Mock Version: 3.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-fastkmedoids.spec'], chrootPath='/var/lib/mock/fedora-37-x86_64-1663590423.218864/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f7867323820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '4c8eb0538edd48059e8f8697c54678e3', '-D', '/var/lib/mock/fedora-37-x86_64-1663590423.218864/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-fastkmedoids.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.src.rpm
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-fastkmedoids.spec'], chrootPath='/var/lib/mock/fedora-37-x86_64-1663590423.218864/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f7867323820>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'de7ea5ec60e34ccf90f2828922f3565f', '-D', '/var/lib/mock/fedora-37-x86_64-1663590423.218864/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3_z8fe5d:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-fastkmedoids.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
warning: source_date_epoch_from_changelog set but %changelog is missing
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.6SsAOX
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf fastkmedoids
+ /usr/bin/mkdir -p fastkmedoids
+ cd fastkmedoids
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/fastkmedoids_1.2.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';'
+ '[' -d fastkmedoids/src ']'
+ find fastkmedoids/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';'
+ find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ouTGFq
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd fastkmedoids
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BIOCt9
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
++ dirname /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd fastkmedoids
+ mkdir -p /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library
+ /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library fastkmedoids
* installing *source* package 'fastkmedoids' ...
** package 'fastkmedoids' successfully unpacked and MD5 sums checked
** using staged installation
** libs
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c RcppExports.cpp -o RcppExports.o
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c pam.cpp -o pam.o
In file included from pam.cpp:21:
pam.h: In member function 'int Xoroshiro128Random::nextInt(int)':
pam.h:57:55: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
   57 |         int r =  (int)((n & -n) == n ? nextLong() & n - 1 // power of two
      |                                                     ~~^~~
pam.h: In member function 'std::vector<int> Xoroshiro128Random::randomSample(int, int)':
pam.h:82:35: warning: comparison of integer expressions of different signedness: 'std::unordered_map<int, bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
   82 |         while (sample_dict.size() < samplesize) {
      |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
pam.cpp: In member function 'double LAB::getMinDist(int, std::vector<int>&, std::vector<double>&)':
pam.cpp:132:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  132 |         for (int i=0; i<medids.size(); ++i) {
      |                       ~^~~~~~~~~~~~~~
pam.cpp: In member function 'virtual std::vector<int> LAB::run(const std::vector<int>&, int)':
pam.cpp:166:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  166 |             for (int j=0; j<tempd.size(); ++j) tempd[j] = DBL_MIN;
      |                           ~^~~~~~~~~~~~~
pam.cpp:191:25: warning: comparison of integer expressions of different signedness: 'std::vector<int>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  191 |     while(medids.size() < k) {
      |           ~~~~~~~~~~~~~~^~~
pam.cpp:203:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  203 |             for (int j=0; j<tempd.size(); ++j) tempd[j] = DBL_MIN;
      |                           ~^~~~~~~~~~~~~
pam.cpp: In member function 'virtual double PAM::assignToNearestCluster(std::vector<int>&)':
pam.cpp:374:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  374 |         for (int j=0; j<means.size(); ++j) {
      |                       ~^~~~~~~~~~~~~
pam.cpp: In member function 'void FastPAM::findBestSwaps(std::vector<int>&, std::vector<int>&, std::vector<double>&, std::vector<double>&)':
pam.cpp:522:24: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
  522 |         for (int j=0; j<n_medoids; ++j) cost[j] = -nearest[h];
      |                       ~^~~~~~~~~~
pam.cpp:527:26: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  527 |         for(int i = 0; i < cost.size(); i++) {
      |                        ~~^~~~~~~~~~~~~
pam.cpp: In member function 'virtual void FastPAM::computeReassignmentCost(int, std::vector<double>&)':
pam.cpp:566:37: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  566 |             for(int pi = pj + 1; pi < cost.size(); pi++) {
      |                                  ~~~^~~~~~~~~~~~~
pam.cpp: In member function 'virtual double FastPAM::assignToNearestCluster(std::vector<int>&)':
pam.cpp:608:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  608 |         for (int h=0; h< means.size(); ++h) {
      |                       ~^~~~~~~~~~~~~~
pam.cpp: In member function 'int FastPAM::argmin(const std::vector<double>&)':
pam.cpp:639:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  639 |     for(int i = 0; i < best.size(); i++) {
      |                    ~~^~~~~~~~~~~~~
pam.cpp: In member function 'int FastPAM::updateSecondNearest(int, std::vector<int>&, int, double, int)':
pam.cpp:716:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  716 |     for (int i=0; i<medoids.size(); ++i) {
      |                   ~^~~~~~~~~~~~~~~
pam.cpp: In static member function 'static std::vector<int> PAMUtils::randomSample(Xoroshiro128Random&, int, int, const std::vector<int>&)':
pam.cpp:740:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  740 |     for (int i=0; i<previous.size(); ++i) {
      |                   ~^~~~~~~~~~~~~~~~
pam.cpp:748:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  748 |     for (int i=0; i<rest_rnds.size(); ++i) {
      |                   ~^~~~~~~~~~~~~~~~~
pam.cpp:756:28: warning: comparison of integer expressions of different signedness: 'std::unordered_map<int, bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  756 |     if (sample_dict.size() < samplesize) {
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
pam.cpp:761:58: warning: comparison of integer expressions of different signedness: 'std::unordered_map<int, bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  761 |         for (int i=0; i<samplesize && sample_dict.size() < samplesize; ++i) {
      |                                       ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
pam.cpp: In member function 'virtual double CLARA::run()':
pam.cpp:822:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  822 |             for (int k=0; k<bestmedoids.size(); ++k ) {
      |                           ~^~~~~~~~~~~~~~~~~~~
pam.cpp: In member function 'double CLARA::assignRemainingToNearestCluster(std::vector<int>&, std::vector<int>&, std::vector<int>&, std::vector<int>&)':
pam.cpp:844:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  844 |     for (int j=0; j<r_assignment.size(); ++j) {
      |                   ~^~~~~~~~~~~~~~~~~~~~
pam.cpp:856:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  856 |         for (int i=0; i<means.size(); ++i) {
      |                       ~^~~~~~~~~~~~~
pam.cpp: In member function 'virtual double FastCLARA::run()':
pam.cpp:916:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  916 |             for (int k=0; k<bestmedoids.size(); ++k ) {
      |                           ~^~~~~~~~~~~~~~~~~~~
pam.cpp: In member function 'virtual double Assignment::recompute(int, int, double, int, double)':
pam.cpp:1119:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1119 |     for(int i = 0; i < medoids.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
pam.cpp: In member function 'virtual bool Assignment::hasMedoid(int)':
pam.cpp:1157:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1157 |         for (int i=0; i<medoids.size(); ++i) {
      |                       ~^~~~~~~~~~~~~~~
pam.cpp: In member function 'virtual double PAM::run(std::vector<int>&, int)':
pam.cpp:344:30: warning: 'bestid' may be used uninitialized [-Wmaybe-uninitialized]
  344 |         medoids[bestcluster] =  bestid;
pam.cpp:313:9: note: 'bestid' was declared here
  313 |     int bestid;
      |         ^~~~~~
g++ -m64 -std=gnu++11 -I"/usr/include/R" -DNDEBUG  -I'/usr/local/lib/R/library/Rcpp/include' -I/usr/local/include   -fpic  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64  -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection  -c rcpp_fastkmedoids.cpp -o rcpp_fastkmedoids.o
In file included from rcpp_fastkmedoids.cpp:19:
pam.h: In member function 'int Xoroshiro128Random::nextInt(int)':
pam.h:57:55: warning: suggest parentheses around '-' in operand of '&' [-Wparentheses]
   57 |         int r =  (int)((n & -n) == n ? nextLong() & n - 1 // power of two
      |                                                     ~~^~~
pam.h: In member function 'std::vector<int> Xoroshiro128Random::randomSample(int, int)':
pam.h:82:35: warning: comparison of integer expressions of different signedness: 'std::unordered_map<int, bool>::size_type' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
   82 |         while (sample_dict.size() < samplesize) {
      |                ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -m64 -std=gnu++11 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o fastkmedoids.so RcppExports.o pam.o rcpp_fastkmedoids.o -L/usr/lib64/R/lib -lR
installing to /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library/00LOCK-fastkmedoids/00new/fastkmedoids/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastkmedoids'
    finding HTML links ... done
    KmedoidsResult-class                    html  
    fastclara                               html  
    fastclarans                             html  
    fastkmedoids-package                    html  
    fastpam                                 html  
    pam                                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastkmedoids)
+ test -d fastkmedoids/src
+ cd fastkmedoids/src
+ rm -f RcppExports.o pam.o rcpp_fastkmedoids.o fastkmedoids.so
+ rm -f /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library/R.css
+ find /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64@@g '{}' ';'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.2-1.fc37.copr4849150 --unique-debug-suffix -1.2-1.fc37.copr4849150.x86_64 --unique-debug-src-base R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/fastkmedoids
extracting debug info from /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64/usr/local/lib/R/library/fastkmedoids/libs/fastkmedoids.so
original debug info size: 2204kB, size after compression: 2052kB
/usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
153 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0
+ /usr/lib/rpm/redhat/brp-python-hardlink
Processing files: R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
Provides: R-CRAN-fastkmedoids = 1.2-1.fc37.copr4849150 R-CRAN-fastkmedoids(x86-64) = 1.2-1.fc37.copr4849150
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: R-CRAN-fastkmedoids-debugsource-1.2-1.fc37.copr4849150.x86_64
Provides: R-CRAN-fastkmedoids-debugsource = 1.2-1.fc37.copr4849150 R-CRAN-fastkmedoids-debugsource(x86-64) = 1.2-1.fc37.copr4849150
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: R-CRAN-fastkmedoids-debuginfo-1.2-1.fc37.copr4849150.x86_64
Provides: R-CRAN-fastkmedoids-debuginfo = 1.2-1.fc37.copr4849150 R-CRAN-fastkmedoids-debuginfo(x86-64) = 1.2-1.fc37.copr4849150 debuginfo(build-id) = 64fb30276ff2914f481b17b7e47844b528143ee6
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: R-CRAN-fastkmedoids-debugsource(x86-64) = 1.2-1.fc37.copr4849150
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
Wrote: /builddir/build/RPMS/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-fastkmedoids-debugsource-1.2-1.fc37.copr4849150.x86_64.rpm
Wrote: /builddir/build/RPMS/R-CRAN-fastkmedoids-debuginfo-1.2-1.fc37.copr4849150.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ovTlZs
+ umask 022
+ cd /builddir/build/BUILD
+ cd fastkmedoids
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-fastkmedoids-1.2-1.fc37.copr4849150.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.9hMcxf
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf fastkmedoids fastkmedoids.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
    source_date_epoch_from_changelog set but %changelog is missing
Child return code was: 0