Mock Version: 3.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-AnaCoDa.spec'], chrootPath='/var/lib/mock/fedora-37-x86_64-1663572864.972471/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f6d0684b820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0fbf537533634dc0b272a8b6539b150b', '-D', '/var/lib/mock/fedora-37-x86_64-1663572864.972471/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-AnaCoDa.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.src.rpm
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-AnaCoDa.spec'], chrootPath='/var/lib/mock/fedora-37-x86_64-1663572864.972471/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f6d0684b820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ddba4f904ac54f06b3f6e670a9c0dfa7', '-D', '/var/lib/mock/fedora-37-x86_64-1663572864.972471/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.qgfgi3xo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-AnaCoDa.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xrYBrW
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf AnaCoDa
+ /usr/bin/mkdir -p AnaCoDa
+ cd AnaCoDa
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/AnaCoDa_0.1.4.4.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';'
+ '[' -d AnaCoDa/src ']'
+ find AnaCoDa/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.XMHGdD
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd AnaCoDa
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DnDSYg
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
++ dirname /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd AnaCoDa
+ mkdir -p /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library AnaCoDa
* installing *source* package 'AnaCoDa' ...
file 'tests/testthat.R' has the wrong MD5 checksum
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -m64 -std=gnu++11 accepts -g... yes
checking how to run the C++ preprocessor... g++ -m64 -std=gnu++11 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ -m64 -std=gnu++11 accepts -g... (cached) yes
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for g++ -m64 -std=gnu++11 option to support OpenMP... -fopenmp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... no
checking for inline... inline
checking for size_t... yes
checking for sqrt... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c CodonTable.cpp -o CodonTable.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c CovarianceMatrix.cpp -o CovarianceMatrix.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c FONSEModel.cpp -o FONSEModel.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c FONSEParameter.cpp -o FONSEParameter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Gene.cpp -o Gene.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Genome.cpp -o Genome.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c MCMCAlgorithm.cpp -o MCMCAlgorithm.o
MCMCAlgorithm.cpp: In member function 'double MCMCAlgorithm::acceptRejectSynthesisRateLevelForAllGenes(Genome&, Model&, int)':
MCMCAlgorithm.cpp:112:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  112 |         for (unsigned i = 0u; i < numGenes; i++)
      |                               ~~^~~~~~~~~~
MCMCAlgorithm.cpp: In member function 'void MCMCAlgorithm::run(Genome&, Model&, unsigned int, unsigned int)':
MCMCAlgorithm.cpp:552:44: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  552 |         for (int iteration = 1u; iteration <= maximumIterations; iteration++)
      |                                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MCMCAlgorithm.cpp: In member function 'void MCMCAlgorithm::run_PANSE(Genome&, PANSEModel&, unsigned int, unsigned int)':
MCMCAlgorithm.cpp:701:44: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  701 |         for (int iteration = 1u; iteration <= maximumIterations; iteration++)
      |                                  ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
MCMCAlgorithm.cpp: In static member function 'static std::vector<std::vector<double> > MCMCAlgorithm::solveToeplitzMatrix(int, std::vector<double>, std::vector<double>)':
MCMCAlgorithm.cpp:1239:32: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
 1239 |         for (unsigned l = 1; l < lr; l++)
      |                              ~~^~~~
MCMCAlgorithm.cpp:1263:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
 1263 |                 if (l == lr) return returnVec;
      |                     ~~^~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Model.cpp -o Model.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c PAModel.cpp -o PAModel.o
PAModel.cpp: In member function 'virtual void PAModel::calculateZ(std::string, Genome&, std::vector<double>&)':
PAModel.cpp:58:26: warning: unused variable 'currNumCodonsInMRNA' [-Wunused-variable]
   58 |                 unsigned currNumCodonsInMRNA = gene->geneData.getCodonCountForCodon(codon);
      |                          ^~~~~~~~~~~~~~~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c PANSEModel.cpp -o PANSEModel.o
PANSEModel.cpp: In member function 'virtual void PANSEModel::simulateGenome(Genome&)':
PANSEModel.cpp:1255:18: warning: unused variable 'lambdaCategory' [-Wunused-variable]
 1255 |         unsigned lambdaCategory = parameter->getSelectionCategory(mixtureElement);
      |                  ^~~~~~~~~~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c PANSEParameter.cpp -o PANSEParameter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c PAParameter.cpp -o PAParameter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Parameter.cpp -o Parameter.o
Parameter.cpp: In member function 'void Parameter::adaptSynthesisRateProposalWidth(unsigned int, bool)':
Parameter.cpp:1397:16: warning: unused variable 'adjustFactor' [-Wunused-variable]
 1397 |         double adjustFactor = 1.0; //variable assigned value of either adjustFactorLow or adjustFactorHigh depending on acceptance rate
      |                ^~~~~~~~~~~~
Parameter.cpp: In member function 'std::vector<double> Parameter::getExpressionQuantile(unsigned int, unsigned int, std::vector<double>, bool)':
Parameter.cpp:1988:35: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1988 |                 for (int i = 0; i < probs.size();i++)
      |                                 ~~^~~~~~~~~~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c RCPP_Model.cpp -o RCPP_Model.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c RCPP_Parameter.cpp -o RCPP_Parameter.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c RCPP_Trace.cpp -o RCPP_Trace.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ROCModel.cpp -o ROCModel.o
ROCModel.cpp: In member function 'virtual void ROCModel::calculateLogLikelihoodRatioPerGroupingPerCategory(std::string, Genome&, std::vector<double>&)':
ROCModel.cpp:177:33: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
  177 |         for (unsigned i = 0u; i < numGenes; i++)
      |                               ~~^~~~~~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c ROCParameter.cpp -o ROCParameter.o
ROCParameter.cpp: In member function 'void ROCParameter::initROCParameterSet()':
ROCParameter.cpp:82:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   82 |         for (int i=0; i < numMutationCategories; i++)
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~
ROCParameter.cpp: In member function 'void ROCParameter::initROCValuesFromFile(std::string)':
ROCParameter.cpp:324:75: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  324 |                                                         for (int i = 0; i < numMutationCategories;i++)
      |                                                                         ~~^~~~~~~~~~~~~~~~~~~~~~~
ROCParameter.cpp:342:35: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  342 |                 for (int i = 0; i < numMutationCategories;i++)
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c SequenceSummary.cpp -o SequenceSummary.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Testing.cpp -o Testing.o
Testing.cpp: In function 'int testSequenceSummary()':
Testing.cpp:874:22: warning: comparison of integer expressions of different signedness: '__gnu_cxx::__alloc_traits<std::allocator<unsigned int>, unsigned int>::value_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
  874 |         if (iVect[i] != tmp)
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c Trace.cpp -o Trace.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include  -fopenmp -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c main.cpp -o main.o
gcc -m64 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o AnaCoDa.so CodonTable.o CovarianceMatrix.o FONSEModel.o FONSEParameter.o Gene.o Genome.o MCMCAlgorithm.o Model.o PAModel.o PANSEModel.o PANSEParameter.o PAParameter.o Parameter.o RCPP_Model.o RCPP_Parameter.o RCPP_Trace.o ROCModel.o ROCParameter.o SequenceSummary.o Testing.o Trace.o main.o registerDynamicSymbol.o -fopenmp -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library/00LOCK-AnaCoDa/00new/AnaCoDa/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'AnaCoDa'
    finding HTML links ... done
    AAToCodon                               html  
    acfCSP                                  html  
    acfMCMC                                 html  
    addObservedSynthesisRateSet             html  
    aminoAcids                              html  
    calculateMarginalLogLikelihood          html  
    calculateSCUO                           html  
    codonToAA                               html  
    codons                                  html  
    convergence.test                        html  
    findOptimalCodon                        html  
    fixDEta                                 html  
    fixDM                                   html  
    fixSphi                                 html  
    geomMean                                html  
    getAdaptiveWidth                        html  
    getCAI                                  html  
    getCAIweights                           html  
    getCSPEstimates                         html  
    getCodonCounts                          html  
    getCodonCountsForAA                     html  
    getCodonSpecificPosteriorMeanForCodon   html  
    getCodonSpecificPosteriorVarianceForCodon
                                            html  
    getCodonSpecificQuantilesForCodon       html  
    getEstimatedMixtureAssignmentForGene    html  
    getEstimatedMixtureAssignmentProbabilitiesForGene
                                            html  
    getExpressionEstimates                  html  
    getGroupList                            html  
    getLogLikelihoodTrace                   html  
    getLogPosteriorMean                     html  
    getLogPosteriorTrace                    html  
    getMixtureAssignmentEstimate            html  
    getNames                                html  
    getNc                                   html  
    getNcAA                                 html  
    getNoiseOffsetPosteriorMean             html  
    getNoiseOffsetVariance                  html  
    getObservedSynthesisRateSet             html  
    getSamples                              html  
    getSelectionCoefficients                html  
    getStdDevSynthesisRatePosteriorMean     html  
    getStdDevSynthesisRateVariance          html  
    getStepsToAdapt                         html  
    getSynthesisRate                        html  
    getSynthesisRatePosteriorMeanForGene    html  
    getSynthesisRatePosteriorVarianceForGene
                                            html  
    getThinning                             html  
    getTrace                                html  
    getTraceObject                          html  
    initMutationCategories                  html  
    initSelectionCategories                 html  
    initializeCovarianceMatrices            html  
    initializeGenomeObject                  html  
    initializeMCMCObject                    html  
    initializeModelObject                   html  
    initializeParameterObject               html  
    initializeSynthesisRateByGenome         html  
    initializeSynthesisRateByList           html  
    initializeSynthesisRateByRandom         html  
    length.Rcpp_Genome                      html  
    loadMCMCObject                          html  
    loadParameterObject                     html  
    plot.Rcpp_FONSEModel                    html  
    plot.Rcpp_FONSEParameter                html  
    plot.Rcpp_MCMCAlgorithm                 html  
    plot.Rcpp_ROCModel                      html  
    plot.Rcpp_ROCParameter                  html  
    plot.Rcpp_Trace                         html  
    plotAcceptanceRatios                    html  
    plotCodonSpecificParameters             html  
    readPhiValue                            html  
    runMCMC                                 html  
    setAdaptiveWidth                        html  
    setGroupList                            html  
    setRestartFileSettings                  html  
    setRestartSettings                      html  
    setSamples                              html  
    setStepsToAdapt                         html  
    setThinning                             html  
    simulateGenome                          html  
    summary.Rcpp_Genome                     html  
    writeMCMCObject                         html  
    writeParameterObject                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AnaCoDa)
+ test -d AnaCoDa/src
+ cd AnaCoDa/src
+ rm -f CodonTable.o CovarianceMatrix.o FONSEModel.o FONSEParameter.o Gene.o Genome.o MCMCAlgorithm.o Model.o PAModel.o PANSEModel.o PANSEParameter.o PAParameter.o Parameter.o RCPP_Model.o RCPP_Parameter.o RCPP_Trace.o ROCModel.o ROCParameter.o SequenceSummary.o Testing.o Trace.o main.o registerDynamicSymbol.o AnaCoDa.so
+ rm -f /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library/R.css
+ find /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64@@g '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.4.4-1.fc37.copr4847510 --unique-debug-suffix -0.1.4.4-1.fc37.copr4847510.x86_64 --unique-debug-src-base R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/AnaCoDa
extracting debug info from /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/usr/local/lib/R/library/AnaCoDa/libs/AnaCoDa.so
original debug info size: 36500kB, size after compression: 33164kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
1686 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/PANSE/PANSEParameter.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/PA/PAParameter.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/Genome.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/Gene.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/FONSE/FONSEParameter.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/FONSE/FONSEModel.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/include/CodonTable.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/RCPP_Parameter.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/PANSEParameter.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64/AnaCoDa/src/Genome.cpp is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
Provides: R-CRAN-AnaCoDa = 0.1.4.4-1.fc37.copr4847510 R-CRAN-AnaCoDa(x86-64) = 0.1.4.4-1.fc37.copr4847510
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: R-CRAN-AnaCoDa-debugsource-0.1.4.4-1.fc37.copr4847510.x86_64
Provides: R-CRAN-AnaCoDa-debugsource = 0.1.4.4-1.fc37.copr4847510 R-CRAN-AnaCoDa-debugsource(x86-64) = 0.1.4.4-1.fc37.copr4847510
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-CRAN-AnaCoDa-debuginfo-0.1.4.4-1.fc37.copr4847510.x86_64
Provides: R-CRAN-AnaCoDa-debuginfo = 0.1.4.4-1.fc37.copr4847510 R-CRAN-AnaCoDa-debuginfo(x86-64) = 0.1.4.4-1.fc37.copr4847510 debuginfo(build-id) = bf4437756e2d39f5e00ee66efe5fb0c9aa5c171c
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-CRAN-AnaCoDa-debugsource(x86-64) = 0.1.4.4-1.fc37.copr4847510
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
Wrote: /builddir/build/RPMS/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-AnaCoDa-debugsource-0.1.4.4-1.fc37.copr4847510.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-AnaCoDa-debuginfo-0.1.4.4-1.fc37.copr4847510.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.xn6wCp
+ umask 022
+ cd /builddir/build/BUILD
+ cd AnaCoDa
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-AnaCoDa-0.1.4.4-1.fc37.copr4847510.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Q8uWyw
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf AnaCoDa AnaCoDa.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0