%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  stochLAB
%global packver   1.1.2
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.1.2
Release:          1%{?dist}%{?buildtag}
Summary:          Stochastic Collision Risk Model

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.0
Requires:         R-core >= 4.0
BuildArch:        noarch
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-glue 
BuildRequires:    R-CRAN-logr 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-msm 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-rlang 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-tibble 
BuildRequires:    R-CRAN-tidyr 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-glue 
Requires:         R-CRAN-logr 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-msm 
Requires:         R-CRAN-pracma 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-rlang 
Requires:         R-stats 
Requires:         R-CRAN-tibble 
Requires:         R-CRAN-tidyr 

%description
Collision Risk Models for avian fauna (seabird and migratory birds) at
offshore wind farms. The base deterministic model is derived from Band
(2012)
<https://tethys.pnnl.gov/publications/using-collision-risk-model-assess-bird-collision-risks-offshore-wind-farms>.
This was further expanded on by Masden (2015) <doi:10.7489/1659-1> and
code used here is heavily derived from this work with input from Dr A.
Cook at the British Trust for Ornithology. These collision risk models are
useful for marine ornithologists who are working in the offshore wind
industry, particularly in UK waters. However, many of the species included
in the stochastic collision risk models can also be found in the North
Atlantic in the United States and Canada, and could be applied there.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}