%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  dclone
%global packver   2.3-2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.3.2
Release:          1%{?dist}%{?buildtag}
Summary:          Data Cloning and MCMC Tools for Maximum Likelihood Methods

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.15.1
Requires:         R-core >= 2.15.1
BuildArch:        noarch
BuildRequires:    R-CRAN-rjags >= 4.4
BuildRequires:    R-CRAN-coda >= 0.13
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-methods 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-rstan 
BuildRequires:    R-CRAN-R2OpenBUGS 
BuildRequires:    R-CRAN-rstantools
Requires:         R-CRAN-rjags >= 4.4
Requires:         R-CRAN-coda >= 0.13
Requires:         R-parallel 
Requires:         R-CRAN-Matrix 
Requires:         R-methods 
Requires:         R-stats 
Requires:         R-CRAN-rstan 
Requires:         R-CRAN-R2OpenBUGS 
Requires:         R-CRAN-rstantools

%description
Low level functions for implementing maximum likelihood estimating
procedures for complex models using data cloning and Bayesian Markov chain
Monte Carlo methods as described in Solymos 2010
<doi:10.32614/RJ-2010-011>. Sequential and parallel MCMC support for
'JAGS', 'WinBUGS', 'OpenBUGS', and 'Stan'.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}