Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c15a' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6665701-fedora-37-x86_64 --chroot fedora-37-x86_64 Version: 0.69 PID: 24107 Logging PID: 24108 Task: {'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 6665701, 'buildroot_pkgs': [], 'chroot': 'fedora-37-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '7a3683b772983f82eccfc351ed3951056a2ebcf0', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-VAJointSurv', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-VAJointSurv', 'package_version': '0.1.0-1', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-37-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'submitter': 'iucar', 'tags': [], 'task_id': '6665701-fedora-37-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-VAJointSurv /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-VAJointSurv', '/var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv'... Running: git checkout 7a3683b772983f82eccfc351ed3951056a2ebcf0 -- cmd: ['git', 'checkout', '7a3683b772983f82eccfc351ed3951056a2ebcf0', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv rc: 0 stdout: stderr: Note: switching to '7a3683b772983f82eccfc351ed3951056a2ebcf0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 7a3683b automatic import of R-CRAN-VAJointSurv Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading VAJointSurv_0.1.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o VAJointSurv_0.1.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-VAJointSurv/VAJointSurv_0.1.0.tar.gz/md5/d3f9ebec3e5be56ebcefde43bd8d0acf/VAJointSurv_0.1.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1495k 100 1495k 0 0 11.3M 0 --:--:-- --:--:-- --:--:-- 11.3M INFO: Reading stdout from command: md5sum VAJointSurv_0.1.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv/R-CRAN-VAJointSurv.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700321097.186716 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv/R-CRAN-VAJointSurv.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1700321097.186716 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv/R-CRAN-VAJointSurv.spec) Config(fedora-37-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.2 INFO: Mock Version: 5.2 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-37-x86_64-1700321097.186716/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (fallback) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 32 kB/s | 1.5 kB 00:00 Copr repository 31 MB/s | 26 MB 00:00 fedora 569 kB/s | 26 kB 00:00 updates 313 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-1.fc37 updates 1.8 M bzip2 x86_64 1.0.8-12.fc37 fedora 52 k coreutils x86_64 9.1-8.fc37 updates 1.1 M cpio x86_64 2.13-13.fc37 fedora 277 k diffutils x86_64 3.8-3.fc37 fedora 378 k fedora-release-common noarch 37-18 updates 19 k findutils x86_64 1:4.9.0-2.fc37 fedora 492 k gawk x86_64 5.1.1-4.fc37 fedora 1.0 M glibc-minimal-langpack x86_64 2.36-17.fc37 updates 76 k grep x86_64 3.7-4.fc37 fedora 273 k gzip x86_64 1.12-2.fc37 fedora 166 k info x86_64 6.8-4.fc37 fedora 225 k patch x86_64 2.7.6-17.fc37 fedora 124 k redhat-rpm-config noarch 230-1.fc37 updates 78 k rpm-build x86_64 4.18.1-2.fc37 updates 75 k sed x86_64 4.8-11.fc37 fedora 306 k shadow-utils x86_64 2:4.12.3-6.fc37 updates 1.3 M tar x86_64 2:1.34-6.fc37 updates 885 k unzip x86_64 6.0-58.fc37 fedora 182 k util-linux x86_64 2.38.1-1.fc37 fedora 2.3 M which x86_64 2.21-39.fc37 updates 42 k xz x86_64 5.4.1-1.fc37 updates 419 k Installing dependencies: alternatives x86_64 1.24-1.fc37 updates 39 k ansible-srpm-macros noarch 1-10.fc37 updates 20 k audit-libs x86_64 3.1.2-1.fc37 updates 117 k authselect x86_64 1.4.2-1.fc37 updates 144 k authselect-libs x86_64 1.4.2-1.fc37 updates 250 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils x86_64 2.38-27.fc37 updates 5.4 M binutils-gold x86_64 2.38-27.fc37 updates 773 k bzip2-libs x86_64 1.0.8-12.fc37 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-1.0.fc37 updates 837 k coreutils-common x86_64 9.1-8.fc37 updates 2.0 M cracklib x86_64 2.9.7-30.fc37 fedora 92 k crypto-policies noarch 20220815-1.gite4ed860.fc37 fedora 86 k curl x86_64 7.85.0-12.fc37 updates 314 k cyrus-sasl-lib x86_64 2.1.28-8.fc37 fedora 792 k debugedit x86_64 5.0-7.fc37 updates 77 k dwz x86_64 0.14-7.fc37 fedora 129 k ed x86_64 1.18-2.fc37 fedora 78 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils x86_64 0.189-3.fc37 updates 536 k elfutils-debuginfod-client x86_64 0.189-3.fc37 updates 38 k elfutils-default-yama-scope noarch 0.189-3.fc37 updates 13 k elfutils-libelf x86_64 0.189-3.fc37 updates 194 k elfutils-libs x86_64 0.189-3.fc37 updates 258 k fedora-gpg-keys noarch 37-2 updates 126 k fedora-release noarch 37-18 updates 8.7 k fedora-release-identity-basic noarch 37-18 updates 9.4 k fedora-repos noarch 37-2 updates 9.4 k file x86_64 5.42-4.fc37 fedora 49 k file-libs x86_64 5.42-4.fc37 fedora 676 k filesystem x86_64 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-9.fc37 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal x86_64 13.2-3.fc37 updates 4.2 M gdbm-libs x86_64 1:1.23-2.fc37 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc37 updates 8.0 k glibc x86_64 2.36-17.fc37 updates 2.2 M glibc-common x86_64 2.36-17.fc37 updates 357 k glibc-gconv-extra x86_64 2.36-17.fc37 updates 1.7 M gmp x86_64 1:6.2.1-3.fc37 fedora 315 k gnat-srpm-macros noarch 5-1.fc37 updates 8.3 k go-srpm-macros noarch 3.2.0-1.fc37 fedora 27 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs x86_64 1.6.1-5.fc37 fedora 31 k krb5-libs x86_64 1.19.2-13.fc37 updates 726 k libacl x86_64 2.3.1-4.fc37 fedora 23 k libarchive x86_64 3.6.1-3.fc37 updates 397 k libattr x86_64 2.5.1-5.fc37 fedora 18 k libblkid x86_64 2.38.1-1.fc37 fedora 107 k libbrotli x86_64 1.0.9-9.fc37 fedora 315 k libcap x86_64 2.48-5.fc37 fedora 67 k libcap-ng x86_64 0.8.3-3.fc37 fedora 33 k libcom_err x86_64 1.46.5-3.fc37 fedora 25 k libcurl x86_64 7.85.0-12.fc37 updates 302 k libdb x86_64 5.3.28-53.fc37 fedora 760 k libeconf x86_64 0.5.2-1.fc37 updates 30 k libevent x86_64 2.1.12-7.fc37 fedora 261 k libfdisk x86_64 2.38.1-1.fc37 fedora 160 k libffi x86_64 3.4.4-1.fc37 updates 37 k libgcc x86_64 12.3.1-1.fc37 updates 113 k libgomp x86_64 12.3.1-1.fc37 updates 301 k libidn2 x86_64 2.3.4-1.fc37 updates 160 k libmount x86_64 2.38.1-1.fc37 fedora 135 k libnghttp2 x86_64 1.51.0-2.fc37 updates 74 k libnsl2 x86_64 2.0.0-4.fc37 fedora 30 k libpkgconf x86_64 1.8.0-3.fc37 fedora 36 k libpsl x86_64 0.21.1-6.fc37 fedora 63 k libpwquality x86_64 1.4.5-3.fc37 updates 119 k libselinux x86_64 3.5-1.fc37 updates 86 k libsemanage x86_64 3.5-2.fc37 updates 120 k libsepol x86_64 3.5-1.fc37 updates 322 k libsigsegv x86_64 2.14-3.fc37 fedora 27 k libsmartcols x86_64 2.38.1-1.fc37 fedora 64 k libssh x86_64 0.10.5-1.fc37 updates 211 k libssh-config noarch 0.10.5-1.fc37 updates 8.6 k libstdc++ x86_64 12.3.1-1.fc37 updates 810 k libtasn1 x86_64 4.19.0-1.fc37 updates 75 k libtirpc x86_64 1.3.3-1.rc1.fc37 updates 93 k libunistring x86_64 1.0-2.fc37 fedora 549 k libutempter x86_64 1.2.1-7.fc37 fedora 26 k libuuid x86_64 2.38.1-1.fc37 fedora 28 k libverto x86_64 0.3.2-4.fc37 fedora 21 k libxcrypt x86_64 4.4.36-1.fc37 updates 119 k libxml2 x86_64 2.10.4-1.fc37 updates 705 k libzstd x86_64 1.5.5-1.fc37 updates 304 k lua-libs x86_64 5.4.4-9.fc37 updates 132 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs x86_64 1.9.4-1.fc37 updates 67 k mpfr x86_64 4.1.0-10.fc37 fedora 331 k ncurses-base noarch 6.4-3.20230114.fc37 updates 86 k ncurses-libs x86_64 6.4-3.20230114.fc37 updates 329 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap x86_64 2.6.6-1.fc37 updates 253 k openssl-libs x86_64 1:3.0.9-1.fc37 updates 2.1 M p11-kit x86_64 0.25.2-1.fc37 updates 530 k p11-kit-trust x86_64 0.25.2-1.fc37 updates 143 k package-notes-srpm-macros noarch 0.5-7.fc37 updates 11 k pam x86_64 1.5.2-14.fc37 fedora 560 k pam-libs x86_64 1.5.2-14.fc37 fedora 58 k pcre x86_64 8.45-1.fc37.2 fedora 202 k pcre2 x86_64 10.40-1.fc37.1 fedora 236 k pcre2-syntax noarch 10.40-1.fc37.1 fedora 142 k perl-srpm-macros noarch 1-46.fc37 fedora 8.3 k pkgconf x86_64 1.8.0-3.fc37 fedora 41 k pkgconf-m4 noarch 1.8.0-3.fc37 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-3.fc37 fedora 10 k popt x86_64 1.19-1.fc37 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc37 updates 57 k pyproject-srpm-macros noarch 1.10.0-1.fc37 updates 14 k python-srpm-macros noarch 3.11-6.fc37 updates 24 k qt5-srpm-macros noarch 5.15.10-1.fc37 updates 8.2 k qt6-srpm-macros noarch 6.5.1-2.fc37 updates 8.8 k readline x86_64 8.2-2.fc37 updates 211 k rpm x86_64 4.18.1-2.fc37 updates 570 k rpm-build-libs x86_64 4.18.1-2.fc37 updates 92 k rpm-libs x86_64 4.18.1-2.fc37 updates 318 k rpmautospec-rpm-macros noarch 0.3.5-1.fc37 updates 9.3 k rust-srpm-macros noarch 25.2-2.fc37 updates 12 k setup noarch 2.14.1-2.fc37 fedora 149 k sqlite-libs x86_64 3.40.0-1.fc37 updates 661 k systemd-libs x86_64 251.14-2.fc37 updates 618 k tzdata noarch 2023c-1.fc37 updates 718 k util-linux-core x86_64 2.38.1-1.fc37 fedora 470 k xxhash-libs x86_64 0.8.2-1.fc37 updates 39 k xz-libs x86_64 5.4.1-1.fc37 updates 109 k zip x86_64 3.0-33.fc37 fedora 259 k zlib x86_64 1.2.12-5.fc37 fedora 94 k zstd x86_64 1.5.5-1.fc37 updates 476 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 180 M Downloading Packages: [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc37.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc37.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc37.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20220815-1.gite4ed860.fc37.noarch.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc37.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.14-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] file-5.42-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-9.fc37.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc37.noarch.rpm: Already downloaded [SKIPPED] grep-3.7-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] info-6.8-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-53.fc37.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc37.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc37.x86_64.rpm: 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pcre2-10.40-1.fc37.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc37.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-46.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc37.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc37.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] sed-4.8-11.fc37.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.1-2.fc37.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc37.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-33.fc37.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.12-5.fc37.x86_64.rpm: Already downloaded [SKIPPED] alternatives-1.24-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-10.fc37.noarch.rpm: 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systemd-libs-251.14-2.fc37.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-6.fc37.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-1.fc37.noarch.rpm: Already downloaded [SKIPPED] which-2.21-39.fc37.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.2-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.1-1.fc37.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-1.fc37.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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findutils-1:4.9.0-2.fc37.x86_64 15/152 Verifying : fonts-srpm-macros-1:2.0.5-9.fc37.noarch 16/152 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 17/152 Verifying : gawk-5.1.1-4.fc37.x86_64 18/152 Verifying : gdbm-libs-1:1.23-2.fc37.x86_64 19/152 Verifying : gmp-1:6.2.1-3.fc37.x86_64 20/152 Verifying : go-srpm-macros-3.2.0-1.fc37.noarch 21/152 Verifying : grep-3.7-4.fc37.x86_64 22/152 Verifying : gzip-1.12-2.fc37.x86_64 23/152 Verifying : info-6.8-4.fc37.x86_64 24/152 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 25/152 Verifying : keyutils-libs-1.6.1-5.fc37.x86_64 26/152 Verifying : libacl-2.3.1-4.fc37.x86_64 27/152 Verifying : libattr-2.5.1-5.fc37.x86_64 28/152 Verifying : libblkid-2.38.1-1.fc37.x86_64 29/152 Verifying : libbrotli-1.0.9-9.fc37.x86_64 30/152 Verifying : libcap-2.48-5.fc37.x86_64 31/152 Verifying : libcap-ng-0.8.3-3.fc37.x86_64 32/152 Verifying : libcom_err-1.46.5-3.fc37.x86_64 33/152 Verifying : libdb-5.3.28-53.fc37.x86_64 34/152 Verifying : libevent-2.1.12-7.fc37.x86_64 35/152 Verifying : libfdisk-2.38.1-1.fc37.x86_64 36/152 Verifying : libmount-2.38.1-1.fc37.x86_64 37/152 Verifying : libnsl2-2.0.0-4.fc37.x86_64 38/152 Verifying : libpkgconf-1.8.0-3.fc37.x86_64 39/152 Verifying : libpsl-0.21.1-6.fc37.x86_64 40/152 Verifying : libsigsegv-2.14-3.fc37.x86_64 41/152 Verifying : libsmartcols-2.38.1-1.fc37.x86_64 42/152 Verifying : libunistring-1.0-2.fc37.x86_64 43/152 Verifying : libutempter-1.2.1-7.fc37.x86_64 44/152 Verifying : libuuid-2.38.1-1.fc37.x86_64 45/152 Verifying : libverto-0.3.2-4.fc37.x86_64 46/152 Verifying : lua-srpm-macros-1-7.fc37.noarch 47/152 Verifying : mpfr-4.1.0-10.fc37.x86_64 48/152 Verifying : nim-srpm-macros-3-7.fc37.noarch 49/152 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 50/152 Verifying : openblas-srpm-macros-2-12.fc37.noarch 51/152 Verifying : pam-1.5.2-14.fc37.x86_64 52/152 Verifying : pam-libs-1.5.2-14.fc37.x86_64 53/152 Verifying : patch-2.7.6-17.fc37.x86_64 54/152 Verifying : pcre-8.45-1.fc37.2.x86_64 55/152 Verifying : pcre2-10.40-1.fc37.1.x86_64 56/152 Verifying : pcre2-syntax-10.40-1.fc37.1.noarch 57/152 Verifying : perl-srpm-macros-1-46.fc37.noarch 58/152 Verifying : pkgconf-1.8.0-3.fc37.x86_64 59/152 Verifying : pkgconf-m4-1.8.0-3.fc37.noarch 60/152 Verifying : pkgconf-pkg-config-1.8.0-3.fc37.x86_64 61/152 Verifying : popt-1.19-1.fc37.x86_64 62/152 Verifying : sed-4.8-11.fc37.x86_64 63/152 Verifying : setup-2.14.1-2.fc37.noarch 64/152 Verifying : unzip-6.0-58.fc37.x86_64 65/152 Verifying : util-linux-2.38.1-1.fc37.x86_64 66/152 Verifying : util-linux-core-2.38.1-1.fc37.x86_64 67/152 Verifying : zip-3.0-33.fc37.x86_64 68/152 Verifying : zlib-1.2.12-5.fc37.x86_64 69/152 Verifying : alternatives-1.24-1.fc37.x86_64 70/152 Verifying : ansible-srpm-macros-1-10.fc37.noarch 71/152 Verifying : audit-libs-3.1.2-1.fc37.x86_64 72/152 Verifying : authselect-1.4.2-1.fc37.x86_64 73/152 Verifying : authselect-libs-1.4.2-1.fc37.x86_64 74/152 Verifying : bash-5.2.15-1.fc37.x86_64 75/152 Verifying : binutils-2.38-27.fc37.x86_64 76/152 Verifying : binutils-gold-2.38-27.fc37.x86_64 77/152 Verifying : ca-certificates-2023.2.60_v7.0.306-1.0.fc37.noar 78/152 Verifying : coreutils-9.1-8.fc37.x86_64 79/152 Verifying : coreutils-common-9.1-8.fc37.x86_64 80/152 Verifying : curl-7.85.0-12.fc37.x86_64 81/152 Verifying : debugedit-5.0-7.fc37.x86_64 82/152 Verifying : elfutils-0.189-3.fc37.x86_64 83/152 Verifying : elfutils-debuginfod-client-0.189-3.fc37.x86_64 84/152 Verifying : elfutils-default-yama-scope-0.189-3.fc37.noarch 85/152 Verifying : elfutils-libelf-0.189-3.fc37.x86_64 86/152 Verifying : elfutils-libs-0.189-3.fc37.x86_64 87/152 Verifying : fedora-gpg-keys-37-2.noarch 88/152 Verifying : fedora-release-37-18.noarch 89/152 Verifying : fedora-release-common-37-18.noarch 90/152 Verifying : fedora-release-identity-basic-37-18.noarch 91/152 Verifying : fedora-repos-37-2.noarch 92/152 Verifying : gdb-minimal-13.2-3.fc37.x86_64 93/152 Verifying : ghc-srpm-macros-1.6.1-1.fc37.noarch 94/152 Verifying : glibc-2.36-17.fc37.x86_64 95/152 Verifying : glibc-common-2.36-17.fc37.x86_64 96/152 Verifying : glibc-gconv-extra-2.36-17.fc37.x86_64 97/152 Verifying : glibc-minimal-langpack-2.36-17.fc37.x86_64 98/152 Verifying : gnat-srpm-macros-5-1.fc37.noarch 99/152 Verifying : krb5-libs-1.19.2-13.fc37.x86_64 100/152 Verifying : libarchive-3.6.1-3.fc37.x86_64 101/152 Verifying : libcurl-7.85.0-12.fc37.x86_64 102/152 Verifying : libeconf-0.5.2-1.fc37.x86_64 103/152 Verifying : libffi-3.4.4-1.fc37.x86_64 104/152 Verifying : libgcc-12.3.1-1.fc37.x86_64 105/152 Verifying : libgomp-12.3.1-1.fc37.x86_64 106/152 Verifying : libidn2-2.3.4-1.fc37.x86_64 107/152 Verifying : libnghttp2-1.51.0-2.fc37.x86_64 108/152 Verifying : libpwquality-1.4.5-3.fc37.x86_64 109/152 Verifying : libselinux-3.5-1.fc37.x86_64 110/152 Verifying : libsemanage-3.5-2.fc37.x86_64 111/152 Verifying : libsepol-3.5-1.fc37.x86_64 112/152 Verifying : libssh-0.10.5-1.fc37.x86_64 113/152 Verifying : libssh-config-0.10.5-1.fc37.noarch 114/152 Verifying : libstdc++-12.3.1-1.fc37.x86_64 115/152 Verifying : libtasn1-4.19.0-1.fc37.x86_64 116/152 Verifying : libtirpc-1.3.3-1.rc1.fc37.x86_64 117/152 Verifying : libxcrypt-4.4.36-1.fc37.x86_64 118/152 Verifying : libxml2-2.10.4-1.fc37.x86_64 119/152 Verifying : libzstd-1.5.5-1.fc37.x86_64 120/152 Verifying : lua-libs-5.4.4-9.fc37.x86_64 121/152 Verifying : lz4-libs-1.9.4-1.fc37.x86_64 122/152 Verifying : ncurses-base-6.4-3.20230114.fc37.noarch 123/152 Verifying : ncurses-libs-6.4-3.20230114.fc37.x86_64 124/152 Verifying : openldap-2.6.6-1.fc37.x86_64 125/152 Verifying : openssl-libs-1:3.0.9-1.fc37.x86_64 126/152 Verifying : p11-kit-0.25.2-1.fc37.x86_64 127/152 Verifying : p11-kit-trust-0.25.2-1.fc37.x86_64 128/152 Verifying : package-notes-srpm-macros-0.5-7.fc37.noarch 129/152 Verifying : publicsuffix-list-dafsa-20230812-1.fc37.noarch 130/152 Verifying : pyproject-srpm-macros-1.10.0-1.fc37.noarch 131/152 Verifying : python-srpm-macros-3.11-6.fc37.noarch 132/152 Verifying : qt5-srpm-macros-5.15.10-1.fc37.noarch 133/152 Verifying : qt6-srpm-macros-6.5.1-2.fc37.noarch 134/152 Verifying : readline-8.2-2.fc37.x86_64 135/152 Verifying : redhat-rpm-config-230-1.fc37.noarch 136/152 Verifying : rpm-4.18.1-2.fc37.x86_64 137/152 Verifying : rpm-build-4.18.1-2.fc37.x86_64 138/152 Verifying : rpm-build-libs-4.18.1-2.fc37.x86_64 139/152 Verifying : rpm-libs-4.18.1-2.fc37.x86_64 140/152 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc37.noarch 141/152 Verifying : rust-srpm-macros-25.2-2.fc37.noarch 142/152 Verifying : shadow-utils-2:4.12.3-6.fc37.x86_64 143/152 Verifying : sqlite-libs-3.40.0-1.fc37.x86_64 144/152 Verifying : systemd-libs-251.14-2.fc37.x86_64 145/152 Verifying : tar-2:1.34-6.fc37.x86_64 146/152 Verifying : tzdata-2023c-1.fc37.noarch 147/152 Verifying : which-2.21-39.fc37.x86_64 148/152 Verifying : xxhash-libs-0.8.2-1.fc37.x86_64 149/152 Verifying : xz-5.4.1-1.fc37.x86_64 150/152 Verifying : xz-libs-5.4.1-1.fc37.x86_64 151/152 Verifying : zstd-1.5.5-1.fc37.x86_64 152/152 Installed products updated. Installed: alternatives-1.24-1.fc37.x86_64 ansible-srpm-macros-1-10.fc37.noarch audit-libs-3.1.2-1.fc37.x86_64 authselect-1.4.2-1.fc37.x86_64 authselect-libs-1.4.2-1.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc37.x86_64 binutils-2.38-27.fc37.x86_64 binutils-gold-2.38-27.fc37.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc37.noarch coreutils-9.1-8.fc37.x86_64 coreutils-common-9.1-8.fc37.x86_64 cpio-2.13-13.fc37.x86_64 cracklib-2.9.7-30.fc37.x86_64 crypto-policies-20220815-1.gite4ed860.fc37.noarch curl-7.85.0-12.fc37.x86_64 cyrus-sasl-lib-2.1.28-8.fc37.x86_64 debugedit-5.0-7.fc37.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.14-7.fc37.x86_64 ed-1.18-2.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.189-3.fc37.x86_64 elfutils-debuginfod-client-0.189-3.fc37.x86_64 elfutils-default-yama-scope-0.189-3.fc37.noarch elfutils-libelf-0.189-3.fc37.x86_64 elfutils-libs-0.189-3.fc37.x86_64 fedora-gpg-keys-37-2.noarch fedora-release-37-18.noarch fedora-release-common-37-18.noarch fedora-release-identity-basic-37-18.noarch fedora-repos-37-2.noarch file-5.42-4.fc37.x86_64 file-libs-5.42-4.fc37.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-1:4.9.0-2.fc37.x86_64 fonts-srpm-macros-1:2.0.5-9.fc37.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-13.2-3.fc37.x86_64 gdbm-libs-1:1.23-2.fc37.x86_64 ghc-srpm-macros-1.6.1-1.fc37.noarch glibc-2.36-17.fc37.x86_64 glibc-common-2.36-17.fc37.x86_64 glibc-gconv-extra-2.36-17.fc37.x86_64 glibc-minimal-langpack-2.36-17.fc37.x86_64 gmp-1:6.2.1-3.fc37.x86_64 gnat-srpm-macros-5-1.fc37.noarch go-srpm-macros-3.2.0-1.fc37.noarch grep-3.7-4.fc37.x86_64 gzip-1.12-2.fc37.x86_64 info-6.8-4.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-13.fc37.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-1.fc37.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.85.0-12.fc37.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.5.2-1.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 libfdisk-2.38.1-1.fc37.x86_64 libffi-3.4.4-1.fc37.x86_64 libgcc-12.3.1-1.fc37.x86_64 libgomp-12.3.1-1.fc37.x86_64 libidn2-2.3.4-1.fc37.x86_64 libmount-2.38.1-1.fc37.x86_64 libnghttp2-1.51.0-2.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 libpwquality-1.4.5-3.fc37.x86_64 libselinux-3.5-1.fc37.x86_64 libsemanage-3.5-2.fc37.x86_64 libsepol-3.5-1.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-1.fc37.x86_64 libssh-0.10.5-1.fc37.x86_64 libssh-config-0.10.5-1.fc37.noarch libstdc++-12.3.1-1.fc37.x86_64 libtasn1-4.19.0-1.fc37.x86_64 libtirpc-1.3.3-1.rc1.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-1.fc37.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.36-1.fc37.x86_64 libxml2-2.10.4-1.fc37.x86_64 libzstd-1.5.5-1.fc37.x86_64 lua-libs-5.4.4-9.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.4-1.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.4-3.20230114.fc37.noarch ncurses-libs-6.4-3.20230114.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.6-1.fc37.x86_64 openssl-libs-1:3.0.9-1.fc37.x86_64 p11-kit-0.25.2-1.fc37.x86_64 p11-kit-trust-0.25.2-1.fc37.x86_64 package-notes-srpm-macros-0.5-7.fc37.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19-1.fc37.x86_64 publicsuffix-list-dafsa-20230812-1.fc37.noarch pyproject-srpm-macros-1.10.0-1.fc37.noarch python-srpm-macros-3.11-6.fc37.noarch qt5-srpm-macros-5.15.10-1.fc37.noarch qt6-srpm-macros-6.5.1-2.fc37.noarch readline-8.2-2.fc37.x86_64 redhat-rpm-config-230-1.fc37.noarch rpm-4.18.1-2.fc37.x86_64 rpm-build-4.18.1-2.fc37.x86_64 rpm-build-libs-4.18.1-2.fc37.x86_64 rpm-libs-4.18.1-2.fc37.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc37.noarch rust-srpm-macros-25.2-2.fc37.noarch sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-2:4.12.3-6.fc37.x86_64 sqlite-libs-3.40.0-1.fc37.x86_64 systemd-libs-251.14-2.fc37.x86_64 tar-2:1.34-6.fc37.x86_64 tzdata-2023c-1.fc37.noarch unzip-6.0-58.fc37.x86_64 util-linux-2.38.1-1.fc37.x86_64 util-linux-core-2.38.1-1.fc37.x86_64 which-2.21-39.fc37.x86_64 xxhash-libs-0.8.2-1.fc37.x86_64 xz-5.4.1-1.fc37.x86_64 xz-libs-5.4.1-1.fc37.x86_64 zip-3.0-33.fc37.x86_64 zlib-1.2.12-5.fc37.x86_64 zstd-1.5.5-1.fc37.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.24-1.fc37.x86_64 ansible-srpm-macros-1-10.fc37.noarch audit-libs-3.1.2-1.fc37.x86_64 authselect-1.4.2-1.fc37.x86_64 authselect-libs-1.4.2-1.fc37.x86_64 basesystem-11-14.fc37.noarch bash-5.2.15-1.fc37.x86_64 binutils-2.38-27.fc37.x86_64 binutils-gold-2.38-27.fc37.x86_64 bzip2-1.0.8-12.fc37.x86_64 bzip2-libs-1.0.8-12.fc37.x86_64 ca-certificates-2023.2.60_v7.0.306-1.0.fc37.noarch coreutils-9.1-8.fc37.x86_64 coreutils-common-9.1-8.fc37.x86_64 cpio-2.13-13.fc37.x86_64 cracklib-2.9.7-30.fc37.x86_64 crypto-policies-20220815-1.gite4ed860.fc37.noarch curl-7.85.0-12.fc37.x86_64 cyrus-sasl-lib-2.1.28-8.fc37.x86_64 debugedit-5.0-7.fc37.x86_64 diffutils-3.8-3.fc37.x86_64 dwz-0.14-7.fc37.x86_64 ed-1.18-2.fc37.x86_64 efi-srpm-macros-5-6.fc37.noarch elfutils-0.189-3.fc37.x86_64 elfutils-debuginfod-client-0.189-3.fc37.x86_64 elfutils-default-yama-scope-0.189-3.fc37.noarch elfutils-libelf-0.189-3.fc37.x86_64 elfutils-libs-0.189-3.fc37.x86_64 fedora-gpg-keys-37-2.noarch fedora-release-37-18.noarch fedora-release-common-37-18.noarch fedora-release-identity-basic-37-18.noarch fedora-repos-37-2.noarch file-5.42-4.fc37.x86_64 file-libs-5.42-4.fc37.x86_64 filesystem-3.18-2.fc37.x86_64 findutils-4.9.0-2.fc37.x86_64 fonts-srpm-macros-2.0.5-9.fc37.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc37.x86_64 gdb-minimal-13.2-3.fc37.x86_64 gdbm-libs-1.23-2.fc37.x86_64 ghc-srpm-macros-1.6.1-1.fc37.noarch glibc-2.36-17.fc37.x86_64 glibc-common-2.36-17.fc37.x86_64 glibc-gconv-extra-2.36-17.fc37.x86_64 glibc-minimal-langpack-2.36-17.fc37.x86_64 gmp-6.2.1-3.fc37.x86_64 gnat-srpm-macros-5-1.fc37.noarch go-srpm-macros-3.2.0-1.fc37.noarch gpg-pubkey-5323552a-6112bcdc grep-3.7-4.fc37.x86_64 gzip-1.12-2.fc37.x86_64 info-6.8-4.fc37.x86_64 kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc37.x86_64 krb5-libs-1.19.2-13.fc37.x86_64 libacl-2.3.1-4.fc37.x86_64 libarchive-3.6.1-3.fc37.x86_64 libattr-2.5.1-5.fc37.x86_64 libblkid-2.38.1-1.fc37.x86_64 libbrotli-1.0.9-9.fc37.x86_64 libcap-2.48-5.fc37.x86_64 libcap-ng-0.8.3-3.fc37.x86_64 libcom_err-1.46.5-3.fc37.x86_64 libcurl-7.85.0-12.fc37.x86_64 libdb-5.3.28-53.fc37.x86_64 libeconf-0.5.2-1.fc37.x86_64 libevent-2.1.12-7.fc37.x86_64 libfdisk-2.38.1-1.fc37.x86_64 libffi-3.4.4-1.fc37.x86_64 libgcc-12.3.1-1.fc37.x86_64 libgomp-12.3.1-1.fc37.x86_64 libidn2-2.3.4-1.fc37.x86_64 libmount-2.38.1-1.fc37.x86_64 libnghttp2-1.51.0-2.fc37.x86_64 libnsl2-2.0.0-4.fc37.x86_64 libpkgconf-1.8.0-3.fc37.x86_64 libpsl-0.21.1-6.fc37.x86_64 libpwquality-1.4.5-3.fc37.x86_64 libselinux-3.5-1.fc37.x86_64 libsemanage-3.5-2.fc37.x86_64 libsepol-3.5-1.fc37.x86_64 libsigsegv-2.14-3.fc37.x86_64 libsmartcols-2.38.1-1.fc37.x86_64 libssh-0.10.5-1.fc37.x86_64 libssh-config-0.10.5-1.fc37.noarch libstdc++-12.3.1-1.fc37.x86_64 libtasn1-4.19.0-1.fc37.x86_64 libtirpc-1.3.3-1.rc1.fc37.x86_64 libunistring-1.0-2.fc37.x86_64 libutempter-1.2.1-7.fc37.x86_64 libuuid-2.38.1-1.fc37.x86_64 libverto-0.3.2-4.fc37.x86_64 libxcrypt-4.4.36-1.fc37.x86_64 libxml2-2.10.4-1.fc37.x86_64 libzstd-1.5.5-1.fc37.x86_64 lua-libs-5.4.4-9.fc37.x86_64 lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.4-1.fc37.x86_64 mpfr-4.1.0-10.fc37.x86_64 ncurses-base-6.4-3.20230114.fc37.noarch ncurses-libs-6.4-3.20230114.fc37.x86_64 nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.6-1.fc37.x86_64 openssl-libs-3.0.9-1.fc37.x86_64 p11-kit-0.25.2-1.fc37.x86_64 p11-kit-trust-0.25.2-1.fc37.x86_64 package-notes-srpm-macros-0.5-7.fc37.noarch pam-1.5.2-14.fc37.x86_64 pam-libs-1.5.2-14.fc37.x86_64 patch-2.7.6-17.fc37.x86_64 pcre-8.45-1.fc37.2.x86_64 pcre2-10.40-1.fc37.1.x86_64 pcre2-syntax-10.40-1.fc37.1.noarch perl-srpm-macros-1-46.fc37.noarch pkgconf-1.8.0-3.fc37.x86_64 pkgconf-m4-1.8.0-3.fc37.noarch pkgconf-pkg-config-1.8.0-3.fc37.x86_64 popt-1.19-1.fc37.x86_64 publicsuffix-list-dafsa-20230812-1.fc37.noarch pyproject-srpm-macros-1.10.0-1.fc37.noarch python-srpm-macros-3.11-6.fc37.noarch qt5-srpm-macros-5.15.10-1.fc37.noarch qt6-srpm-macros-6.5.1-2.fc37.noarch readline-8.2-2.fc37.x86_64 redhat-rpm-config-230-1.fc37.noarch rpm-4.18.1-2.fc37.x86_64 rpm-build-4.18.1-2.fc37.x86_64 rpm-build-libs-4.18.1-2.fc37.x86_64 rpm-libs-4.18.1-2.fc37.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc37.noarch rust-srpm-macros-25.2-2.fc37.noarch sed-4.8-11.fc37.x86_64 setup-2.14.1-2.fc37.noarch shadow-utils-4.12.3-6.fc37.x86_64 sqlite-libs-3.40.0-1.fc37.x86_64 systemd-libs-251.14-2.fc37.x86_64 tar-1.34-6.fc37.x86_64 tzdata-2023c-1.fc37.noarch unzip-6.0-58.fc37.x86_64 util-linux-2.38.1-1.fc37.x86_64 util-linux-core-2.38.1-1.fc37.x86_64 which-2.21-39.fc37.x86_64 xxhash-libs-0.8.2-1.fc37.x86_64 xz-5.4.1-1.fc37.x86_64 xz-libs-5.4.1-1.fc37.x86_64 zip-3.0-33.fc37.x86_64 zlib-1.2.12-5.fc37.x86_64 zstd-1.5.5-1.fc37.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.rpm.log /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.librepo.log /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-q5s5je15/R-CRAN-VAJointSurv/R-CRAN-VAJointSurv.spec) Config(child) 0 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm) Config(fedora-37-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-37-x86_64-1700321097.186716/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.18.1-3.fc38.x86_64 rpm-sequoia-1.4.0-3.fc38.x86_64 python3-dnf-4.18.1-1.fc38.noarch python3-dnf-plugins-core-4.4.3-1.fc38.noarch yum-4.18.1-1.fc38.noarch Start: build phase for R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm Start: build setup for R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 31 kB/s | 1.5 kB 00:00 Copr repository 35 MB/s | 26 MB 00:00 fedora 629 kB/s | 26 kB 00:00 updates 309 kB/s | 13 kB 00:00 Dependencies resolved. ================================================================================================= Package Arch Version Repo Size ================================================================================================= Installing: R-CRAN-Matrix x86_64 1.6.3-1.fc37.copr6636945 copr_base 4.1 M R-CRAN-Rcpp x86_64 1.0.11-1.fc37.copr6148288 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 0.12.6.6.0-1.fc37.copr6589779 copr_base 944 k R-CRAN-RcppEigen x86_64 0.3.3.9.4-1.fc37.copr6596539 copr_base 1.2 M R-CRAN-SimSurvNMarker x86_64 0.1.3-1.fc37.copr5023287 copr_base 1.4 M R-CRAN-lme4 x86_64 1.1.35.1-1.fc37.copr6664800 copr_base 4.1 M R-CRAN-psqn x86_64 0.3.1-1.fc37.copr6665194 copr_base 464 k R-CRAN-survival x86_64 3.5.7-1.fc37.copr6665187 copr_base 6.0 M R-CRAN-testthat x86_64 3.2.0-1.fc37.copr6501172 copr_base 1.7 M R-core x86_64 4.2.3-1.fc37 updates 62 M R-devel x86_64 4.2.3-1.fc37 updates 9.6 k Installing dependencies: R-CRAN-MASS x86_64 7.3.60-1.fc37.copr5874691 copr_base 1.2 M R-CRAN-R6 noarch 2.5.1-1.fc37.copr4844136 copr_base 96 k R-CRAN-boot noarch 1.3.28.1-1.fc37.copr5061122 copr_base 698 k R-CRAN-brio x86_64 1.1.3-1.fc37.copr4846679 copr_base 47 k R-CRAN-callr noarch 3.7.3-1.fc37.copr5004624 copr_base 432 k R-CRAN-cli x86_64 3.6.1-1.fc37.copr5702054 copr_base 1.3 M R-CRAN-crayon noarch 1.5.2-1.fc37.copr4879512 copr_base 182 k R-CRAN-desc noarch 1.4.2-1.fc37.copr4847405 copr_base 353 k R-CRAN-diffobj x86_64 0.3.5-1.fc37.copr4847470 copr_base 1.0 M R-CRAN-digest x86_64 0.6.33-1.fc37.copr6150922 copr_base 216 k R-CRAN-ellipsis x86_64 0.3.2-1.fc37.copr4847400 copr_base 49 k R-CRAN-evaluate noarch 0.23-1.fc37.copr6589765 copr_base 97 k R-CRAN-fansi x86_64 1.0.5-1.fc37.copr6506680 copr_base 340 k R-CRAN-fs x86_64 1.6.3-1.fc37.copr6193673 copr_base 310 k R-CRAN-glue x86_64 1.6.2-1.fc37.copr4844115 copr_base 162 k R-CRAN-jsonlite x86_64 1.8.7-1.fc37.copr6127729 copr_base 639 k R-CRAN-lattice x86_64 0.22.5-1.fc37.copr6562879 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.4-1.fc37.copr6614518 copr_base 131 k R-CRAN-magrittr x86_64 2.0.3-1.fc37.copr4844134 copr_base 221 k R-CRAN-minqa x86_64 1.2.6-1.fc37.copr6395773 copr_base 130 k R-CRAN-nlme x86_64 3.1.163-1.fc37.copr6261982 copr_base 2.4 M R-CRAN-nloptr x86_64 2.0.3-1.fc37.copr4858957 copr_base 683 k R-CRAN-pillar noarch 1.9.0-1.fc37.copr5696907 copr_base 623 k R-CRAN-pkgbuild noarch 1.4.2-1.fc37.copr6116915 copr_base 202 k R-CRAN-pkgconfig noarch 2.0.3-3.fc37.copr4844135 copr_base 30 k R-CRAN-pkgload noarch 1.3.3-1.fc37.copr6437975 copr_base 197 k R-CRAN-praise noarch 1.0.0-3.fc37.copr4844239 copr_base 28 k R-CRAN-prettyunits noarch 1.2.0-1.fc37.copr6439833 copr_base 169 k R-CRAN-processx x86_64 3.8.2-1.fc37.copr6131588 copr_base 356 k R-CRAN-ps x86_64 1.7.5-1.fc37.copr5804160 copr_base 338 k R-CRAN-rematch2 noarch 2.1.2-3.fc37.copr4853086 copr_base 58 k R-CRAN-rlang x86_64 1.1.2-1.fc37.copr6598950 copr_base 1.7 M R-CRAN-rprojroot noarch 2.0.4-1.fc37.copr6601156 copr_base 121 k R-CRAN-tibble x86_64 3.2.1-1.fc37.copr5687340 copr_base 632 k R-CRAN-utf8 x86_64 1.2.4-1.fc37.copr6555966 copr_base 150 k R-CRAN-vctrs x86_64 0.6.4-1.fc37.copr6524681 copr_base 1.3 M R-CRAN-waldo noarch 0.5.2-1.fc37.copr6596563 copr_base 116 k R-CRAN-withr noarch 2.5.2-1.fc37.copr6583488 copr_base 257 k R-core-devel x86_64 4.2.3-1.fc37 updates 92 k R-java x86_64 4.2.3-1.fc37 updates 10 k R-java-devel x86_64 4.2.3-1.fc37 updates 9.7 k R-littler x86_64 0.3.18-1.fc37 updates 76 k R-rpm-macros noarch 1.2.1-5.fc37 fedora 11 k adobe-mappings-cmap noarch 20230622-1.fc37 updates 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc37 updates 114 k adobe-mappings-pdf noarch 20190401-2.fc37 fedora 697 k alsa-lib x86_64 1.2.9-1.fc37 updates 518 k annobin-docs noarch 12.28-1.fc37 updates 91 k annobin-plugin-gcc x86_64 12.28-1.fc37 updates 957 k avahi-libs x86_64 0.8-18.fc37 updates 67 k biber noarch 2.17-5.fc37 fedora 314 k brotli x86_64 1.0.9-9.fc37 fedora 315 k brotli-devel x86_64 1.0.9-9.fc37 fedora 31 k bzip2-devel x86_64 1.0.8-12.fc37 fedora 214 k cairo x86_64 1.17.6-2.fc37 fedora 676 k cmake-filesystem x86_64 3.27.7-1.fc37 updates 19 k copy-jdk-configs noarch 4.1-1.fc37 fedora 28 k cpp x86_64 12.3.1-1.fc37 updates 11 M crypto-policies-scripts noarch 20220815-1.gite4ed860.fc37 fedora 110 k cups-libs x86_64 1:2.4.7-1.fc37 updates 268 k dbus-libs x86_64 1:1.14.10-1.fc37 updates 156 k desktop-file-utils x86_64 0.26-7.fc37 fedora 72 k emacs-filesystem noarch 1:28.3-0.rc1.fc37 updates 7.8 k expat x86_64 2.5.0-1.fc37 updates 110 k flexiblas x86_64 3.3.1-5.fc37 updates 33 k flexiblas-devel x86_64 3.3.1-5.fc37 updates 116 k flexiblas-netlib x86_64 3.3.1-5.fc37 updates 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc37 updates 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc37 updates 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc37 updates 17 k fontconfig x86_64 2.14.1-2.fc37 updates 294 k fontconfig-devel x86_64 2.14.1-2.fc37 updates 164 k fonts-filesystem noarch 1:2.0.5-9.fc37 fedora 7.9 k freetype x86_64 2.12.1-3.fc37 fedora 407 k freetype-devel x86_64 2.12.1-3.fc37 fedora 895 k fribidi x86_64 1.0.12-2.fc37 fedora 89 k gc x86_64 8.0.6-4.fc37 fedora 103 k gcc x86_64 12.3.1-1.fc37 updates 33 M gcc-c++ x86_64 12.3.1-1.fc37 updates 13 M gcc-gfortran x86_64 12.3.1-1.fc37 updates 12 M gcc-plugin-annobin x86_64 12.3.1-1.fc37 updates 59 k gettext x86_64 0.21.1-1.fc37 updates 1.0 M gettext-envsubst x86_64 0.21.1-1.fc37 updates 36 k gettext-libs x86_64 0.21.1-1.fc37 updates 319 k gettext-runtime x86_64 0.21.1-1.fc37 updates 117 k ghostscript x86_64 9.56.1-9.fc37 updates 42 k ghostscript-tools-fonts x86_64 9.56.1-9.fc37 updates 12 k ghostscript-tools-printing x86_64 9.56.1-9.fc37 updates 12 k glib2 x86_64 2.74.7-2.fc37 updates 2.7 M glib2-devel x86_64 2.74.7-2.fc37 updates 570 k glibc-devel x86_64 2.36-17.fc37 updates 90 k glibc-headers-x86 noarch 2.36-17.fc37 updates 570 k gnutls x86_64 3.8.1-1.fc37 updates 1.1 M google-droid-sans-fonts noarch 20200215-13.fc37 fedora 2.7 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-8.fc37 updates 18 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-8.fc37 updates 728 k graphite2 x86_64 1.3.14-10.fc37 fedora 95 k graphite2-devel x86_64 1.3.14-10.fc37 fedora 20 k groff-base x86_64 1.22.4-10.fc37 fedora 1.1 M guile22 x86_64 2.2.7-6.fc37 fedora 6.5 M harfbuzz x86_64 5.2.0-1.fc37 fedora 801 k harfbuzz-devel x86_64 5.2.0-1.fc37 fedora 391 k harfbuzz-icu x86_64 5.2.0-1.fc37 fedora 16 k java-17-openjdk x86_64 1:17.0.8.0.7-1.fc37 updates 440 k java-17-openjdk-devel x86_64 1:17.0.8.0.7-1.fc37 updates 4.7 M java-17-openjdk-headless x86_64 1:17.0.8.0.7-1.fc37 updates 45 M javapackages-filesystem noarch 6.1.0-4.fc37 fedora 13 k jbig2dec-libs x86_64 0.19-7.fc37 fedora 73 k jbigkit-libs x86_64 2.1-24.fc37 fedora 53 k kernel-headers x86_64 6.5.4-100.fc37 updates 1.5 M langpacks-core-font-en noarch 3.0-26.fc37 fedora 10 k lcms2 x86_64 2.14-1.fc37 updates 176 k less x86_64 633-1.fc37 updates 175 k libICE x86_64 1.0.10-9.fc37 fedora 71 k libRmath x86_64 4.2.3-1.fc37 updates 123 k libRmath-devel x86_64 4.2.3-1.fc37 updates 15 k libSM x86_64 1.2.3-11.fc37 fedora 42 k libX11 x86_64 1.8.4-1.fc37 updates 647 k libX11-common noarch 1.8.4-1.fc37 updates 177 k libX11-devel x86_64 1.8.4-1.fc37 updates 1.0 M libX11-xcb x86_64 1.8.4-1.fc37 updates 11 k libXau x86_64 1.0.10-1.fc37 fedora 31 k libXau-devel x86_64 1.0.10-1.fc37 fedora 13 k libXaw x86_64 1.0.14-3.fc37 fedora 203 k libXcomposite x86_64 0.4.5-8.fc37 fedora 23 k libXext x86_64 1.3.4-9.fc37 fedora 39 k libXft x86_64 2.3.4-3.fc37 fedora 62 k libXft-devel x86_64 2.3.4-3.fc37 fedora 18 k libXi x86_64 1.8-3.fc37 fedora 39 k libXmu x86_64 1.1.3-9.fc37 fedora 74 k libXpm x86_64 3.5.15-2.fc37 updates 62 k libXrender x86_64 0.9.10-17.fc37 fedora 27 k libXrender-devel x86_64 0.9.10-17.fc37 fedora 16 k libXt x86_64 1.2.1-3.fc37 fedora 180 k libXtst x86_64 1.2.3-17.fc37 fedora 20 k libb2 x86_64 0.98.1-7.fc37 fedora 25 k libblkid-devel x86_64 2.38.1-1.fc37 fedora 17 k libdatrie x86_64 0.2.13-4.fc37 fedora 32 k libffi-devel x86_64 3.4.4-1.fc37 updates 28 k libfontenc x86_64 1.1.4-4.fc37 fedora 31 k libgfortran x86_64 12.3.1-1.fc37 updates 904 k libgs x86_64 9.56.1-9.fc37 updates 3.6 M libicu x86_64 71.1-2.fc37 fedora 10 M libicu-devel x86_64 71.1-2.fc37 fedora 915 k libijs x86_64 0.35-16.fc37 fedora 29 k libjpeg-turbo x86_64 2.1.3-2.fc37 fedora 181 k libmount-devel x86_64 2.38.1-1.fc37 fedora 18 k libmpc x86_64 1.2.1-5.fc37 fedora 61 k libpaper x86_64 1.1.28-5.fc37 fedora 46 k libpng x86_64 2:1.6.37-13.fc37 fedora 119 k libpng-devel x86_64 2:1.6.37-13.fc37 fedora 290 k libquadmath x86_64 12.3.1-1.fc37 updates 206 k libquadmath-devel x86_64 12.3.1-1.fc37 updates 48 k libselinux-devel x86_64 3.5-1.fc37 updates 151 k libsepol-devel x86_64 3.5-1.fc37 updates 49 k libstdc++-devel x86_64 12.3.1-1.fc37 updates 2.5 M libthai x86_64 0.1.29-3.fc37 fedora 213 k libtiff x86_64 4.4.0-4.fc37 fedora 197 k libtool-ltdl x86_64 2.4.7-2.fc37 fedora 37 k libwebp x86_64 1.3.2-2.fc37 updates 284 k libxcb x86_64 1.13.1-10.fc37 fedora 231 k libxcb-devel x86_64 1.13.1-10.fc37 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc37 updates 29 k libxml2-devel x86_64 2.10.4-1.fc37 updates 531 k libxslt x86_64 1.1.38-1.fc37 updates 186 k lksctp-tools x86_64 1.0.19-2.fc37 fedora 91 k lua x86_64 5.4.4-9.fc37 updates 189 k lua-posix x86_64 35.1-4.fc37 fedora 139 k mailcap noarch 2.1.53-4.fc37 fedora 33 k make x86_64 1:4.3-11.fc37 fedora 542 k mkfontscale x86_64 1.2.2-2.fc37 fedora 32 k mpdecimal x86_64 2.5.1-4.fc37 fedora 102 k ncurses x86_64 6.4-3.20230114.fc37 updates 411 k nettle x86_64 3.8-2.fc37 fedora 414 k nspr x86_64 4.35.0-11.fc37 updates 136 k nss x86_64 3.94.0-2.fc37 updates 699 k nss-softokn x86_64 3.94.0-2.fc37 updates 395 k nss-softokn-freebl x86_64 3.94.0-2.fc37 updates 349 k 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updates 62 k texlive-uniquecounter noarch 9:svn53162-60.fc37 updates 299 k texlive-url noarch 9:svn32528.3.4-60.fc37 updates 18 k texlive-utopia noarch 9:svn15878.0-60.fc37 updates 238 k texlive-varwidth noarch 9:svn24104.0.92-60.fc37 updates 17 k texlive-wasy noarch 9:svn53533-60.fc37 updates 43 k texlive-wasy-type1 noarch 9:svn53534-60.fc37 updates 271 k texlive-wasysym noarch 9:svn54080-60.fc37 updates 17 k texlive-xcolor noarch 9:svn41044-60.fc37 updates 31 k texlive-xdvi x86_64 9:20210325-54.fc37 updates 352 k texlive-xetex x86_64 9:20210325-54.fc37 updates 1.2 M texlive-xetexconfig noarch 9:svn45845-60.fc37 updates 9.9 k texlive-xifthen noarch 9:svn38929-60.fc37 updates 15 k texlive-xkeyval noarch 9:svn57006-60.fc37 updates 26 k texlive-xltxtra noarch 9:svn56594-60.fc37 updates 16 k texlive-xpatch noarch 9:svn54563-60.fc37 updates 17 k texlive-xstring noarch 9:svn49946-60.fc37 updates 24 k texlive-xunicode noarch 9:svn30466.0.981-60.fc37 updates 43 k texlive-zapfchan noarch 9:svn31835.0-60.fc37 updates 109 k texlive-zapfding noarch 9:svn31835.0-60.fc37 updates 63 k texlive-zref noarch 9:svn56611-60.fc37 updates 670 k tk x86_64 1:8.6.12-3.fc37 fedora 1.6 M tk-devel x86_64 1:8.6.12-3.fc37 fedora 538 k tre x86_64 0.8.0-37.20140228gitc2f5d13.fc37 fedora 42 k tre-common noarch 0.8.0-37.20140228gitc2f5d13.fc37 fedora 31 k tre-devel x86_64 0.8.0-37.20140228gitc2f5d13.fc37 fedora 12 k ttmkfdir x86_64 3.0.9-66.fc37 fedora 54 k tzdata-java noarch 2023c-1.fc37 updates 208 k urw-base35-bookman-fonts noarch 20200910-15.fc37 fedora 848 k urw-base35-c059-fonts noarch 20200910-15.fc37 fedora 875 k urw-base35-d050000l-fonts noarch 20200910-15.fc37 fedora 76 k urw-base35-fonts noarch 20200910-15.fc37 fedora 11 k urw-base35-fonts-common noarch 20200910-15.fc37 fedora 21 k urw-base35-gothic-fonts noarch 20200910-15.fc37 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-15.fc37 fedora 796 k urw-base35-nimbus-roman-fonts noarch 20200910-15.fc37 fedora 857 k urw-base35-nimbus-sans-fonts noarch 20200910-15.fc37 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-15.fc37 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-15.fc37 fedora 42 k urw-base35-z003-fonts noarch 20200910-15.fc37 fedora 276 k vim-data noarch 2:9.0.2081-1.fc37 updates 23 k vim-minimal x86_64 2:9.0.2081-1.fc37 updates 799 k xdg-utils noarch 1.1.3-15.fc37 updates 77 k xml-common noarch 0.6.3-59.fc37 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-34.fc37 fedora 505 k xorg-x11-proto-devel noarch 2022.2-2.fc37 fedora 299 k xz-devel x86_64 5.4.1-1.fc37 updates 65 k zlib-devel x86_64 1.2.12-5.fc37 fedora 44 k zziplib x86_64 0.13.72-2.fc37 fedora 86 k Transaction Summary ================================================================================================= Install 754 Packages Total size: 547 M Total download size: 15 M Installed size: 1.4 G Downloading Packages: [SKIPPED] R-CRAN-MASS-7.3.60-1.fc37.copr5874691.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Matrix-1.6.3-1.fc37.copr6636945.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-R6-2.5.1-1.fc37.copr4844136.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-Rcpp-1.0.11-1.fc37.copr6148288.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-RcppEigen-0.3.3.9.4-1.fc37.copr6596539.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-boot-1.3.28.1-1.fc37.copr5061122.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-cli-3.6.1-1.fc37.copr5702054.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-ellipsis-0.3.2-1.fc37.copr4847400.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-fansi-1.0.5-1.fc37.copr6506680.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-glue-1.6.2-1.fc37.copr4844115.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.22.5-1.fc37.copr6562879.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lifecycle-1.0.4-1.fc37.copr6614518.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-lme4-1.1.35.1-1.fc37.copr6664800.x86_64.rpm: Already downloaded [SKIPPED] 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Running transaction test Transaction test succeeded. 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236/754 Verifying : perl-Specio-0.48-2.fc37.noarch 237/754 Verifying : perl-Storable-1:3.26-489.fc37.x86_64 238/754 Verifying : perl-Sub-Exporter-0.988-5.fc37.noarch 239/754 Verifying : perl-Sub-Exporter-Progressive-0.001013-19.fc37.n 240/754 Verifying : perl-Sub-Identify-0.14-20.fc37.x86_64 241/754 Verifying : perl-Sub-Install-0.928-33.fc37.noarch 242/754 Verifying : perl-Sys-Syslog-0.36-490.fc37.x86_64 243/754 Verifying : perl-Term-ANSIColor-5.01-490.fc37.noarch 244/754 Verifying : perl-Term-Cap-1.17-489.fc37.noarch 245/754 Verifying : perl-Text-Balanced-2.06-2.fc37.noarch 246/754 Verifying : perl-Text-BibTeX-0.88-12.fc37.x86_64 247/754 Verifying : perl-Text-CSV-2.02-1.fc37.noarch 248/754 Verifying : perl-Text-Glob-0.11-18.fc37.noarch 249/754 Verifying : perl-Text-ParseWords-3.31-489.fc37.noarch 250/754 Verifying : perl-Text-Roman-3.5-23.fc37.noarch 251/754 Verifying : perl-Text-Soundex-3.05-23.fc37.x86_64 252/754 Verifying : perl-Text-Unidecode-1.30-19.fc37.noarch 253/754 Verifying : perl-Tie-Cycle-1.227-4.fc37.noarch 254/754 Verifying : perl-Tie-RefHash-1.40-489.fc37.noarch 255/754 Verifying : perl-Time-HiRes-4:1.9770-489.fc37.x86_64 256/754 Verifying : perl-Time-Local-2:1.300-489.fc37.noarch 257/754 Verifying : perl-TimeDate-1:2.33-9.fc37.noarch 258/754 Verifying : perl-Try-Tiny-0.31-4.fc37.noarch 259/754 Verifying : perl-Unicode-Collate-1.31-489.fc37.x86_64 260/754 Verifying : perl-Unicode-EastAsianWidth-12.0-9.fc37.noarch 261/754 Verifying : perl-Unicode-LineBreak-2019.001-14.fc37.x86_64 262/754 Verifying : perl-Unicode-Normalize-1.31-489.fc37.x86_64 263/754 Verifying : perl-Variable-Magic-0.63-1.fc37.x86_64 264/754 Verifying : perl-WWW-RobotRules-6.02-33.fc37.noarch 265/754 Verifying : perl-XML-LibXML-1:2.0208-1.fc37.x86_64 266/754 Verifying : perl-XML-LibXML-Simple-1.01-10.fc37.noarch 267/754 Verifying : perl-XML-LibXSLT-2.002.000-3.fc37.x86_64 268/754 Verifying : perl-XML-NamespaceSupport-1.12-18.fc37.noarch 269/754 Verifying : perl-XML-Parser-2.46-12.fc37.x86_64 270/754 Verifying : perl-XML-SAX-1.02-11.fc37.noarch 271/754 Verifying : perl-XML-SAX-Base-1.09-18.fc37.noarch 272/754 Verifying : perl-XML-Writer-0.900-8.fc37.noarch 273/754 Verifying : perl-XML-XPath-1.48-2.fc37.noarch 274/754 Verifying : perl-XString-0.005-7.fc37.x86_64 275/754 Verifying : perl-autodie-2.34-490.fc37.noarch 276/754 Verifying : perl-autovivification-0.18-17.fc37.x86_64 277/754 Verifying : perl-constant-1.33-490.fc37.noarch 278/754 Verifying : perl-encoding-4:3.00-492.fc37.x86_64 279/754 Verifying : perl-libintl-perl-1.32-7.fc37.x86_64 280/754 Verifying : perl-libnet-3.14-490.fc37.noarch 281/754 Verifying : perl-namespace-autoclean-0.29-13.fc37.noarch 282/754 Verifying : perl-namespace-clean-0.27-21.fc37.noarch 283/754 Verifying : perl-parent-1:0.238-489.fc37.noarch 284/754 Verifying : perl-podlators-1:4.14-489.fc37.noarch 285/754 Verifying : perl-version-8:0.99.29-490.fc37.x86_64 286/754 Verifying : perltidy-20220613-2.fc37.noarch 287/754 Verifying : pixman-0.40.0-6.fc37.x86_64 288/754 Verifying : poppler-data-0.4.11-3.fc37.noarch 289/754 Verifying : sombok-2.4.0-17.fc37.x86_64 290/754 Verifying : sysprof-capture-devel-3.46.0-1.fc37.x86_64 291/754 Verifying : tcl-1:8.6.12-3.fc37.x86_64 292/754 Verifying : tcl-devel-1:8.6.12-3.fc37.x86_64 293/754 Verifying : texinfo-6.8-4.fc37.x86_64 294/754 Verifying : texinfo-tex-6.8-4.fc37.x86_64 295/754 Verifying : tk-1:8.6.12-3.fc37.x86_64 296/754 Verifying : tk-devel-1:8.6.12-3.fc37.x86_64 297/754 Verifying : tre-0.8.0-37.20140228gitc2f5d13.fc37.x86_64 298/754 Verifying : tre-common-0.8.0-37.20140228gitc2f5d13.fc37.noar 299/754 Verifying : tre-devel-0.8.0-37.20140228gitc2f5d13.fc37.x86_6 300/754 Verifying : ttmkfdir-3.0.9-66.fc37.x86_64 301/754 Verifying : urw-base35-bookman-fonts-20200910-15.fc37.noarch 302/754 Verifying : urw-base35-c059-fonts-20200910-15.fc37.noarch 303/754 Verifying : urw-base35-d050000l-fonts-20200910-15.fc37.noarc 304/754 Verifying : urw-base35-fonts-20200910-15.fc37.noarch 305/754 Verifying : urw-base35-fonts-common-20200910-15.fc37.noarch 306/754 Verifying : urw-base35-gothic-fonts-20200910-15.fc37.noarch 307/754 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-15.fc37 308/754 Verifying : urw-base35-nimbus-roman-fonts-20200910-15.fc37.n 309/754 Verifying : urw-base35-nimbus-sans-fonts-20200910-15.fc37.no 310/754 Verifying : urw-base35-p052-fonts-20200910-15.fc37.noarch 311/754 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-15 312/754 Verifying : urw-base35-z003-fonts-20200910-15.fc37.noarch 313/754 Verifying : xml-common-0.6.3-59.fc37.noarch 314/754 Verifying : xorg-x11-fonts-Type1-7.5-34.fc37.noarch 315/754 Verifying : xorg-x11-proto-devel-2022.2-2.fc37.noarch 316/754 Verifying : zlib-devel-1.2.12-5.fc37.x86_64 317/754 Verifying : zziplib-0.13.72-2.fc37.x86_64 318/754 Verifying : R-core-4.2.3-1.fc37.x86_64 319/754 Verifying : R-core-devel-4.2.3-1.fc37.x86_64 320/754 Verifying : R-devel-4.2.3-1.fc37.x86_64 321/754 Verifying : R-java-4.2.3-1.fc37.x86_64 322/754 Verifying : R-java-devel-4.2.3-1.fc37.x86_64 323/754 Verifying : R-littler-0.3.18-1.fc37.x86_64 324/754 Verifying : adobe-mappings-cmap-20230622-1.fc37.noarch 325/754 Verifying : adobe-mappings-cmap-deprecated-20230622-1.fc37.n 326/754 Verifying : alsa-lib-1.2.9-1.fc37.x86_64 327/754 Verifying : annobin-docs-12.28-1.fc37.noarch 328/754 Verifying : annobin-plugin-gcc-12.28-1.fc37.x86_64 329/754 Verifying : avahi-libs-0.8-18.fc37.x86_64 330/754 Verifying : cmake-filesystem-3.27.7-1.fc37.x86_64 331/754 Verifying : cpp-12.3.1-1.fc37.x86_64 332/754 Verifying : cups-libs-1:2.4.7-1.fc37.x86_64 333/754 Verifying : dbus-libs-1:1.14.10-1.fc37.x86_64 334/754 Verifying : emacs-filesystem-1:28.3-0.rc1.fc37.noarch 335/754 Verifying : expat-2.5.0-1.fc37.x86_64 336/754 Verifying : flexiblas-3.3.1-5.fc37.x86_64 337/754 Verifying : flexiblas-devel-3.3.1-5.fc37.x86_64 338/754 Verifying : flexiblas-netlib-3.3.1-5.fc37.x86_64 339/754 Verifying : flexiblas-netlib64-3.3.1-5.fc37.x86_64 340/754 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc37.x86_64 341/754 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc37.x86_64 342/754 Verifying : fontconfig-2.14.1-2.fc37.x86_64 343/754 Verifying : fontconfig-devel-2.14.1-2.fc37.x86_64 344/754 Verifying : gcc-12.3.1-1.fc37.x86_64 345/754 Verifying : gcc-c++-12.3.1-1.fc37.x86_64 346/754 Verifying : gcc-gfortran-12.3.1-1.fc37.x86_64 347/754 Verifying : gcc-plugin-annobin-12.3.1-1.fc37.x86_64 348/754 Verifying : gettext-0.21.1-1.fc37.x86_64 349/754 Verifying : gettext-envsubst-0.21.1-1.fc37.x86_64 350/754 Verifying : gettext-libs-0.21.1-1.fc37.x86_64 351/754 Verifying : gettext-runtime-0.21.1-1.fc37.x86_64 352/754 Verifying : ghostscript-9.56.1-9.fc37.x86_64 353/754 Verifying : ghostscript-tools-fonts-9.56.1-9.fc37.x86_64 354/754 Verifying : ghostscript-tools-printing-9.56.1-9.fc37.x86_64 355/754 Verifying : glib2-2.74.7-2.fc37.x86_64 356/754 Verifying : glib2-devel-2.74.7-2.fc37.x86_64 357/754 Verifying : glibc-devel-2.36-17.fc37.x86_64 358/754 Verifying : glibc-headers-x86-2.36-17.fc37.noarch 359/754 Verifying : gnutls-3.8.1-1.fc37.x86_64 360/754 Verifying : google-noto-fonts-common-20201206^1.git0c78c8329 361/754 Verifying : google-noto-sans-vf-fonts-20201206^1.git0c78c832 362/754 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc37.x86_64 363/754 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc37.x86_64 364/754 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc37.x86 365/754 Verifying : kernel-headers-6.5.4-100.fc37.x86_64 366/754 Verifying : lcms2-2.14-1.fc37.x86_64 367/754 Verifying : less-633-1.fc37.x86_64 368/754 Verifying : libRmath-4.2.3-1.fc37.x86_64 369/754 Verifying : libRmath-devel-4.2.3-1.fc37.x86_64 370/754 Verifying : libX11-1.8.4-1.fc37.x86_64 371/754 Verifying : libX11-common-1.8.4-1.fc37.noarch 372/754 Verifying : libX11-devel-1.8.4-1.fc37.x86_64 373/754 Verifying : libX11-xcb-1.8.4-1.fc37.x86_64 374/754 Verifying : libXpm-3.5.15-2.fc37.x86_64 375/754 Verifying : libffi-devel-3.4.4-1.fc37.x86_64 376/754 Verifying : libgfortran-12.3.1-1.fc37.x86_64 377/754 Verifying : libgs-9.56.1-9.fc37.x86_64 378/754 Verifying : libquadmath-12.3.1-1.fc37.x86_64 379/754 Verifying : libquadmath-devel-12.3.1-1.fc37.x86_64 380/754 Verifying : libselinux-devel-3.5-1.fc37.x86_64 381/754 Verifying : libsepol-devel-3.5-1.fc37.x86_64 382/754 Verifying : libstdc++-devel-12.3.1-1.fc37.x86_64 383/754 Verifying : libwebp-1.3.2-2.fc37.x86_64 384/754 Verifying : libxcrypt-devel-4.4.36-1.fc37.x86_64 385/754 Verifying : libxml2-devel-2.10.4-1.fc37.x86_64 386/754 Verifying : libxslt-1.1.38-1.fc37.x86_64 387/754 Verifying : lua-5.4.4-9.fc37.x86_64 388/754 Verifying : ncurses-6.4-3.20230114.fc37.x86_64 389/754 Verifying : nspr-4.35.0-11.fc37.x86_64 390/754 Verifying : nss-3.94.0-2.fc37.x86_64 391/754 Verifying : nss-softokn-3.94.0-2.fc37.x86_64 392/754 Verifying : nss-softokn-freebl-3.94.0-2.fc37.x86_64 393/754 Verifying : nss-sysinit-3.94.0-2.fc37.x86_64 394/754 Verifying : nss-util-3.94.0-2.fc37.x86_64 395/754 Verifying : openjpeg2-2.5.0-5.fc37.x86_64 396/754 Verifying : pango-1.50.14-1.fc37.x86_64 397/754 Verifying : perl-AutoLoader-5.74-494.fc37.noarch 398/754 Verifying : perl-B-1.83-494.fc37.x86_64 399/754 Verifying : perl-Class-Struct-0.66-494.fc37.noarch 400/754 Verifying : perl-Date-Manip-6.91-1.fc37.noarch 401/754 Verifying : perl-DateTime-2:1.59-1.fc37.x86_64 402/754 Verifying : perl-DateTime-Locale-1.37-1.fc37.noarch 403/754 Verifying : perl-DateTime-TimeZone-2.60-1.fc37.noarch 404/754 Verifying : perl-DynaLoader-1.52-494.fc37.x86_64 405/754 Verifying : perl-English-1.11-494.fc37.noarch 406/754 Verifying : perl-Errno-1.36-494.fc37.x86_64 407/754 Verifying : perl-ExtUtils-MM-Utils-2:7.66-1.fc37.noarch 408/754 Verifying : perl-Fcntl-1.15-494.fc37.x86_64 409/754 Verifying : perl-File-Basename-2.85-494.fc37.noarch 410/754 Verifying : perl-File-Compare-1.100.700-494.fc37.noarch 411/754 Verifying : perl-File-Copy-2.39-494.fc37.noarch 412/754 Verifying : perl-File-Find-1.40-494.fc37.noarch 413/754 Verifying : perl-File-Slurper-0.014-1.fc37.noarch 414/754 Verifying : perl-File-stat-1.12-494.fc37.noarch 415/754 Verifying : perl-FileHandle-2.03-494.fc37.noarch 416/754 Verifying : perl-FindBin-1.53-494.fc37.noarch 417/754 Verifying : perl-Getopt-Long-1:2.54-1.fc37.noarch 418/754 Verifying : perl-Getopt-Std-1.13-494.fc37.noarch 419/754 Verifying : perl-HTML-Parser-3.81-1.fc37.x86_64 420/754 Verifying : perl-HTTP-Date-6.06-1.fc37.noarch 421/754 Verifying : perl-HTTP-Tiny-0.086-1.fc37.noarch 422/754 Verifying : perl-Hash-Util-FieldHash-1.26-494.fc37.x86_64 423/754 Verifying : perl-I18N-LangTags-0.45-494.fc37.noarch 424/754 Verifying : perl-I18N-Langinfo-0.21-494.fc37.x86_64 425/754 Verifying : perl-IO-1.50-494.fc37.x86_64 426/754 Verifying : perl-IPC-Open3-1.22-494.fc37.noarch 427/754 Verifying : perl-Locale-Maketext-Simple-1:0.21-494.fc37.noar 428/754 Verifying : perl-Log-Log4perl-1.57-1.fc37.noarch 429/754 Verifying : perl-Math-Complex-1.59-494.fc37.noarch 430/754 Verifying : perl-Module-CoreList-1:5.20231025-1.fc37.noarch 431/754 Verifying : perl-Net-HTTP-6.23-1.fc37.noarch 432/754 Verifying : perl-Opcode-1.57-494.fc37.x86_64 433/754 Verifying : perl-POSIX-2.03-494.fc37.x86_64 434/754 Verifying : perl-Params-Validate-1.31-2.fc37.x86_64 435/754 Verifying : perl-Pod-Html-1.33-494.fc37.noarch 436/754 Verifying : perl-Safe-2.43-494.fc37.noarch 437/754 Verifying : perl-SelectSaver-1.02-494.fc37.noarch 438/754 Verifying : perl-Symbol-1.09-494.fc37.noarch 439/754 Verifying : perl-Sys-Hostname-1.24-494.fc37.x86_64 440/754 Verifying : perl-Text-Tabs+Wrap-2023.0511-1.fc37.noarch 441/754 Verifying : perl-Tie-4.6-494.fc37.noarch 442/754 Verifying : perl-URI-5.17-1.fc37.noarch 443/754 Verifying : perl-Unicode-UCD-0.78-494.fc37.noarch 444/754 Verifying : perl-base-2.27-494.fc37.noarch 445/754 Verifying : perl-deprecate-0.04-494.fc37.noarch 446/754 Verifying : perl-if-0.61.000-494.fc37.noarch 447/754 Verifying : perl-interpreter-4:5.36.1-494.fc37.x86_64 448/754 Verifying : perl-lib-0.65-494.fc37.x86_64 449/754 Verifying : perl-libs-4:5.36.1-494.fc37.x86_64 450/754 Verifying : perl-libwww-perl-6.68-1.fc37.noarch 451/754 Verifying : perl-locale-1.10-494.fc37.noarch 452/754 Verifying : perl-meta-notation-5.36.1-494.fc37.noarch 453/754 Verifying : perl-mro-1.26-494.fc37.x86_64 454/754 Verifying : perl-open-1.13-494.fc37.noarch 455/754 Verifying : perl-overload-1.35-494.fc37.noarch 456/754 Verifying : perl-overloading-0.02-494.fc37.noarch 457/754 Verifying : perl-sigtrap-1.10-494.fc37.noarch 458/754 Verifying : perl-subs-1.04-494.fc37.noarch 459/754 Verifying : perl-vars-1.05-494.fc37.noarch 460/754 Verifying : poppler-22.08.0-4.fc37.x86_64 461/754 Verifying : python-pip-wheel-22.2.2-3.fc37.noarch 462/754 Verifying : python-setuptools-wheel-62.6.0-3.fc37.noarch 463/754 Verifying : python3-3.11.6-1.fc37.x86_64 464/754 Verifying : python3-libs-3.11.6-1.fc37.x86_64 465/754 Verifying : qpdf-10.6.3-5.fc37.x86_64 466/754 Verifying : qpdf-libs-10.6.3-5.fc37.x86_64 467/754 Verifying : teckit-2.5.12-1.fc37.x86_64 468/754 Verifying : texlive-ae-9:svn15878.1.4-60.fc37.noarch 469/754 Verifying : texlive-algorithms-9:svn42428-60.fc37.noarch 470/754 Verifying : texlive-alphalph-9:svn53087-60.fc37.noarch 471/754 Verifying : texlive-amscls-9:svn55378-60.fc37.noarch 472/754 Verifying : texlive-amsfonts-9:svn29208.3.04-60.fc37.noarch 473/754 Verifying : texlive-amsmath-9:svn56514-60.fc37.noarch 474/754 Verifying : texlive-anysize-9:svn15878.0-60.fc37.noarch 475/754 Verifying : texlive-atbegshi-9:svn53051-60.fc37.noarch 476/754 Verifying : texlive-attachfile-9:svn42099-60.fc37.noarch 477/754 Verifying : texlive-attachfile2-9:20210325-54.fc37.noarch 478/754 Verifying : texlive-atveryend-9:svn53108-60.fc37.noarch 479/754 Verifying : 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texlive-bookmark-9:svn56885-60.fc37.noarch 496/754 Verifying : texlive-booktabs-9:svn53402-60.fc37.noarch 497/754 Verifying : texlive-breakurl-9:svn29901.1.40-60.fc37.noarch 498/754 Verifying : texlive-breqn-9:svn56422-60.fc37.noarch 499/754 Verifying : texlive-caption-9:svn56771-60.fc37.noarch 500/754 Verifying : texlive-carlisle-9:svn56753-60.fc37.noarch 501/754 Verifying : texlive-catchfile-9:svn53084-60.fc37.noarch 502/754 Verifying : texlive-changepage-9:svn15878.1.0c-60.fc37.noarc 503/754 Verifying : texlive-charter-9:svn15878.0-60.fc37.noarch 504/754 Verifying : texlive-cite-9:svn36428.5.5-60.fc37.noarch 505/754 Verifying : texlive-cm-super-9:svn15878.0-60.fc37.noarch 506/754 Verifying : texlive-cm-9:svn57963-60.fc37.noarch 507/754 Verifying : texlive-cmap-9:svn57640-60.fc37.noarch 508/754 Verifying : texlive-cmextra-9:svn57866-60.fc37.noarch 509/754 Verifying : texlive-collection-basic-9:svn59159-60.fc37.noar 510/754 Verifying : texlive-collection-fontsrecommended-9:svn54074-6 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texlive-enumitem-9:svn51423-60.fc37.noarch 527/754 Verifying : texlive-epsf-9:svn21461.2.7.4-60.fc37.noarch 528/754 Verifying : texlive-epstopdf-9:20210325-54.fc37.noarch 529/754 Verifying : texlive-epstopdf-pkg-9:svn53546-60.fc37.noarch 530/754 Verifying : texlive-eso-pic-9:svn56658-60.fc37.noarch 531/754 Verifying : texlive-etex-pkg-9:svn41784-60.fc37.noarch 532/754 Verifying : texlive-etex-9:svn56291-60.fc37.noarch 533/754 Verifying : texlive-etexcmds-9:svn53171-60.fc37.noarch 534/754 Verifying : texlive-etoolbox-9:svn56554-60.fc37.noarch 535/754 Verifying : texlive-euenc-9:svn19795.0.1h-60.fc37.noarch 536/754 Verifying : texlive-euler-9:svn42428-60.fc37.noarch 537/754 Verifying : texlive-euro-ce-9:svn25714-60.fc37.noarch 538/754 Verifying : texlive-euro-9:svn22191.1.1-60.fc37.noarch 539/754 Verifying : texlive-eurosym-9:svn17265.1.4_subrfix-60.fc37.n 540/754 Verifying : texlive-everysel-9:svn57489-60.fc37.noarch 541/754 Verifying : texlive-everyshi-9:svn57001-60.fc37.noarch 542/754 Verifying : texlive-extsizes-9:svn17263.1.4a-60.fc37.noarch 543/754 Verifying : texlive-fancybox-9:svn18304.1.4-60.fc37.noarch 544/754 Verifying : texlive-fancyhdr-9:svn64977-60.fc37.noarch 545/754 Verifying : texlive-fancyref-9:svn15878.0.9c-60.fc37.noarch 546/754 Verifying : texlive-fancyvrb-9:svn57488-60.fc37.noarch 547/754 Verifying : texlive-filecontents-9:svn52142-60.fc37.noarch 548/754 Verifying : texlive-filehook-9:svn56479-60.fc37.noarch 549/754 Verifying : texlive-finstrut-9:svn21719.0.5-60.fc37.noarch 550/754 Verifying : texlive-firstaid-9:svn58440-60.fc37.noarch 551/754 Verifying : texlive-fix2col-9:svn38770-60.fc37.noarch 552/754 Verifying : texlive-float-9:svn15878.1.3d-60.fc37.noarch 553/754 Verifying : texlive-fontspec-9:svn56594-60.fc37.noarch 554/754 Verifying : texlive-footmisc-9:svn23330.5.5b-60.fc37.noarch 555/754 Verifying : texlive-footnotehyper-9:svn57618-60.fc37.noarch 556/754 Verifying : texlive-fp-9:svn49719-60.fc37.noarch 557/754 Verifying : texlive-fpl-9:svn54512-60.fc37.noarch 558/754 Verifying : texlive-geometry-9:svn54080-60.fc37.noarch 559/754 Verifying : texlive-gettitlestring-9:svn53170-60.fc37.noarch 560/754 Verifying : texlive-glyphlist-9:20210325-54.fc37.noarch 561/754 Verifying : texlive-graphics-cfg-9:svn41448-60.fc37.noarch 562/754 Verifying : texlive-graphics-def-9:svn58539-60.fc37.noarch 563/754 Verifying : texlive-graphics-9:svn56514-60.fc37.noarch 564/754 Verifying : texlive-grfext-9:svn53024-60.fc37.noarch 565/754 Verifying : texlive-grffile-9:svn52756-60.fc37.noarch 566/754 Verifying : texlive-gsftopk-9:20210325-54.fc37.x86_64 567/754 Verifying : texlive-helvetic-9:svn31835.0-60.fc37.noarch 568/754 Verifying : texlive-hobsub-9:svn52810-60.fc37.noarch 569/754 Verifying : texlive-hologo-9:svn53048-60.fc37.noarch 570/754 Verifying : texlive-hopatch-9:svn56106-60.fc37.noarch 571/754 Verifying : texlive-hycolor-9:svn53584-60.fc37.noarch 572/754 Verifying : texlive-hyperref-9:svn58024-60.fc37.noarch 573/754 Verifying : texlive-hyph-utf8-9:svn58619-60.fc37.noarch 574/754 Verifying : texlive-hyphen-base-9:svn58630-60.fc37.noarch 575/754 Verifying : texlive-hyphenex-9:svn57387-60.fc37.noarch 576/754 Verifying : texlive-ifmtarg-9:svn47544-60.fc37.noarch 577/754 Verifying : texlive-ifplatform-9:svn45533-60.fc37.noarch 578/754 Verifying : texlive-iftex-9:svn56594-60.fc37.noarch 579/754 Verifying : texlive-inconsolata-9:svn54512-60.fc37.noarch 580/754 Verifying : texlive-index-9:svn24099.4.1beta-60.fc37.noarch 581/754 Verifying : texlive-infwarerr-9:svn53023-60.fc37.noarch 582/754 Verifying : texlive-intcalc-9:svn53168-60.fc37.noarch 583/754 Verifying : texlive-jknapltx-9:svn19440.0-60.fc37.noarch 584/754 Verifying : texlive-kastrup-9:svn15878.0-60.fc37.noarch 585/754 Verifying : texlive-knuth-lib-9:svn57963-60.fc37.noarch 586/754 Verifying : texlive-knuth-local-9:svn57963-60.fc37.noarch 587/754 Verifying : texlive-koma-script-9:svn58585-60.fc37.noarch 588/754 Verifying : texlive-kpathsea-9:20210325-54.fc37.x86_64 589/754 Verifying : texlive-kvdefinekeys-9:svn53193-60.fc37.noarch 590/754 Verifying : texlive-kvoptions-9:svn56609-60.fc37.noarch 591/754 Verifying : texlive-kvsetkeys-9:svn53166-60.fc37.noarch 592/754 Verifying : texlive-l3backend-9:svn59118-60.fc37.noarch 593/754 Verifying : texlive-l3experimental-9:svn57789-60.fc37.noarch 594/754 Verifying : texlive-l3kernel-9:svn59118-60.fc37.noarch 595/754 Verifying : texlive-l3packages-9:svn59118-60.fc37.noarch 596/754 Verifying : texlive-latex-9:20210325-54.fc37.noarch 597/754 Verifying : texlive-latex-fonts-9:svn28888.0-60.fc37.noarch 598/754 Verifying : texlive-latexbug-9:svn58151-60.fc37.noarch 599/754 Verifying : texlive-latexconfig-9:svn53525-60.fc37.noarch 600/754 Verifying : texlive-letltxmacro-9:svn53022-60.fc37.noarch 601/754 Verifying : texlive-lib-9:20210325-54.fc37.x86_64 602/754 Verifying : texlive-lineno-9:svn57866-60.fc37.noarch 603/754 Verifying : texlive-listings-9:svn55265-60.fc37.noarch 604/754 Verifying : texlive-lm-math-9:svn36915.1.959-60.fc37.noarch 605/754 Verifying : texlive-lm-9:svn58637-60.fc37.noarch 606/754 Verifying : texlive-logreq-9:svn53003-60.fc37.noarch 607/754 Verifying : texlive-ltabptch-9:svn17533.1.74d-60.fc37.noarch 608/754 Verifying : texlive-ltxcmds-9:svn56421-60.fc37.noarch 609/754 Verifying : texlive-ltxmisc-9:svn21927.0-60.fc37.noarch 610/754 Verifying : texlive-lua-alt-getopt-9:svn56414-60.fc37.noarch 611/754 Verifying : texlive-luabidi-9:svn54512-60.fc37.noarch 612/754 Verifying : texlive-luahbtex-9:20210325-54.fc37.x86_64 613/754 Verifying : texlive-lualatex-math-9:svn56541-60.fc37.noarch 614/754 Verifying : texlive-lualibs-9:svn57277-60.fc37.noarch 615/754 Verifying : texlive-luaotfload-9:20210325-54.fc37.noarch 616/754 Verifying : texlive-luatex-9:20210325-54.fc37.x86_64 617/754 Verifying : texlive-luatexbase-9:svn52663-60.fc37.noarch 618/754 Verifying : texlive-lwarp-9:20210325-54.fc37.noarch 619/754 Verifying : texlive-makecmds-9:svn15878.0-60.fc37.noarch 620/754 Verifying : texlive-makeindex-9:20210325-54.fc37.x86_64 621/754 Verifying : texlive-manfnt-font-9:svn54684-60.fc37.noarch 622/754 Verifying : texlive-marginnote-9:svn48383-60.fc37.noarch 623/754 Verifying : texlive-marvosym-9:svn29349.2.2a-60.fc37.noarch 624/754 Verifying : texlive-mathpazo-9:svn52663-60.fc37.noarch 625/754 Verifying : texlive-mathspec-9:svn42773-60.fc37.noarch 626/754 Verifying : texlive-mathtools-9:svn58856-60.fc37.noarch 627/754 Verifying : texlive-mdwtools-9:svn15878.1.05.4-60.fc37.noarc 628/754 Verifying : texlive-memoir-9:svn58666-60.fc37.noarch 629/754 Verifying : texlive-metafont-9:20210325-54.fc37.x86_64 630/754 Verifying : texlive-metalogo-9:svn18611.0.12-60.fc37.noarch 631/754 Verifying : texlive-mflogo-font-9:svn54512-60.fc37.noarch 632/754 Verifying : texlive-mflogo-9:svn42428-60.fc37.noarch 633/754 Verifying : texlive-mfnfss-9:svn46036-60.fc37.noarch 634/754 Verifying : texlive-mfware-9:20210325-54.fc37.x86_64 635/754 Verifying : texlive-microtype-9:svn58394-60.fc37.noarch 636/754 Verifying : texlive-minitoc-9:svn48196-60.fc37.noarch 637/754 Verifying : texlive-mnsymbol-9:svn18651.1.4-60.fc37.noarch 638/754 Verifying : texlive-modes-9:svn56303-60.fc37.noarch 639/754 Verifying : texlive-mparhack-9:svn59066-60.fc37.noarch 640/754 Verifying : texlive-mptopdf-9:20210325-54.fc37.noarch 641/754 Verifying : texlive-ms-9:svn57473-60.fc37.noarch 642/754 Verifying : texlive-multido-9:svn18302.1.42-60.fc37.noarch 643/754 Verifying : texlive-natbib-9:svn20668.8.31b-60.fc37.noarch 644/754 Verifying : texlive-ncntrsbk-9:svn31835.0-60.fc37.noarch 645/754 Verifying : texlive-newfloat-9:svn52906-60.fc37.noarch 646/754 Verifying : texlive-notoccite-9:svn18129.0-60.fc37.noarch 647/754 Verifying : texlive-ntgclass-9:svn56959-60.fc37.noarch 648/754 Verifying : texlive-oberdiek-9:20210325-54.fc37.noarch 649/754 Verifying : texlive-pagesel-9:svn56105-60.fc37.noarch 650/754 Verifying : texlive-palatino-9:svn31835.0-60.fc37.noarch 651/754 Verifying : texlive-paralist-9:svn43021-60.fc37.noarch 652/754 Verifying : texlive-parallel-9:svn15878.0-60.fc37.noarch 653/754 Verifying : texlive-parskip-9:svn58358-60.fc37.noarch 654/754 Verifying : texlive-pdfcolmk-9:svn52912-60.fc37.noarch 655/754 Verifying : texlive-pdfescape-9:svn53082-60.fc37.noarch 656/754 Verifying : texlive-pdflscape-9:svn53047-60.fc37.noarch 657/754 Verifying : texlive-pdfmanagement-testphase-9:svn59194-60.fc 658/754 Verifying : texlive-pdfpages-9:svn58212-60.fc37.noarch 659/754 Verifying : texlive-pdftex-9:20210325-54.fc37.x86_64 660/754 Verifying : texlive-pdftexcmds-9:svn55777-60.fc37.noarch 661/754 Verifying : texlive-pgf-9:svn57240-60.fc37.noarch 662/754 Verifying : texlive-picture-9:svn54867-60.fc37.noarch 663/754 Verifying : texlive-placeins-9:svn19848.2.2-60.fc37.noarch 664/754 Verifying : texlive-plain-9:svn57963-60.fc37.noarch 665/754 Verifying : texlive-polyglossia-9:svn58869-60.fc37.noarch 666/754 Verifying : texlive-psfrag-9:svn15878.3.04-60.fc37.noarch 667/754 Verifying : texlive-pslatex-9:svn57434-60.fc37.noarch 668/754 Verifying : texlive-psnfss-9:svn54694-60.fc37.noarch 669/754 Verifying : texlive-pspicture-9:svn15878.0-60.fc37.noarch 670/754 Verifying : texlive-pst-3d-9:svn17257.1.10-60.fc37.noarch 671/754 Verifying : texlive-pst-coil-9:svn37377.1.07-60.fc37.noarch 672/754 Verifying : texlive-pst-eps-9:svn15878.1.0-60.fc37.noarch 673/754 Verifying : texlive-pst-fill-9:svn15878.1.01-60.fc37.noarch 674/754 Verifying : texlive-pst-grad-9:svn15878.1.06-60.fc37.noarch 675/754 Verifying : texlive-pst-math-9:svn49425-60.fc37.noarch 676/754 Verifying : texlive-pst-node-9:svn54687-60.fc37.noarch 677/754 Verifying : texlive-pst-ovl-9:svn54963-60.fc37.noarch 678/754 Verifying : texlive-pst-plot-9:svn54080-60.fc37.noarch 679/754 Verifying : texlive-pst-text-9:svn49542-60.fc37.noarch 680/754 Verifying : texlive-pst-tools-9:svn54518-60.fc37.noarch 681/754 Verifying : texlive-pst-tree-9:svn43272-60.fc37.noarch 682/754 Verifying : texlive-pstricks-add-9:svn53763-60.fc37.noarch 683/754 Verifying : texlive-pstricks-9:svn58371-60.fc37.noarch 684/754 Verifying : texlive-pxfonts-9:svn15878.0-60.fc37.noarch 685/754 Verifying : texlive-qstest-9:svn15878.0-60.fc37.noarch 686/754 Verifying : texlive-ragged2e-9:svn57638-60.fc37.noarch 687/754 Verifying : texlive-rcs-9:svn15878.0-60.fc37.noarch 688/754 Verifying : texlive-realscripts-9:svn56594-60.fc37.noarch 689/754 Verifying : texlive-refcount-9:svn53164-60.fc37.noarch 690/754 Verifying : texlive-rerunfilecheck-9:svn54841-60.fc37.noarch 691/754 Verifying : texlive-rsfs-9:svn15878.0-60.fc37.noarch 692/754 Verifying : texlive-sansmath-9:svn17997.1.1-60.fc37.noarch 693/754 Verifying : texlive-sansmathaccent-9:svn53628-60.fc37.noarch 694/754 Verifying : texlive-sauerj-9:svn15878.0-60.fc37.noarch 695/754 Verifying : texlive-section-9:svn20180.0-60.fc37.noarch 696/754 Verifying : texlive-seminar-9:svn34011.1.62-60.fc37.noarch 697/754 Verifying : texlive-sepnum-9:svn20186.2.0-60.fc37.noarch 698/754 Verifying : texlive-setspace-9:svn24881.6.7a-60.fc37.noarch 699/754 Verifying : texlive-showexpl-9:svn57414-60.fc37.noarch 700/754 Verifying : texlive-soul-9:svn56495-60.fc37.noarch 701/754 Verifying : texlive-stringenc-9:svn52982-60.fc37.noarch 702/754 Verifying : texlive-subfig-9:svn15878.1.3-60.fc37.noarch 703/754 Verifying : texlive-symbol-9:svn31835.0-60.fc37.noarch 704/754 Verifying : texlive-tex-9:20210325-54.fc37.x86_64 705/754 Verifying : texlive-tex-gyre-math-9:svn41264-60.fc37.noarch 706/754 Verifying : texlive-tex-gyre-9:svn48058-60.fc37.noarch 707/754 Verifying : texlive-tex-ini-files-9:svn40533-60.fc37.noarch 708/754 Verifying : texlive-texlive-common-doc-9:svn54176-60.fc37.no 709/754 Verifying : texlive-texlive-en-9:20210325-54.fc37.noarch 710/754 Verifying : texlive-texlive-msg-translations-9:svn59096-60.f 711/754 Verifying : texlive-texlive-scripts-9:20210325-54.fc37.noarc 712/754 Verifying : texlive-texlive-scripts-extra-9:20210325-54.fc37 713/754 Verifying : texlive-texlive.infra-9:20210325-54.fc37.noarch 714/754 Verifying : texlive-textcase-9:svn52092-60.fc37.noarch 715/754 Verifying : texlive-thumbpdf-9:20210325-54.fc37.noarch 716/754 Verifying : texlive-times-9:svn35058.0-60.fc37.noarch 717/754 Verifying : texlive-tipa-9:svn29349.1.3-60.fc37.noarch 718/754 Verifying : texlive-titlesec-9:svn52413-60.fc37.noarch 719/754 Verifying : texlive-tools-9:svn56514-60.fc37.noarch 720/754 Verifying : texlive-translator-9:svn56052-60.fc37.noarch 721/754 Verifying : texlive-transparent-9:svn52981-60.fc37.noarch 722/754 Verifying : texlive-txfonts-9:svn15878.0-60.fc37.noarch 723/754 Verifying : texlive-typehtml-9:svn17134.0-60.fc37.noarch 724/754 Verifying : texlive-ucharcat-9:svn38907-60.fc37.noarch 725/754 Verifying : texlive-ucs-9:svn35853.2.2-60.fc37.noarch 726/754 Verifying : texlive-underscore-9:svn18261.0-60.fc37.noarch 727/754 Verifying : texlive-unicode-data-9:svn56768-60.fc37.noarch 728/754 Verifying : texlive-unicode-math-9:svn56594-60.fc37.noarch 729/754 Verifying : texlive-uniquecounter-9:svn53162-60.fc37.noarch 730/754 Verifying : texlive-url-9:svn32528.3.4-60.fc37.noarch 731/754 Verifying : texlive-utopia-9:svn15878.0-60.fc37.noarch 732/754 Verifying : texlive-varwidth-9:svn24104.0.92-60.fc37.noarch 733/754 Verifying : texlive-wasy-9:svn53533-60.fc37.noarch 734/754 Verifying : texlive-wasy-type1-9:svn53534-60.fc37.noarch 735/754 Verifying : texlive-wasysym-9:svn54080-60.fc37.noarch 736/754 Verifying : texlive-xcolor-9:svn41044-60.fc37.noarch 737/754 Verifying : texlive-xdvi-9:20210325-54.fc37.x86_64 738/754 Verifying : texlive-xetex-9:20210325-54.fc37.x86_64 739/754 Verifying : texlive-xetexconfig-9:svn45845-60.fc37.noarch 740/754 Verifying : texlive-xifthen-9:svn38929-60.fc37.noarch 741/754 Verifying : texlive-xkeyval-9:svn57006-60.fc37.noarch 742/754 Verifying : texlive-xltxtra-9:svn56594-60.fc37.noarch 743/754 Verifying : texlive-xpatch-9:svn54563-60.fc37.noarch 744/754 Verifying : texlive-xstring-9:svn49946-60.fc37.noarch 745/754 Verifying : texlive-xunicode-9:svn30466.0.981-60.fc37.noarch 746/754 Verifying : texlive-zapfchan-9:svn31835.0-60.fc37.noarch 747/754 Verifying : texlive-zapfding-9:svn31835.0-60.fc37.noarch 748/754 Verifying : texlive-zref-9:svn56611-60.fc37.noarch 749/754 Verifying : tzdata-java-2023c-1.fc37.noarch 750/754 Verifying : vim-data-2:9.0.2081-1.fc37.noarch 751/754 Verifying : vim-minimal-2:9.0.2081-1.fc37.x86_64 752/754 Verifying : xdg-utils-1.1.3-15.fc37.noarch 753/754 Verifying : xz-devel-5.4.1-1.fc37.x86_64 754/754 Installed products updated. 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perl-IPC-SysV-2.09-490.fc37.x86_64 perl-IPC-System-Simple-1.30-9.fc37.noarch perl-JSON-4.09-1.fc37.noarch perl-LDAP-1:0.68-8.fc37.noarch perl-LWP-MediaTypes-6.04-12.fc37.noarch perl-LWP-Protocol-https-6.10-7.fc37.noarch perl-Lingua-Translit-0.29-2.fc37.noarch perl-List-AllUtils-0.19-7.fc37.noarch perl-List-SomeUtils-0.58-10.fc37.noarch perl-List-UtilsBy-0.12-3.fc37.noarch perl-Locale-Maketext-1.32-1.fc37.noarch perl-Locale-Maketext-Simple-1:0.21-494.fc37.noarch perl-Log-Dispatch-2.70-8.fc37.noarch perl-Log-Dispatch-FileRotate-1.38-5.fc37.noarch perl-Log-Log4perl-1.57-1.fc37.noarch perl-MIME-Base64-3.16-489.fc37.x86_64 perl-MIME-Charset-1.013.1-1.fc37.noarch perl-MIME-Lite-3.033-5.fc37.noarch perl-MIME-Types-2.22-4.fc37.noarch perl-MRO-Compat-0.15-4.fc37.noarch perl-Mail-Sender-1:0.903-19.fc37.noarch perl-Mail-Sendmail-0.80-16.fc37.noarch perl-MailTools-2.21-12.fc37.noarch perl-Math-BigInt-1:1.9998.37-2.fc37.noarch perl-Math-BigRat-0.2624-2.fc37.noarch perl-Math-Complex-1.59-494.fc37.noarch perl-Module-CoreList-1:5.20231025-1.fc37.noarch perl-Module-Implementation-0.09-35.fc37.noarch perl-Module-Load-1:0.36-489.fc37.noarch perl-Module-Load-Conditional-0.74-489.fc37.noarch perl-Module-Metadata-1.000037-489.fc37.noarch perl-Module-Runtime-0.016-16.fc37.noarch perl-Mozilla-CA-20211001-4.fc37.noarch perl-NTLM-1.09-33.fc37.noarch perl-Net-HTTP-6.23-1.fc37.noarch perl-Net-SMTP-SSL-1.04-19.fc37.noarch perl-Net-SSLeay-1.92-4.fc37.x86_64 perl-Number-Compare-0.03-33.fc37.noarch perl-Opcode-1.57-494.fc37.x86_64 perl-POSIX-2.03-494.fc37.x86_64 perl-Package-Generator-1.106-26.fc37.noarch perl-Package-Stash-0.40-3.fc37.noarch perl-Package-Stash-XS-0.30-2.fc37.x86_64 perl-PadWalker-2.5-7.fc37.x86_64 perl-Params-Check-1:0.38-489.fc37.noarch perl-Params-Classify-0.015-17.fc37.x86_64 perl-Params-Util-1.102-8.fc37.x86_64 perl-Params-Validate-1.31-2.fc37.x86_64 perl-Params-ValidationCompiler-0.30-17.fc37.noarch 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texlive-pagesel-9:svn56105-60.fc37.noarch texlive-palatino-9:svn31835.0-60.fc37.noarch texlive-paralist-9:svn43021-60.fc37.noarch texlive-parallel-9:svn15878.0-60.fc37.noarch texlive-parskip-9:svn58358-60.fc37.noarch texlive-pdfcolmk-9:svn52912-60.fc37.noarch texlive-pdfescape-9:svn53082-60.fc37.noarch texlive-pdflscape-9:svn53047-60.fc37.noarch texlive-pdfmanagement-testphase-9:svn59194-60.fc37.noarch texlive-pdfpages-9:svn58212-60.fc37.noarch texlive-pdftex-9:20210325-54.fc37.x86_64 texlive-pdftexcmds-9:svn55777-60.fc37.noarch texlive-pgf-9:svn57240-60.fc37.noarch texlive-picture-9:svn54867-60.fc37.noarch texlive-placeins-9:svn19848.2.2-60.fc37.noarch texlive-plain-9:svn57963-60.fc37.noarch texlive-polyglossia-9:svn58869-60.fc37.noarch texlive-psfrag-9:svn15878.3.04-60.fc37.noarch texlive-pslatex-9:svn57434-60.fc37.noarch texlive-psnfss-9:svn54694-60.fc37.noarch texlive-pspicture-9:svn15878.0-60.fc37.noarch texlive-pst-3d-9:svn17257.1.10-60.fc37.noarch texlive-pst-coil-9:svn37377.1.07-60.fc37.noarch texlive-pst-eps-9:svn15878.1.0-60.fc37.noarch texlive-pst-fill-9:svn15878.1.01-60.fc37.noarch texlive-pst-grad-9:svn15878.1.06-60.fc37.noarch texlive-pst-math-9:svn49425-60.fc37.noarch texlive-pst-node-9:svn54687-60.fc37.noarch texlive-pst-ovl-9:svn54963-60.fc37.noarch texlive-pst-plot-9:svn54080-60.fc37.noarch texlive-pst-text-9:svn49542-60.fc37.noarch texlive-pst-tools-9:svn54518-60.fc37.noarch texlive-pst-tree-9:svn43272-60.fc37.noarch texlive-pstricks-9:svn58371-60.fc37.noarch texlive-pstricks-add-9:svn53763-60.fc37.noarch texlive-pxfonts-9:svn15878.0-60.fc37.noarch texlive-qstest-9:svn15878.0-60.fc37.noarch texlive-ragged2e-9:svn57638-60.fc37.noarch texlive-rcs-9:svn15878.0-60.fc37.noarch texlive-realscripts-9:svn56594-60.fc37.noarch texlive-refcount-9:svn53164-60.fc37.noarch texlive-rerunfilecheck-9:svn54841-60.fc37.noarch texlive-rsfs-9:svn15878.0-60.fc37.noarch texlive-sansmath-9:svn17997.1.1-60.fc37.noarch texlive-sansmathaccent-9:svn53628-60.fc37.noarch texlive-sauerj-9:svn15878.0-60.fc37.noarch texlive-section-9:svn20180.0-60.fc37.noarch texlive-seminar-9:svn34011.1.62-60.fc37.noarch texlive-sepnum-9:svn20186.2.0-60.fc37.noarch texlive-setspace-9:svn24881.6.7a-60.fc37.noarch texlive-showexpl-9:svn57414-60.fc37.noarch texlive-soul-9:svn56495-60.fc37.noarch texlive-stringenc-9:svn52982-60.fc37.noarch texlive-subfig-9:svn15878.1.3-60.fc37.noarch texlive-symbol-9:svn31835.0-60.fc37.noarch texlive-tex-9:20210325-54.fc37.x86_64 texlive-tex-gyre-9:svn48058-60.fc37.noarch texlive-tex-gyre-math-9:svn41264-60.fc37.noarch texlive-tex-ini-files-9:svn40533-60.fc37.noarch texlive-texlive-common-doc-9:svn54176-60.fc37.noarch texlive-texlive-en-9:20210325-54.fc37.noarch texlive-texlive-msg-translations-9:svn59096-60.fc37.noarch texlive-texlive-scripts-9:20210325-54.fc37.noarch texlive-texlive-scripts-extra-9:20210325-54.fc37.noarch texlive-texlive.infra-9:20210325-54.fc37.noarch texlive-textcase-9:svn52092-60.fc37.noarch texlive-thumbpdf-9:20210325-54.fc37.noarch texlive-times-9:svn35058.0-60.fc37.noarch texlive-tipa-9:svn29349.1.3-60.fc37.noarch texlive-titlesec-9:svn52413-60.fc37.noarch texlive-tools-9:svn56514-60.fc37.noarch texlive-translator-9:svn56052-60.fc37.noarch texlive-transparent-9:svn52981-60.fc37.noarch texlive-txfonts-9:svn15878.0-60.fc37.noarch texlive-typehtml-9:svn17134.0-60.fc37.noarch texlive-ucharcat-9:svn38907-60.fc37.noarch texlive-ucs-9:svn35853.2.2-60.fc37.noarch texlive-underscore-9:svn18261.0-60.fc37.noarch texlive-unicode-data-9:svn56768-60.fc37.noarch texlive-unicode-math-9:svn56594-60.fc37.noarch texlive-uniquecounter-9:svn53162-60.fc37.noarch texlive-url-9:svn32528.3.4-60.fc37.noarch texlive-utopia-9:svn15878.0-60.fc37.noarch texlive-varwidth-9:svn24104.0.92-60.fc37.noarch texlive-wasy-9:svn53533-60.fc37.noarch texlive-wasy-type1-9:svn53534-60.fc37.noarch texlive-wasysym-9:svn54080-60.fc37.noarch texlive-xcolor-9:svn41044-60.fc37.noarch texlive-xdvi-9:20210325-54.fc37.x86_64 texlive-xetex-9:20210325-54.fc37.x86_64 texlive-xetexconfig-9:svn45845-60.fc37.noarch texlive-xifthen-9:svn38929-60.fc37.noarch texlive-xkeyval-9:svn57006-60.fc37.noarch texlive-xltxtra-9:svn56594-60.fc37.noarch texlive-xpatch-9:svn54563-60.fc37.noarch texlive-xstring-9:svn49946-60.fc37.noarch texlive-xunicode-9:svn30466.0.981-60.fc37.noarch texlive-zapfchan-9:svn31835.0-60.fc37.noarch texlive-zapfding-9:svn31835.0-60.fc37.noarch texlive-zref-9:svn56611-60.fc37.noarch tk-1:8.6.12-3.fc37.x86_64 tk-devel-1:8.6.12-3.fc37.x86_64 tre-0.8.0-37.20140228gitc2f5d13.fc37.x86_64 tre-common-0.8.0-37.20140228gitc2f5d13.fc37.noarch tre-devel-0.8.0-37.20140228gitc2f5d13.fc37.x86_64 ttmkfdir-3.0.9-66.fc37.x86_64 tzdata-java-2023c-1.fc37.noarch urw-base35-bookman-fonts-20200910-15.fc37.noarch urw-base35-c059-fonts-20200910-15.fc37.noarch urw-base35-d050000l-fonts-20200910-15.fc37.noarch urw-base35-fonts-20200910-15.fc37.noarch urw-base35-fonts-common-20200910-15.fc37.noarch urw-base35-gothic-fonts-20200910-15.fc37.noarch urw-base35-nimbus-mono-ps-fonts-20200910-15.fc37.noarch urw-base35-nimbus-roman-fonts-20200910-15.fc37.noarch urw-base35-nimbus-sans-fonts-20200910-15.fc37.noarch urw-base35-p052-fonts-20200910-15.fc37.noarch urw-base35-standard-symbols-ps-fonts-20200910-15.fc37.noarch urw-base35-z003-fonts-20200910-15.fc37.noarch vim-data-2:9.0.2081-1.fc37.noarch vim-minimal-2:9.0.2081-1.fc37.x86_64 xdg-utils-1.1.3-15.fc37.noarch xml-common-0.6.3-59.fc37.noarch xorg-x11-fonts-Type1-7.5-34.fc37.noarch xorg-x11-proto-devel-2022.2-2.fc37.noarch xz-devel-5.4.1-1.fc37.x86_64 zlib-devel-1.2.12-5.fc37.x86_64 zziplib-0.13.72-2.fc37.x86_64 Complete! Finish: build setup for R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm Start: rpmbuild R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.CPmAQD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf VAJointSurv + /usr/bin/mkdir -p VAJointSurv + cd VAJointSurv + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/VAJointSurv_0.1.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d VAJointSurv/src ']' + find VAJointSurv/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d VAJointSurv/src ']' + find VAJointSurv/src/Makevars VAJointSurv/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cMdjoY + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd VAJointSurv + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.QmjNDO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd VAJointSurv + mkdir -p /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library VAJointSurv * installing *source* package 'VAJointSurv' ... ** package 'VAJointSurv' successfully unpacked and MD5 sums checked ** using staged installation ** libs g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c R-interface.cpp -o R-interface.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from arma-eigen-wrap.h:10, from R-interface.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:397, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from arma-eigen-wrap.h:21: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:377: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:370: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:439: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:50:7: required from 'class Eigen::SparseMapBase, 0, Eigen::OuterStride<> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:83:34: required from 'class Eigen::internal::SparseRefBase, 0, Eigen::OuterStride<> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from 'class Eigen::Ref, 0, Eigen::OuterStride<> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:37:41: required from 'struct Eigen::internal::is_ref_compatible_impl >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:43:81: required from 'struct Eigen::internal::is_ref_compatible >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:46:49: required from 'class Eigen::IterativeSolverBase, 3, Eigen::IncompleteCholesky > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from 'class Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >' /usr/local/lib/R/library/psqn/include/psqn.h:479:9: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:17:8: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMap.h:70:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from 'class Eigen::Ref, 0, Eigen::OuterStride<> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:37:41: required from 'struct Eigen::internal::is_ref_compatible_impl >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:43:81: required from 'struct Eigen::internal::is_ref_compatible >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:46:49: required from 'class Eigen::IterativeSolverBase, 3, Eigen::IncompleteCholesky > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from 'class Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >' /usr/local/lib/R/library/psqn/include/psqn.h:479:9: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:177:7: required from 'class Eigen::Ref, 0, Eigen::OuterStride<> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:37:41: required from 'struct Eigen::internal::is_ref_compatible_impl >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:43:81: required from 'struct Eigen::internal::is_ref_compatible >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:46:49: required from 'class Eigen::IterativeSolverBase, 3, Eigen::IncompleteCholesky > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from 'class Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >' /usr/local/lib/R/library/psqn/include/psqn.h:479:9: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:179:14: required from 'class Eigen::IncompleteCholesky' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:381:18: required from 'class Eigen::IterativeSolverBase, 3, Eigen::IncompleteCholesky > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from 'class Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >' /usr/local/lib/R/library/psqn/include/psqn.h:479:9: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:179:14: required from 'class Eigen::IncompleteCholesky' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:381:18: required from 'class Eigen::IterativeSolverBase, 3, Eigen::IncompleteCholesky > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:158:7: required from 'class Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >' /usr/local/lib/R/library/psqn/include/psqn.h:479:9: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 3, Eigen::IncompleteCholesky >, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 3, Eigen::IncompleteCholesky >, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 3, Eigen::IncompleteCholesky >, Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >' /usr/local/lib/R/library/psqn/include/psqn.h:492:21: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:926:66: required from 'void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from 'void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/psqn/include/psqn.h:1903:33: required from 'void PSQN::optimizer::fill_sparse_B_mat() [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:1979:5: required from 'Eigen::SparseMatrix PSQN::optimizer::true_hess_sparse(const double*, double, double, double, unsigned int) [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' R-interface.cpp:993:39: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:218:17: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:219:17: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:241:30: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseUnaryOp, const Eigen::Matrix > >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseUnaryOp, const Eigen::Matrix > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseUnaryOp, const Eigen::Matrix > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseUnaryOp, const Eigen::Matrix >, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::CwiseUnaryOp, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:241:42: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:59:34: required from 'class Eigen::RefBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:235:77: required from 'class Eigen::Ref, 0, Eigen::InnerStride<1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:21: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76: required from 'class Eigen::Ref, 0, Eigen::InnerStride<1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:21: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:193:76: required from 'class Eigen::Ref, 0, Eigen::InnerStride<1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:21: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:329:16: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:330:18: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:352:42: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:445: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:44:50: required from 'struct Eigen::internal::traits, 0, Eigen::InnerStride<1> > >::match, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:200:101: required by substitution of 'template Eigen::Ref, 0, Eigen::InnerStride<1> >::Ref(const Eigen::DenseBase&, typename Eigen::internal::enable_if<(bool)(Eigen::internal::traits, 0, Eigen::InnerStride<1> > >::match::MatchAtCompileTime), Derived>::type*) [with Derived = Eigen::Block, -1, 1, false>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:352:21: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:353:42: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:44:50: required from 'struct Eigen::internal::traits, 0, Eigen::InnerStride<1> > >::match, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Ref.h:200:101: required by substitution of 'template Eigen::Ref, 0, Eigen::InnerStride<1> >::Ref(const Eigen::DenseBase&, typename Eigen::internal::enable_if<(bool)(Eigen::internal::traits, 0, Eigen::InnerStride<1> > >::match::MatchAtCompileTime), Derived>::type*) [with Derived = Eigen::Block, -1, 1, false>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:353:21: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1067:93: required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from 'void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from 'void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/psqn/include/psqn.h:1903:33: required from 'void PSQN::optimizer::fill_sparse_B_mat() [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:1979:5: required from 'Eigen::SparseMatrix PSQN::optimizer::true_hess_sparse(const double*, double, double, double, unsigned int) [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' R-interface.cpp:993:39: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]' /usr/local/lib/R/library/psqn/include/psqn.h:438:32: required from 'void PSQN::base_optimizer::add_constraints_to_sparse_hess(Eigen::SparseMatrix&) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:472:7: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Array >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Array > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, Eigen::Array > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Array >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1243:70: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::insert(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:217:16: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::Scalar& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::coeffRef(Eigen::Index, Eigen::Index) [with _Scalar = double; int _Options = 0; _StorageIndex = int; Scalar = double; Eigen::Index = long int]' /usr/local/lib/R/library/psqn/include/psqn.h:438:32: required from 'void PSQN::base_optimizer::add_constraints_to_sparse_hess(Eigen::SparseMatrix&) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:472:7: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, -1, 1, false>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, -1, 1, false>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, -1, 1, false>, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> >, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> >, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, -1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:385:19: required from 'void Eigen::IncompleteCholesky::updateList(Eigen::Ref >, Eigen::Ref >, Eigen::Ref >, const Eigen::Index&, const Eigen::Index&, VectorIx&, VectorList&) [with Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename _OrderingType::PermutationType::StorageIndex = int; typename _OrderingType::PermutationType = Eigen::PermutationMatrix<-1, -1, int>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; Eigen::Index = long int; VectorIx = Eigen::Matrix; VectorList = std::vector >, std::allocator > > >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:11: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:932:15: required from 'void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from 'void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/psqn/include/psqn.h:1903:33: required from 'void PSQN::optimizer::fill_sparse_B_mat() [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:1979:5: required from 'Eigen::SparseMatrix PSQN::optimizer::true_hess_sparse(const double*, double, double, double, unsigned int) [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' R-interface.cpp:993:39: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:232:18: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::InnerStride<1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:811:41: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:381:18: required from 'void Eigen::IncompleteCholesky::updateList(Eigen::Ref >, Eigen::Ref >, Eigen::Ref >, const Eigen::Index&, const Eigen::Index&, VectorIx&, VectorList&) [with Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename _OrderingType::PermutationType::StorageIndex = int; typename _OrderingType::PermutationType = Eigen::PermutationMatrix<-1, -1, int>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; Eigen::Index = long int; VectorIx = Eigen::Matrix; VectorList = std::vector >, std::allocator > > >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:11: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:385:34: required from 'void Eigen::IncompleteCholesky::updateList(Eigen::Ref >, Eigen::Ref >, Eigen::Ref >, const Eigen::Index&, const Eigen::Index&, VectorIx&, VectorList&) [with Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename _OrderingType::PermutationType::StorageIndex = int; typename _OrderingType::PermutationType = Eigen::PermutationMatrix<-1, -1, int>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; Eigen::Index = long int; VectorIx = Eigen::Matrix; VectorList = std::vector >, std::allocator > > >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:11: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 0, Eigen::InnerStride<1> >, -1, 1, false> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:71:51: required from 'class Eigen::internal::visitor_evaluator, 0, Eigen::InnerStride<1> >, -1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:110:17: required from 'void Eigen::DenseBase::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor, 0, Eigen::InnerStride<1> >, -1, 1, false> >; Derived = Eigen::Block, 0, Eigen::InnerStride<1> >, -1, 1, false>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:229:14: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::minCoeff(IndexType*) const [with IndexType = long int; Derived = Eigen::Block, 0, Eigen::InnerStride<1> >, -1, 1, false>; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:385:34: required from 'void Eigen::IncompleteCholesky::updateList(Eigen::Ref >, Eigen::Ref >, Eigen::Ref >, const Eigen::Index&, const Eigen::Index&, VectorIx&, VectorList&) [with Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename _OrderingType::PermutationType::StorageIndex = int; typename _OrderingType::PermutationType = Eigen::PermutationMatrix<-1, -1, int>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; Eigen::Index = long int; VectorIx = Eigen::Matrix; VectorList = std::vector >, std::allocator > > >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:11: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::InnerStride<1> >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::InnerStride<1> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::InnerStride<1> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:391:21: required from 'void Eigen::IncompleteCholesky::updateList(Eigen::Ref >, Eigen::Ref >, Eigen::Ref >, const Eigen::Index&, const Eigen::Index&, VectorIx&, VectorList&) [with Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename _OrderingType::PermutationType::StorageIndex = int; typename _OrderingType::PermutationType = Eigen::PermutationMatrix<-1, -1, int>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; typename Eigen::internal::conditional::IsVectorAtCompileTime, Eigen::InnerStride<1>, Eigen::OuterStride<> >::type = Eigen::InnerStride<1>; Eigen::Index = long int; VectorIx = Eigen::Matrix; VectorList = std::vector >, std::allocator > > >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:316:11: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1391:8: required from 'struct Eigen::internal::evaluator >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:45: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::SparseMatrix; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; Derived = Eigen::SparseMatrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1125:27: required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::SparseMatrix; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:949:7: required from 'void Eigen::internal::set_from_triplets(const InputIterator&, const InputIterator&, SparseMatrixType&, DupFunctor) [with InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; SparseMatrixType = Eigen::SparseMatrix; DupFunctor = scalar_sum_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:996:92: required from 'void Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::setFromTriplets(const InputIterators&, const InputIterators&) [with InputIterators = __gnu_cxx::__normal_iterator*, std::vector > >; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/psqn/include/psqn.h:1903:33: required from 'void PSQN::optimizer::fill_sparse_B_mat() [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' /usr/local/lib/R/library/psqn/include/psqn.h:1979:5: required from 'Eigen::SparseMatrix PSQN::optimizer::true_hess_sparse(const double*, double, double, double, unsigned int) [with EFunc = lower_bound_term; TReporter = PSQN::R_reporter; Tinterrupter = PSQN::R_interrupter; Tcaller = lower_bound_caller; Tconstraint = PSQN::default_constraint]' R-interface.cpp:993:39: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:217:27: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseRef.h:364:8: required from 'struct Eigen::internal::evaluator, 0, Eigen::OuterStride<> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseSelfAdjointView.h:434:57: required from 'void Eigen::internal::permute_symm_to_fullsymm(const MatrixType&, Eigen::SparseMatrix&, const typename MatrixType::StorageIndex*) [with int Mode = 3; MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; int DestOrder = 1; typename MatrixType::StorageIndex = int; typename MatrixType::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseSelfAdjointView.h:641:45: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Sparse2Sparse>::run(Eigen::SparseMatrix&, const SrcXprType&, const Eigen::internal::assign_op&) [with int Options = 0; DstXprType = Eigen::SparseMatrix; MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; int Mode = 3; Scalar = double; typename DstXprType::StorageIndex = int; SrcXprType = Eigen::SparseSymmetricPermutationProduct, 0, Eigen::OuterStride<> >, 3>; typename MatrixType::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::SparseMatrix; Src = Eigen::SparseSymmetricPermutationProduct, 0, Eigen::OuterStride<> >, 3>; Func = assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:842:27: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:783:29: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::SparseSymmetricPermutationProduct, 0, Eigen::OuterStride<> >, 3>; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:208:9: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase, 0, Eigen::OuterStride<> > > >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase, 0, Eigen::OuterStride<> > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from 'class Eigen::internal::SparseTransposeImpl, 0, Eigen::OuterStride<> >, 1024>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from 'class Eigen::TransposeImpl, 0, Eigen::OuterStride<> >, Eigen::Sparse>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose, 0, Eigen::OuterStride<> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:223:23: required from 'void Eigen::ConjugateGradient<_MatrixType, _UpLo, _Preconditioner>::_solve_with_guess_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; _MatrixType = Eigen::SparseMatrix; int _UpLo = 3; _Preconditioner = Eigen::IncompleteCholesky]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:237:27: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, true>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, true>, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, true>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, -1, 1, true, true>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0, 7>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:43:35: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Block, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0>, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Block, -1, 1, true>, const Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Block, -1, 1, true>, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:43:29: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:64:20: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0, 7>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, 0, Eigen::OuterStride<> > >, Eigen::Matrix, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:71:25: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:74:16: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:86:11: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Block, -1, 1, true> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Block, -1, 1, true> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Block, -1, 1, true> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Block, -1, 1, true>, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:45:40: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:55:50: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Matrix, const Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Matrix, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, const Eigen::Matrix, const Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::Matrix, const Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:44: required from 'static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Matrix; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator >; Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Matrix; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseSelfAdjointView.h:467:24: required from 'void Eigen::internal::permute_symm_to_fullsymm(const MatrixType&, Eigen::SparseMatrix&, const typename MatrixType::StorageIndex*) [with int Mode = 3; MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; int DestOrder = 1; typename MatrixType::StorageIndex = int; typename MatrixType::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseSelfAdjointView.h:641:45: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Sparse2Sparse>::run(Eigen::SparseMatrix&, const SrcXprType&, const Eigen::internal::assign_op&) [with int Options = 0; DstXprType = Eigen::SparseMatrix; MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; int Mode = 3; Scalar = double; typename DstXprType::StorageIndex = int; SrcXprType = Eigen::SparseSymmetricPermutationProduct, 0, Eigen::OuterStride<> >, 3>; typename MatrixType::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:783:29: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::EigenBase&) [with OtherDerived = Eigen::SparseSymmetricPermutationProduct, 0, Eigen::OuterStride<> >, 3>; _Scalar = double; int _Options = 0; _StorageIndex = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:208:9: required from 'void Eigen::IncompleteCholesky::factorize(const _MatrixType&) [with MatrixType = Eigen::Ref, 0, Eigen::OuterStride<> >; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h:221:31: required from 'Derived& Eigen::IterativeSolverBase::factorize(const Eigen::EigenBase&) [with MatrixDerived = Eigen::SparseMatrix; Derived = Eigen::ConjugateGradient, 3, Eigen::IncompleteCholesky >]' /usr/local/lib/R/library/psqn/include/psqn.h:480:19: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:99:8: required from 'struct Eigen::internal::evaluator, -1, 1, true> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:522:41: required from 'struct Eigen::internal::unary_evaluator, const Eigen::Block, -1, 1, true> >, Eigen::internal::IndexBased, double>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator, const Eigen::Block, -1, 1, true> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:349:33: required from 'class Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:416:17: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Block, -1, 1, true> > >; Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Block, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Block, -1, 1, true>; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:45:40: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix; typename Eigen::NumTraits::Scalar>::Real = double; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:55:50: required from 'void Eigen::internal::conjugate_gradient(const MatrixType&, const Rhs&, Dest&, const Preconditioner&, Eigen::Index&, typename Dest::RealScalar&) [with MatrixType = Eigen::Transpose, 0, Eigen::OuterStride<> > >; Rhs = Eigen::Block, -1, 1, true>; Dest = Eigen::Block, -1, 1, true>; Preconditioner = Eigen::IncompleteCholesky; Eigen::Index = long int; typename Dest::RealScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:224:35: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, true> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = add_assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, true>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Functor = Eigen::internal::add_assign_op; Weak = void]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = add_assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, true>; Src = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Func = add_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:177:18: required from 'Derived& Eigen::MatrixBase::operator+=(const Eigen::MatrixBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Matrix >; Derived = Eigen::Block, -1, 1, true>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:74:7: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::Matrix, const Eigen::Matrix > >; Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix >; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:37:51: required from 'static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Matrix; U = Eigen::Matrix; bool NeedToTranspose = false; ResScalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: required from 'typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType Eigen::MatrixBase::dot(const Eigen::MatrixBase&) const [with OtherDerived = Eigen::Matrix; Derived = Eigen::Matrix; typename Eigen::ScalarBinaryOpTraits::Scalar, typename Eigen::internal::traits::Scalar>::ReturnType = double; typename Eigen::internal::traits::Scalar = double; typename Eigen::internal::traits::Scalar = double]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h:67:48: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix, 2>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix, 2> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix, 2> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base, Eigen::Matrix, 2, 7>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl, Eigen::Matrix, 2, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product, Eigen::Matrix, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:158:50: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Matrix, 1>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Matrix, 1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Matrix, 1> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base >, Eigen::Matrix, 1, 7>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl >, Eigen::Matrix, 1, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product >, Eigen::Matrix, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:160:32: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase, 1> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTriangularView.h:25:56: required from 'class Eigen::TriangularViewImpl, 1, Eigen::Sparse>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:186:58: required from 'class Eigen::TriangularView, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:161:45: required from 'void Eigen::IncompleteCholesky::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::IncompleteCholesky; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1>, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1>, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1>, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl, 1>, Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve, 1>, Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:161:53: required from 'void Eigen::IncompleteCholesky::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase > >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from 'class Eigen::internal::SparseTransposeImpl, 1024>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from 'class Eigen::TransposeImpl, Eigen::Sparse>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:162:22: required from 'void Eigen::IncompleteCholesky::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >, 2> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseTriangularView.h:25:56: required from 'class Eigen::TriangularViewImpl >, 2, Eigen::Sparse>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/TriangularMatrix.h:186:58: required from 'class Eigen::TriangularView >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:162:55: required from 'void Eigen::IncompleteCholesky::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: required from 'static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::IncompleteCholesky; RhsType = Eigen::Matrix; Scalar = double; SrcXprType = Eigen::Solve, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, Eigen::Matrix >; Func = assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 2>, Eigen::Matrix >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, 2>, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, 2>, Eigen::Matrix > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:86:7: required from 'class Eigen::SolveImpl >, 2>, Eigen::Matrix, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:62:7: required from 'class Eigen::Solve >, 2>, Eigen::Matrix >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:162:63: required from 'void Eigen::IncompleteCholesky::_solve_impl(const Rhs&, Dest&) const [with Rhs = Eigen::Matrix; Dest = Eigen::Matrix; Scalar = double; int _UpLo = 3; _OrderingType = Eigen::AMDOrdering]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Solve.h:147:26: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Matrix, 2>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Matrix, 2> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Matrix, 2> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:115:7: required from 'class Eigen::internal::dense_product_base >, Eigen::Matrix, 2, 7>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:147:7: required from 'class Eigen::ProductImpl >, Eigen::Matrix, 2, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from 'class Eigen::Product >, Eigen::Matrix, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h:165:30: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: [ skipping 25 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:174:81: required from 'class Eigen::DenseBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:221:34: required from 'class Eigen::MapBase, 1, 1, false>, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, 1, false, true>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 1, 1, false>, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 1, 1, false>, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 1, 1, false> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 1, 1, false>, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense, 1, 1, false, true>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 23 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, 1, false> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = swap_assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = Eigen::internal::swap_assign_op; Weak = void]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = swap_assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = swap_assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:418:22: required from 'void Eigen::DenseBase::swap(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 1, 1, false>; Derived = Eigen::Block, 1, 1, false>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:992:18: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 989 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, 1, 1, false> >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:730:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, 1, 1, false>; SrcXprType = Eigen::Block, 1, 1, false>; Functor = Eigen::internal::assign_op; Weak = void]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = assign_op]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>; Func = assign_op; typename enable_if<(! evaluator_assume_aliasing::value), void*>::type = void*; typename evaluator_traits::Shape = Eigen::DenseShape]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, 1, 1, false>; Src = Eigen::Block, 1, 1, false>]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: [ skipping 22 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:714:32: required from 'Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; Derived = Eigen::Matrix]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 3, Eigen::IncompleteCholesky >, Eigen::Matrix >; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]' /usr/local/lib/R/library/psqn/include/psqn.h:492:11: required from 'bool PSQN::base_optimizer::conj_grad(const double*, double*, double, PSQN::psqn_uint, int, PSQN::precondition) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' /usr/local/lib/R/library/psqn/include/psqn.h:854:11: required from 'PSQN::optim_info PSQN::base_optimizer::optim(double*, double, PSQN::psqn_uint, double, double, bool, int, double, bool, PSQN::psqn_uint, PSQN::precondition, double) [with OptT = PSQN::optimizer; Tconstraint = PSQN::default_constraint; PSQN::psqn_uint = long unsigned int]' R-interface.cpp:1166:32: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:989:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from arma-eigen-wrap.h:10, from VAJointSurv_types.h:1, from RcppExports.cpp:4: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:397, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Dense:1, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:28, from /usr/local/lib/R/library/RcppEigen/include/RcppEigen.h:25, from arma-eigen-wrap.h:21: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes] 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes] 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes] 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 161 | template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 162 | template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 163 | template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 718 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 741 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 764 | struct palign_impl | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 778 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 783 | ptranspose(PacketBlock& kernel) { | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__m128i'} [-Wignored-attributes] 790 | ptranspose(PacketBlock& kernel) { | ^ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:377: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 15 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes] 22 | template<> struct conj_helper { \ | ^ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:370: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/Core:439: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7: required from 'class Eigen::Quaternion' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /usr/local/lib/R/library/RcppEigen/include/Eigen/SparseCore:37, from /usr/local/lib/R/library/RcppEigen/include/Eigen/Sparse:26, from /usr/local/lib/R/library/RcppEigen/include/RcppEigenForward.h:29: /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 187 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 205 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 55 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/local/lib/R/library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:110:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:107:33: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:453:25: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/local/lib/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:35: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:80:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/local/lib/R/library/RcppEigen/include/RcppEigenWrap.h:110:39: required from 'SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from 'SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' /usr/local/lib/R/library/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from 'SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::SparseMatrix; SEXP = SEXPREC*]' RcppExports.cpp:107:33: required from here /usr/local/lib/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128i'} [-Wignored-attributes] 650 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c VA-parameter.cpp -o VA-parameter.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c bases.cpp -o bases.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from bases.h:4, from bases.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ghq-delayed-entry.cpp -o ghq-delayed-entry.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from ghq.h:5, from ghq-delayed-entry.h:1, from ghq-delayed-entry.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c ghq.cpp -o ghq.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from ghq.h:5, from ghq.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c init.cpp -o init.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c integrand-expected-survival.cpp -o integrand-expected-survival.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from ghq.h:5, from integrand-expected-survival.h:4, from integrand-expected-survival.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c kl-term.cpp -o kl-term.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from kl-term.h:7, from kl-term.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c marker-term.cpp -o marker-term.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from bases.h:4, from marker-term.h:6, from marker-term.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-VA-parameter.cpp -o test-VA-parameter.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-bases.cpp -o test-bases.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from bases.h:4, from test-bases.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-ghq-delayed-entry.cpp -o test-ghq-delayed-entry.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from ghq.h:5, from ghq-delayed-entry.h:1, from test-ghq-delayed-entry.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-integrand-expected-survival.cpp -o test-integrand-expected-survival.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from ghq.h:5, from integrand-expected-survival.h:4, from test-integrand-expected-survival.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-kl-term.cpp -o test-kl-term.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from kl-term.h:7, from test-kl-term.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-log-cholesky.cpp -o test-log-cholesky.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from log-cholesky.h:4, from test-log-cholesky.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-lp-joint.cpp -o test-lp-joint.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-marker-term.cpp -o test-marker-term.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from bases.h:4, from marker-term.h:6, from test-marker-term.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-runner.cpp -o test-runner.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c test-survival-term.cpp -o test-survival-term.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from arma-wrap.h:16, from bases.h:4, from survival-term.h:5, from test-survival-term.cpp:1: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details' 329 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppEigen/include' -I'/usr/local/lib/R/library/testthat/include' -I'/usr/local/lib/R/library/psqn/include' -I/usr/local/include -fopenmp -DPSQN_USE_EIGEN -DPSQN_W_LAPACK -fpic -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -c wmem.cpp -o wmem.o g++ -std=gnu++17 -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o VAJointSurv.so R-interface.o RcppExports.o VA-parameter.o bases.o ghq-delayed-entry.o ghq.o init.o integrand-expected-survival.o kl-term.o marker-term.o test-VA-parameter.o test-bases.o test-ghq-delayed-entry.o test-integrand-expected-survival.o test-kl-term.o test-log-cholesky.o test-lp-joint.o test-marker-term.o test-runner.o test-survival-term.o wmem.o -fopenmp -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library/00LOCK-VAJointSurv/00new/VAJointSurv/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'VAJointSurv' finding HTML links ... done VAJointSurv-terms html bs_term html joint_ms_format html joint_ms_hess html finding level-2 HTML links ... done joint_ms_lb html joint_ms_opt html joint_ms_profile html joint_ms_ptr html joint_ms_set_vcov html joint_ms_start_val html joint_ms_va_par html marker_term html ns_term html plot_marker html plot_surv html poly_term html stacked_term html surv_term html weighted_term html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (VAJointSurv) + test -d VAJointSurv/src + cd VAJointSurv/src + rm -f R-interface.o RcppExports.o VA-parameter.o bases.o ghq-delayed-entry.o ghq.o init.o integrand-expected-survival.o kl-term.o marker-term.o test-VA-parameter.o test-bases.o test-ghq-delayed-entry.o test-integrand-expected-survival.o test-kl-term.o test-log-cholesky.o test-lp-joint.o test-marker-term.o test-runner.o test-survival-term.o wmem.o VAJointSurv.so + rm -f /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.1.0-1.fc37.copr6665701 --unique-debug-suffix -0.1.0-1.fc37.copr6665701.x86_64 --unique-debug-src-base R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/VAJointSurv extracting debug info from /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64/usr/local/lib/R/library/VAJointSurv/libs/VAJointSurv.so original debug info size: 34152kB, size after compression: 31156kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 1266 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 Provides: R-CRAN-VAJointSurv = 0.1.0-1.fc37.copr6665701 R-CRAN-VAJointSurv(x86-64) = 0.1.0-1.fc37.copr6665701 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-VAJointSurv-debugsource-0.1.0-1.fc37.copr6665701.x86_64 Provides: R-CRAN-VAJointSurv-debugsource = 0.1.0-1.fc37.copr6665701 R-CRAN-VAJointSurv-debugsource(x86-64) = 0.1.0-1.fc37.copr6665701 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-VAJointSurv-debuginfo-0.1.0-1.fc37.copr6665701.x86_64 Provides: R-CRAN-VAJointSurv-debuginfo = 0.1.0-1.fc37.copr6665701 R-CRAN-VAJointSurv-debuginfo(x86-64) = 0.1.0-1.fc37.copr6665701 debuginfo(build-id) = d97ccd8c07c027f822140af7b6e27d4b43900c02 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-VAJointSurv-debugsource(x86-64) = 0.1.0-1.fc37.copr6665701 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-VAJointSurv-debugsource-0.1.0-1.fc37.copr6665701.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-VAJointSurv-debuginfo-0.1.0-1.fc37.copr6665701.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.PGBFM8 + umask 022 + cd /builddir/build/BUILD + cd VAJointSurv + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.LCu7zw + umask 022 + cd /builddir/build/BUILD + rm -rf VAJointSurv VAJointSurv.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm Finish: build phase for R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.rpm.log /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.librepo.log /var/lib/mock/fedora-37-x86_64-1700321097.186716/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-VAJointSurv-0.1.0-1.fc37.copr6665701.src.rpm) Config(child) 3 minutes 50 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-VAJointSurv", "epoch": null, "version": "0.1.0", "release": "1.fc37.copr6665701", "arch": "x86_64" }, { "name": "R-CRAN-VAJointSurv", "epoch": null, "version": "0.1.0", "release": "1.fc37.copr6665701", "arch": "src" }, { "name": "R-CRAN-VAJointSurv-debugsource", "epoch": null, "version": "0.1.0", "release": "1.fc37.copr6665701", "arch": "x86_64" }, { "name": "R-CRAN-VAJointSurv-debuginfo", "epoch": null, "version": "0.1.0", "release": "1.fc37.copr6665701", "arch": "x86_64" } ] } RPMResults finished