Retrieve Genomic and Clinical Data from CBioPortal Including TCGA Data


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Documentation for package ‘TCGAretriever’ version 1.7

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basic_tcga_query TCGA Core Query Engine
expand_cases Explode TCGA Case Identifiers from a TCGA Study
fetch_all_tcgadata Recursively Fetch All Data Included in a TCGA Study Subset
get_cancer_studies Retrieve a List of Cancer Studies Available at TCGA
get_cancer_types Retrieve a List of Cancer Types as Defined by the TCGA Guidelines
get_case_lists Retrieve All Case List Available for a Specific TCGA Study
get_clinical_data Retrieve Clinical Information from a TCGA Study
get_ext_mutation Retrieve Extended Information About DNA Mutations from TCGA
get_genetic_profiles Retrieve Genetic Profiles for a TCGA Study of Interest
get_profile_data Retrieve TCGA Data corresponding to a Specific Genetic Profile of Interest
make_groups Split Numeric Vectors in Groups
show_head Return a Subset of an Object