5-10 100% | 154.8 MiB/s | 5.7 MiB | 00m00s [119/156] Installing ca-certificates-0: 100% | 1.1 MiB/s | 2.4 MiB | 00m02s [120/156] Installing krb5-libs-0:1.21.3 100% | 176.9 MiB/s | 2.3 MiB | 00m00s [121/156] Installing libarchive-0:3.7.6 100% | 228.7 MiB/s | 936.7 KiB | 00m00s [122/156] Installing libtirpc-0:1.3.6-0 100% | 100.0 MiB/s | 204.8 KiB | 00m00s [123/156] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [124/156] Installing authselect-libs-0: 100% | 81.8 MiB/s | 837.2 KiB | 00m00s [125/156] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [126/156] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [127/156] Installing libnsl2-0:2.0.1-2. 100% | 28.8 MiB/s | 59.1 KiB | 00m00s [128/156] Installing pam-0:1.6.1-8.fc42 100% | 73.0 MiB/s | 1.7 MiB | 00m00s [129/156] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB | 00m00s [130/156] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [131/156] Installing rpm-libs-0:4.20.0- 100% | 177.7 MiB/s | 727.7 KiB | 00m00s [132/156] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB | 00m00s [133/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB | 00m00s [134/156] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [135/156] Installing libcurl-0:8.10.1-2 100% | 205.0 MiB/s | 839.5 KiB | 00m00s [136/156] Installing elfutils-debuginfo 100% | 38.2 MiB/s | 78.2 KiB | 00m00s [137/156] Installing elfutils-0:0.192-3 100% | 242.3 MiB/s | 2.7 MiB | 00m00s [138/156] Installing binutils-0:2.43.50 100% | 265.6 MiB/s | 27.6 MiB | 00m00s [139/156] Installing gdb-minimal-0:15.2 100% | 295.4 MiB/s | 13.0 MiB | 00m00s [140/156] Installing debugedit-0:5.0-18 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [141/156] Installing curl-0:8.10.1-2.fc 100% | 23.4 MiB/s | 455.8 KiB | 00m00s [142/156] Installing rpm-0:4.20.0-1.fc4 100% | 89.5 MiB/s | 2.5 MiB | 00m00s [143/156] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [144/156] Installing lua-srpm-macros-0: 100% | 1.9 MiB/s | 1.9 KiB | 00m00s [145/156] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [146/156] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [147/156] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/156] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/156] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [150/156] Installing redhat-rpm-config- 100% | 47.2 MiB/s | 193.2 KiB | 00m00s [151/156] Installing rpm-build-0:4.20.0 100% | 49.5 MiB/s | 202.9 KiB | 00m00s [152/156] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [153/156] Installing util-linux-0:2.40. 100% | 88.5 MiB/s | 3.7 MiB | 00m00s [154/156] Installing authselect-0:1.5.0 100% | 39.5 MiB/s | 161.9 KiB | 00m00s [155/156] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [156/156] Installing info-0:7.1.1-2.fc4 100% | 124.1 KiB/s | 362.2 KiB | 00m03s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.4.3-1.fc42.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-8.fc42.x86_64 authselect-libs-1.5.0-8.fc42.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.50-5.fc42.x86_64 build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-2.fc42.noarch coreutils-9.5-10.fc42.x86_64 coreutils-common-9.5-10.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20241018-1.gitce922cb.fc42.noarch curl-8.10.1-2.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-18.fc42.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc42.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.192-3.fc42.x86_64 elfutils-debuginfod-client-0.192-3.fc42.x86_64 elfutils-default-yama-scope-0.192-3.fc42.noarch elfutils-libelf-0.192-3.fc42.x86_64 elfutils-libs-0.192-3.fc42.x86_64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.6.noarch fedora-release-common-42-0.6.noarch fedora-release-identity-basic-42-0.6.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-29.fc42.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.2-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-7.fc42.x86_64 glibc-common-2.40.9000-7.fc42.x86_64 glibc-gconv-extra-2.40.9000-7.fc42.x86_64 glibc-minimal-langpack-2.40.9000-7.fc42.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-105ef944-65ca83d1 gpg-pubkey-31645531-66b6dccf gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1.1-2.fc42.x86_64 jansson-2.14-1.fc42.x86_64 json-c-0.17-4.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.6-1.fc42.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc42.x86_64 libcurl-8.10.1-2.fc42.x86_64 libeconf-0.7.4-2.fc42.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-4.fc42.x86_64 libgomp-14.2.1-4.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.64.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-6.fc42.x86_64 libsemanage-3.7-3.fc42.x86_64 libsepol-3.7-3.fc42.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-4.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-0.fc42.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.7-1.fc42.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-8.fc42.x86_64 p11-kit-0.25.5-4.fc42.x86_64 p11-kit-trust-0.25.5-4.fc42.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-8.fc42.x86_64 pam-libs-1.6.1-8.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.15.1-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.0-1.fc42.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-296-1.fc42.noarch rpm-4.20.0-1.fc42.x86_64 rpm-build-4.20.0-1.fc42.x86_64 rpm-build-libs-4.20.0-1.fc42.x86_64 rpm-libs-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.16.0-6.fc42.x86_64 sqlite-libs-3.46.1-1.fc42.x86_64 systemd-libs-256.7-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-4.fc42.x86_64 xz-5.6.3-2.fc42.x86_64 xz-libs-5.6.3-2.fc42.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-3.fc42.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Wrote: /builddir/build/SRPMS/morphio-3.3.9-5.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1729865458.828121/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6dzs3l4b/morphio/morphio.spec) Config(child) 0 minutes 45 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/morphio-3.3.9-5.fc42.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1729865458.828121/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1729865458.828121/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1729865458.828121/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.6.2-1.fc42.x86_64 dnf5-plugins-5.2.6.2-1.fc42.x86_64 Finish: chroot init Start: build phase for morphio-3.3.9-5.fc42.src.rpm Start: build setup for morphio-3.3.9-5.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Wrote: /builddir/build/SRPMS/morphio-3.3.9-5.fc42.src.rpm Updating and loading repositories: fedora 100% | 669.9 KiB/s | 26.1 KiB | 00m00s Copr repository 100% | 47.8 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: boost-devel x86_64 1.83.0-8.fc41 fedora 143.0 MiB catch2-devel x86_64 2.13.10-5.fc41 fedora 952.8 KiB cmake x86_64 3.28.3-7.fc41 fedora 31.6 MiB gcc-c++ x86_64 14.2.1-4.fc42 fedora 38.2 MiB gsl-lite-devel x86_64 0.41.0-5.fc41 fedora 308.1 KiB gulrak-filesystem-devel x86_64 1.5.14-8.fc41 fedora 272.2 KiB hdf5-devel x86_64 1.12.1-20.fc41 fedora 3.9 MiB highfive-devel x86_64 2.10.0-1.fc41 fedora 377.0 KiB lcov noarch 2.0-4.fc41 fedora 930.9 KiB lexertl14-devel x86_64 1:0.1.0^20240506gitbca1359-2.fc42 fedora 573.7 KiB ninja-build x86_64 1.12.1-3.fc41 fedora 432.6 KiB pybind11-devel x86_64 2.13.1-3.fc42 copr_base 846.0 KiB python3-devel x86_64 3.13.0-1.fc42 fedora 1.8 MiB python3-h5py x86_64 3.12.1-2.fc42 copr_base 4.4 MiB python3-numpy x86_64 1:2.1.1-1.fc42 copr_base 40.7 MiB python3-pytest noarch 8.3.3-2.fc42 fedora 21.0 MiB python3-requests noarch 2.32.3-3.fc41 fedora 485.9 KiB python3-setuptools noarch 69.2.0-8.fc41 fedora 7.2 MiB python3-setuptools_scm noarch 8.1.0-1.fc42 fedora 320.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB annobin-docs noarch 12.70-1.fc42 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.70-1.fc42 fedora 985.6 KiB boost x86_64 1.83.0-8.fc41 fedora 1.3 KiB boost-atomic x86_64 1.83.0-8.fc41 fedora 21.0 KiB boost-chrono x86_64 1.83.0-8.fc41 fedora 37.6 KiB boost-container x86_64 1.83.0-8.fc41 fedora 65.5 KiB boost-context x86_64 1.83.0-8.fc41 fedora 16.5 KiB boost-contract x86_64 1.83.0-8.fc41 fedora 103.2 KiB boost-coroutine x86_64 1.83.0-8.fc41 fedora 21.2 KiB boost-date-time x86_64 1.83.0-8.fc41 fedora 16.3 KiB boost-fiber x86_64 1.83.0-8.fc41 fedora 82.8 KiB boost-filesystem x86_64 1.83.0-8.fc41 fedora 147.6 KiB boost-graph x86_64 1.83.0-8.fc41 fedora 346.4 KiB boost-iostreams x86_64 1.83.0-8.fc41 fedora 94.8 KiB boost-json x86_64 1.83.0-8.fc41 fedora 329.2 KiB boost-locale x86_64 1.83.0-8.fc41 fedora 606.2 KiB boost-log x86_64 1.83.0-8.fc41 fedora 1.5 MiB boost-math x86_64 1.83.0-8.fc41 fedora 647.1 KiB boost-nowide x86_64 1.83.0-8.fc41 fedora 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc41 fedora 57.6 KiB boost-program-options x86_64 1.83.0-8.fc41 fedora 272.7 KiB boost-python3 x86_64 1.83.0-8.fc41 fedora 250.5 KiB boost-random x86_64 1.83.0-8.fc41 fedora 29.7 KiB boost-regex x86_64 1.83.0-8.fc41 fedora 271.0 KiB boost-serialization x86_64 1.83.0-8.fc41 fedora 437.7 KiB boost-stacktrace x86_64 1.83.0-8.fc41 fedora 64.1 KiB boost-system x86_64 1.83.0-8.fc41 fedora 16.3 KiB boost-test x86_64 1.83.0-8.fc41 fedora 643.0 KiB boost-thread x86_64 1.83.0-8.fc41 fedora 136.8 KiB boost-timer x86_64 1.83.0-8.fc41 fedora 25.1 KiB boost-type_erasure x86_64 1.83.0-8.fc41 fedora 58.2 KiB boost-wave x86_64 1.83.0-8.fc41 fedora 635.9 KiB cmake-data noarch 3.28.3-7.fc41 fedora 8.0 MiB cmake-filesystem x86_64 3.28.3-7.fc41 fedora 0.0 B cmake-rpm-macros noarch 3.28.3-7.fc41 fedora 7.5 KiB cpp x86_64 14.2.1-4.fc42 fedora 35.0 MiB default-fonts-core-sans noarch 4.1-3.fc42 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-3.fc41 fedora 0.0 B expat x86_64 2.6.3-1.fc42 fedora 291.5 KiB flexiblas x86_64 3.4.4-3.fc41 fedora 48.5 KiB flexiblas-netlib x86_64 3.4.4-3.fc41 fedora 10.7 MiB flexiblas-openblas-openmp x86_64 3.4.4-3.fc41 fedora 43.3 KiB fontconfig x86_64 2.15.0-8.fc41 fedora 791.9 KiB fonts-filesystem noarch 1:2.0.5-17.fc41 fedora 0.0 B freetype x86_64 2.13.3-1.fc42 fedora 850.5 KiB gcc x86_64 14.2.1-4.fc42 fedora 104.4 MiB gcc-gfortran x86_64 14.2.1-4.fc42 fedora 37.2 MiB gcc-plugin-annobin x86_64 14.2.1-4.fc42 fedora 61.1 KiB gd x86_64 2.3.3-17.fc41 fedora 403.7 KiB glib2 x86_64 2.82.2-1.fc42 fedora 14.7 MiB glibc-devel x86_64 2.40.9000-7.fc42 fedora 37.8 KiB glibc-headers-x86 noarch 2.40.9000-7.fc42 fedora 2.2 MiB gnutls x86_64 3.8.7-4.fc42 fedora 3.2 MiB google-noto-fonts-common noarch 20240901-1.fc42 fedora 17.5 KiB google-noto-sans-vf-fonts noarch 20240901-1.fc42 fedora 1.2 MiB graphite2 x86_64 1.3.14-16.fc41 fedora 192.0 KiB groff-base x86_64 1.23.0-7.fc41 fedora 3.8 MiB harfbuzz x86_64 10.0.1-1.fc42 fedora 2.7 MiB hdf5 x86_64 1.12.1-20.fc41 fedora 8.4 MiB jbigkit-libs x86_64 2.1-30.fc41 fedora 117.6 KiB jsoncpp x86_64 1.9.5-8.fc41 fedora 253.4 KiB kernel-headers x86_64 6.12.0-0.rc4.39.fc42 fedora 6.4 MiB libX11 x86_64 1.8.10-2.fc42 fedora 1.3 MiB libX11-common noarch 1.8.10-2.fc42 fedora 1.1 MiB libXau x86_64 1.0.11-7.fc41 fedora 66.9 KiB libXpm x86_64 3.5.17-4.fc41 fedora 148.4 KiB libaec x86_64 1.1.3-1.fc42 fedora 98.1 KiB libaec-devel x86_64 1.1.3-1.fc42 fedora 12.5 KiB libaom x86_64 3.9.0-3.fc41 fedora 5.1 MiB libavif x86_64 1.0.4-7.fc41 fedora 183.8 KiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libdav1d x86_64 1.5.0-1.fc42 fedora 1.7 MiB libgfortran x86_64 14.2.1-4.fc42 fedora 3.0 MiB libicu x86_64 74.2-2.fc41 fedora 34.9 MiB libicu-devel x86_64 74.2-2.fc41 fedora 5.6 MiB libimagequant x86_64 4.0.3-5.fc41 fedora 666.7 KiB libjpeg-turbo x86_64 3.0.4-1.fc42 fedora 789.1 KiB liblerc x86_64 4.0.0-7.fc41 fedora 607.5 KiB liblzf x86_64 3.6-29.fc41 fedora 53.8 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libpng x86_64 2:1.6.44-1.fc42 fedora 245.8 KiB libquadmath x86_64 14.2.1-4.fc42 fedora 325.9 KiB libquadmath-devel x86_64 14.2.1-4.fc42 fedora 21.9 KiB libstdc++-devel x86_64 14.2.1-4.fc42 fedora 15.4 MiB libtiff x86_64 4.6.0-6.fc42 fedora 606.0 KiB libuv x86_64 1:1.49.2-1.fc42 fedora 569.4 KiB libvmaf x86_64 3.0.0-2.fc41 fedora 823.0 KiB libwebp x86_64 1.4.0-4.fc41 fedora 822.6 KiB libxcb x86_64 1.17.0-3.fc42 fedora 1.2 MiB libxcrypt-devel x86_64 4.4.36-7.fc41 fedora 30.3 KiB mailcap noarch 2.1.54-7.fc41 fedora 86.0 KiB make x86_64 1:4.4.1-9.fc42 fedora 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB ncurses x86_64 6.5-2.20240629.fc41 fedora 627.3 KiB nettle x86_64 3.10-3.fc41 fedora 793.0 KiB openblas x86_64 0.3.26-5.fc41 fedora 96.0 KiB openblas-openmp x86_64 0.3.26-5.fc41 fedora 39.4 MiB perl-AutoLoader noarch 5.74-512.fc42 fedora 20.5 KiB perl-B x86_64 1.89-512.fc42 fedora 498.0 KiB perl-B-Hooks-EndOfScope noarch 0.28-2.fc41 fedora 69.3 KiB perl-Capture-Tiny noarch 0.48-21.fc41 fedora 69.9 KiB perl-Carp noarch 1.54-511.fc41 fedora 46.6 KiB perl-Class-Data-Inheritable noarch 0.09-9.fc41 fedora 6.3 KiB perl-Class-Inspector noarch 1.36-17.fc41 fedora 57.5 KiB perl-Class-Method-Modifiers noarch 2.15-5.fc41 fedora 102.5 KiB perl-Class-Singleton noarch 1.6-12.fc41 fedora 39.7 KiB perl-Class-Struct noarch 0.68-512.fc42 fedora 25.4 KiB perl-Clone x86_64 0.47-1.fc42 fedora 36.5 KiB perl-Compress-Raw-Bzip2 x86_64 2.213-1.fc42 fedora 71.4 KiB perl-Compress-Raw-Zlib x86_64 2.213-1.fc42 fedora 163.3 KiB perl-Data-Dumper x86_64 2.189-512.fc41 fedora 111.7 KiB perl-Data-OptList noarch 0.114-5.fc41 fedora 50.1 KiB perl-Date-ISO8601 noarch 0.005-21.fc41 fedora 24.5 KiB perl-DateTime x86_64 2:1.65-6.fc41 fedora 383.0 KiB perl-DateTime-Locale noarch 1.43-1.fc41 fedora 22.3 MiB perl-DateTime-TimeZone noarch 2.63-1.fc42 fedora 6.0 MiB perl-DateTime-TimeZone-SystemV noarch 0.010-22.fc41 fedora 28.4 KiB perl-DateTime-TimeZone-Tzfile noarch 0.011-22.fc41 fedora 24.6 KiB perl-Devel-CallChecker x86_64 0.009-7.fc41 fedora 37.3 KiB perl-Devel-Caller x86_64 2.07-7.fc41 fedora 27.4 KiB perl-Devel-LexAlias x86_64 0.05-38.fc41 fedora 19.2 KiB perl-Devel-StackTrace noarch 1:2.05-4.fc41 fedora 48.9 KiB perl-Digest noarch 1.20-511.fc41 fedora 35.3 KiB perl-Digest-MD5 x86_64 2.59-5.fc41 fedora 59.8 KiB perl-Dist-CheckConflicts noarch 0.11-31.fc41 fedora 31.7 KiB perl-DynaLoader x86_64 1.56-512.fc42 fedora 32.1 KiB perl-DynaLoader-Functions noarch 0.004-5.fc41 fedora 19.7 KiB perl-Encode x86_64 4:3.21-511.fc41 fedora 4.7 MiB perl-Encode-Locale noarch 1.05-30.fc41 fedora 19.0 KiB perl-English noarch 1.11-512.fc42 fedora 6.2 KiB perl-Errno x86_64 1.38-512.fc42 fedora 8.4 KiB perl-Eval-Closure noarch 0.14-24.fc41 fedora 33.3 KiB perl-Exception-Class noarch 1.45-11.fc41 fedora 92.4 KiB perl-Exporter noarch 5.78-511.fc41 fedora 54.3 KiB perl-Fcntl x86_64 1.18-512.fc42 fedora 49.0 KiB perl-File-Basename noarch 2.86-512.fc42 fedora 14.0 KiB perl-File-Compare noarch 1.100.800-512.fc42 fedora 5.6 KiB perl-File-Copy noarch 2.41-512.fc42 fedora 19.6 KiB perl-File-Find noarch 1.44-512.fc42 fedora 41.9 KiB perl-File-Path noarch 2.18-511.fc41 fedora 63.5 KiB perl-File-ShareDir noarch 1.118-12.fc41 fedora 56.2 KiB perl-File-Temp noarch 1:0.231.100-511.fc41 fedora 162.3 KiB perl-File-stat noarch 1.14-512.fc42 fedora 12.5 KiB perl-FileHandle noarch 2.05-512.fc42 fedora 9.3 KiB perl-GD x86_64 2.83-2.fc41 fedora 403.3 KiB perl-Getopt-Long noarch 1:2.58-2.fc41 fedora 144.5 KiB perl-Getopt-Std noarch 1.14-512.fc42 fedora 11.2 KiB perl-HTML-Parser x86_64 3.83-1.fc41 fedora 281.8 KiB perl-HTML-Tagset noarch 3.24-2.fc41 fedora 18.7 KiB perl-HTTP-Date noarch 6.06-5.fc41 fedora 41.2 KiB perl-HTTP-Message noarch 7.00-1.fc42 fedora 215.3 KiB perl-HTTP-Tiny noarch 0.088-512.fc41 fedora 152.2 KiB perl-Hash-Util-FieldHash x86_64 1.27-512.fc42 fedora 66.6 KiB perl-I18N-LangTags noarch 0.45-512.fc42 fedora 82.3 KiB perl-I18N-Langinfo x86_64 0.24-512.fc42 fedora 38.8 KiB perl-IO x86_64 1.55-512.fc42 fedora 151.1 KiB perl-IO-Compress noarch 2.213-1.fc42 fedora 1.0 MiB perl-IO-HTML noarch 1.004-13.fc41 fedora 45.2 KiB perl-IO-Socket-IP noarch 0.42-512.fc41 fedora 98.7 KiB perl-IO-Socket-SSL noarch 2.089-1.fc42 fedora 703.3 KiB perl-IPC-Open3 noarch 1.22-512.fc42 fedora 22.5 KiB perl-JSON noarch 4.10-6.fc41 fedora 270.5 KiB perl-JSON-XS x86_64 1:4.03-15.fc41 fedora 270.3 KiB perl-LWP-MediaTypes noarch 6.04-19.fc41 fedora 79.0 KiB perl-Locale-Maketext noarch 1.33-512.fc41 fedora 171.3 KiB perl-Locale-Maketext-Simple noarch 1:0.21-512.fc42 fedora 12.8 KiB perl-MIME-Base32 noarch 1.303-21.fc41 fedora 30.7 KiB perl-MIME-Base64 x86_64 3.16-511.fc41 fedora 46.1 KiB perl-MRO-Compat noarch 0.15-10.fc41 fedora 43.0 KiB perl-Math-BigInt noarch 1:2.0030.03-3.fc41 fedora 957.7 KiB perl-Math-Complex noarch 1.62-512.fc42 fedora 85.0 KiB perl-Module-CoreList noarch 1:5.20241020-1.fc42 fedora 1.2 MiB perl-Module-Implementation noarch 0.09-40.fc41 fedora 24.7 KiB perl-Module-Load noarch 1:0.36-511.fc41 fedora 14.9 KiB perl-Module-Load-Conditional noarch 0.74-511.fc41 fedora 28.7 KiB perl-Module-Metadata noarch 1.000038-511.fc41 fedora 67.5 KiB perl-Module-Runtime noarch 0.016-23.fc41 fedora 30.4 KiB perl-Mozilla-CA noarch 20240924-1.fc42 fedora 10.3 KiB perl-Net-SSLeay x86_64 1.94-7.fc41 fedora 1.3 MiB perl-POSIX x86_64 2.20-512.fc42 fedora 235.1 KiB perl-Package-Generator noarch 1.106-32.fc41 fedora 29.9 KiB perl-Package-Stash noarch 0.40-8.fc41 fedora 55.9 KiB perl-Package-Stash-XS x86_64 0.30-9.fc41 fedora 68.3 KiB perl-PadWalker x86_64 2.5-15.fc41 fedora 45.1 KiB perl-Params-Check noarch 1:0.38-511.fc41 fedora 27.6 KiB perl-Params-Classify x86_64 0.015-24.fc41 fedora 47.6 KiB perl-Params-Util x86_64 1.102-16.fc41 fedora 54.6 KiB perl-Params-ValidationCompiler noarch 0.31-6.fc41 fedora 91.1 KiB perl-PathTools x86_64 3.91-511.fc41 fedora 180.0 KiB perl-Pod-Escapes noarch 1:1.07-511.fc41 fedora 24.9 KiB perl-Pod-Html noarch 1.35-512.fc42 fedora 42.2 KiB perl-Pod-Perldoc noarch 3.28.01-512.fc41 fedora 163.7 KiB perl-Pod-Simple noarch 1:3.45-511.fc41 fedora 560.9 KiB perl-Pod-Usage noarch 4:2.03-511.fc41 fedora 84.8 KiB perl-Ref-Util noarch 0.204-21.fc41 fedora 31.5 KiB perl-Ref-Util-XS x86_64 0.117-24.fc41 fedora 42.2 KiB perl-Role-Tiny noarch 2.002004-12.fc41 fedora 61.7 KiB perl-Scalar-List-Utils x86_64 5:1.68-1.fc42 fedora 148.9 KiB perl-SelectSaver noarch 1.02-512.fc42 fedora 2.2 KiB perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB perl-Specio noarch 0.48-7.fc41 fedora 329.7 KiB perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB perl-Sub-Exporter noarch 0.991-4.fc41 fedora 194.9 KiB perl-Sub-Exporter-Progressive noarch 0.001013-25.fc41 fedora 27.3 KiB perl-Sub-Install noarch 0.929-6.fc41 fedora 35.9 KiB perl-Symbol noarch 1.09-512.fc42 fedora 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9777-511.fc41 fedora 119.9 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-TimeDate noarch 1:2.33-15.fc41 fedora 95.2 KiB perl-Try-Tiny noarch 0.32-1.fc42 fedora 67.3 KiB perl-Types-Serialiser noarch 1.01-12.fc41 fedora 22.9 KiB perl-URI noarch 5.30-1.fc42 fedora 256.9 KiB perl-Variable-Magic x86_64 0.64-3.fc41 fedora 130.6 KiB perl-XString x86_64 0.005-14.fc41 fedora 37.0 KiB perl-base noarch 2.27-512.fc42 fedora 12.5 KiB perl-common-sense x86_64 3.7.5-18.fc41 fedora 47.0 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-512.fc42 fedora 5.8 KiB perl-interpreter x86_64 4:5.40.0-512.fc42 fedora 122.3 KiB perl-lib x86_64 0.65-512.fc42 fedora 8.5 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs x86_64 4:5.40.0-512.fc42 fedora 9.9 MiB perl-locale noarch 1.12-512.fc42 fedora 6.5 KiB perl-mro x86_64 1.29-512.fc42 fedora 45.6 KiB perl-namespace-autoclean noarch 0.31-1.fc42 fedora 43.5 KiB perl-namespace-clean noarch 0.27-27.fc41 fedora 38.7 KiB perl-overload noarch 1.37-512.fc42 fedora 71.5 KiB perl-overloading noarch 0.02-512.fc42 fedora 4.8 KiB perl-parent noarch 1:0.242-1.fc42 fedora 10.0 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-vars noarch 1.05-512.fc42 fedora 3.9 KiB perl-version x86_64 9:0.99.33-1.fc42 fedora 132.8 KiB perltidy noarch 20240903-1.fc42 fedora 3.9 MiB pyproject-rpm-macros noarch 1.15.1-1.fc42 fedora 109.2 KiB python-pip-wheel noarch 24.2-2.fc42 fedora 1.2 MiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3 x86_64 3.13.0-1.fc42 fedora 31.8 KiB python3-cached_property noarch 1.5.2-16.fc41 fedora 37.5 KiB python3-charset-normalizer noarch 3.4.0-1.fc42 fedora 319.9 KiB python3-idna noarch 3.9-1.fc42 fedora 639.8 KiB python3-iniconfig noarch 1.1.1-23.fc41 fedora 20.6 KiB python3-libs x86_64 3.13.0-1.fc42 fedora 40.4 MiB python3-packaging noarch 24.1-2.fc41 fedora 422.3 KiB python3-pluggy noarch 1.5.0-1.fc41 fedora 193.2 KiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB python3-six noarch 1.16.0-23.fc41 fedora 118.3 KiB python3-urllib3 noarch 2.2.3-3.fc42 fedora 1.0 MiB rav1e-libs x86_64 0.7.1-4.fc42 fedora 3.0 MiB rhash x86_64 1.4.5-1.fc42 fedora 359.3 KiB svt-av1-libs x86_64 2.1.0-2.fc41 fedora 7.1 MiB tzdata noarch 2024a-9.fc41 fedora 1.7 MiB vim-filesystem noarch 2:9.1.785-1.fc42 fedora 40.0 B xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB zlib-ng-compat-devel x86_64 2.1.7-3.fc42 fedora 106.8 KiB Transaction Summary: Installing: 279 packages Total size of inbound packages is 196 MiB. Need to download 196 MiB. After this operation, 784 MiB extra will be used (install 784 MiB, remove 0 B). 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gcc-0:14.2.1-4.fc42.x86_64 100% | 347.4 KiB/s | 37.0 MiB | 01m49s -------------------------------------------------------------------------------- [279/279] Total 100% | 1.8 MiB/s | 196.1 MiB | 01m51s Running transaction [ 1/281] Verify package files 100% | 415.0 B/s | 279.0 B | 00m01s [ 2/281] Prepare transaction 100% | 813.0 B/s | 279.0 B | 00m00s [ 3/281] Installing cmake-filesystem-0 100% | 2.3 MiB/s | 7.1 KiB | 00m00s [ 4/281] Installing boost-system-0:1.8 100% | 16.9 MiB/s | 17.3 KiB | 00m00s [ 5/281] Installing boost-chrono-0:1.8 100% | 37.7 MiB/s | 38.6 KiB | 00m00s [ 6/281] Installing boost-thread-0:1.8 100% | 67.2 MiB/s | 137.7 KiB | 00m00s [ 7/281] Installing libicu-0:74.2-2.fc 100% | 291.3 MiB/s | 35.0 MiB | 00m00s [ 8/281] Installing libgfortran-0:14.2 100% | 277.1 MiB/s | 3.0 MiB | 00m00s [ 9/281] Installing libmpc-0:1.3.1-6.f 100% | 162.3 MiB/s | 166.2 KiB | 00m00s [ 10/281] Installing boost-regex-0:1.83 100% | 132.8 MiB/s | 272.0 KiB | 00m00s [ 11/281] Installing 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00m00s [279/281] Installing gulrak-filesystem- 100% | 134.4 MiB/s | 275.2 KiB | 00m00s [280/281] Installing gsl-lite-devel-0:0 100% | 151.4 MiB/s | 310.1 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.spawn() or rpm.execute() instead [281/281] Installing lexertl14-devel-1: 100% | 1.5 MiB/s | 585.5 KiB | 00m00s Warning: skipped PGP checks for 3 packages from repository: copr_base Complete! Finish: build setup for morphio-3.3.9-5.fc42.src.rpm Start: rpmbuild morphio-3.3.9-5.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1724630400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.9fqjuO + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + test -d /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/rm -rf /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3VUiKA + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd /builddir/build/BUILD/morphio-3.3.9-build + rm -rf MorphIO-3.3.9 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/MorphIO-3.3.9.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd MorphIO-3.3.9 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-them-using-a-random-env-var.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/remove-upstreams-flags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/install-python-shared-object.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/stop-setup.py-from-cmake-build.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/pytest-float32.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/use-lib_install_dir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/allow_use_of_external_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/dont_use_cmake_for_finding_ghc_filesystem.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + rm -rvf 3rdparty/GSL_LITE removed directory '3rdparty/GSL_LITE' + sed -r -i /GSL_LITE/d MANIFEST.in + sed -r -i '/director.*\(.*(gsl-lite|GSL_LITE).*\)/d' 3rdparty/CMakeLists.txt + sed -r -i -e /TARGET_PROPERTY:gsl-lite,INTERFACE_INCLUDE_DIRECTORIES/d -e 's/PUBLIC[[:blank:]]+gsl-lite[[:blank:]]+(PRIVATE)/\1/' src/CMakeLists.txt + grep -ErIl '#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl[">]' . + xargs -r sed -r -i 's@(#[[:blank:]]*include[[:blank:]]+["<]gsl/gsl)([">])@\1-lite\.hpp\2@' + rm -rvf 3rdparty/lexertl + ln -s /usr/include/lexertl 3rdparty/ + find . -type f -name .gitignore -print -delete ./.gitignore ./doc/source/doxygen/.gitignore + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.wVRLdb + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTERNAL_PYBIND11:BOOL=TRUE -DEXTERNAL_HIGHFIVE:BOOL=TRUE -DEXTERNAL_GHC_FILESYSTEM:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DBUILD_BINDINGS:BOOL=TRUE -DMorphIO_CXX_WARNINGS:BOOL=FALSE -DMORPHIO_TESTS:BOOL=TRUE -DEXTERNAL_CATCH2:BOOL=TRUE -DMORPHIO_ENABLE_COVERAGE:BOOL=TRUE -DMORPHIO_USE_DOUBLE:BOOL=TRUE -DMORPHIO_VERSION_STRING:STRING=3.3.9 -GNinja -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Floating Point Type: double -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.1") -- Performing Test HAVE_fprofile_abs_path -- Performing Test HAVE_fprofile_abs_path - Success CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): src/CMakeLists.txt:84 (include) -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Found Python3: /usr/bin/python3.13 (found version "3.13.0") found components: Interpreter CMake Warning at CMake/CodeCoverage.cmake:206 (message): Code coverage results with an optimised (non-Debug) build may be misleading Call Stack (most recent call first): tests/CMakeLists.txt:42 (include) -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j2 --verbose Change Dir: '/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 2 [1/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -MF src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/dendritic_spine.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/dendritic_spine.cpp [2/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -MF src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/endoplasmic_reticulum.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/endoplasmic_reticulum.cpp [3/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -MF src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/errorMessages.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/errorMessages.cpp [5/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/collection.cpp.o -MF src/CMakeFiles/morphio_obj.dir/collection.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/collection.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/collection.cpp [6/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -MF src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/error_message_generation.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/error_message_generation.cpp [7/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -MF src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/glial_cell.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/glial_cell.cpp [8/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mito_section.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/mito_section.cpp [9/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -MF src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o.d -o src/CMakeFiles/morphio_obj.dir/mitochondria.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/mitochondria.cpp [10/62] /usr/bin/g++ -DMORPHIO_USE_DOUBLE -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 -I/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/src/../include -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/3rdparty/lexertl14/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++14 -fPIC -g --coverage -fprofile-abs-path -MD -MT 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tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_swc_reader.cpp [58/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -MF tests/CMakeFiles/unittests.dir/test_utilities.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_utilities.cpp [59/62] /usr/bin/cmake -E cmake_symlink_library src/libmorphio.so.0.0.0 src/libmorphio.so.0.0.0 src/libmorphio.so && : [60/62] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMORPHIO_USE_DOUBLE -DMPI_NO_CPPBIND -isystem /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -MD -MT tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -MF tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -c /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests/test_vasculature_morphology.cpp [61/62] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -flto -shared -o binds/python/_morphio.cpython-313-x86_64-linux-gnu.so binds/python/CMakeFiles/_morphio.dir/morphio.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_enums.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_immutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_misc.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_mutable.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_vasculature.cpp.o binds/python/CMakeFiles/_morphio.dir/bind_warnings_exceptions.cpp.o binds/python/CMakeFiles/_morphio.dir/bindings_utils.cpp.o src/libmorphio_static.a -lgcov -lhdf5 && cd /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/binds/python && /usr/bin/strip /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/binds/python/_morphio.cpython-313-x86_64-linux-gnu.so [62/62] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_collection.cpp.o tests/CMakeFiles/unittests.dir/test_immutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_mitochondria.cpp.o tests/CMakeFiles/unittests.dir/test_morphology_readers.cpp.o tests/CMakeFiles/unittests.dir/test_mutable_morphology.cpp.o tests/CMakeFiles/unittests.dir/test_point_utils.cpp.o tests/CMakeFiles/unittests.dir/test_properties.cpp.o tests/CMakeFiles/unittests.dir/test_soma.cpp.o tests/CMakeFiles/unittests.dir/test_swc_reader.cpp.o tests/CMakeFiles/unittests.dir/test_utilities.cpp.o tests/CMakeFiles/unittests.dir/test_vasculature_morphology.cpp.o -o /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/bin/unittests src/libmorphio_static.a -lstdc++fs -lhdf5 -lgcov && : + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' /usr/lib/python3.13/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running build running build_py creating build creating build/lib creating build/lib/morphio copying morphio/__init__.py -> build/lib/morphio creating build/lib/morphio/mut copying morphio/mut/__init__.py -> build/lib/morphio/mut creating build/lib/morphio/vasculature copying morphio/vasculature/__init__.py -> build/lib/morphio/vasculature + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.qLpfTo + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + '[' /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT ++ dirname /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + mkdir -p /builddir/build/BUILD/morphio-3.3.9-build + mkdir /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + DESTDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/collection.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/enums.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/errorMessages.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/exceptions.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/dendritic_spine.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/endoplasmic_reticulum.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/glial_cell.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/mito_section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/mitochondria.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/modifiers.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/morphology.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/soma.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/mut/writers.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/properties.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section_base.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/section_iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/soma.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/tools.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/types.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/iterators.hpp -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/properties.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/section.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vasc/vasculature.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/vector_types.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/version.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/include/morphio/warning_handling.h -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOTargets-noconfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/cmake/MorphIO/MorphIOConfig.cmake -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/libmorphio.so.0.0.0 -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/libmorphio.so -- Installing: /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/_morphio.cpython-313-x86_64-linux-gnu.so + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT --prefix /usr /usr/lib/python3.13/site-packages/setuptools/__init__.py:81: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) WARNING: The wheel package is not available. WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13 creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio copying build/lib/morphio/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut copying build/lib/morphio/mut/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut creating /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature copying build/lib/morphio/vasculature/__init__.py -> /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpvwlt_jql.py' /usr/bin/python3 /tmp/tmpvwlt_jql.py removing /tmp/tmpvwlt_jql.py running install_egg_info running egg_info creating morphio.egg-info writing morphio.egg-info/PKG-INFO writing dependency_links to morphio.egg-info/dependency_links.txt writing requirements to morphio.egg-info/requires.txt writing top-level names to morphio.egg-info/top_level.txt writing manifest file 'morphio.egg-info/SOURCES.txt' reading manifest file 'morphio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '3rdparty/HighFive/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/HighFive/include' warning: no files found matching '*' under directory '3rdparty/HighFive/CMake' warning: no files found matching '*' under directory '3rdparty/HighFive/doc' warning: no files found matching '3rdparty/lexertl14/CMakeLists.txt' warning: no files found matching '*' under directory '3rdparty/lexertl14/include/lexertl' warning: no files found matching '*' under directory 'binds/python/pybind11/include' warning: no files found matching '*.cmake' under directory 'binds/python/pybind11/tools' warning: no files found matching 'binds/python/pybind11/CMakeLists.txt' warning: no files found matching 'binds/python/pybind11/LICENSE' no previously-included directories found matching 'ci' no previously-included directories found matching 'doc' adding license file 'LICENSE.txt' adding license file 'AUTHORS.txt' no previously-included directories found matching 'scripts' no previously-included directories found matching 'examples' writing manifest file 'morphio.egg-info/SOURCES.txt' Copying morphio.egg-info to /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/bin/__pycache__ + '[' /usr/lib/python3.13/site-packages '!=' /usr/lib64/python3.13/site-packages ']' + mv -v /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__ /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__init__.py' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__init__.py' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/__pycache__' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/mut' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut' renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio/vasculature' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature' + mv -v /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/ renamed '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info' -> '/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio-3.3.9-py3.13.egg-info' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.3.9-5.fc42 --unique-debug-suffix -3.3.9-5.fc42.x86_64 --unique-debug-src-base morphio-3.3.9-5.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/morphio-3.3.9-5.fc42.x86_64 628 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/mut/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages/morphio/vasculature/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 37 directories and 135 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/morphio-3.3.9-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LHVIlw + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd MorphIO-3.3.9 + export SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + SETUPTOOLS_SCM_PRETEND_VERSION=3.3.9 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j2 -VV Internal ctest changing into directory: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build/DartConfiguration.tcl Test project /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/redhat-linux-build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: unittests 1: Test command: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/bin/unittests 1: Working Directory: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/tests 1: Test timeout computed to be: 10000000 1: 1: data/single_point_root.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 2 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: section 3 is the only child of section: 0 1: It will be merged with the parent section 1: 1: Warning: Skipping an attempt to write an empty morphology. 1: 1: Warning: writing file without a soma 1: 1: Warning: writing soma set to SOMA_UNDEFINED 1: 1: Soma must be stacked cylinders or a point: see https://github.com/BlueBrain/MorphIO/issues/457 1: 1: Three Point Soma: Only one column has the same coordinates. 1: 1: data/h5/v1/Neuron-no-soma.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/single-neurite.h5:0:warning 1: Warning: no soma found in file 1: 1: data/markers.asc:0:warning 1: Warning: no soma found in file 1: 1: data/annotations.asc:0:warning 1: Warning: no soma found in file 1: 1: Warning: section 1 is the only child of section: 0 1: It will be merged with the parent section 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: Warning: while appending section: 2 to parent: 1 1: The section first point should be parent section last point: 1: : X Y Z Diameter 1: parent last point :[0.000000, 15.900000, 0.000000, 2.400000] 1: child first point :[0.000000, 13.200000, 0.000000, 2.300000] 1: 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: data/h5/v1/simple-dendritric-spine.h5:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: 1: HDF5 GROUP:0:warning 1: Warning: no soma found in file 1: =============================================================================== 1: All tests passed (444 assertions in 57 test cases) 1: 1/1 Test #1: unittests ........................ Passed 0.08 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.08 sec ++ basename /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 + xdir=MorphIO-3.3.9 + cd .. + k='not test_v2' + k='not test_v2 and not test_neurolucida_markers' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read' + k='not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest MorphIO-3.3.9/tests -k 'not test_v2 and not test_neurolucida_markers and not test_marker_with_string and not test_mitochondria and not test_mitochondria_read and not test_dendritic_spine_round_trip_empty_postsynaptic_density' -v ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9 configfile: pyproject.toml collecting ... collected 160 items / 8 deselected / 152 selected MorphIO-3.3.9/tests/test_0_API.py::test_doc_exists PASSED [ 0%] MorphIO-3.3.9/tests/test_0_API.py::test_mut_immut_have_same_methods PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_empty_vasculature PASSED [ 1%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_components_vasculature PASSED [ 2%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_types PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_offsets PASSED [ 3%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section_connectivity PASSED [ 4%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_iterators_vasculature PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_from_pathlib PASSED [ 5%] MorphIO-3.3.9/tests/test_10_vasculature.py::test_section___str__ PASSED [ 6%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path0] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_with_context[collection_path1] PASSED [ 7%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path0] PASSED [ 8%] MorphIO-3.3.9/tests/test_11_collection.py::test_load_from_collection_without_context[collection_path1] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path0] PASSED [ 9%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered[collection_path1] PASSED [ 10%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path0] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_unordered1[collection_path1] PASSED [ 11%] MorphIO-3.3.9/tests/test_11_collection.py::test_container_with_warning_handler PASSED [ 12%] MorphIO-3.3.9/tests/test_1_swc.py::test_build_from_string PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_single_neurite PASSED [ 13%] MorphIO-3.3.9/tests/test_1_swc.py::test_skip_comments PASSED [ 14%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_simple PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_set_raise_warnings PASSED [ 15%] MorphIO-3.3.9/tests/test_1_swc.py::test_repeated_id PASSED [ 16%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_followed_by_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_split_soma PASSED [ 17%] MorphIO-3.3.9/tests/test_1_swc.py::test_weird_indent PASSED [ 18%] MorphIO-3.3.9/tests/test_1_swc.py::test_cyclic PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_simple_reversed PASSED [ 19%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_1_point PASSED [ 20%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_2_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_many_point PASSED [ 21%] MorphIO-3.3.9/tests/test_1_swc.py::test_soma_type_3_point PASSED [ 22%] MorphIO-3.3.9/tests/test_1_swc.py::test_swc_threepoint_soma_tolerance PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_weird_ids PASSED [ 23%] MorphIO-3.3.9/tests/test_1_swc.py::test_multiple_soma PASSED [ 24%] MorphIO-3.3.9/tests/test_1_swc.py::test_disconnected_neurite PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_neurite_wrong_root_point PASSED [ 25%] MorphIO-3.3.9/tests/test_1_swc.py::test_read_duplicate PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_unsupported_section_type PASSED [ 26%] MorphIO-3.3.9/tests/test_1_swc.py::test_root_node_split PASSED [ 27%] MorphIO-3.3.9/tests/test_1_swc.py::test_three_point_soma PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_zero_diameter PASSED [ 28%] MorphIO-3.3.9/tests/test_1_swc.py::test_version PASSED [ 29%] MorphIO-3.3.9/tests/test_1_swc.py::test_no_soma PASSED [ 30%] MorphIO-3.3.9/tests/test_1_swc.py::test_WarningHandlerCollector PASSED [ 30%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_soma PASSED [ 31%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_parse_number_with_plus_symbol PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unknown_token PASSED [ 32%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_point PASSED [ 33%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_multiple_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_neurite_no_soma PASSED [ 34%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_header PASSED [ 35%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_with_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_read_without_duplicates PASSED [ 36%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_explicit_duplicates_with_arbitrary_diameter PASSED [ 37%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_unfinished_file PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_section_single_point PASSED [ 38%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_children PASSED [ 39%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent PASSED [ 40%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_single_point_section_duplicate_parent_complex PASSED [ 41%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_spine1 PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_markers PASSED [ 42%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_string_markers PASSED [ 43%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_invalid_incomplete PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_font PASSED [ 44%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_skip_imagecoord PASSED [ 45%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_Sections_block PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_version PASSED [ 46%] MorphIO-3.3.9/tests/test_2_neurolucida.py::test_load_from_string PASSED [ 47%] MorphIO-3.3.9/tests/test_3_h5.py::test_v1 PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_wrong_section_type PASSED [ 48%] MorphIO-3.3.9/tests/test_3_h5.py::test_soma_no_neurite PASSED [ 49%] MorphIO-3.3.9/tests/test_3_h5.py::test_single_children PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_heterogeneous_sections PASSED [ 50%] MorphIO-3.3.9/tests/test_4_immut.py::test_components PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_is_root PASSED [ 51%] MorphIO-3.3.9/tests/test_4_immut.py::test_distance PASSED [ 52%] MorphIO-3.3.9/tests/test_4_immut.py::test_iter PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_offsets PASSED [ 53%] MorphIO-3.3.9/tests/test_4_immut.py::test_connectivity PASSED [ 54%] MorphIO-3.3.9/tests/test_4_immut.py::test_endoplasmic_reticulum PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section___str__ PASSED [ 55%] MorphIO-3.3.9/tests/test_4_immut.py::test_section_has_same_shape PASSED [ 56%] MorphIO-3.3.9/tests/test_4_immut.py::test_from_pathlib PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_more_iter PASSED [ 57%] MorphIO-3.3.9/tests/test_4_immut.py::test_glia PASSED [ 58%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine PASSED [ 59%] MorphIO-3.3.9/tests/test_4_immut.py::test_dendritic_spine_add_root_section PASSED [ 59%] MorphIO-3.3.9/tests/test_5_mut.py::test_heterogeneous_sections PASSED [ 60%] MorphIO-3.3.9/tests/test_5_mut.py::test_point_level PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_connectivity PASSED [ 61%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_neurite PASSED [ 62%] MorphIO-3.3.9/tests/test_5_mut.py::test_single_neurite PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_child_section PASSED [ 63%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_no_duplicate PASSED [ 64%] MorphIO-3.3.9/tests/test_5_mut.py::test_mut_copy_ctor PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_build_read_only PASSED [ 65%] MorphIO-3.3.9/tests/test_5_mut.py::test_mutable_immutable_equivalence PASSED [ 66%] MorphIO-3.3.9/tests/test_5_mut.py::test_sections_are_not_dereferenced PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_append_mutable_section PASSED [ 67%] MorphIO-3.3.9/tests/test_5_mut.py::test_iterators PASSED [ 68%] MorphIO-3.3.9/tests/test_5_mut.py::test_non_C_nparray PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_annotation PASSED [ 69%] MorphIO-3.3.9/tests/test_5_mut.py::test_empty_sibling PASSED [ 70%] MorphIO-3.3.9/tests/test_5_mut.py::test_nested_single_child PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_section___str__ PASSED [ 71%] MorphIO-3.3.9/tests/test_5_mut.py::test_from_pathlib PASSED [ 72%] MorphIO-3.3.9/tests/test_5_mut.py::test_endoplasmic_reticulum PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_unifurcations PASSED [ 73%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection PASSED [ 74%] MorphIO-3.3.9/tests/test_5_mut.py::test_remove_rootsection_in_loop PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia PASSED [ 75%] MorphIO-3.3.9/tests/test_5_mut.py::test_glia_round_trip PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine PASSED [ 76%] MorphIO-3.3.9/tests/test_5_mut.py::test_dendritic_spine_round_trip PASSED [ 77%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_destroyed_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_access_properties_no_morphology PASSED [ 78%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_copy_single_section PASSED [ 79%] MorphIO-3.3.9/tests/test_5_mut.py::test_lifetime_iteration_fails_with_orphan_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section PASSED [ 80%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_non_root_section_multiple PASSED [ 81%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__maintain_children_order_root_section PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__unifurcation_bridge PASSED [ 82%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__remove_all_children PASSED [ 83%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__append_delete PASSED [ 84%] MorphIO-3.3.9/tests/test_5_mut.py::test_delete_section__traversals PASSED [ 84%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_empty_file PASSED [ 85%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_undefined_soma PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_basic PASSED [ 86%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_basic PASSED [ 87%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_asc_h5 PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_merge_only_child_swc PASSED [ 88%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_perimeter PASSED [ 89%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_no_soma PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma__points_no_diameters PASSED [ 90%] MorphIO-3.3.9/tests/test_6_writers.py::test_duplicate_different_diameter PASSED [ 91%] MorphIO-3.3.9/tests/test_6_writers.py::test_single_point_root_section PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_custom_property__throws PASSED [ 92%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_types PASSED [ 93%] MorphIO-3.3.9/tests/test_6_writers.py::test_write_soma_invariants PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_modifier PASSED [ 94%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order PASSED [ 95%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_nrn_order_stability PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_two_point_section PASSED [ 96%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_soma_sphere PASSED [ 97%] MorphIO-3.3.9/tests/test_7_modifiers.py::test_no_duplicate PASSED [ 98%] MorphIO-3.3.9/tests/test_8_all_morphologies.py::test_all SKIPPED (ba...) [ 98%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_stacked_cylinder PASSED [ 99%] MorphIO-3.3.9/tests/test_9_surfaces.py::test_contour PASSED [100%] ================= 151 passed, 1 skipped, 8 deselected in 0.72s ================= + RPM_EC=0 ++ jobs -p + exit 0 Processing files: morphio-3.3.9-5.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wTpwNY + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: libmorphio.so.0.0.0()(64bit) morphio = 3.3.9-5.fc42 morphio(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: morphio-devel-3.3.9-5.fc42.x86_64 Provides: cmake(MorphIO) cmake(morphio) morphio-devel = 3.3.9-5.fc42 morphio-devel(x86-64) = 3.3.9-5.fc42 morphio-static = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libmorphio.so.0.0.0()(64bit) Processing files: python3-morphio-3.3.9-5.fc42.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.JDfzYf + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/python3-morphio + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-morphio = 3.3.9-5.fc42 python3-morphio = 3.3.9-5.fc42 python3-morphio(x86-64) = 3.3.9-5.fc42 python3.13-morphio = 3.3.9-5.fc42 python3.13dist(morphio) = 3.3.9 python3dist(morphio) = 3.3.9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.14.1 rtld(GNU_HASH) Processing files: morphio-doc-3.3.9-5.fc42.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Wid9F9 + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + DOCDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/AUTHORS.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/CHANGELOG.md /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/CONTRIBUTING.md /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/README.rst /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/examples /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/doc/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.HdAQTk + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + cd MorphIO-3.3.9 + LICENSEDIR=/builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + cp -pr /builddir/build/BUILD/morphio-3.3.9-build/MorphIO-3.3.9/LICENSE.txt /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT/usr/share/licenses/morphio-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: morphio-doc = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debugsource-3.3.9-5.fc42.x86_64 Provides: morphio-debugsource = 3.3.9-5.fc42 morphio-debugsource(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: morphio-debuginfo-3.3.9-5.fc42.x86_64 Provides: debuginfo(build-id) = bc16435cbbcf1ccf6c8202b5c729d03ae1ee7f2e libmorphio.so.0.0.0-3.3.9-5.fc42.x86_64.debug()(64bit) morphio-debuginfo = 3.3.9-5.fc42 morphio-debuginfo(x86-64) = 3.3.9-5.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: morphio-debugsource(x86-64) = 3.3.9-5.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/morphio-3.3.9-build/BUILDROOT Wrote: /builddir/build/RPMS/python3-morphio-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-debugsource-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-devel-3.3.9-5.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/morphio-doc-3.3.9-5.fc42.noarch.rpm Wrote: /builddir/build/RPMS/morphio-debuginfo-3.3.9-5.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.ImPqyG + umask 022 + cd /builddir/build/BUILD/morphio-3.3.9-build + test -d /builddir/build/BUILD/morphio-3.3.9-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/morphio-3.3.9-build + rm -rf /builddir/build/BUILD/morphio-3.3.9-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild morphio-3.3.9-5.fc42.src.rpm Finish: build phase for morphio-3.3.9-5.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1729865458.828121/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/morphio-3.3.9-5.fc42.src.rpm) Config(child) 5 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "morphio-doc", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "noarch" }, { "name": "morphio-debugsource", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio-debuginfo", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio-devel", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" }, { "name": "morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "src" }, { "name": "python3-morphio", "epoch": null, "version": "3.3.9", "release": "5.fc42", "arch": "x86_64" } ] } RPMResults finished