%global __brp_check_rpaths %{nil}
%global packname  habCluster
%global packver   1.0.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.5
Release:          1%{?dist}%{?buildtag}
Summary:          Detecting Spatial Clustering Based on Connection Cost Between Grids

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildRequires:    R-CRAN-igraph >= 1.3.0
BuildRequires:    R-CRAN-sf >= 1.0.0
BuildRequires:    R-CRAN-stars >= 0.5.0
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-raster 
Requires:         R-CRAN-igraph >= 1.3.0
Requires:         R-CRAN-sf >= 1.0.0
Requires:         R-CRAN-stars >= 0.5.0
Requires:         R-methods 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-raster 

%description
Based on landscape connectivity, spatial boundaries were identified using
community detection algorithm at grid level. Methods using raster as input
and the value of each cell of the raster is the "smoothness" to indicate
how easy the cell connecting with neighbor cells. Details about the
'habCluster' package methods can be found in Zhang et al.
<bioRxiv:2022.05.06.490926>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}