%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  lcc
%global packver   1.1.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.4
Release:          1%{?dist}%{?buildtag}
Summary:          Longitudinal Concordance Correlation

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.2.3
Requires:         R-core >= 3.2.3
BuildArch:        noarch
BuildRequires:    R-CRAN-nlme >= 3.1.124
BuildRequires:    R-CRAN-ggplot2 >= 2.2.1
BuildRequires:    R-CRAN-hnp 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-doSNOW 
BuildRequires:    R-CRAN-doRNG 
BuildRequires:    R-CRAN-foreach 
Requires:         R-CRAN-nlme >= 3.1.124
Requires:         R-CRAN-ggplot2 >= 2.2.1
Requires:         R-CRAN-hnp 
Requires:         R-parallel 
Requires:         R-CRAN-doSNOW 
Requires:         R-CRAN-doRNG 
Requires:         R-CRAN-foreach 

%description
Estimates the longitudinal concordance correlation to access the
longitudinal agreement profile. The estimation approach implemented is
variance components approach based on polynomial mixed effects regression
model, as proposed by Oliveira, Hinde and Zocchi (2018)
<doi:10.1007/s13253-018-0321-1>.  In addition, non-parametric confidence
intervals were implemented using percentile method or normal-approximation
based on Fisher Z-transformation.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}