getObservedSynthesisRateSet {AnaCoDa} | R Documentation |
getObservedSynthesisRateSet
returns the observed
synthesis rates of the genes within the genome specified.
getObservedSynthesisRateSet(genome, simulated = FALSE)
genome |
A genome object initialized with |
simulated |
A logical value denoting if the synthesis rates to be listed are simulated or not. The default value is FALSE. |
Returns a data.frame with the observed expression values in genome
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
expression_file <- system.file("extdata", "expression.csv", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)
## return expression values as a data.frame with gene ids in the first column.
expressionValues <- getObservedSynthesisRateSet(genome = genome)