getRefCor {deltaccd} | R Documentation |
The pan-tissue reference matrix is based on a fixed-effects meta-analysis of eight circadian transcriptome datasets from mice, as described in Shilts et al. 2018(doi: 10.7717/peerj.4327). The human blood reference matrix is based an analysis of three microarray datasets (manuscript in preparation).
getRefCor(
species = c("human", "mouse"),
tissue = c("pan", "blood"),
useEntrezGeneId = TRUE
)
species |
Currently either 'human' or 'mouse'. Only affects the row and column names of the correlation matrix, not the actual values. |
tissue |
One of either 'pan' or 'blood'. |
useEntrezGeneId |
If |
A matrix of Spearman correlation values.
GSE19188, plotRefHeatmap()
, calcCCD()
, calcDeltaCCD()