Gst_Hedrick {mmod} | R Documentation |
This function calculates Hedrick's G'st from a genind object
Gst_Hedrick(x)
x |
genind object (from package adegenet) |
Takes a genind object with population information and calculates Hedrick's G”st.
Because estimators of Hs and Ht are used, it's possible to have negative estimates of G”st. You should treat such results as zeros (or an attempt to estimate a very low number with some error which might push it below zero)
per.locus values for each G”st for each locus in the dataset
global estimtes for G”st based on overall heterozygosity
Hedrick, PW. (2005), A Standardized Genetic Differentiation Measure. Evolution 59: 1633-1638.
Meirmans PG, Hedrick PW (2011), Assessing population structure: FST and related measures. Molecular Ecology Resources, 11:5-18
Other diffstat: D_Jost
,
Gst_Nei
, Phi_st_Meirmans
,
diff_stats
Other Hedrick: pairwise_Gst_Hedrick
data(nancycats)
Gst_Hedrick(nancycats)