getAvgLL {vanquish} | R Documentation |
Calculate average log-likelihood
getAvgLL(df, hom_mle, het_mle, hom_rho, het_rho)
df |
Input modified file |
hom_mle |
Hom MLE of p in Beta-Binomial model, default is 0.9981416 from NA12878_1_L5 |
het_mle |
Het MLE of p in Beta-Binomial model, default is 0.4737897 from NA12878_1_L5 |
hom_rho |
Hom MLE of rho in Beta-Binomial model, default is 0.04570275 from NA12878_1_L5 |
het_rho |
Het MLE of rho in Beta-Binomial model, default is 0.02224098 from NA12878_1_L5 |
meanLL