Warning: Permanently added '44.197.172.138' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/9756643-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.6 PID: 14097 Logging PID: 14099 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 9756643, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '31ff7693649a205caa3578e4ac11bb96151d361c', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/hobbes1069/fltk/seaview', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seaview', 'package_version': '5.1-2', 'project_dirname': 'fltk', 'project_name': 'fltk', 'project_owner': 'hobbes1069', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/hobbes1069/fltk/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'hobbes1069/fltk--hobbes1069', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'hobbes1069', 'tags': [], 'task_id': '9756643-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/hobbes1069/fltk/seaview /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/hobbes1069/fltk/seaview', '/var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview'... Running: git checkout 31ff7693649a205caa3578e4ac11bb96151d361c -- cmd: ['git', 'checkout', '31ff7693649a205caa3578e4ac11bb96151d361c', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview rc: 0 stdout: stderr: Note: switching to '31ff7693649a205caa3578e4ac11bb96151d361c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 31ff769 automatic import of seaview Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seaview_5.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o seaview_5.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/hobbes1069/fltk/seaview/seaview_5.1.tar.gz/md5/57853e73a4e99b15fc1c1b8d50869d76/seaview_5.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 460k 100 460k 0 0 38.2M 0 --:--:-- --:--:-- --:--:-- 40.8M INFO: Reading stdout from command: md5sum seaview_5.1.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1762037905.076607 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.5 starting (python version = 3.13.7, NVR = mock-6.5-1.fc42), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1762037905.076607 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview/seaview.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.5 INFO: Mock Version: 6.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1762037905.076607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-867ccc1c-6955-42bc-ac0a-e67d86a43120 INFO: Checking that 3335951aaec4c584683d4843ebaab1bea32b867580f8daa27b20b45dde85976a image matches host's architecture INFO: Copy content of container 3335951aaec4c584683d4843ebaab1bea32b867580f8daa27b20b45dde85976a to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1762037905.076607/root INFO: mounting 3335951aaec4c584683d4843ebaab1bea32b867580f8daa27b20b45dde85976a with podman image mount INFO: image 3335951aaec4c584683d4843ebaab1bea32b867580f8daa27b20b45dde85976a as /var/lib/containers/storage/overlay/98f4144d2961bc7d4084f373d56f1e0d5bd2fc5d809e21e666883f5b88b9accf/merged INFO: umounting image 3335951aaec4c584683d4843ebaab1bea32b867580f8daa27b20b45dde85976a (/var/lib/containers/storage/overlay/98f4144d2961bc7d4084f373d56f1e0d5bd2fc5d809e21e666883f5b88b9accf/merged) with podman image umount INFO: Removing image mock-bootstrap-867ccc1c-6955-42bc-ac0a-e67d86a43120 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1762037905.076607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 117.1 KiB/s | 1.5 KiB | 00m00s fedora 100% | 97.2 KiB/s | 26.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.3.0-2.fc43 fedora 8.4 MiB bzip2 x86_64 1.0.8-21.fc43 fedora 95.3 KiB coreutils x86_64 9.8-3.fc44 fedora 5.4 MiB cpio x86_64 2.15-6.fc43 fedora 1.1 MiB diffutils x86_64 3.12-3.fc43 fedora 1.6 MiB fedora-release-common noarch 44-0.5 fedora 20.6 KiB findutils x86_64 1:4.10.0-6.fc43 fedora 1.8 MiB gawk x86_64 5.3.2-2.fc43 fedora 1.8 MiB glibc-minimal-langpack x86_64 2.42.9000-7.fc44 fedora 0.0 B grep x86_64 3.12-2.fc43 fedora 1.0 MiB gzip x86_64 1.14-1.fc44 fedora 397.8 KiB info x86_64 7.2-6.fc43 fedora 353.9 KiB patch x86_64 2.8-2.fc43 fedora 222.8 KiB redhat-rpm-config noarch 343-14.fc44 fedora 183.3 KiB rpm-build x86_64 6.0.0-1.fc44 fedora 287.4 KiB sed x86_64 4.9-6.fc44 fedora 857.3 KiB shadow-utils x86_64 2:4.18.0-3.fc43 fedora 3.9 MiB tar x86_64 2:1.35-6.fc43 fedora 2.9 MiB unzip x86_64 6.0-68.fc44 fedora 390.3 KiB util-linux x86_64 2.41.2-7.fc44 fedora 3.5 MiB which x86_64 2.23-3.fc43 fedora 83.5 KiB xz x86_64 1:5.8.1-2.fc43 fedora 1.3 MiB Installing dependencies: add-determinism x86_64 0.7.2-2.fc44 fedora 2.3 MiB alternatives x86_64 1.33-3.fc44 fedora 62.2 KiB ansible-srpm-macros noarch 1-18.1.fc43 fedora 35.7 KiB audit-libs x86_64 4.1.2-2.fc44 fedora 378.8 KiB binutils x86_64 2.45.50-5.fc44 fedora 27.1 MiB build-reproducibility-srpm-macros noarch 0.7.2-2.fc44 fedora 1.2 KiB bzip2-libs x86_64 1.0.8-21.fc43 fedora 80.6 KiB ca-certificates noarch 2025.2.80_v9.0.304-2.fc44 fedora 2.7 MiB coreutils-common x86_64 9.8-3.fc44 fedora 11.1 MiB crypto-policies noarch 20250714-5.gitcd6043a.fc44 fedora 146.9 KiB curl x86_64 8.17.0~rc2-1.fc44 fedora 474.2 KiB cyrus-sasl-lib x86_64 2.1.28-33.fc44 fedora 2.3 MiB debugedit x86_64 5.2-3.fc44 fedora 214.0 KiB dwz x86_64 0.16-2.fc43 fedora 287.1 KiB ed x86_64 1.22.2-1.fc44 fedora 148.1 KiB efi-srpm-macros noarch 6-5.fc44 fedora 40.2 KiB elfutils x86_64 0.194-1.fc44 fedora 2.9 MiB elfutils-debuginfod-client x86_64 0.194-1.fc44 fedora 84.0 KiB elfutils-default-yama-scope noarch 0.194-1.fc44 fedora 1.8 KiB elfutils-libelf x86_64 0.194-1.fc44 fedora 1.1 MiB elfutils-libs x86_64 0.194-1.fc44 fedora 687.5 KiB fedora-gpg-keys noarch 44-0.1 fedora 131.2 KiB fedora-release noarch 44-0.5 fedora 0.0 B fedora-release-identity-basic noarch 44-0.5 fedora 664.0 B fedora-repos noarch 44-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 44-0.1 fedora 2.2 KiB file x86_64 5.46-8.fc44 fedora 100.2 KiB file-libs x86_64 5.46-8.fc44 fedora 11.9 MiB filesystem x86_64 3.18-50.fc43 fedora 112.0 B filesystem-srpm-macros noarch 3.18-50.fc43 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-1.fc44 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-3.fc43 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-15.fc43 fedora 144.0 B gap-srpm-macros noarch 2-1.fc44 fedora 2.1 KiB gdb-minimal x86_64 16.3-6.fc44 fedora 13.3 MiB gdbm-libs x86_64 1:1.23-10.fc43 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-3.fc43 fedora 779.0 B glibc x86_64 2.42.9000-7.fc44 fedora 6.7 MiB glibc-common x86_64 2.42.9000-7.fc44 fedora 1.0 MiB glibc-gconv-extra x86_64 2.42.9000-7.fc44 fedora 7.2 MiB gmp x86_64 1:6.3.0-4.fc44 fedora 815.3 KiB gnat-srpm-macros noarch 6-8.fc43 fedora 1.0 KiB gnulib-l10n noarch 20241231-1.fc44 fedora 655.0 KiB gnupg2 x86_64 2.4.8-4.fc43 fedora 6.5 MiB gnupg2-dirmngr x86_64 2.4.8-4.fc43 fedora 618.4 KiB gnupg2-gpg-agent x86_64 2.4.8-4.fc43 fedora 671.4 KiB gnupg2-gpgconf x86_64 2.4.8-4.fc43 fedora 250.0 KiB gnupg2-keyboxd x86_64 2.4.8-4.fc43 fedora 201.4 KiB gnupg2-verify x86_64 2.4.8-4.fc43 fedora 348.5 KiB gnutls x86_64 3.8.10-5.fc44 fedora 3.8 MiB go-srpm-macros noarch 3.8.0-1.fc44 fedora 61.9 KiB gpgverify noarch 2.2-3.fc43 fedora 8.7 KiB ima-evm-utils-libs x86_64 1.6.2-7.fc44 fedora 60.7 KiB jansson x86_64 2.14-3.fc43 fedora 89.1 KiB java-srpm-macros noarch 1-7.fc43 fedora 870.0 B json-c x86_64 0.18-7.fc43 fedora 82.7 KiB kernel-srpm-macros noarch 1.0-27.fc43 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-6.fc43 fedora 54.3 KiB krb5-libs x86_64 1.21.3-10.fc44 fedora 2.3 MiB libacl x86_64 2.3.2-4.fc43 fedora 35.9 KiB libarchive x86_64 3.8.2-1.fc44 fedora 955.2 KiB libassuan x86_64 2.5.7-4.fc43 fedora 163.8 KiB libattr x86_64 2.5.2-6.fc43 fedora 24.4 KiB libblkid x86_64 2.41.2-7.fc44 fedora 262.4 KiB libbrotli x86_64 1.1.0-10.fc44 fedora 833.3 KiB libcap x86_64 2.77-1.fc44 fedora 209.1 KiB libcap-ng x86_64 0.8.5-8.fc44 fedora 68.9 KiB libcom_err x86_64 1.47.3-2.fc43 fedora 63.1 KiB libcurl x86_64 8.17.0~rc2-1.fc44 fedora 923.4 KiB libeconf x86_64 0.7.9-2.fc43 fedora 64.9 KiB libevent x86_64 2.1.12-16.fc43 fedora 883.1 KiB libfdisk x86_64 2.41.2-7.fc44 fedora 380.4 KiB libffi x86_64 3.5.2-1.fc44 fedora 83.8 KiB libfsverity x86_64 1.6-3.fc43 fedora 28.5 KiB libgcc x86_64 15.2.1-3.fc44 fedora 266.6 KiB libgcrypt x86_64 1.11.1-2.fc43 fedora 1.6 MiB libgomp x86_64 15.2.1-3.fc44 fedora 541.5 KiB libgpg-error x86_64 1.56-1.fc44 fedora 916.6 KiB libidn2 x86_64 2.3.8-2.fc43 fedora 552.5 KiB libksba x86_64 1.6.7-4.fc43 fedora 398.5 KiB liblastlog2 x86_64 2.41.2-7.fc44 fedora 33.9 KiB libmount x86_64 2.41.2-7.fc44 fedora 372.7 KiB libnghttp2 x86_64 1.68.0-1.fc44 fedora 162.2 KiB libpkgconf x86_64 2.3.0-3.fc43 fedora 78.1 KiB libpsl x86_64 0.21.5-6.fc43 fedora 76.4 KiB libselinux x86_64 3.9-5.fc44 fedora 193.1 KiB libselinux-utils x86_64 3.9-5.fc44 fedora 309.0 KiB libsemanage x86_64 3.9-4.fc44 fedora 308.5 KiB libsepol x86_64 3.9-2.fc43 fedora 822.0 KiB libsmartcols x86_64 2.41.2-7.fc44 fedora 180.5 KiB libssh x86_64 0.11.3-1.fc44 fedora 567.1 KiB libssh-config noarch 0.11.3-1.fc44 fedora 277.0 B libstdc++ x86_64 15.2.1-3.fc44 fedora 2.8 MiB libtasn1 x86_64 4.20.0-2.fc43 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-7.fc43 fedora 70.1 KiB libunistring x86_64 1.1-10.fc43 fedora 1.7 MiB libusb1 x86_64 1.0.29-4.fc44 fedora 171.3 KiB libuuid x86_64 2.41.2-7.fc44 fedora 37.3 KiB libverto x86_64 0.3.2-11.fc43 fedora 25.4 KiB libxcrypt x86_64 4.4.38-9.fc44 fedora 284.4 KiB libxml2 x86_64 2.12.10-5.fc44 fedora 1.7 MiB libzstd x86_64 1.5.7-3.fc44 fedora 940.3 KiB linkdupes x86_64 0.7.2-2.fc44 fedora 838.7 KiB lua-libs x86_64 5.4.8-2.fc43 fedora 280.8 KiB lua-srpm-macros noarch 1-16.fc43 fedora 1.3 KiB lz4-libs x86_64 1.10.0-3.fc43 fedora 161.4 KiB mpfr x86_64 4.2.2-2.fc43 fedora 832.8 KiB ncurses-base noarch 6.5-7.20250614.fc43 fedora 328.1 KiB ncurses-libs x86_64 6.5-7.20250614.fc43 fedora 946.3 KiB nettle x86_64 3.10.1-2.fc43 fedora 790.6 KiB npth x86_64 1.8-3.fc43 fedora 49.6 KiB ocaml-srpm-macros noarch 11-2.fc43 fedora 1.9 KiB openblas-srpm-macros noarch 2-20.fc43 fedora 112.0 B openldap x86_64 2.6.10-4.fc44 fedora 659.8 KiB openssl-libs x86_64 1:3.5.4-1.fc44 fedora 8.9 MiB p11-kit x86_64 0.25.8-1.fc44 fedora 2.3 MiB p11-kit-trust x86_64 0.25.8-1.fc44 fedora 446.5 KiB package-notes-srpm-macros noarch 0.5-14.fc43 fedora 1.6 KiB pam-libs x86_64 1.7.1-3.fc43 fedora 126.8 KiB pcre2 x86_64 10.46-1.fc44 fedora 697.7 KiB pcre2-syntax noarch 10.46-1.fc44 fedora 275.3 KiB perl-srpm-macros noarch 1-60.fc43 fedora 861.0 B pkgconf x86_64 2.3.0-3.fc43 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-3.fc43 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-3.fc43 fedora 989.0 B policycoreutils x86_64 3.9-5.fc44 fedora 683.5 KiB popt x86_64 1.19-9.fc43 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250616-2.fc43 fedora 69.1 KiB pyproject-srpm-macros noarch 1.18.5-1.fc44 fedora 1.9 KiB python-srpm-macros noarch 3.14-9.fc44 fedora 51.6 KiB qt5-srpm-macros noarch 5.15.17-2.fc43 fedora 500.0 B qt6-srpm-macros noarch 6.10.0-1.fc44 fedora 464.0 B readline x86_64 8.3-2.fc43 fedora 511.7 KiB rpm x86_64 6.0.0-1.fc44 fedora 3.1 MiB rpm-build-libs x86_64 6.0.0-1.fc44 fedora 268.4 KiB rpm-libs x86_64 6.0.0-1.fc44 fedora 933.8 KiB rpm-plugin-selinux x86_64 6.0.0-1.fc44 fedora 12.0 KiB rpm-sequoia x86_64 1.9.0-2.fc43 fedora 2.5 MiB rpm-sign-libs x86_64 6.0.0-1.fc44 fedora 39.7 KiB rust-srpm-macros noarch 26.4-1.fc44 fedora 4.8 KiB selinux-policy noarch 42.14-1.fc44 fedora 31.9 KiB selinux-policy-targeted noarch 42.14-1.fc44 fedora 18.7 MiB setup noarch 2.15.0-27.fc44 fedora 724.9 KiB sqlite-libs x86_64 3.50.4-1.fc44 fedora 1.5 MiB systemd-libs x86_64 258.1-2.fc44 fedora 2.3 MiB systemd-standalone-sysusers x86_64 258.1-2.fc44 fedora 293.5 KiB tpm2-tss x86_64 4.1.3-8.fc43 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0.4.2-1.fc43 fedora 8.3 KiB util-linux-core x86_64 2.41.2-7.fc44 fedora 1.5 MiB xxhash-libs x86_64 0.8.3-3.fc43 fedora 90.2 KiB xz-libs x86_64 1:5.8.1-2.fc43 fedora 217.8 KiB zig-srpm-macros noarch 1-5.fc43 fedora 1.1 KiB zip x86_64 3.0-44.fc43 fedora 694.5 KiB zlib-ng-compat x86_64 2.2.5-2.fc44 fedora 137.6 KiB zstd x86_64 1.5.7-3.fc44 fedora 506.2 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 177 packages Total size of inbound packages is 67 MiB. Need to download 0 B. After this operation, 219 MiB extra will be used (install 219 MiB, remove 0 B). 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Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x31645531: UserID : "Fedora (43) " Fingerprint: C6E7F081CF80E13146676E88829B606631645531 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. [ 1/179] Verify package files 100% | 779.0 B/s | 177.0 B | 00m00s [ 2/179] Prepare transaction 100% | 3.8 KiB/s | 177.0 B | 00m00s [ 3/179] Installing libgcc-0:15.2.1-3. 100% | 262.0 MiB/s | 268.3 KiB | 00m00s [ 4/179] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/179] Installing publicsuffix-list- 100% | 0.0 B/s | 69.8 KiB | 00m00s [ 6/179] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 7/179] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/179] Installing fedora-gpg-keys-0: 100% | 58.3 MiB/s | 179.0 KiB | 00m00s [ 9/179] Installing fedora-repos-0:44- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/179] Installing fedora-release-com 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 11/179] Installing fedora-release-0:4 100% | 24.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-27.fc44.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 12/179] Installing setup-0:2.15.0-27. 100% | 54.9 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/179] Installing filesystem-0:3.18- 100% | 3.1 MiB/s | 212.8 KiB | 00m00s [ 14/179] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 15/179] Installing pcre2-syntax-0:10. 100% | 271.2 MiB/s | 277.8 KiB | 00m00s [ 16/179] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 17/179] Installing coreutils-common-0 100% | 429.8 MiB/s | 11.2 MiB | 00m00s [ 18/179] Installing ncurses-base-0:6.5 100% | 115.1 MiB/s | 353.5 KiB | 00m00s [ 19/179] Installing bash-0:5.3.0-2.fc4 100% | 312.2 MiB/s | 8.4 MiB | 00m00s [ 20/179] Installing glibc-common-0:2.4 100% | 73.0 MiB/s | 1.0 MiB | 00m00s [ 21/179] Installing glibc-gconv-extra- 100% | 332.5 MiB/s | 7.3 MiB | 00m00s [ 22/179] Installing glibc-0:2.42.9000- 100% | 209.2 MiB/s | 6.7 MiB | 00m00s [ 23/179] Installing ncurses-libs-0:6.5 100% | 310.1 MiB/s | 952.8 KiB | 00m00s [ 24/179] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 25/179] Installing zlib-ng-compat-0:2 100% | 0.0 B/s | 138.4 KiB | 00m00s [ 26/179] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 81.7 KiB | 00m00s [ 27/179] Installing libgpg-error-0:1.5 100% | 69.3 MiB/s | 922.5 KiB | 00m00s [ 28/179] Installing libstdc++-0:15.2.1 100% | 474.0 MiB/s | 2.8 MiB | 00m00s [ 29/179] Installing libassuan-0:2.5.7- 100% | 161.7 MiB/s | 165.6 KiB | 00m00s [ 30/179] Installing libgcrypt-0:1.11.1 100% | 393.8 MiB/s | 1.6 MiB | 00m00s [ 31/179] Installing readline-0:8.3-2.f 100% | 501.8 MiB/s | 513.9 KiB | 00m00s [ 32/179] Installing gmp-1:6.3.0-4.fc44 100% | 399.2 MiB/s | 817.5 KiB | 00m00s [ 33/179] Installing xz-libs-1:5.8.1-2. 100% | 213.8 MiB/s | 218.9 KiB | 00m00s [ 34/179] Installing libuuid-0:2.41.2-7 100% | 0.0 B/s | 38.5 KiB | 00m00s [ 35/179] Installing popt-0:1.19-9.fc43 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 36/179] Installing libzstd-0:1.5.7-3. 100% | 459.7 MiB/s | 941.6 KiB | 00m00s [ 37/179] Installing elfutils-libelf-0: 100% | 560.5 MiB/s | 1.1 MiB | 00m00s [ 38/179] Installing npth-0:1.8-3.fc43. 100% | 0.0 B/s | 50.7 KiB | 00m00s [ 39/179] Installing libblkid-0:2.41.2- 100% | 257.4 MiB/s | 263.5 KiB | 00m00s [ 40/179] Installing libxcrypt-0:4.4.38 100% | 280.4 MiB/s | 287.1 KiB | 00m00s [ 41/179] Installing libsepol-0:3.9-2.f 100% | 401.8 MiB/s | 822.9 KiB | 00m00s [ 42/179] Installing sqlite-libs-0:3.50 100% | 379.1 MiB/s | 1.5 MiB | 00m00s [ 43/179] Installing gnupg2-gpgconf-0:2 100% | 22.4 MiB/s | 252.0 KiB | 00m00s [ 44/179] Installing libattr-0:2.5.2-6. 100% | 0.0 B/s | 25.4 KiB | 00m00s [ 45/179] Installing libacl-0:2.3.2-4.f 100% | 0.0 B/s | 36.8 KiB | 00m00s [ 46/179] Installing pcre2-0:10.46-1.fc 100% | 341.4 MiB/s | 699.1 KiB | 00m00s [ 47/179] Installing libselinux-0:3.9-5 100% | 189.8 MiB/s | 194.4 KiB | 00m00s [ 48/179] Installing grep-0:3.12-2.fc43 100% | 71.6 MiB/s | 1.0 MiB | 00m00s [ 49/179] Installing sed-0:4.9-6.fc44.x 100% | 65.0 MiB/s | 865.5 KiB | 00m00s [ 50/179] Installing findutils-1:4.10.0 100% | 123.9 MiB/s | 1.9 MiB | 00m00s [ 51/179] Installing libtasn1-0:4.20.0- 100% | 173.9 MiB/s | 178.1 KiB | 00m00s [ 52/179] Installing libunistring-0:1.1 100% | 431.7 MiB/s | 1.7 MiB | 00m00s [ 53/179] Installing libidn2-0:2.3.8-2. 100% | 77.9 MiB/s | 558.7 KiB | 00m00s [ 54/179] Installing crypto-policies-0: 100% | 42.0 MiB/s | 172.0 KiB | 00m00s [ 55/179] Installing xz-1:5.8.1-2.fc43. 100% | 83.2 MiB/s | 1.3 MiB | 00m00s [ 56/179] Installing libmount-0:2.41.2- 100% | 365.0 MiB/s | 373.8 KiB | 00m00s [ 57/179] Installing gnupg2-verify-0:2. 100% | 31.1 MiB/s | 349.9 KiB | 00m00s [ 58/179] Installing dwz-0:0.16-2.fc43. 100% | 25.6 MiB/s | 288.5 KiB | 00m00s [ 59/179] Installing mpfr-0:4.2.2-2.fc4 100% | 407.4 MiB/s | 834.4 KiB | 00m00s [ 60/179] Installing gawk-0:5.3.2-2.fc4 100% | 113.5 MiB/s | 1.8 MiB | 00m00s [ 61/179] Installing libksba-0:1.6.7-4. 100% | 391.7 MiB/s | 401.1 KiB | 00m00s [ 62/179] Installing unzip-0:6.0-68.fc4 100% | 35.0 MiB/s | 393.8 KiB | 00m00s [ 63/179] Installing file-libs-0:5.46-8 100% | 790.5 MiB/s | 11.9 MiB | 00m00s [ 64/179] Installing file-0:5.46-8.fc44 100% | 9.0 MiB/s | 101.7 KiB | 00m00s [ 65/179] Installing diffutils-0:3.12-3 100% | 111.5 MiB/s | 1.6 MiB | 00m00s [ 66/179] Installing libeconf-0:0.7.9-2 100% | 0.0 B/s | 66.5 KiB | 00m00s [ 67/179] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 70.8 KiB | 00m00s [ 68/179] Installing audit-libs-0:4.1.2 100% | 372.6 MiB/s | 381.5 KiB | 00m00s [ 69/179] Installing pam-libs-0:1.7.1-3 100% | 126.0 MiB/s | 129.0 KiB | 00m00s [ 70/179] Installing libcap-0:2.77-1.fc 100% | 19.0 MiB/s | 214.3 KiB | 00m00s [ 71/179] Installing systemd-libs-0:258 100% | 386.8 MiB/s | 2.3 MiB | 00m00s [ 72/179] Installing libsemanage-0:3.9- 100% | 303.0 MiB/s | 310.2 KiB | 00m00s [ 73/179] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.6 KiB | 00m00s [ 74/179] Installing lua-libs-0:5.4.8-2 100% | 275.3 MiB/s | 281.9 KiB | 00m00s [ 75/179] Installing json-c-0:0.18-7.fc 100% | 0.0 B/s | 84.0 KiB | 00m00s [ 76/179] Installing libffi-0:3.5.2-1.f 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [ 77/179] Installing p11-kit-0:0.25.8-1 100% | 134.7 MiB/s | 2.3 MiB | 00m00s [ 78/179] Installing alternatives-0:1.3 100% | 6.2 MiB/s | 63.8 KiB | 00m00s [ 79/179] Installing p11-kit-trust-0:0. 100% | 27.4 MiB/s | 448.3 KiB | 00m00s [ 80/179] Installing openssl-libs-1:3.5 100% | 445.5 MiB/s | 8.9 MiB | 00m00s [ 81/179] Installing coreutils-0:9.8-3. 100% | 195.5 MiB/s | 5.5 MiB | 00m00s [ 82/179] Installing ca-certificates-0: 100% | 2.4 MiB/s | 2.5 MiB | 00m01s [ 83/179] Installing gzip-0:1.14-1.fc44 100% | 30.3 MiB/s | 403.3 KiB | 00m00s [ 84/179] Installing rpm-sequoia-0:1.9. 100% | 413.1 MiB/s | 2.5 MiB | 00m00s [ 85/179] Installing libfsverity-0:1.6- 100% | 0.0 B/s | 29.5 KiB | 00m00s [ 86/179] Installing libevent-0:2.1.12- 100% | 288.7 MiB/s | 886.8 KiB | 00m00s [ 87/179] Installing util-linux-core-0: 100% | 98.6 MiB/s | 1.5 MiB | 00m00s [ 88/179] Installing libusb1-0:1.0.29-4 100% | 28.1 MiB/s | 172.9 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-8.fc43.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [ 89/179] Installing tpm2-tss-0:4.1.3-8 100% | 314.4 MiB/s | 1.6 MiB | 00m00s [ 90/179] Installing ima-evm-utils-libs 100% | 0.0 B/s | 62.0 KiB | 00m00s [ 91/179] Installing gnupg2-gpg-agent-0 100% | 38.8 MiB/s | 675.4 KiB | 00m00s [ 92/179] Installing systemd-standalone 100% | 26.1 MiB/s | 294.1 KiB | 00m00s [ 93/179] Installing rpm-libs-0:6.0.0-1 100% | 304.5 MiB/s | 935.3 KiB | 00m00s [ 94/179] Installing zip-0:3.0-44.fc43. 100% | 56.8 MiB/s | 698.4 KiB | 00m00s [ 95/179] Installing gnupg2-keyboxd-0:2 100% | 49.5 MiB/s | 202.7 KiB | 00m00s [ 96/179] Installing libpsl-0:0.21.5-6. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 97/179] Installing tar-2:1.35-6.fc43. 100% | 164.3 MiB/s | 3.0 MiB | 00m00s [ 98/179] Installing linkdupes-0:0.7.2- 100% | 68.4 MiB/s | 840.1 KiB | 00m00s [ 99/179] Installing libselinux-utils-0 100% | 26.3 MiB/s | 323.4 KiB | 00m00s [100/179] Installing liblastlog2-0:2.41 100% | 8.8 MiB/s | 35.9 KiB | 00m00s [101/179] Installing libfdisk-0:2.41.2- 100% | 186.3 MiB/s | 381.6 KiB | 00m00s [102/179] Installing util-linux-0:2.41. 100% | 119.1 MiB/s | 3.6 MiB | 00m00s [103/179] Installing policycoreutils-0: 100% | 34.8 MiB/s | 711.8 KiB | 00m00s [104/179] Installing selinux-policy-0:4 100% | 2.0 MiB/s | 33.5 KiB | 00m00s [105/179] Installing selinux-policy-tar 100% | 225.8 MiB/s | 14.9 MiB | 00m00s [106/179] Installing zstd-0:1.5.7-3.fc4 100% | 35.6 MiB/s | 509.8 KiB | 00m00s [107/179] Installing libxml2-0:2.12.10- 100% | 121.7 MiB/s | 1.7 MiB | 00m00s [108/179] Installing nettle-0:3.10.1-2. 100% | 387.5 MiB/s | 793.7 KiB | 00m00s [109/179] Installing gnutls-0:3.8.10-5. 100% | 427.0 MiB/s | 3.8 MiB | 00m00s [110/179] Installing bzip2-0:1.0.8-21.f 100% | 8.9 MiB/s | 99.8 KiB | 00m00s [111/179] Installing add-determinism-0: 100% | 153.7 MiB/s | 2.3 MiB | 00m00s [112/179] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [113/179] Installing cpio-0:2.15-6.fc43 100% | 78.5 MiB/s | 1.1 MiB | 00m00s [114/179] Installing ed-0:1.22.2-1.fc44 100% | 13.3 MiB/s | 150.4 KiB | 00m00s [115/179] Installing patch-0:2.8-2.fc43 100% | 19.9 MiB/s | 224.3 KiB | 00m00s [116/179] Installing lz4-libs-0:1.10.0- 100% | 158.6 MiB/s | 162.5 KiB | 00m00s [117/179] Installing libarchive-0:3.8.2 100% | 311.6 MiB/s | 957.2 KiB | 00m00s [118/179] Installing libgomp-0:15.2.1-3 100% | 530.1 MiB/s | 542.8 KiB | 00m00s [119/179] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.2 KiB | 00m00s [120/179] Installing gdbm-libs-1:1.23-1 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [121/179] Installing cyrus-sasl-lib-0:2 100% | 143.7 MiB/s | 2.3 MiB | 00m00s [122/179] Installing openldap-0:2.6.10- 100% | 324.0 MiB/s | 663.6 KiB | 00m00s [123/179] Installing gnupg2-dirmngr-0:2 100% | 37.9 MiB/s | 621.1 KiB | 00m00s [124/179] Installing gnupg2-0:2.4.8-4.f 100% | 262.1 MiB/s | 6.6 MiB | 00m00s [125/179] Installing rpm-sign-libs-0:6. 100% | 0.0 B/s | 40.6 KiB | 00m00s [126/179] Installing gpgverify-0:2.2-3. 100% | 0.0 B/s | 9.4 KiB | 00m00s [127/179] Installing jansson-0:2.14-3.f 100% | 88.3 MiB/s | 90.5 KiB | 00m00s [128/179] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [129/179] Installing pkgconf-0:2.3.0-3. 100% | 8.1 MiB/s | 91.0 KiB | 00m00s [130/179] Installing pkgconf-pkg-config 100% | 177.3 KiB/s | 1.8 KiB | 00m00s [131/179] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [132/179] Installing libbrotli-0:1.1.0- 100% | 272.0 MiB/s | 835.6 KiB | 00m00s [133/179] Installing libnghttp2-0:1.68. 100% | 159.5 MiB/s | 163.4 KiB | 00m00s [134/179] Installing keyutils-libs-0:1. 100% | 54.4 MiB/s | 55.7 KiB | 00m00s [135/179] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.2 KiB | 00m00s [136/179] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [137/179] Installing krb5-libs-0:1.21.3 100% | 383.3 MiB/s | 2.3 MiB | 00m00s [138/179] Installing libssh-0:0.11.3-1. 100% | 277.9 MiB/s | 569.2 KiB | 00m00s [139/179] Installing libcurl-0:8.17.0~r 100% | 300.9 MiB/s | 924.5 KiB | 00m00s [140/179] Installing curl-0:8.17.0~rc2- 100% | 25.9 MiB/s | 476.9 KiB | 00m00s [141/179] Installing rpm-0:6.0.0-1.fc44 100% | 95.4 MiB/s | 2.6 MiB | 00m00s [142/179] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [143/179] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [144/179] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [145/179] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 9.3 KiB | 00m00s [146/179] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [147/179] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [148/179] Installing elfutils-default-y 100% | 681.0 KiB/s | 2.0 KiB | 00m00s [149/179] Installing elfutils-libs-0:0. 100% | 336.6 MiB/s | 689.3 KiB | 00m00s [150/179] Installing elfutils-debuginfo 100% | 7.0 MiB/s | 86.3 KiB | 00m00s [151/179] Installing elfutils-0:0.194-1 100% | 172.4 MiB/s | 2.9 MiB | 00m00s [152/179] Installing binutils-0:2.45.50 100% | 393.1 MiB/s | 27.1 MiB | 00m00s [153/179] Installing gdb-minimal-0:16.3 100% | 331.4 MiB/s | 13.3 MiB | 00m00s [154/179] Installing debugedit-0:5.2-3. 100% | 19.3 MiB/s | 217.3 KiB | 00m00s [155/179] Installing rpm-build-libs-0:6 100% | 262.9 MiB/s | 269.2 KiB | 00m00s [156/179] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [157/179] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [158/179] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [159/179] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [160/179] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [161/179] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [162/179] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [163/179] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [164/179] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [165/179] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [166/179] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [167/179] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [168/179] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [169/179] Installing rpm-build-0:6.0.0- 100% | 24.1 MiB/s | 296.5 KiB | 00m00s [170/179] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [171/179] Installing redhat-rpm-config- 100% | 185.1 MiB/s | 189.5 KiB | 00m00s [172/179] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [173/179] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [174/179] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [175/179] Installing python-srpm-macros 100% | 12.9 MiB/s | 52.9 KiB | 00m00s [176/179] Installing rpm-plugin-selinux 100% | 0.0 B/s | 13.0 KiB | 00m00s [177/179] Installing which-0:2.23-3.fc4 100% | 7.0 MiB/s | 85.7 KiB | 00m00s [178/179] Installing shadow-utils-2:4.1 100% | 165.4 MiB/s | 4.0 MiB | 00m00s [179/179] Installing info-0:7.2-6.fc43. 100% | 59.3 KiB/s | 354.3 KiB | 00m06s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.7.2-2.fc44.x86_64 alternatives-1.33-3.fc44.x86_64 ansible-srpm-macros-1-18.1.fc43.noarch audit-libs-4.1.2-2.fc44.x86_64 bash-5.3.0-2.fc43.x86_64 binutils-2.45.50-5.fc44.x86_64 build-reproducibility-srpm-macros-0.7.2-2.fc44.noarch bzip2-1.0.8-21.fc43.x86_64 bzip2-libs-1.0.8-21.fc43.x86_64 ca-certificates-2025.2.80_v9.0.304-2.fc44.noarch coreutils-9.8-3.fc44.x86_64 coreutils-common-9.8-3.fc44.x86_64 cpio-2.15-6.fc43.x86_64 crypto-policies-20250714-5.gitcd6043a.fc44.noarch curl-8.17.0~rc2-1.fc44.x86_64 cyrus-sasl-lib-2.1.28-33.fc44.x86_64 debugedit-5.2-3.fc44.x86_64 diffutils-3.12-3.fc43.x86_64 dwz-0.16-2.fc43.x86_64 ed-1.22.2-1.fc44.x86_64 efi-srpm-macros-6-5.fc44.noarch elfutils-0.194-1.fc44.x86_64 elfutils-debuginfod-client-0.194-1.fc44.x86_64 elfutils-default-yama-scope-0.194-1.fc44.noarch elfutils-libelf-0.194-1.fc44.x86_64 elfutils-libs-0.194-1.fc44.x86_64 fedora-gpg-keys-44-0.1.noarch fedora-release-44-0.5.noarch fedora-release-common-44-0.5.noarch fedora-release-identity-basic-44-0.5.noarch fedora-repos-44-0.1.noarch fedora-repos-rawhide-44-0.1.noarch file-5.46-8.fc44.x86_64 file-libs-5.46-8.fc44.x86_64 filesystem-3.18-50.fc43.x86_64 filesystem-srpm-macros-3.18-50.fc43.noarch findutils-4.10.0-6.fc43.x86_64 fonts-srpm-macros-5.0.0-1.fc44.noarch forge-srpm-macros-0.4.0-3.fc43.noarch fpc-srpm-macros-1.3-15.fc43.noarch gap-srpm-macros-2-1.fc44.noarch gawk-5.3.2-2.fc43.x86_64 gdb-minimal-16.3-6.fc44.x86_64 gdbm-libs-1.23-10.fc43.x86_64 ghc-srpm-macros-1.9.2-3.fc43.noarch glibc-2.42.9000-7.fc44.x86_64 glibc-common-2.42.9000-7.fc44.x86_64 glibc-gconv-extra-2.42.9000-7.fc44.x86_64 glibc-minimal-langpack-2.42.9000-7.fc44.x86_64 gmp-6.3.0-4.fc44.x86_64 gnat-srpm-macros-6-8.fc43.noarch gnulib-l10n-20241231-1.fc44.noarch gnupg2-2.4.8-4.fc43.x86_64 gnupg2-dirmngr-2.4.8-4.fc43.x86_64 gnupg2-gpg-agent-2.4.8-4.fc43.x86_64 gnupg2-gpgconf-2.4.8-4.fc43.x86_64 gnupg2-keyboxd-2.4.8-4.fc43.x86_64 gnupg2-verify-2.4.8-4.fc43.x86_64 gnutls-3.8.10-5.fc44.x86_64 go-srpm-macros-3.8.0-1.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-c6e7f081cf80e13146676e88829b606631645531-66b6dccf gpgverify-2.2-3.fc43.noarch grep-3.12-2.fc43.x86_64 gzip-1.14-1.fc44.x86_64 ima-evm-utils-libs-1.6.2-7.fc44.x86_64 info-7.2-6.fc43.x86_64 jansson-2.14-3.fc43.x86_64 java-srpm-macros-1-7.fc43.noarch json-c-0.18-7.fc43.x86_64 kernel-srpm-macros-1.0-27.fc43.noarch keyutils-libs-1.6.3-6.fc43.x86_64 krb5-libs-1.21.3-10.fc44.x86_64 libacl-2.3.2-4.fc43.x86_64 libarchive-3.8.2-1.fc44.x86_64 libassuan-2.5.7-4.fc43.x86_64 libattr-2.5.2-6.fc43.x86_64 libblkid-2.41.2-7.fc44.x86_64 libbrotli-1.1.0-10.fc44.x86_64 libcap-2.77-1.fc44.x86_64 libcap-ng-0.8.5-8.fc44.x86_64 libcom_err-1.47.3-2.fc43.x86_64 libcurl-8.17.0~rc2-1.fc44.x86_64 libeconf-0.7.9-2.fc43.x86_64 libevent-2.1.12-16.fc43.x86_64 libfdisk-2.41.2-7.fc44.x86_64 libffi-3.5.2-1.fc44.x86_64 libfsverity-1.6-3.fc43.x86_64 libgcc-15.2.1-3.fc44.x86_64 libgcrypt-1.11.1-2.fc43.x86_64 libgomp-15.2.1-3.fc44.x86_64 libgpg-error-1.56-1.fc44.x86_64 libidn2-2.3.8-2.fc43.x86_64 libksba-1.6.7-4.fc43.x86_64 liblastlog2-2.41.2-7.fc44.x86_64 libmount-2.41.2-7.fc44.x86_64 libnghttp2-1.68.0-1.fc44.x86_64 libpkgconf-2.3.0-3.fc43.x86_64 libpsl-0.21.5-6.fc43.x86_64 libselinux-3.9-5.fc44.x86_64 libselinux-utils-3.9-5.fc44.x86_64 libsemanage-3.9-4.fc44.x86_64 libsepol-3.9-2.fc43.x86_64 libsmartcols-2.41.2-7.fc44.x86_64 libssh-0.11.3-1.fc44.x86_64 libssh-config-0.11.3-1.fc44.noarch libstdc++-15.2.1-3.fc44.x86_64 libtasn1-4.20.0-2.fc43.x86_64 libtool-ltdl-2.5.4-7.fc43.x86_64 libunistring-1.1-10.fc43.x86_64 libusb1-1.0.29-4.fc44.x86_64 libuuid-2.41.2-7.fc44.x86_64 libverto-0.3.2-11.fc43.x86_64 libxcrypt-4.4.38-9.fc44.x86_64 libxml2-2.12.10-5.fc44.x86_64 libzstd-1.5.7-3.fc44.x86_64 linkdupes-0.7.2-2.fc44.x86_64 lua-libs-5.4.8-2.fc43.x86_64 lua-srpm-macros-1-16.fc43.noarch lz4-libs-1.10.0-3.fc43.x86_64 mpfr-4.2.2-2.fc43.x86_64 ncurses-base-6.5-7.20250614.fc43.noarch ncurses-libs-6.5-7.20250614.fc43.x86_64 nettle-3.10.1-2.fc43.x86_64 npth-1.8-3.fc43.x86_64 ocaml-srpm-macros-11-2.fc43.noarch openblas-srpm-macros-2-20.fc43.noarch openldap-2.6.10-4.fc44.x86_64 openssl-libs-3.5.4-1.fc44.x86_64 p11-kit-0.25.8-1.fc44.x86_64 p11-kit-trust-0.25.8-1.fc44.x86_64 package-notes-srpm-macros-0.5-14.fc43.noarch pam-libs-1.7.1-3.fc43.x86_64 patch-2.8-2.fc43.x86_64 pcre2-10.46-1.fc44.x86_64 pcre2-syntax-10.46-1.fc44.noarch perl-srpm-macros-1-60.fc43.noarch pkgconf-2.3.0-3.fc43.x86_64 pkgconf-m4-2.3.0-3.fc43.noarch pkgconf-pkg-config-2.3.0-3.fc43.x86_64 policycoreutils-3.9-5.fc44.x86_64 popt-1.19-9.fc43.x86_64 publicsuffix-list-dafsa-20250616-2.fc43.noarch pyproject-srpm-macros-1.18.5-1.fc44.noarch python-srpm-macros-3.14-9.fc44.noarch qt5-srpm-macros-5.15.17-2.fc43.noarch qt6-srpm-macros-6.10.0-1.fc44.noarch readline-8.3-2.fc43.x86_64 redhat-rpm-config-343-14.fc44.noarch rpm-6.0.0-1.fc44.x86_64 rpm-build-6.0.0-1.fc44.x86_64 rpm-build-libs-6.0.0-1.fc44.x86_64 rpm-libs-6.0.0-1.fc44.x86_64 rpm-plugin-selinux-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 rpm-sign-libs-6.0.0-1.fc44.x86_64 rust-srpm-macros-26.4-1.fc44.noarch sed-4.9-6.fc44.x86_64 selinux-policy-42.14-1.fc44.noarch selinux-policy-targeted-42.14-1.fc44.noarch setup-2.15.0-27.fc44.noarch shadow-utils-4.18.0-3.fc43.x86_64 sqlite-libs-3.50.4-1.fc44.x86_64 systemd-libs-258.1-2.fc44.x86_64 systemd-standalone-sysusers-258.1-2.fc44.x86_64 tar-1.35-6.fc43.x86_64 tpm2-tss-4.1.3-8.fc43.x86_64 tree-sitter-srpm-macros-0.4.2-1.fc43.noarch unzip-6.0-68.fc44.x86_64 util-linux-2.41.2-7.fc44.x86_64 util-linux-core-2.41.2-7.fc44.x86_64 which-2.23-3.fc43.x86_64 xxhash-libs-0.8.3-3.fc43.x86_64 xz-5.8.1-2.fc43.x86_64 xz-libs-5.8.1-2.fc43.x86_64 zig-srpm-macros-1-5.fc43.noarch zip-3.0-44.fc43.x86_64 zlib-ng-compat-2.2.5-2.fc44.x86_64 zstd-1.5.7-3.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1754352000 Wrote: /builddir/build/SRPMS/seaview-5.1-2.fc44.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1762037905.076607/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-5lx6yxri/seaview/seaview.spec) Config(child) 0 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/seaview-5.1-2.fc44.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1762037905.076607/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1762037905.076607/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1762037905.076607/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.0-1.fc44.x86_64 rpm-sequoia-1.9.0-2.fc43.x86_64 dnf5-5.2.17.0-2.fc44.x86_64 dnf5-plugins-5.2.17.0-2.fc44.x86_64 Finish: chroot init Start: build phase for seaview-5.1-2.fc44.src.rpm Start: build setup for seaview-5.1-2.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1754352000 Wrote: /builddir/build/SRPMS/seaview-5.1-2.fc44.src.rpm Updating and loading repositories: Copr repository 100% | 152.2 KiB/s | 1.5 KiB | 00m00s fedora 100% | 93.1 KiB/s | 26.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils x86_64 0.28-2.fc43 fedora 218.4 KiB fltk-devel x86_64 1.4.4-1.fc44 copr_base 50.8 MiB gcc-c++ x86_64 15.2.1-3.fc44 fedora 41.4 MiB libXinerama-devel x86_64 1.1.5-9.fc43 fedora 7.0 KiB make x86_64 1:4.4.1-11.fc43 fedora 1.8 MiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-15.fc43 fedora 192.7 KiB annobin-docs noarch 13.01-1.fc44 fedora 98.9 KiB annobin-plugin-gcc x86_64 13.01-1.fc44 fedora 1.0 MiB brotli x86_64 1.1.0-10.fc44 fedora 31.6 KiB brotli-devel x86_64 1.1.0-10.fc44 fedora 65.6 KiB bzip2-devel x86_64 1.0.8-21.fc43 fedora 309.8 KiB cairo x86_64 1.18.4-2.fc43 fedora 1.8 MiB cairo-devel x86_64 1.18.4-2.fc43 fedora 2.3 MiB cmake-filesystem x86_64 3.31.6-4.fc43 fedora 0.0 B cpp x86_64 15.2.1-3.fc44 fedora 37.9 MiB default-fonts-core-sans noarch 4.2-5.fc43 fedora 11.9 KiB emacs-filesystem noarch 1:30.0-5.fc43 fedora 0.0 B expat x86_64 2.7.2-1.fc44 fedora 298.6 KiB fltk x86_64 1.4.4-1.fc44 copr_base 2.0 MiB fontconfig x86_64 2.17.0-3.fc43 fedora 765.9 KiB fontconfig-devel x86_64 2.17.0-3.fc43 fedora 123.6 KiB fonts-filesystem noarch 1:5.0.0-1.fc44 fedora 0.0 B freetype x86_64 2.14.1-1.fc44 fedora 866.3 KiB freetype-devel x86_64 2.14.1-1.fc44 fedora 8.6 MiB gcc x86_64 15.2.1-3.fc44 fedora 111.9 MiB gcc-plugin-annobin x86_64 15.2.1-3.fc44 fedora 57.1 KiB gettext x86_64 0.26-1.fc44 fedora 12.7 MiB gettext-envsubst x86_64 0.26-1.fc44 fedora 74.7 KiB gettext-libs x86_64 0.26-1.fc44 fedora 2.2 MiB gettext-runtime x86_64 0.26-1.fc44 fedora 708.1 KiB glib2 x86_64 2.86.1-1.fc44 fedora 14.8 MiB glib2-devel x86_64 2.86.1-1.fc44 fedora 15.7 MiB glibc-devel x86_64 2.42.9000-7.fc44 fedora 2.3 MiB google-noto-fonts-common noarch 20251001-1.fc44 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20251001-1.fc44 fedora 1.4 MiB graphite2 x86_64 1.3.14-19.fc43 fedora 191.8 KiB graphite2-devel x86_64 1.3.14-19.fc43 fedora 49.3 KiB harfbuzz x86_64 12.1.0-1.fc44 fedora 2.9 MiB harfbuzz-cairo x86_64 12.1.0-1.fc44 fedora 48.1 KiB harfbuzz-devel x86_64 12.1.0-1.fc44 fedora 5.3 MiB harfbuzz-icu x86_64 12.1.0-1.fc44 fedora 15.4 KiB hwdata noarch 0.400-1.fc44 fedora 9.6 MiB kernel-headers x86_64 6.18.0-0.rc3.30.fc44 fedora 6.8 MiB libICE x86_64 1.1.2-3.fc43 fedora 194.4 KiB libICE-devel x86_64 1.1.2-3.fc43 fedora 261.8 KiB libSM x86_64 1.2.5-3.fc43 fedora 101.0 KiB libSM-devel x86_64 1.2.5-3.fc43 fedora 18.8 KiB libX11 x86_64 1.8.12-1.fc43 fedora 1.3 MiB libX11-common noarch 1.8.12-1.fc43 fedora 1.2 MiB libX11-devel x86_64 1.8.12-1.fc43 fedora 1.0 MiB libX11-xcb x86_64 1.8.12-1.fc43 fedora 10.9 KiB libXau x86_64 1.0.12-3.fc43 fedora 72.9 KiB libXau-devel x86_64 1.0.12-3.fc43 fedora 7.5 KiB libXcursor x86_64 1.2.3-3.fc43 fedora 53.4 KiB libXext x86_64 1.3.6-4.fc43 fedora 90.0 KiB libXext-devel x86_64 1.3.6-4.fc43 fedora 98.9 KiB libXfixes x86_64 6.0.1-6.fc43 fedora 26.2 KiB libXft x86_64 2.3.8-9.fc43 fedora 164.4 KiB libXft-devel x86_64 2.3.8-9.fc43 fedora 31.7 KiB libXinerama x86_64 1.1.5-9.fc43 fedora 15.0 KiB libXrender x86_64 0.9.12-3.fc43 fedora 46.0 KiB libXrender-devel x86_64 0.9.12-3.fc43 fedora 50.1 KiB libXt x86_64 1.3.1-3.fc43 fedora 429.8 KiB libXt-devel x86_64 1.3.1-3.fc43 fedora 1.6 MiB libXxf86vm x86_64 1.1.6-3.fc43 fedora 25.3 KiB libblkid-devel x86_64 2.41.2-7.fc44 fedora 44.9 KiB libdrm x86_64 2.4.127-3.fc44 fedora 399.9 KiB libedit x86_64 3.1-57.20251016cvs.fc44 fedora 240.2 KiB libffi-devel x86_64 3.5.2-1.fc44 fedora 33.9 KiB libglvnd x86_64 1:1.7.0-8.fc43 fedora 526.1 KiB libglvnd-core-devel x86_64 1:1.7.0-8.fc43 fedora 40.3 KiB libglvnd-devel x86_64 1:1.7.0-8.fc43 fedora 2.1 MiB libglvnd-egl x86_64 1:1.7.0-8.fc43 fedora 64.7 KiB libglvnd-gles x86_64 1:1.7.0-8.fc43 fedora 97.9 KiB libglvnd-glx x86_64 1:1.7.0-8.fc43 fedora 601.2 KiB libglvnd-opengl x86_64 1:1.7.0-8.fc43 fedora 144.8 KiB libicu x86_64 77.1-1.fc43 fedora 36.4 MiB libicu-devel x86_64 77.1-1.fc43 fedora 5.0 MiB libjpeg-turbo x86_64 3.1.2-1.fc44 fedora 804.8 KiB libjpeg-turbo-devel x86_64 3.1.2-1.fc44 fedora 353.9 KiB libmount-devel x86_64 2.41.2-7.fc44 fedora 65.5 KiB libmpc x86_64 1.3.1-8.fc43 fedora 160.6 KiB libpciaccess x86_64 0.16-16.fc43 fedora 44.5 KiB libpng x86_64 2:1.6.50-2.fc43 fedora 237.7 KiB libpng-devel x86_64 2:1.6.50-2.fc43 fedora 885.6 KiB libselinux-devel x86_64 3.9-5.fc44 fedora 127.3 KiB libsepol-devel x86_64 3.9-2.fc43 fedora 121.4 KiB libstdc++-devel x86_64 15.2.1-3.fc44 fedora 37.2 MiB libtextstyle x86_64 0.26-1.fc44 fedora 199.5 KiB libuuid-devel x86_64 2.41.2-7.fc44 fedora 41.0 KiB libwayland-client x86_64 1.24.0-2.fc44 fedora 62.0 KiB libxcb x86_64 1.17.0-6.fc43 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-6.fc43 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.38-9.fc44 fedora 30.8 KiB libxml2-devel x86_64 2.12.10-5.fc44 fedora 3.4 MiB libxshmfence x86_64 1.3.2-7.fc43 fedora 12.4 KiB llvm-filesystem x86_64 21.1.4-1.fc44 fedora 0.0 B llvm-libs x86_64 21.1.4-1.fc44 fedora 138.6 MiB lm_sensors-libs x86_64 3.6.0-23.fc43 fedora 85.8 KiB lzo x86_64 2.10-15.fc43 fedora 178.9 KiB lzo-devel x86_64 2.10-15.fc43 fedora 212.2 KiB lzo-minilzo x86_64 2.10-15.fc43 fedora 36.7 KiB mesa-dri-drivers x86_64 25.2.5-1.fc44 fedora 47.8 MiB mesa-filesystem x86_64 25.2.5-1.fc44 fedora 3.6 KiB mesa-libEGL x86_64 25.2.5-1.fc44 fedora 306.4 KiB mesa-libGL x86_64 25.2.5-1.fc44 fedora 286.0 KiB mesa-libGLU x86_64 9.0.3-7.fc43 fedora 361.8 KiB mesa-libGLU-devel x86_64 9.0.3-7.fc43 fedora 17.0 KiB mesa-libgbm x86_64 25.2.5-1.fc44 fedora 19.7 KiB mpdecimal x86_64 4.0.1-2.fc43 fedora 217.2 KiB pcre2-devel x86_64 10.46-1.fc44 fedora 2.1 MiB pcre2-utf16 x86_64 10.46-1.fc44 fedora 626.3 KiB pcre2-utf32 x86_64 10.46-1.fc44 fedora 602.2 KiB pixman x86_64 0.46.2-2.fc43 fedora 710.3 KiB pixman-devel x86_64 0.46.2-2.fc43 fedora 56.1 KiB python-pip-wheel noarch 25.2-4.fc44 fedora 1.2 MiB python3 x86_64 3.14.0-2.fc44 fedora 28.9 KiB python3-libs x86_64 3.14.0-2.fc44 fedora 43.0 MiB python3-packaging noarch 25.0-7.fc44 fedora 607.4 KiB spirv-tools-libs x86_64 2025.3-7.fc44 fedora 5.6 MiB sysprof-capture-devel x86_64 49.0-1.fc44 fedora 803.7 KiB tzdata noarch 2025b-3.fc43 fedora 1.6 MiB xml-common noarch 0.6.3-67.fc43 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-5.fc43 fedora 1.7 MiB xz-devel x86_64 1:5.8.1-2.fc43 fedora 258.8 KiB zlib-ng-compat-devel x86_64 2.2.5-2.fc44 fedora 107.0 KiB Transaction Summary: Installing: 126 packages Total size of inbound packages is 179 MiB. Need to download 13 KiB. After this operation, 684 MiB extra will be used (install 684 MiB, remove 0 B). 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Finish: build setup for seaview-5.1-2.fc44.src.rpm Start: rpmbuild seaview-5.1-2.fc44.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1754352000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.vJHeWu Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3mavEd + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + cd /builddir/build/BUILD/seaview-5.1-build + rm -rf seaview + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seaview_5.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seaview + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (seaview-chris.patch):' Patch #0 (seaview-chris.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0 patching file Makefile + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.GvWKvJ + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + make -j4 c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" seaview.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" custom.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" use_mase_files.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" regions.cxx regions.cxx: In function ‘void save_active_region(SEA_VIEW*)’: regions.cxx:503:10: warning: variable ‘taille’ set but not used [-Wunused-but-set-variable] 503 | int tmp, taille; | ^~~~~~ use_mase_files.cxx: In function ‘int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:215:9: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~~ use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 215 | while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0; | ^~~~ regions.cxx: In function ‘int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:314:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 314 | system(cmd); | ~~~~~~^~~~~ use_mase_files.cxx: In function ‘int read_clustal_align(const char*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:623:17: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation] 623 | while(*p==' ') p--; *(p+1)=0; | ^~~~~ use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’ 623 | while(*p==' ') p--; *(p+1)=0; | ^ seaview.cxx: In function ‘int delete_selected_seqs(SEA_VIEW*)’: seaview.cxx:1759:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1759 | for(i = 0, j = 0; i< view->tot_seqs; i++) | ^~~ seaview.cxx:1762:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1762 | memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) ); | ^~~~~~ seaview.cxx: In function ‘void colors_callback(Fl_Widget*, void*)’: seaview.cxx:1913:15: warning: variable ‘item’ set but not used [-Wunused-but-set-variable] 1913 | Fl_Menu_Item *item; | ^~~~ seaview.cxx: In function ‘void delete_tmp_filename(const char*)’: seaview.cxx:638:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 638 | system(fname); | ~~~~~~^~~~~~~ seaview.cxx: In function ‘char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)’: seaview.cxx:2908:45: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2908 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ regions.cxx:291:40: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size 496 [-Wformat-truncation=] 291 | snprintf(cmd, sizeof(cmd), "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); | ^~ ~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from regions.cxx:1: In function ‘snprintf’, inlined from ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’ at regions.cxx:291:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output 16 or more bytes (assuming 4111) into a destination of size 500 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ regions.cxx: In function ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’: regions.cxx:344:42: warning: ‘last’ may be used uninitialized [-Wmaybe-uninitialized] 344 | memmove(cmd, last, l + 1 - (last - cmd)); | ~~~~~^~~~~ regions.cxx:246:56: note: ‘last’ was declared here 246 | char base_fname[PATH_MAX], fname[PATH_MAX], *p, *q, *last; | ^~~~ regions.cxx: In function ‘site_mask_creation_dialog(_SEA_VIEW*, position_mask*)’: regions.cxx:746:10: warning: ‘retval’ may be used uninitialized [-Wmaybe-uninitialized] 746 | return retval; | ^~~~~~ regions.cxx:688:15: note: ‘retval’ was declared here 688 | const char *retval; | ^~~~~~ seaview.cxx: In function ‘help_callback(Fl_Widget*, void*)’: seaview.cxx:3627:53: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 3627 | "Help file %s\nnot found in PATH directories nor in current directory", help_file | ^~ seaview.cxx: In function ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’: seaview.cxx:1130:28: warning: ‘%7d’ directive output may be truncated writing between 7 and 11 bytes into a region of size 10 [-Wformat-truncation=] 1130 | snprintf(site_line, 10, "%7d", view->first_site + view->tot_sites - 1); | ^~~ seaview.cxx:1130:27: note: directive argument in the range [-2147483648, 2147483646] 1130 | snprintf(site_line, 10, "%7d", view->first_site + view->tot_sites - 1); | ^~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from seaview.cxx:67: In function ‘snprintf’, inlined from ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’ at seaview.cxx:1130:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 8 and 12 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" load_seq.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" align.cxx use_mase_files.cxx: In function ‘read_mase_seqs_header(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:167:32: warning: ‘lpre’ may be used uninitialized [-Wmaybe-uninitialized] 167 | if(lpre+lseq > curr_max_header) { | ~~~~^~~~~ use_mase_files.cxx:137:18: note: ‘lpre’ was declared here 137 | int l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header; | ^~~~ align.cxx: In function ‘void replace_stars(char*)’: align.cxx:1310:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1310 | fread(all, 1, l, in); | ~~~~~^~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘read_phylip_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:521:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized] 521 | l = q - seq[totseqs - 1]; | ~~^~~~~~~~~~~~~~~~~~ use_mase_files.cxx:466:11: note: ‘q’ was declared here 466 | char *p, *q; | ^ use_mase_files.cxx: In function ‘read_clustal_align(char const*, char***, char***, char***, char**, char**)’: use_mase_files.cxx:617:61: warning: ‘wid_name’ may be used uninitialized [-Wmaybe-uninitialized] 617 | seqname[curr_spec] = (char *)malloc(wid_name+1); | ~~~~~~~~^~ use_mase_files.cxx:564:16: note: ‘wid_name’ was declared here 564 | carac, wid_name; | ^~~~~~~~ use_mase_files.cxx:637:17: warning: ‘curr_max_len’ may be used uninitialized [-Wmaybe-uninitialized] 637 | if(curr_len + l > curr_max_len) { | ^~ use_mase_files.cxx:563:64: note: ‘curr_max_len’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^~~~~~~~~~~~ use_mase_files.cxx:650:15: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized] 650 | memcpy(seq[curr_spec]+curr_len, line + wid_name, l); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:563:8: note: ‘l’ was declared here 563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len, | ^ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:952:48: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 952 | snprintf(resname, sizeof(resname), "msa_name_%d", view->alignment_algorithm + 1); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from align.cxx:1: In function ‘snprintf’, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:952:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:954:21: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:954:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:976:22: align.cxx:999:23: note: directive argument in the range [1, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:976:22: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 24 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’: align.cxx:981:21: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 5 [-Wformat-truncation=] 981 | snprintf(tmp, 5, "%d", reponse); | ^~ align.cxx:981:20: note: directive argument in the range [0, 2147483646] 981 | snprintf(tmp, 5, "%d", reponse); | ^~~~ In function ‘snprintf’, inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:981:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 5 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘goto_callback(Fl_Widget*, void*)’: seaview.cxx:2737:16: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2737 | strncpy(target, p, l); target[l] = 0; majuscules(target); | ^ seaview.cxx:2735:19: note: length computed here 2735 | l = strlen(p); | ~~~~~~^~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" xfmatpt.cxx align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:829:50: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 829 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", view->alignment_algorithm + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:829:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:839:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 839 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", num + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:839:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:841:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 841 | snprintf(msa_name, sizeof(msa_name), "msa_name_%d", num); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:841:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:844:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 844 | snprintf(msa_name, sizeof(msa_name), "msa_args_%d", num + 1); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:844:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:846:58: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 846 | snprintf(msa_name, sizeof(msa_name), "msa_args_%d", num); | ^ In function ‘snprintf’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:846:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 11 and 21 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:24: align.cxx:999:23: note: directive argument in the range [-2147483646, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:24: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:857:39: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483646] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:857:39: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:26: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483646] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:26: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:865:23: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:865:23: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:877:21: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:877:21: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1833:35: warning: ‘lines_per_page’ may be used uninitialized [-Wmaybe-uninitialized] 1833 | if( use_pdf && (!firstpage) && (curr_lines + view->tot_seqs + nl > lines_per_page)) { | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:32: note: ‘lines_per_page’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~~~~~ use_mase_files.cxx:1769:14: warning: ‘top_margin’ may be used uninitialized [-Wmaybe-uninitialized] 1769 | fl_draw(oneline, margin, top_margin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx:1678:66: note: ‘top_margin’ was declared here 1678 | res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin; | ^~~~~~~~~~ In function ‘color_pdf_display(_SEA_VIEW*, int (*)(int), char*, int, double, double, int, double, double, int, int)’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1920:34: use_mase_files.cxx:1984:33: warning: ‘descender’ may be used uninitialized [-Wmaybe-uninitialized] 1984 | fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize); | ~~~~~~~~~~~~~^~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1689:42: note: ‘descender’ was declared here 1689 | double char_width = fontsize/2, descender, margin = 25; | ^~~~~~~~~ In file included from pdf_or_ps.h:4, from use_mase_files.cxx:2: In member function ‘Fl_Paged_Device::start_page()’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1766:52: /usr/include/FL/Fl_Paged_Device.H:112:38: warning: ‘surface’ may be used uninitialized [-Wmaybe-uninitialized] 112 | int start_page() {return begin_page();} | ~~~~~~~~~~^~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1679:22: note: ‘surface’ was declared here 1679 | Fl_Surface_Device *surface; | ^~~~~~~ In file included from /usr/include/string.h:555, from seaview.h:5, from use_mase_files.cxx:1: In function ‘memset’, inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1822:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘vary_pos’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’: use_mase_files.cxx:1686:8: note: ‘vary_pos’ was declared here 1686 | int *vary_pos; /* rang ds alignement de la colonne imprimée */ | ^~~~~~~~ In file included from /usr/include/string.h:555, from seaview.h:5: In function ‘memset’, inlined from ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’ at seaview.cxx:3685:8: /usr/include/bits/string_fortified.h:59:33: warning: ‘gapcolor’ may be used uninitialized [-Wmaybe-uninitialized] 59 | return __builtin___memset_chk (__dest, __ch, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 60 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’: seaview.cxx:3665:8: note: ‘gapcolor’ was declared here 3665 | int l, gapcolor, *plength; | ^~~~~~~~ align.cxx: In function ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:615:24: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:615:24: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘cre_align_menu(_SEA_VIEW*)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:752:23: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32, inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:752:23: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘del_gap_only_sites(_SEA_VIEW*)’: seaview.cxx:1696:23: warning: ‘debut’ may be used uninitialized [-Wmaybe-uninitialized] 1696 | count = position - debut; | ~~~~~~^~~~~~~~~~~~~~~~~~ seaview.cxx:1675:39: note: ‘debut’ was declared here 1675 | int position, numseq, allgaps, inrun, debut, count; | ^~~~~ align.cxx: In function ‘get_algo_opts(int, char**)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ In function ‘get_opt_resname(int)’, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32: align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9, inlined from ‘get_algo_opts(int, char**)’ at align.cxx:990:32: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘get_opt_resname(int)’: align.cxx:999:37: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~ align.cxx:999:23: note: directive argument in the range [-2147483647, 2147483647] 999 | snprintf(resname, 20, "msa_opt_args_%d", algonum + 1); | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘get_opt_resname(int)’ at align.cxx:999:9: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ align.cxx: In function ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’: align.cxx:1353:47: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 8 [-Wformat-truncation=] 1353 | snprintf(seqname[num], 10, "S_%d", num); | ^~ align.cxx:1353:44: note: directive argument in the range [0, 2147483646] 1353 | snprintf(seqname[num], 10, "S_%d", num); | ^~~~~~ In function ‘snprintf’, inlined from ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’ at align.cxx:1353:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 4 and 13 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘delete_selected_seqs(_SEA_VIEW*)’: seaview.cxx:1730:48: warning: ‘temp_data’ may be used uninitialized [-Wmaybe-uninitialized] 1730 | if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) view->sequence[i]; | ^ seaview.cxx:1718:8: note: ‘temp_data’ was declared here 1718 | void **temp_data; | ^~~~~~~~~ seaview.cxx:1755:47: warning: ‘temp_int’ may be used uninitialized [-Wmaybe-uninitialized] 1755 | if( ! view->sel_seqs[i] ) temp_int[j++]= view->each_length[i]; | ^ seaview.cxx:1720:26: note: ‘temp_int’ was declared here 1720 | int new_tot_seqs, i, j, *temp_int, numset; | ^~~~~~~~ align.cxx: In function ‘unalign(_SEA_VIEW*)’: align.cxx:1423:91: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1423 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1395:15: note: ‘calc_color_function’ was declared here 1395 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ align.cxx: In function ‘replace_align_part(_SEA_VIEW*, int, int, char*, int, int, int*, align_choice, char const**)’: align.cxx:456:83: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 456 | view->col_rank[num][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:300:7: note: ‘calc_color_function’ was declared here 300 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ use_mase_files.cxx: In function ‘format_conversion(int, char**)’: use_mase_files.cxx:2373:3: warning: ‘err_message’ may be used uninitialized [-Wmaybe-uninitialized] 2373 | if (err_message) { | ^~ use_mase_files.cxx:2175:9: note: ‘err_message’ was declared here 2175 | char *err_message, *p; | ^~~~~~~~~~~ use_mase_files.cxx:2274:27: warning: ‘current_seg’ may be used uninitialized [-Wmaybe-uninitialized] 2274 | current_seg->next = seg; | ~~~~~~~~~~~~~~~~~~^~~~~ use_mase_files.cxx:2239:20: note: ‘current_seg’ was declared here 2239 | list_segments *current_seg; | ^~~~~~~~~~~ seaview.cxx: In function ‘edit_menu_callback(Fl_Widget*, void*)’: seaview.cxx:2572:17: warning: ‘new_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2572 | new_pos += 2; | ~~~~~~~~^~~~ seaview.cxx:2556:30: note: ‘new_pos’ was declared here 2556 | int old_total, *tmp, new_pos, i, old_first_seq; | ^~~~~~~ xfmatpt.cxx: In function ‘change_comput_params(Fl_Widget*, void*)’: xfmatpt.cxx:750:29: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 750 | snprintf(tmp, 10,"%d", fdui->identites); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from matpt.h:3, from xfmatpt.cxx:1: In function ‘snprintf’, inlined from ‘change_comput_params(Fl_Widget*, void*)’ at xfmatpt.cxx:750:10: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 2 and 11 bytes into a destination of size 10 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" comlines.cxx align.cxx: In function ‘profile_align(_SEA_VIEW*)’: align.cxx:1289:90: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized] 1289 | view->col_rank[table[num]][i] = (char)calc_color_function( res ); | ~~~~~~~~~~~~~~~~~~~^~~~~~~ align.cxx:1116:15: note: ‘calc_color_function’ was declared here 1116 | int (*calc_color_function)(int); | ^~~~~~~~~~~~~~~~~~~ align.cxx: In function ‘command_line_align(int, char**)’: align.cxx:1515:56: warning: ‘%d’ directive output may be truncated writing between 1 and 11 bytes into a region of size 7 [-Wformat-truncation=] 1515 | snprintf(opt_name, sizeof(opt_name), "msa_opt_args_%d", | ^~ align.cxx:1515:42: note: directive argument in the range [-2147483647, 2147483647] 1515 | snprintf(opt_name, sizeof(opt_name), "msa_opt_args_%d", | ^~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘command_line_align(int, char**)’ at align.cxx:1515:13: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 15 and 25 bytes into a destination of size 20 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ seaview.cxx: In function ‘handle_keyboard(_SEA_VIEW*, unsigned int, int)’: seaview.cxx:4608:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4608 | if(count_each == multipl && | ^~ seaview.cxx:4572:20: note: ‘count_each’ was declared here 4572 | int count, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4735:17: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4735 | if(count_each == multipl && | ^~ seaview.cxx:4670:39: note: ‘count_each’ was declared here 4670 | int newlength = 0, count = 0, count_each, debut, fin, test; | ^~~~~~~~~~ seaview.cxx:4659:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized] 4659 | if(count_each == multipl && view->regions != NULL) | ^~ seaview.cxx:4636:13: note: ‘count_each’ was declared here 4636 | int count_each; | ^~~~~~~~~~ seaview.cxx:4618:17: warning: ‘count’ may be used uninitialized [-Wmaybe-uninitialized] 4618 | new_pos = view->cursor_site - count; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ seaview.cxx:4572:13: note: ‘count’ was declared here 4572 | int count, count_each, debut, fin, test; | ^~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" resource.cxx xfmatpt.cxx: In function ‘really_close(FD_matpt*)’: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function ‘show_dot_plot(char*, char*, char*, char*, int, int, int, void*)’: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘matpt.8_11->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ~~~~^~~~~~~~~~~~~~~ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘matpt.8_11->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" nexus.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" viewasprots.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" racnuc_fetch.cxx nexus.cxx: In function ‘next_token(_IO_FILE*)’: nexus.cxx:155:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 155 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:153:44: note: call to ‘realloc’ here 153 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx:173:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free] 173 | p = q + (p - big_token); | ~~^~~~~~~~~~~ nexus.cxx:171:44: note: call to ‘realloc’ here 171 | q = (char *)realloc(big_token, l_token); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~ nexus.cxx: In function ‘process_taxa_taxlabels(_IO_FILE*, int)’: nexus.cxx:357:1: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized] 357 | if(p != NULL && *p != ';') skip_command(in); | ^~ nexus.cxx:343:7: note: ‘p’ was declared here 343 | char *p, **names; | ^ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" concatenate.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" statistics.cxx nexus.cxx: In function ‘build_list_pairs(_IO_FILE*, int)’: nexus.cxx:441:27: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized] 441 | next->fin = debut; | ~~~~~~~~~~^~~~~~~ nexus.cxx:424:30: note: ‘next’ was declared here 424 | list_segments *list = NULL, *next, *elt; | ^~~~ nexus.cxx: In function ‘process_block_characters(_IO_FILE*, int*, char***, int*, int*)’: nexus.cxx:685:52: warning: ‘gap’ may be used uninitialized [-Wmaybe-uninitialized] 685 | seqs = process_chars_matrix(in, *nsites, gap, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ 686 | *pntaxa, *taxnames, FALSE, matchchar, missing, *protein); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ nexus.cxx:667:19: note: ‘gap’ was declared here 667 | int interleave=0, gap, matchchar = 0, missing = 0; | ^~~ concatenate.cxx: In function ‘concatenate(_SEA_VIEW*, _SEA_VIEW*, bool, bool, bool)’: concatenate.cxx:123:32: warning: ‘found’ may be used uninitialized [-Wmaybe-uninitialized] 123 | if (want_addgaps) found[j] = TRUE; | ^ concatenate.cxx:99:17: note: ‘found’ was declared here 99 | int i, j, l, *found, target_length = target->seq_length; | ^~~~~ concatenate.cxx:113:25: warning: ‘gaps’ may be used uninitialized [-Wmaybe-uninitialized] 113 | add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ concatenate.cxx:100:9: note: ‘gaps’ was declared here 100 | char *gaps; | ^~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" trees.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treedraw.cxx statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:366:43: warning: ‘compgroup’ may be used uninitialized [-Wmaybe-uninitialized] 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~ statistics.cxx:597:15: warning: ‘compgroupall’ may be used uninitialized [-Wmaybe-uninitialized] 597 | snprintf(p, ltext, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ statistics.cxx:366:55: note: ‘compgroupall’ was declared here 366 | double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4]; | ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, from statistics.cxx:1: In function ‘snprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:653:15: /usr/include/bits/stdio2.h:68:35: warning: ‘titvmin’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:77: note: ‘titvmin’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ In function ‘snprintf’, inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:655:15: /usr/include/bits/stdio2.h:68:35: warning: ‘titvmax’ may be used uninitialized [-Wmaybe-uninitialized] 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’: statistics.cxx:367:86: note: ‘titvmax’ was declared here 367 | double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv; | ^~~~~~~ trees.cxx: In function ‘matrix* Obs_Dist(allseq*, model*)’: trees.cxx:1599:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1599 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘matrix* K80_dist_nogamma(allseq*)’: trees.cxx:1741:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable] 1741 | phydbl unc_len; | ^~~~~~~ trees.cxx: In function ‘void run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1309:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1309 | fread(bootstrap_trees, l, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘void command_line_phylogeny(int, char**)’: trees.cxx:2823:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2823 | fread(utree, s, 1, in); | ~~~~~^~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" addbootstrap.cxx trees.cxx: In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’: trees.cxx:2434:25: warning: pointer ‘bootstrap_trees_73’ used after ‘realloc’ [-Wuse-after-free] 2434 | q = tmpc + (q - bootstrap_trees); | ~~^~~~~~~~~~~~~~~~~ trees.cxx:2433:38: note: call to ‘realloc’ here 2433 | char *tmpc = (char*)realloc(bootstrap_trees, lbtrees + 1); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’: trees.cxx:1290:30: warning: pointer ‘b_tree_366’ used after ‘realloc’ [-Wuse-after-free] 1290 | q = tree2 + (q - b_tree); | ~~^~~~~~~~ trees.cxx:1289:38: note: call to ‘realloc’ here 1289 | tree2 = (char *)realloc(b_tree, l + 1); | ~~~~~~~^~~~~~~~~~~~~~~ treedraw.cxx: In function ‘plotonly(int, char**)’: treedraw.cxx:3497:18: warning: pointer ‘tree_171’ used after ‘realloc’ [-Wuse-after-free] 3497 | p = q + (p - tree); | ~~^~~~~~ treedraw.cxx:3496:25: note: call to ‘realloc’ here 3496 | q = (char*)realloc(tree, l + 1); | ~~~~~~~^~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" least_squares_brl.cxx least_squares_brl.cxx: In function ‘tree_btos(int**, int, double*, double*, double*, char**, noeud2**)’: least_squares_brl.cxx:373:41: warning: ‘tax1’ may be used uninitialized [-Wmaybe-uninitialized] 373 | p1 = bottomnode(arbre_s[tax1]); | ^~~~ least_squares_brl.cxx:310:48: note: ‘tax1’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:374:41: warning: ‘tax2’ may be used uninitialized [-Wmaybe-uninitialized] 374 | p2 = bottomnode(arbre_s[tax2]); | ^~~~ least_squares_brl.cxx:310:54: note: ‘tax2’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~ least_squares_brl.cxx:349:17: warning: ‘sommebi’ may be used uninitialized [-Wmaybe-uninitialized] 349 | if (sommebi == 2) { | ^~ least_squares_brl.cxx:310:39: note: ‘sommebi’ was declared here 310 | int notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1; | ^~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pseudoterminal.cxx trees.cxx: In function ‘add_equally_best(char*, char*, int)’: trees.cxx:2047:46: warning: ‘]’ directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] 2047 | snprintf(q, 30, "[equally best tree #%d]", ++rank); | ^ In file included from /usr/include/stdio.h:970, from seaview.h:3, from trees.cxx:6: In function ‘snprintf’, inlined from ‘add_equally_best(char*, char*, int)’ at trees.cxx:2047:15: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 23 and 32 bytes into a destination of size 30 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ addbootstrap.cxx: In function ‘compute_consensus_tree(char**, int**, int)’: addbootstrap.cxx:896:7: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized] 896 | if (k < height) { // columns were not all identical, try columns on 0-side of branch i | ^~ addbootstrap.cxx:854:13: note: ‘k’ was declared here 854 | int i, j, k, l, w, word, restbranches, j1; | ^ pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’: pseudoterminal.cxx:354:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 354 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pseudoterminal.cxx:355:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 355 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2408:59: warning: ‘%d’ directive output may be truncated writing between 1 and 10 bytes into a region of size 9 [-Wformat-truncation=] 2408 | snprintf(tmp, 30, "Bootstrap replicate: %d", j + 1); | ^~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: trees.cxx:2408:37: note: directive argument in the range [1, 2147483647] 2408 | snprintf(tmp, 30, "Bootstrap replicate: %d", j + 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’ at trees.cxx:2408:13, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 23 and 32 bytes into a destination of size 30 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2091:62: warning: ‘ best trees, ’ directive output may be truncated writing 13 bytes into a region of size between 12 and 21 [-Wformat-truncation=] 2091 | if (count_best > 1) snprintf(best, 35, "consensus of %d best trees, ", count_best); | ^~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2091:35: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 28 and 37 bytes into a destination of size 35 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’, inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2085:36: trees.cxx:2453:41: warning: ‘all_best’ may be used uninitialized [-Wmaybe-uninitialized] 2453 | if (count > 1) tree = add_equally_best(tree, all_best, count); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’: trees.cxx:2386:40: note: ‘all_best’ was declared here 2386 | char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL; | ^~~~~~~~ In file included from /usr/include/FL/Fl_Return_Button.H:22, from seaview.h:18: In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2288:26: /usr/include/FL/Fl_Button.H:103:30: warning: ‘thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 103 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2194:20: note: ‘thorough_b’ was declared here 2194 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~ In member function ‘Fl_Button::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2289:36: /usr/include/FL/Fl_Button.H:103:30: warning: ‘less_thorough_b’ may be used uninitialized [-Wmaybe-uninitialized] 103 | char value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2194:33: note: ‘less_thorough_b’ was declared here 2194 | Fl_Round_Button *thorough_b, *less_thorough_b; | ^~~~~~~~~~~~~~~ In file included from /usr/include/FL/Fl_Input.H:23, from seaview.h:16: In member function ‘Fl_Input_::value() const’, inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2291:22: /usr/include/FL/Fl_Input_.H:263:37: warning: ‘w_best’ may be used uninitialized [-Wmaybe-uninitialized] 263 | const char* value() const {return value_;} | ^~~~~~ trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’: trees.cxx:2195:17: note: ‘w_best’ was declared here 2195 | Fl_Int_Input *w_best; | ^~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" unrooted.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" pdf_or_ps.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" svg.cxx trees.cxx: In function ‘run_distance_method(_SEA_VIEW*, int, int, int, int, int, Fl_Box*, char const*, int, char const*, char const*, int, void (*)(char const*, ...), int, int)’: trees.cxx:522:24: warning: ‘display_tree’ may be used uninitialized [-Wmaybe-uninitialized] 522 | return display_tree; | ^~~~~~~~~~~~ trees.cxx:461:15: note: ‘display_tree’ was declared here 461 | char *display_tree, *bootstrap_trees = NULL, *err_mess, tree_label[100]=""; | ^~~~~~~~~~~~ unrooted.cxx: In function ‘hit try_angle_draw(float, int*, int*, float*, int, int, int, int)’: unrooted.cxx:636:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 636 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 636 | if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4; | ^~ unrooted.cxx:637:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 637 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 637 | if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4; | ^~ unrooted.cxx:638:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 638 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:638:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 638 | if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4; | ^~ unrooted.cxx:639:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 639 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ unrooted.cxx:639:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 639 | if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4; | ^~ treedraw.cxx: In function ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’: treedraw.cxx:2652:40: warning: ‘%g’ directive output may be truncated writing between 1 and 13 bytes into a region of size 10 [-Wformat-truncation=] 2652 | snprintf(++arbre, 11,":%g",centre->l1); | ^~ treedraw.cxx:2652:38: note: assuming directive output of 12 bytes 2652 | snprintf(++arbre, 11,":%g",centre->l1); | ^~~~~ In file included from /usr/include/stdio.h:970, from /usr/include/FL/fl_utf8.h:32, from /usr/include/FL/Fl.H:33, from /usr/include/FL/Fl_Widget.H:25, from /usr/include/FL/Fl_Button.H:24, from treedraw.cxx:10: In function ‘snprintf’, inlined from ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’ at treedraw.cxx:2652:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 15 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ treedraw.cxx: In function ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’: treedraw.cxx:2661:40: warning: ‘%g’ directive output may be truncated writing between 1 and 13 bytes into a region of size 10 [-Wformat-truncation=] 2661 | snprintf(++arbre, 11,":%g",centre->l2); | ^~ treedraw.cxx:2661:38: note: assuming directive output of 12 bytes 2661 | snprintf(++arbre, 11,":%g",centre->l2); | ^~~~~ In function ‘snprintf’, inlined from ‘recur_ecrit_arbre(FD_nj_plot*, noeud*, char*, char*)’ at treedraw.cxx:2661:11: /usr/include/bits/stdio2.h:68:35: note: ‘__snprintf_chk’ output between 3 and 15 bytes into a destination of size 11 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" threads.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" tbe.cxx tbe.cxx: In function ‘TBE_Compute(char*, char*)’: tbe.cxx:85:16: warning: pointer ‘ref_branches_65’ used after ‘free’ [-Wuse-after-free] 85 | TBE_PrintTree(newtree,fd_reftree,ref_branches, nboot); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tbe.cxx:83:7: note: call to ‘free’ here 83 | free(ref_branches); | ~~~~^~~~~~~~~~~~~~ trees.cxx: In function ‘command_line_phylogeny(int, char**)’: trees.cxx:2871:3: warning: ‘tree’ may be used uninitialized [-Wmaybe-uninitialized] 2871 | if (tree) { | ^~ trees.cxx:2774:9: note: ‘tree’ was declared here 2774 | char *tree, *p; | ^~~~ unrooted.cxx: In function ‘set_angles_noeuds(_bignoeud*, _bignoeud*, double, double*, double)’: unrooted.cxx:1123:48: warning: ‘poids1’ may be used uninitialized [-Wmaybe-uninitialized] 1123 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1082:20: note: ‘poids1’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1123:64: warning: ‘poids2’ may be used uninitialized [-Wmaybe-uninitialized] 1123 | debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2); | ~~~~~~^~~~~~~ unrooted.cxx:1082:28: note: ‘poids2’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~~ unrooted.cxx:1130:16: warning: ‘poids’ may be used uninitialized [-Wmaybe-uninitialized] 1130 | return poids; | ^~~~~ unrooted.cxx:1082:13: note: ‘poids’ was declared here 1082 | int poids, poids1, poids2; | ^~~~~ c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" treerecs_draw.cxx c++ -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I. -Icsrc -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" FL/Fl_SVG_Image.cxx cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/raa_acnuc.c csrc/raa_acnuc.c: In function ‘raa_bit1’: csrc/raa_acnuc.c:1086:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1086 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_bit0’: csrc/raa_acnuc.c:1096:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1096 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_copylist’: csrc/raa_acnuc.c:1117:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1117 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_zerolist’: csrc/raa_acnuc.c:1127:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1127 | char *reponse; | ^~~~~~~ csrc/raa_acnuc.c: In function ‘raa_setliststate’: csrc/raa_acnuc.c:1137:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable] 1137 | char *reponse, str_type[3]; | ^~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/parser.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/md5.c csrc/md5.c:200:34: warning: argument 1 of type ‘uint32[4]’ {aka ‘unsigned int[4]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~^~~~~~ csrc/md5.c:47:35: note: previously declared as ‘uint32 *’ {aka ‘unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~^~~ csrc/md5.c:200:55: warning: argument 2 of type ‘const uint32[16]’ {aka ‘const unsigned int[16]’} with mismatched bound [-Warray-parameter=] 200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16]) | ~~~~~~~~~~~~~^~~~~~ csrc/md5.c:47:54: note: previously declared as ‘const uint32 *’ {aka ‘const unsigned int *’} 47 | static void MD5_Transform(uint32 *buf, uint32 const *in); | ~~~~~~~~~~~~~~^~ treerecs_draw.cxx: In member function ‘virtual void Fl_SVG_Box::draw()’: treerecs_draw.cxx:658:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 658 | while(i < svgtexts_size){ | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)’: treerecs_draw.cxx:742:10: warning: ‘Fl_SVG_Box::zoom’ will be initialized after [-Wreorder] 742 | double zoom; | ^~~~ treerecs_draw.cxx:740:10: warning: ‘double Fl_SVG_Box::svg_shift_x’ [-Wreorder] 740 | double svg_shift_x; | ^~~~~~~~~~~ treerecs_draw.cxx:690:13: warning: when initialized here [-Wreorder] 690 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx:741:10: warning: ‘Fl_SVG_Box::svg_shift_y’ will be initialized after [-Wreorder] 741 | double svg_shift_y; | ^~~~~~~~~~~ treerecs_draw.cxx:737:16: warning: ‘unsigned int Fl_SVG_Box::svgtexts_size’ [-Wreorder] 737 | unsigned int svgtexts_size; | ^~~~~~~~~~~~~ treerecs_draw.cxx:690:13: warning: when initialized here [-Wreorder] 690 | FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) : | ^~~~~~~~~~ treerecs_draw.cxx: In destructor ‘virtual Fl_SVG_Box::~Fl_SVG_Box()’: treerecs_draw.cxx:726:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 726 | for(int i = 0; i < svgtexts_size ; i++) { | ~~^~~~~~~~~~~~~~~ treerecs_draw.cxx: In constructor ‘SVG_View_data::SVG_View_data()’: treerecs_draw.cxx:766:15: warning: ‘SVG_View_data::reconciliation_score_message’ will be initialized after [-Wreorder] 766 | const char* reconciliation_score_message; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ treerecs_draw.cxx:763:9: warning: ‘float SVG_View_data::total_cost’ [-Wreorder] 763 | float total_cost; | ^~~~~~~~~~ treerecs_draw.cxx:768:3: warning: when initialized here [-Wreorder] 768 | SVG_View_data() : | ^~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/zsockr.c treedraw.cxx: In function ‘plotonly(int, char**)’: treedraw.cxx:3678:18: warning: ‘svg’ may be used uninitialized [-Wmaybe-uninitialized] 3678 | svg_tree_save(fd_nj_plot, svg); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ treedraw.cxx:3605:21: note: ‘svg’ was declared here 3605 | SVG_File_Surface *svg; | ^~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/misc_acnuc.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/dnapars.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/protpars.c csrc/dnapars.c: In function ‘dnapars’: csrc/dnapars.c:1682:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1682 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ csrc/protpars.c: In function ‘protpars’: csrc/protpars.c:2096:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2096 | fread(tree, L, 1, outtree); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/seq.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phylip.c csrc/seq.c: In function ‘collapsetree’: csrc/seq.c:4015:11: warning: variable ‘j’ set but not used [-Wunused-but-set-variable] 4015 | long i, j, index, index2, numd; | ^ csrc/phylip.c: In function ‘scan_eoln’: csrc/phylip.c:161:8: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable] 161 | char ch; | ^~ csrc/phylip.c: In function ‘stringnames_new’: csrc/phylip.c:2980:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] 2980 | long len, i; | ^~~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/lwl.c csrc/lwl.c: In function ‘prefastlwl’: csrc/lwl.c:412:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 412 | else | ^~~~ csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 414 | aa[9] = 14;/* agc S */ | ^~ csrc/lwl.c:417:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 417 | else | ^~~~ csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 419 | aa[11] = 14;/* agt S */ | ^~ csrc/lwl.c:422:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 422 | else | ^~~~ csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 424 | aa[13] = 7;/* atc I */ | ^~ csrc/lwl.c:469:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 469 | else | ^~~~ csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 471 | aa[57] = 10;/* tgc */ | ^~ cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/bionj.c cc -c -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function ‘Warn_And_Exit’: csrc/phyml_util.c:47:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ c++ -o seaview -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz -Wl,-z,muldefs treedraw.cxx:43:16: warning: type ‘struct branche’ violates the C++ One Definition Rule [-Wodr] 43 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:17:16: note: a different type is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field ‘bits’ 21 | int *bits; | ^ addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit 17 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ use_mase_files.cxx:115:12: warning: ‘isarg’ violates the C++ One Definition Rule [-Wodr] 115 | extern int isarg(int argc, char *argv[], const char *arg); | ^ treedraw.cxx:3369:6: note: return value type mismatch 3369 | bool isarg(int argc, char *argv[], const char *arg) | ^ treedraw.cxx:3369:6: note: type ‘bool’ should match type ‘int’ treedraw.cxx:3369:6: note: ‘isarg’ was previously declared here treedraw.cxx:3369:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used In function ‘really_close’, inlined from ‘exit_button_proc’ at xfmatpt.cxx:898:18: xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); | ^ xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ^ In function ‘show_dot_plot’, inlined from ‘edit_menu_callback’ at seaview.cxx:2549:15: xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘_750->seq1’ with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); | ^ xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘_750->seq2’ with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ^ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.jAYh6O + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + '[' /builddir/build/BUILD/seaview-5.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/seaview-5.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.1-build + mkdir /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + rm -rf /builddir/build/BUILD/seaview-5.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/seaview + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/bin + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/share/man/man1 + install -m 755 seaview /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/bin + desktop-file-install --dir /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/seaview.desktop + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/ + install -m 0644 -p seaview.xpm /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/seaview.xpm + install -m 0644 -p seaview.svg /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/pixmaps/seaview.svg + mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/appdata/ + install -m 0644 -p seaview.appdata.xml /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/appdata/seaview.appdata.xml + install -m 644 seaview.1 /builddir/build/BUILD/seaview-5.1-build/BUILDROOT//usr/share/man/man1 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.1-2.fc44 --unique-debug-suffix -5.1-2.fc44.x86_64 --unique-debug-src-base seaview-5.1-2.fc44.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seaview-5.1-build/seaview find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/seaview-5.1-2.fc44.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j4 /builddir/build/BUILD/seaview-5.1-build/BUILDROOT Scanned 19 directories and 60 files, processed 1 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr Scanned 18 directories and 60 files, considered 60 files, read 2 files, linked 1 files, 0 errors sum of sizes of linked files: 3757 bytes Reading /builddir/build/BUILD/seaview-5.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.YcLcZo + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seaview + RPM_EC=0 ++ jobs -p + exit 0 Processing files: seaview-5.1-2.fc44.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DltLtq + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + cd seaview + DOCDIR=/builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.1-build/seaview/seaview.1.xml /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + cp -pr /builddir/build/BUILD/seaview-5.1-build/seaview/seaview.html /builddir/build/BUILD/seaview-5.1-build/BUILDROOT/usr/share/doc/seaview + RPM_EC=0 ++ jobs -p + exit 0 Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 5.1-2.fc44 seaview(x86-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfltk.so.1.4()(64bit) libfltk_images.so.1.4()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: seaview-debugsource-5.1-2.fc44.x86_64 Provides: seaview-debugsource = 5.1-2.fc44 seaview-debugsource(x86-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seaview-debuginfo-5.1-2.fc44.x86_64 Provides: debuginfo(build-id) = 85d93c100d7a6b48ddf68f33bbb75050694a514e seaview-debuginfo = 5.1-2.fc44 seaview-debuginfo(x86-64) = 5.1-2.fc44 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seaview-debugsource(x86-64) = 5.1-2.fc44 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/seaview-5.1-build/BUILDROOT Wrote: /builddir/build/RPMS/seaview-5.1-2.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/seaview-debugsource-5.1-2.fc44.x86_64.rpm Wrote: /builddir/build/RPMS/seaview-debuginfo-5.1-2.fc44.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.vcO6Qj + umask 022 + cd /builddir/build/BUILD/seaview-5.1-build + test -d /builddir/build/BUILD/seaview-5.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/seaview-5.1-build + rm -rf /builddir/build/BUILD/seaview-5.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seaview-5.1-2.fc44.src.rpm Finish: build phase for seaview-5.1-2.fc44.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1762037905.076607/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/seaview-5.1-2.fc44.src.rpm) Config(child) 0 minutes 21 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "seaview", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "x86_64" }, { "name": "seaview", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "src" }, { "name": "seaview-debuginfo", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "x86_64" }, { "name": "seaview-debugsource", "epoch": null, "version": "5.1", "release": "2.fc44", "arch": "x86_64" } ] } RPMResults finished