Mock Version: 3.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-spBFA.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682175384.368928/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'efc1207fc9a1436fb2a85e0f1e575a19', '-D', '/var/lib/mock/fedora-38-x86_64-1682175384.368928/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-spBFA.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-spBFA-1.3-1.fc38.copr5824768.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-spBFA.spec'], chrootPath='/var/lib/mock/fedora-38-x86_64-1682175384.368928/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '754d222586774d339359e6dec5954f64', '-D', '/var/lib/mock/fedora-38-x86_64-1682175384.368928/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.mc_y3lj0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/R-CRAN-spBFA.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.7lyaUr + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf spBFA + /usr/bin/mkdir -p spBFA + cd spBFA + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/spBFA_1.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d spBFA/src ']' + find spBFA/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d spBFA/src ']' + find spBFA/src/Makevars spBFA/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.dEEoLV + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spBFA + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.oA9FL0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd spBFA + mkdir -p /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library spBFA * installing *source* package 'spBFA' ... file 'R/MCMC_Utilities.R' has the wrong MD5 checksum ** using staged installation ** libs using C++ compiler: 'g++ (GCC) 13.0.1 20230401 (Red Hat 13.0.1-0)' g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c CovarianceFunctions.cpp -o CovarianceFunctions.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c DIAG_Conversion.cpp -o DIAG_Conversion.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c DIAG_GetLogLik.cpp -o DIAG_GetLogLik.o DIAG_GetLogLik.cpp: In function 'arma::colvec GetLogLik(Rcpp::List, Rcpp::List, int, bool)': DIAG_GetLogLik.cpp:71:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 71 | for (arma::uword f = 0; f < O; f++) { | ~~^~~ DIAG_GetLogLik.cpp: In function 'double GetLogLikMean(Rcpp::List, Rcpp::List)': DIAG_GetLogLik.cpp:197:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 197 | for (arma::uword f = 0; f < O; f++) { | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c DIAG_SamplePPD.cpp -o DIAG_SamplePPD.o DIAG_SamplePPD.cpp: In function 'arma::mat SamplePPD(Rcpp::List, Rcpp::List, int, bool)': DIAG_SamplePPD.cpp:64:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 64 | for (arma::uword f = 0; f < O; f++) { | ~~^~~ DIAG_SamplePPD.cpp:91:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 91 | for (arma::uword t = 0; t < Nu; t++) { | ~~^~~~ DIAG_SamplePPD.cpp:92:37: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 92 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c DistributionFunctions.cpp -o DistributionFunctions.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from DistributionFunctions.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c MCMC_Conversion.cpp -o MCMC_Conversion.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c MCMC_Samplers.cpp -o MCMC_Samplers.o In file included from /usr/local/lib/R/library/RcppArmadillo/include/armadillo:26, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from /usr/local/lib/R/library/RcppArmadillo/include/RcppArmadillo.h:29, from MCMC_Samplers.cpp:2: /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ /usr/local/lib/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: '#pragma message: INFO: see the documentation for details' 346 | #pragma message ("INFO: see the documentation for details") | ^ MCMC_Samplers.cpp: In function 'datobj SampleUpper(datobj, para, dataug)': MCMC_Samplers.cpp:54:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 54 | for (arma::uword i = 0; i < NAbove; i++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'datobj SampleLower(datobj, para, dataug)': MCMC_Samplers.cpp:89:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 89 | for (arma::uword i = 0; i < NBelow; i++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'std::pair SampleY(datobj, para, dataug)': MCMC_Samplers.cpp:129:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 129 | for (arma::uword f = 0; f < O; f++) { | ~~^~~ MCMC_Samplers.cpp: In function 'para SampleSigma2(datobj, para, hypara)': MCMC_Samplers.cpp:193:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 193 | for (arma::uword c = 0; c < (O - C); c++) { | ~~^~~~~~~~~ MCMC_Samplers.cpp:199:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 199 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Samplers.cpp: In function 'para SampleBeta(datobj, para, hypara)': MCMC_Samplers.cpp:409:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 409 | for (arma::uword t = 0; t < Nu; t++) { | ~~^~~~ MCMC_Samplers.cpp: In function 'para SampleEta(datobj, para, hypara)': MCMC_Samplers.cpp:463:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 463 | for (arma::uword t = 0; t < Nu; t++) { | ~~^~~~ MCMC_Samplers.cpp: In function 'para SampleDelta(datobj, para, hypara)': MCMC_Samplers.cpp:526:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 526 | for (arma::uword h = 0; h < K; h++) { | ~~^~~ MCMC_Samplers.cpp:538:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 538 | for (arma::uword j = h; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:567:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 567 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp: In function 'std::pair SampleRho(datobj, para, hypara, metrobj)': MCMC_Samplers.cpp:673:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 673 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:680:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 680 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleKappa(datobj, para, hypara)': MCMC_Samplers.cpp:752:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 752 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:754:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 754 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleAlpha(datobj, para)': MCMC_Samplers.cpp:817:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 817 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:825:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 825 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp:883:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 883 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:893:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 893 | for (arma::uword t = 0; t < Nu; t++) { | ~~^~~~ MCMC_Samplers.cpp:898:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 898 | for (arma::uword h = 0; h < (K - 1); h++) LambdaSum += LambdaMinusJ.col(h) * BigPhiMinusJ(h, t); | ~~^~~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleZ(datobj, para)': MCMC_Samplers.cpp:950:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 950 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:958:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 958 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ MCMC_Samplers.cpp:961:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 961 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Samplers.cpp:968:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 968 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleXi(datobj, para)': MCMC_Samplers.cpp:1035:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1035 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:1044:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1044 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ MCMC_Samplers.cpp:1049:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1049 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Samplers.cpp:1061:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1061 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp:1110:43: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1110 | for (arma::uword seq = 0; seq < UpperL; seq++) SeqLStarJ(seq) = seq; | ~~~~^~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleTheta(datobj, para)': MCMC_Samplers.cpp:1171:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1171 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:1183:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1183 | for (arma::uword l = 0; l < UpperL; l++) { | ~~^~~~~~~~ MCMC_Samplers.cpp: In function 'para SampleU(datobj, para)': MCMC_Samplers.cpp:1251:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1251 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Samplers.cpp:1253:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1253 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ MCMC_Samplers.cpp:1254:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 1254 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Samplers.cpp: In function 'SampleZ(datobj, para)': MCMC_Samplers.cpp:974:22: warning: 'ZOIJL' may be used uninitialized [-Wmaybe-uninitialized] 974 | ZJ(l, Index) = ZOIJL; | ~~~~~~~~~~~~~^~~~~~~ MCMC_Samplers.cpp:971:16: note: 'ZOIJL' was declared here 971 | double ZOIJL; | ^~~~~ MCMC_Samplers.cpp: In function 'SampleDelta(datobj, para, hypara)': MCMC_Samplers.cpp:581:30: warning: 'tThetaTheta' may be used uninitialized [-Wmaybe-uninitialized] 581 | double Rate = A2 + 0.5 * tThetaTheta; | ~~~~^~~~~~~~~~~~~ MCMC_Samplers.cpp:571:14: note: 'tThetaTheta' was declared here 571 | double tThetaTheta; | ^~~~~~~~~~~ MCMC_Samplers.cpp:547:47: warning: 'tThetaTheta' may be used uninitialized [-Wmaybe-uninitialized] 547 | Resids += arma::as_scalar(tThetaTheta * arma::prod(DeltaMinusH(arma::span(0, j)))); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MCMC_Samplers.cpp:540:16: note: 'tThetaTheta' was declared here 540 | double tThetaTheta; | ^~~~~~~~~~~ MCMC_Samplers.cpp: In function 'SampleXi(datobj, para)': MCMC_Samplers.cpp:1115:22: warning: 'XiOIJ' may be used uninitialized [-Wmaybe-uninitialized] 1115 | Xi(Index, j) = XiOIJ; | ~~~~~~~~~~~~~^~~~~~~ MCMC_Samplers.cpp:1104:21: note: 'XiOIJ' was declared here 1104 | arma::uword XiOIJ; | ^~~~~ MCMC_Samplers.cpp: In function 'SampleTheta(datobj, para)': MCMC_Samplers.cpp:1213:19: warning: 'ThetaJL' may be used uninitialized [-Wmaybe-uninitialized] 1213 | Theta(l, j) = ThetaJL; | ~~~~~~~~~~~~^~~~~~~~~ MCMC_Samplers.cpp:1190:14: note: 'ThetaJL' was declared here 1190 | double ThetaJL; | ^~~~~~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c MCMC_Utilities.cpp -o MCMC_Utilities.o MCMC_Utilities.cpp: In function 'arma::colvec StoreSamples(datobj, para)': MCMC_Utilities.cpp:139:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 139 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ MCMC_Utilities.cpp:140:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 140 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Utilities.cpp:142:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 142 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Utilities.cpp:148:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 148 | for (arma::uword t = 0; t < Nu; t++) { | ~~^~~~ MCMC_Utilities.cpp:149:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 149 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Utilities.cpp:154:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 154 | for (arma::uword c = 0; c < (O - C); c++) { | ~~^~~~~~~~~ MCMC_Utilities.cpp:155:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 155 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Utilities.cpp:160:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 160 | for (arma::uword i = 0; i < O; i++) { | ~~^~~ MCMC_Utilities.cpp:166:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 166 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Utilities.cpp:170:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 170 | for (arma::uword i = 0; i < K; i++) { | ~~^~~ MCMC_Utilities.cpp:178:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 178 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ MCMC_Utilities.cpp:179:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 179 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ MCMC_Utilities.cpp:181:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 181 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ MCMC_Utilities.cpp:189:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 189 | for (arma::uword p = 0; p < P; p++) { | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c MCMC_bfa_sp.cpp -o MCMC_bfa_sp.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c PRED_Conversion.cpp -o PRED_Conversion.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c PRED_EtaKrigging.cpp -o PRED_EtaKrigging.o PRED_EtaKrigging.cpp: In function 'arma::mat EtaKrigging(Rcpp::List, Rcpp::List, int, bool)': PRED_EtaKrigging.cpp:50:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 50 | for (arma::uword s = 0; s < NKeep; s++) { | ~~^~~~~~~ PRED_EtaKrigging.cpp:56:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 56 | for (arma::uword i = 0; i < K; i++) { | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c PRED_YKrigging.cpp -o PRED_YKrigging.o PRED_YKrigging.cpp: In function 'arma::cube YKrigging(Rcpp::List, Rcpp::List, arma::mat, int, bool)': PRED_YKrigging.cpp:48:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 48 | for (arma::uword s = 0; s < NKeep; s++) { | ~~^~~~~~~ PRED_YKrigging.cpp:59:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 59 | for (arma::uword n = 0; n < NNewVisits; n++) { | ~~^~~~~~~~~~~~ PRED_YKrigging.cpp:67:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 67 | for (arma::uword f = 0; f < O; f++) { | ~~^~~ PRED_YKrigging.cpp:94:37: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 94 | for (arma::uword i = 0; i < M; i++) PredMat(i, f) = rbinomRcpp(TrialsVec(i), Pi(i)); | ~~^~~ g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c Play.cpp -o Play.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c UtilityFunctions.cpp -o UtilityFunctions.o UtilityFunctions.cpp: In function 'arma::colvec GetLStarJ(const arma::mat&, const arma::cube&, int, int, int)': UtilityFunctions.cpp:11:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 11 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp:14:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 14 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:15:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 15 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp: In function 'arma::mat GetLambda(const arma::mat&, const arma::umat&, int, int, int)': UtilityFunctions.cpp:33:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 33 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:34:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 34 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp:36:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 36 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp: In function 'arma::cube GetWeights(const arma::cube&, int, int, int, int)': UtilityFunctions.cpp:54:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 54 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp:55:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 55 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:56:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 56 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp:58:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 58 | for (arma::uword l = 0; l < L; l ++) { | ~~^~~ UtilityFunctions.cpp:64:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 64 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp:65:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 65 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:66:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 66 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp:68:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 68 | for (arma::uword l = 0; l < L; l ++) { | ~~^~~ UtilityFunctions.cpp: In function 'arma::cube GetlogWeights(const arma::cube&, int, int, int, int)': UtilityFunctions.cpp:87:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 87 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp:88:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 88 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:89:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 89 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp:91:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 91 | for (arma::uword l = 0; l < L; l ++) { | ~~^~~ UtilityFunctions.cpp:98:29: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 98 | for (arma::uword j = 0; j < K; j++) { | ~~^~~ UtilityFunctions.cpp:99:31: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 99 | for (arma::uword o = 0; o < O; o++) { | ~~^~~ UtilityFunctions.cpp:100:33: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 100 | for (arma::uword i = 0; i < M; i++) { | ~~^~~ UtilityFunctions.cpp:102:35: warning: comparison of integer expressions of different signedness: 'arma::uword' {aka 'unsigned int'} and 'int' [-Wsign-compare] 102 | for (arma::uword l = 0; l < L; l ++) { | ~~^~~ g++ -std=gnu++17 -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -fpic -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o spBFA.so CovarianceFunctions.o DIAG_Conversion.o DIAG_GetLogLik.o DIAG_SamplePPD.o DistributionFunctions.o MCMC_Conversion.o MCMC_Samplers.o MCMC_Utilities.o MCMC_bfa_sp.o PRED_Conversion.o PRED_EtaKrigging.o PRED_YKrigging.o Play.o RcppExports.o UtilityFunctions.o -lflexiblas -lflexiblas -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library/00LOCK-spBFA/00new/spBFA/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'spBFA' finding HTML links ... done bfa_sp html diagnostics html is.spBFA html predict.spBFA html reg.bfa_sp html spBFA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spBFA) + test -d spBFA/src + cd spBFA/src + rm -f CovarianceFunctions.o DIAG_Conversion.o DIAG_GetLogLik.o DIAG_SamplePPD.o DistributionFunctions.o MCMC_Conversion.o MCMC_Samplers.o MCMC_Utilities.o MCMC_bfa_sp.o PRED_Conversion.o PRED_EtaKrigging.o PRED_YKrigging.o Play.o RcppExports.o UtilityFunctions.o spBFA.so + rm -f /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.3-1.fc38.copr5824768 --unique-debug-suffix -1.3-1.fc38.copr5824768.x86_64 --unique-debug-src-base R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/spBFA extracting debug info from /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/usr/local/lib/R/library/spBFA/libs/spBFA.so original debug info size: 12096kB, size after compression: 9968kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 247 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/UtilityFunctions.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/PRED_predictions.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/PRED_YKrigging.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/PRED_EtaKrigging.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/PRED_Conversion.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/MCMC_bfa_sp.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/MCMC_bfa_sp.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/MCMC_Utilities.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/MCMC_Conversion.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/DistributionFunctions.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/DIAG_diagnostics.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/DIAG_SamplePPD.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/DIAG_GetLogLik.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/DIAG_Conversion.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64/spBFA/src/CovarianceFunctions.cpp is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 Provides: R-CRAN-spBFA = 1.3-1.fc38.copr5824768 R-CRAN-spBFA(x86-64) = 1.3-1.fc38.copr5824768 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-spBFA-debugsource-1.3-1.fc38.copr5824768.x86_64 Provides: R-CRAN-spBFA-debugsource = 1.3-1.fc38.copr5824768 R-CRAN-spBFA-debugsource(x86-64) = 1.3-1.fc38.copr5824768 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-spBFA-debuginfo-1.3-1.fc38.copr5824768.x86_64 Provides: R-CRAN-spBFA-debuginfo = 1.3-1.fc38.copr5824768 R-CRAN-spBFA-debuginfo(x86-64) = 1.3-1.fc38.copr5824768 debuginfo(build-id) = 4964521b201ff1ec6c104d221563bcc80c43719b Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-spBFA-debugsource(x86-64) = 1.3-1.fc38.copr5824768 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spBFA-debugsource-1.3-1.fc38.copr5824768.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-spBFA-debuginfo-1.3-1.fc38.copr5824768.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.tcJFUD + umask 022 + cd /builddir/build/BUILD + cd spBFA + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-spBFA-1.3-1.fc38.copr5824768.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Vgant5 + umask 022 + cd /builddir/build/BUILD + rm -rf spBFA spBFA.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Child return code was: 0