%global __brp_check_rpaths %{nil}
%global packname  BioCircos
%global packver   0.3.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.3.4
Release:          1%{?dist}%{?buildtag}
Summary:          Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js'

License:          GPL-2 | file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.1.0
Requires:         R-core >= 3.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-RColorBrewer 
BuildRequires:    R-CRAN-htmlwidgets 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-grDevices 
Requires:         R-CRAN-RColorBrewer 
Requires:         R-CRAN-htmlwidgets 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-plyr 
Requires:         R-grDevices 

%description
Implement in 'R' interactive Circos-like visualizations of genomic data,
to map information such as genetic variants, genomic fusions and
aberrations to a circular genome, as proposed by the 'JavaScript' library
'BioCircos.js', based on the 'JQuery' and 'D3' technologies. The output is
by default displayed in stand-alone HTML documents or in the 'RStudio'
viewer pane. Moreover it can be integrated in 'R Markdown' documents and
'Shiny' applications.

%prep
%setup -q -c -n %{packname}

find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}