scan_eb_negbin_cpp {scanstatistics} | R Documentation |
Calculate the expectation-based negative binomial scan statistic and Monte Carlo replicates.
scan_eb_negbin_cpp(
counts,
baselines,
overdisp,
zones,
zone_lengths,
store_everything,
num_mcsim,
score_hotspot
)
counts |
Integer matrix (most recent timepoint in first row) |
baselines |
Matrix (most recent timepoint in first row) |
overdisp |
Matrix (most recent timepoint in first row) |
zones |
Integer vector (all zones concatenated; locations indexed from 0 and up) |
zone_lengths |
Integer vector |
store_everything |
Boolean |
num_mcsim |
Integer |
score_hotspot |
Boolean |
A list with elements observed
and simulated
, each
being a data frame with columns:
The top-scoring zone (spatial component of MLC).
The corresponding duration (time-length of MLC).
The value of the loglihood ratio statistic (the scan statistic).
The estimated relative risk.
The number of iterations performed by the EM algorithm.