negll {vanquish} | R Documentation |
Calculates negative log likelihood for beta binomial distribution.
negll(x, size, prob, rho)
x |
Depth of alternative allele |
size |
Total depth |
prob |
Theoretical probability for heterozygous is 0.5, for homozygous is 0.999 |
rho |
Rho parameter of Beta-Binomial distribution of alternative allele |