getTrace {AnaCoDa} | R Documentation |
extracts an object of traces from a parameter object.
getTrace(parameter)
parameter |
A Parameter object that corresponds to one of the model types. |
trace Returns an object of type Trace extracted from the given parameter object
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
genome <- initializeGenomeObject(file = genome_file)
sphi_init <- c(1,1)
numMixtures <- 2
geneAssignment <- c(rep(1,floor(length(genome)/2)),rep(2,ceiling(length(genome)/2)))
parameter <- initializeParameterObject(genome = genome, sphi = sphi_init,
num.mixtures = numMixtures,
gene.assignment = geneAssignment,
mixture.definition = "allUnique")
trace <- getTrace(parameter) # empty trace object since no MCMC was perfomed