tree_model_to_tracelog_xml {beautier} | R Documentation |
Creates the tree models' XML for the tracelog section. That is, all XML tags that have the word 'tree' in them.
tree_model_to_tracelog_xml(inference_model)
inference_model |
a Bayesian phylogenetic inference model. An inference model is the complete model setup in which a site model, clock model, tree prior and more are specified. Use create_inference_model to create an inference model. Use check_inference_model to check if an inference model is valid. Use rename_inference_model_filenames to rename the files in an inference model. |
lines of XML text
use site_models just because it contains all IDs
Richèl J.C. Bilderbeek
the complete tracelog section is created
by create_tracelog_xml
check_empty_beautier_folder()
# <logger id="tracelog" ...>
#' # Here
# </logger>
check_empty_beautier_folder()