Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1da' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5832313 --chroot fedora-38-x86_64 --detached Version: 0.64 PID: 8809 Logging PID: 8810 Task: {'appstream': False, 'background': True, 'bootstrap': 'off', 'build_id': 5832313, 'buildroot_pkgs': [], 'chroot': 'fedora-38-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'f17d5a2e6d32105230b67f5832a1abd863988d7b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-GenomeAdmixR', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-CRAN-GenomeAdmixR', 'package_version': '2.1.7-1.copr5832313', 'project_dirname': 'cran', 'project_name': 'cran', 'project_owner': 'iucar', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/iucar/cran/fedora-38-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'iucar/cran--iucar', 'source_json': {}, 'source_type': None, 'submitter': 'iucar', 'tags': [], 'task_id': '5832313-fedora-38-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-GenomeAdmixR /var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/iucar/cran/R-CRAN-GenomeAdmixR', '/var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR'... Running: git checkout f17d5a2e6d32105230b67f5832a1abd863988d7b cmd: ['git', 'checkout', 'f17d5a2e6d32105230b67f5832a1abd863988d7b'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR rc: 0 stdout: stderr: Note: switching to 'f17d5a2e6d32105230b67f5832a1abd863988d7b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at f17d5a2 automatic import of R-CRAN-GenomeAdmixR Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncatedcwd: /var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading GenomeAdmixR_2.1.7.tar.gz INFO: Calling: curl -H Pragma: -o GenomeAdmixR_2.1.7.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/iucar/cran/R-CRAN-GenomeAdmixR/GenomeAdmixR_2.1.7.tar.gz/md5/91d3d272d9f60beca93760f6d7ddf810/GenomeAdmixR_2.1.7.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1437k 100 1437k 0 0 2880k 0 --:--:-- --:--:-- --:--:-- 2880k INFO: Reading stdout from command: md5sum GenomeAdmixR_2.1.7.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR/R-CRAN-GenomeAdmixR.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1682241179.294558 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR/R-CRAN-GenomeAdmixR.spec) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1682241179.294558/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 16 kB/s | 1.5 kB 00:00 Copr repository 6.9 MB/s | 45 MB 00:06 fedora 403 kB/s | 22 kB 00:00 updates 395 kB/s | 18 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.1-11.fc38 fedora 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.9-1.fc38 fedora 397 k fedora-release-common noarch 38-34 fedora 22 k findutils x86_64 1:4.9.0-3.fc38 fedora 492 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37-1.fc38 fedora 35 k grep x86_64 3.8-3.fc38 fedora 293 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.2-2.fc38 fedora 181 k patch x86_64 2.7.6-19.fc38 fedora 126 k redhat-rpm-config noarch 252-1.fc38 fedora 83 k rpm-build x86_64 4.18.1-1.fc38 fedora 76 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc38 fedora 1.3 M tar x86_64 2:1.34-8.fc38 fedora 889 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.38.1-4.fc38 fedora 2.3 M which x86_64 2.21-39.fc38 fedora 42 k xz x86_64 5.4.1-1.fc38 fedora 419 k Installing dependencies: alternatives x86_64 1.22-1.fc38 fedora 38 k ansible-srpm-macros noarch 1-9.1.fc38 fedora 8.8 k audit-libs x86_64 3.1-2.fc38 fedora 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.39-9.fc38 fedora 5.4 M binutils-gold x86_64 2.39-9.fc38 fedora 784 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.1-11.fc38 fedora 2.0 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230301-1.gita12f7b2.fc38 fedora 93 k curl x86_64 7.87.0-7.fc38 fedora 347 k cyrus-sasl-lib x86_64 2.1.28-9.fc38 fedora 794 k debugedit x86_64 5.0-7.fc38 fedora 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.189-1.fc38 fedora 536 k elfutils-debuginfod-client x86_64 0.189-1.fc38 fedora 39 k elfutils-default-yama-scope noarch 0.189-1.fc38 fedora 15 k elfutils-libelf x86_64 0.189-1.fc38 fedora 196 k elfutils-libs x86_64 0.189-1.fc38 fedora 260 k fedora-gpg-keys noarch 38-1 fedora 126 k fedora-release noarch 38-34 fedora 12 k fedora-release-identity-basic noarch 38-34 fedora 13 k fedora-repos noarch 38-1 fedora 9.1 k file x86_64 5.44-3.fc38 fedora 49 k file-libs x86_64 5.44-3.fc38 fedora 730 k filesystem x86_64 3.18-3.fc38 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.1-3.fc38 updates 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37-1.fc38 fedora 2.1 M glibc-common x86_64 2.37-1.fc38 fedora 313 k glibc-gconv-extra x86_64 2.37-1.fc38 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-2.fc38 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-16.fc38 fedora 9.3 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-8.fc38 fedora 727 k libacl x86_64 2.3.1-6.fc38 fedora 23 k libarchive x86_64 3.6.1-4.fc38 fedora 400 k libattr x86_64 2.5.1-6.fc38 fedora 18 k libblkid x86_64 2.38.1-4.fc38 fedora 106 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 7.87.0-7.fc38 fedora 304 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.38.1-4.fc38 fedora 161 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.0.1-0.12.fc38 fedora 104 k libgomp x86_64 13.0.1-0.12.fc38 fedora 313 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.38.1-4.fc38 fedora 135 k libnghttp2 x86_64 1.52.0-1.fc38 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.8.0-6.fc38 fedora 35 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc38 fedora 87 k libsemanage x86_64 3.5-2.fc38 fedora 120 k libsepol x86_64 3.5-1.fc38 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.38.1-4.fc38 fedora 64 k libssh x86_64 0.10.4-4.fc38 fedora 209 k libssh-config noarch 0.10.4-4.fc38 fedora 8.9 k libstdc++ x86_64 13.0.1-0.12.fc38 fedora 858 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.fc38 fedora 94 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-8.fc38 fedora 26 k libuuid x86_64 2.38.1-4.fc38 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.33-7.fc38 fedora 120 k libxml2 x86_64 2.10.4-1.fc38 updates 701 k libzstd x86_64 1.5.5-1.fc38 updates 308 k lua-libs x86_64 5.4.4-9.fc38 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-2.fc38 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-1.fc38 fedora 254 k openssl-libs x86_64 1:3.0.8-2.fc38 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-7.fc38 fedora 11 k pam x86_64 1.5.2-16.fc38 fedora 560 k pam-libs x86_64 1.5.2-16.fc38 fedora 58 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.8.0-6.fc38 fedora 41 k pkgconf-m4 noarch 1.8.0-6.fc38 fedora 14 k pkgconf-pkg-config x86_64 1.8.0-6.fc38 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc38 fedora 60 k pyproject-srpm-macros noarch 1.6.3-1.fc38 fedora 14 k python-srpm-macros noarch 3.11-10.fc38 fedora 26 k qt5-srpm-macros noarch 5.15.9-1.fc38 updates 8.1 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-1.fc38 fedora 571 k rpm-build-libs x86_64 4.18.1-1.fc38 fedora 94 k rpm-libs x86_64 4.18.1-1.fc38 fedora 313 k rpm-sequoia x86_64 1.4.0-1.fc38 updates 851 k rpmautospec-rpm-macros noarch 0.3.5-1.fc38 fedora 9.3 k rust-srpm-macros noarch 24-1.fc38 fedora 12 k setup noarch 2.14.3-2.fc38 fedora 152 k sqlite-libs x86_64 3.40.1-2.fc38 fedora 666 k systemd-libs x86_64 253.2-1.fc38 fedora 654 k tzdata noarch 2023c-1.fc38 fedora 718 k util-linux-core x86_64 2.38.1-4.fc38 fedora 473 k xxhash-libs x86_64 0.8.1-4.fc38 fedora 40 k xz-libs x86_64 5.4.1-1.fc38 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc38 updates 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 151 Packages Total size: 53 M Installed size: 183 M Downloading Packages: [SKIPPED] alternatives-1.22-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-9.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-15.fc38.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.39-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-9.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-13.fc38.x86_64.rpm: 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[SKIPPED] qt5-srpm-macros-5.15.9-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.4.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-1.fc38.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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cracklib-2.9.7-31.fc38.x86_64 16/151 Verifying : crypto-policies-20230301-1.gita12f7b2.fc38.noarc 17/151 Verifying : curl-7.87.0-7.fc38.x86_64 18/151 Verifying : cyrus-sasl-lib-2.1.28-9.fc38.x86_64 19/151 Verifying : debugedit-5.0-7.fc38.x86_64 20/151 Verifying : diffutils-3.9-1.fc38.x86_64 21/151 Verifying : dwz-0.15-2.fc38.x86_64 22/151 Verifying : ed-1.19-2.fc38.x86_64 23/151 Verifying : efi-srpm-macros-5-7.fc38.noarch 24/151 Verifying : elfutils-0.189-1.fc38.x86_64 25/151 Verifying : elfutils-debuginfod-client-0.189-1.fc38.x86_64 26/151 Verifying : elfutils-default-yama-scope-0.189-1.fc38.noarch 27/151 Verifying : elfutils-libelf-0.189-1.fc38.x86_64 28/151 Verifying : elfutils-libs-0.189-1.fc38.x86_64 29/151 Verifying : fedora-gpg-keys-38-1.noarch 30/151 Verifying : fedora-release-38-34.noarch 31/151 Verifying : fedora-release-common-38-34.noarch 32/151 Verifying : fedora-release-identity-basic-38-34.noarch 33/151 Verifying : fedora-repos-38-1.noarch 34/151 Verifying : file-5.44-3.fc38.x86_64 35/151 Verifying : file-libs-5.44-3.fc38.x86_64 36/151 Verifying : filesystem-3.18-3.fc38.x86_64 37/151 Verifying : findutils-1:4.9.0-3.fc38.x86_64 38/151 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 39/151 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 40/151 Verifying : gawk-5.1.1-5.fc38.x86_64 41/151 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 42/151 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 43/151 Verifying : glibc-2.37-1.fc38.x86_64 44/151 Verifying : glibc-common-2.37-1.fc38.x86_64 45/151 Verifying : glibc-gconv-extra-2.37-1.fc38.x86_64 46/151 Verifying : glibc-minimal-langpack-2.37-1.fc38.x86_64 47/151 Verifying : gmp-1:6.2.1-4.fc38.x86_64 48/151 Verifying : gnat-srpm-macros-6-2.fc38.noarch 49/151 Verifying : go-srpm-macros-3.2.0-2.fc38.noarch 50/151 Verifying : grep-3.8-3.fc38.x86_64 51/151 Verifying : gzip-1.12-3.fc38.x86_64 52/151 Verifying : info-7.0.2-2.fc38.x86_64 53/151 Verifying : jansson-2.13.1-6.fc38.x86_64 54/151 Verifying : kernel-srpm-macros-1.0-16.fc38.noarch 55/151 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 56/151 Verifying : krb5-libs-1.20.1-8.fc38.x86_64 57/151 Verifying : libacl-2.3.1-6.fc38.x86_64 58/151 Verifying : libarchive-3.6.1-4.fc38.x86_64 59/151 Verifying : libattr-2.5.1-6.fc38.x86_64 60/151 Verifying : libblkid-2.38.1-4.fc38.x86_64 61/151 Verifying : libbrotli-1.0.9-11.fc38.x86_64 62/151 Verifying : libcap-2.48-6.fc38.x86_64 63/151 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 64/151 Verifying : libcom_err-1.46.5-4.fc38.x86_64 65/151 Verifying : libcurl-7.87.0-7.fc38.x86_64 66/151 Verifying : libdb-5.3.28-55.fc38.x86_64 67/151 Verifying : libeconf-0.4.0-5.fc38.x86_64 68/151 Verifying : libevent-2.1.12-8.fc38.x86_64 69/151 Verifying : libfdisk-2.38.1-4.fc38.x86_64 70/151 Verifying : libffi-3.4.4-2.fc38.x86_64 71/151 Verifying : libgcc-13.0.1-0.12.fc38.x86_64 72/151 Verifying : libgomp-13.0.1-0.12.fc38.x86_64 73/151 Verifying : libidn2-2.3.4-2.fc38.x86_64 74/151 Verifying : libmount-2.38.1-4.fc38.x86_64 75/151 Verifying : libnghttp2-1.52.0-1.fc38.x86_64 76/151 Verifying : libnsl2-2.0.0-5.fc38.x86_64 77/151 Verifying : libpkgconf-1.8.0-6.fc38.x86_64 78/151 Verifying : libpsl-0.21.2-2.fc38.x86_64 79/151 Verifying : libpwquality-1.4.5-3.fc38.x86_64 80/151 Verifying : libselinux-3.5-1.fc38.x86_64 81/151 Verifying : libsemanage-3.5-2.fc38.x86_64 82/151 Verifying : libsepol-3.5-1.fc38.x86_64 83/151 Verifying : libsigsegv-2.14-4.fc38.x86_64 84/151 Verifying : libsmartcols-2.38.1-4.fc38.x86_64 85/151 Verifying : libssh-0.10.4-4.fc38.x86_64 86/151 Verifying : libssh-config-0.10.4-4.fc38.noarch 87/151 Verifying : libstdc++-13.0.1-0.12.fc38.x86_64 88/151 Verifying : libtasn1-4.19.0-2.fc38.x86_64 89/151 Verifying : libtirpc-1.3.3-1.fc38.x86_64 90/151 Verifying : libunistring1.0-1.0-1.fc38.x86_64 91/151 Verifying : libutempter-1.2.1-8.fc38.x86_64 92/151 Verifying : libuuid-2.38.1-4.fc38.x86_64 93/151 Verifying : libverto-0.3.2-5.fc38.x86_64 94/151 Verifying : libxcrypt-4.4.33-7.fc38.x86_64 95/151 Verifying : lua-libs-5.4.4-9.fc38.x86_64 96/151 Verifying : lua-srpm-macros-1-8.fc38.noarch 97/151 Verifying : lz4-libs-1.9.4-2.fc38.x86_64 98/151 Verifying : mpfr-4.1.1-3.fc38.x86_64 99/151 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 100/151 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 101/151 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 102/151 Verifying : openblas-srpm-macros-2-13.fc38.noarch 103/151 Verifying : openldap-2.6.4-1.fc38.x86_64 104/151 Verifying : openssl-libs-1:3.0.8-2.fc38.x86_64 105/151 Verifying : p11-kit-0.24.1-6.fc38.x86_64 106/151 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 107/151 Verifying : package-notes-srpm-macros-0.5-7.fc38.noarch 108/151 Verifying : pam-1.5.2-16.fc38.x86_64 109/151 Verifying : pam-libs-1.5.2-16.fc38.x86_64 110/151 Verifying : patch-2.7.6-19.fc38.x86_64 111/151 Verifying : pcre2-10.42-1.fc38.1.x86_64 112/151 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 113/151 Verifying : perl-srpm-macros-1-48.fc38.noarch 114/151 Verifying : pkgconf-1.8.0-6.fc38.x86_64 115/151 Verifying : pkgconf-m4-1.8.0-6.fc38.noarch 116/151 Verifying : pkgconf-pkg-config-1.8.0-6.fc38.x86_64 117/151 Verifying : popt-1.19-2.fc38.x86_64 118/151 Verifying : publicsuffix-list-dafsa-20230318-1.fc38.noarch 119/151 Verifying : pyproject-srpm-macros-1.6.3-1.fc38.noarch 120/151 Verifying : python-srpm-macros-3.11-10.fc38.noarch 121/151 Verifying : readline-8.2-3.fc38.x86_64 122/151 Verifying : redhat-rpm-config-252-1.fc38.noarch 123/151 Verifying : rpm-4.18.1-1.fc38.x86_64 124/151 Verifying : rpm-build-4.18.1-1.fc38.x86_64 125/151 Verifying : rpm-build-libs-4.18.1-1.fc38.x86_64 126/151 Verifying : rpm-libs-4.18.1-1.fc38.x86_64 127/151 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 128/151 Verifying : rust-srpm-macros-24-1.fc38.noarch 129/151 Verifying : sed-4.8-12.fc38.x86_64 130/151 Verifying : setup-2.14.3-2.fc38.noarch 131/151 Verifying : shadow-utils-2:4.13-6.fc38.x86_64 132/151 Verifying : sqlite-libs-3.40.1-2.fc38.x86_64 133/151 Verifying : systemd-libs-253.2-1.fc38.x86_64 134/151 Verifying : tar-2:1.34-8.fc38.x86_64 135/151 Verifying : tzdata-2023c-1.fc38.noarch 136/151 Verifying : unzip-6.0-60.fc38.x86_64 137/151 Verifying : util-linux-2.38.1-4.fc38.x86_64 138/151 Verifying : util-linux-core-2.38.1-4.fc38.x86_64 139/151 Verifying : which-2.21-39.fc38.x86_64 140/151 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 141/151 Verifying : xz-5.4.1-1.fc38.x86_64 142/151 Verifying : xz-libs-5.4.1-1.fc38.x86_64 143/151 Verifying : zip-3.0-36.fc38.x86_64 144/151 Verifying : zlib-1.2.13-3.fc38.x86_64 145/151 Verifying : gdb-minimal-13.1-3.fc38.x86_64 146/151 Verifying : libxml2-2.10.4-1.fc38.x86_64 147/151 Verifying : libzstd-1.5.5-1.fc38.x86_64 148/151 Verifying : qt5-srpm-macros-5.15.9-1.fc38.noarch 149/151 Verifying : rpm-sequoia-1.4.0-1.fc38.x86_64 150/151 Verifying : zstd-1.5.5-1.fc38.x86_64 151/151 Installed products updated. Installed: alternatives-1.22-1.fc38.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch audit-libs-3.1-2.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.39-9.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.1-11.fc38.x86_64 coreutils-common-9.1-11.fc38.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230301-1.gita12f7b2.fc38.noarch curl-7.87.0-7.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.9-1.fc38.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-1.fc38.x86_64 elfutils-debuginfod-client-0.189-1.fc38.x86_64 elfutils-default-yama-scope-0.189-1.fc38.noarch elfutils-libelf-0.189-1.fc38.x86_64 elfutils-libs-0.189-1.fc38.x86_64 fedora-gpg-keys-38-1.noarch fedora-release-38-34.noarch fedora-release-common-38-34.noarch fedora-release-identity-basic-38-34.noarch fedora-repos-38-1.noarch file-5.44-3.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 findutils-1:4.9.0-3.fc38.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.1-3.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37-1.fc38.x86_64 glibc-common-2.37-1.fc38.x86_64 glibc-gconv-extra-2.37-1.fc38.x86_64 glibc-minimal-langpack-2.37-1.fc38.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-2.fc38.noarch grep-3.8-3.fc38.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-7.87.0-7.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.38.1-4.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.0.1-0.12.fc38.x86_64 libgomp-13.0.1-0.12.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.38.1-4.fc38.x86_64 libssh-0.10.4-4.fc38.x86_64 libssh-config-0.10.4-4.fc38.noarch libstdc++-13.0.1-0.12.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc38.x86_64 libxml2-2.10.4-1.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-2.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-1.fc38.x86_64 openssl-libs-1:3.0.8-2.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.8.0-6.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch pkgconf-pkg-config-1.8.0-6.fc38.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc38.noarch pyproject-srpm-macros-1.6.3-1.fc38.noarch python-srpm-macros-3.11-10.fc38.noarch qt5-srpm-macros-5.15.9-1.fc38.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch rpm-4.18.1-1.fc38.x86_64 rpm-build-4.18.1-1.fc38.x86_64 rpm-build-libs-4.18.1-1.fc38.x86_64 rpm-libs-4.18.1-1.fc38.x86_64 rpm-sequoia-1.4.0-1.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch rust-srpm-macros-24-1.fc38.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-2.fc38.noarch shadow-utils-2:4.13-6.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 systemd-libs-253.2-1.fc38.x86_64 tar-2:1.34-8.fc38.x86_64 tzdata-2023c-1.fc38.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 which-2.21-39.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.1-1.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: ncurses-base-6.4-3.20230114.fc38.noarch fedora-gpg-keys-38-1.noarch keyutils-libs-1.6.1-6.fc38.x86_64 curl-7.87.0-7.fc38.x86_64 libattr-2.5.1-6.fc38.x86_64 audit-libs-3.1-2.fc38.x86_64 elfutils-libelf-0.189-1.fc38.x86_64 ansible-srpm-macros-1-9.1.fc38.noarch libsigsegv-2.14-4.fc38.x86_64 go-srpm-macros-3.2.0-2.fc38.noarch libtasn1-4.19.0-2.fc38.x86_64 openblas-srpm-macros-2-13.fc38.noarch elfutils-libs-0.189-1.fc38.x86_64 cyrus-sasl-lib-2.1.28-9.fc38.x86_64 filesystem-3.18-3.fc38.x86_64 libselinux-3.5-1.fc38.x86_64 libacl-2.3.1-6.fc38.x86_64 pkgconf-1.8.0-6.fc38.x86_64 lz4-libs-1.9.4-2.fc38.x86_64 zstd-1.5.5-1.fc38.x86_64 openssl-libs-3.0.8-2.fc38.x86_64 tar-1.34-8.fc38.x86_64 libuuid-2.38.1-4.fc38.x86_64 libcurl-7.87.0-7.fc38.x86_64 cpio-2.13-14.fc38.x86_64 debugedit-5.0-7.fc38.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch rpm-sequoia-1.4.0-1.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 coreutils-common-9.1-11.fc38.x86_64 kernel-srpm-macros-1.0-16.fc38.noarch readline-8.2-3.fc38.x86_64 gawk-5.1.1-5.fc38.x86_64 rpm-build-4.18.1-1.fc38.x86_64 libpkgconf-1.8.0-6.fc38.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc38.noarch libxml2-2.10.4-1.fc38.x86_64 libnghttp2-1.52.0-1.fc38.x86_64 pyproject-srpm-macros-1.6.3-1.fc38.noarch cracklib-2.9.7-31.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 python-srpm-macros-3.11-10.fc38.noarch pam-1.5.2-16.fc38.x86_64 pam-libs-1.5.2-16.fc38.x86_64 tzdata-2023c-1.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 libtirpc-1.3.3-1.fc38.x86_64 gzip-1.12-3.fc38.x86_64 elfutils-0.189-1.fc38.x86_64 binutils-gold-2.39-9.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 shadow-utils-4.13-6.fc38.x86_64 binutils-2.39-9.fc38.x86_64 gmp-6.2.1-4.fc38.x86_64 xz-libs-5.4.1-1.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 glibc-gconv-extra-2.37-1.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch libsmartcols-2.38.1-4.fc38.x86_64 glibc-2.37-1.fc38.x86_64 libdb-5.3.28-55.fc38.x86_64 bash-5.2.15-3.fc38.x86_64 util-linux-2.38.1-4.fc38.x86_64 coreutils-9.1-11.fc38.x86_64 gdb-minimal-13.1-3.fc38.x86_64 rpm-build-libs-4.18.1-1.fc38.x86_64 info-7.0.2-2.fc38.x86_64 libzstd-1.5.5-1.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 libsepol-3.5-1.fc38.x86_64 redhat-rpm-config-252-1.fc38.noarch libcap-ng-0.8.3-5.fc38.x86_64 libssh-config-0.10.4-4.fc38.noarch pcre2-syntax-10.42-1.fc38.1.noarch sed-4.8-12.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 gpg-pubkey-eb10b464-6202d9c6 systemd-libs-253.2-1.fc38.x86_64 glibc-minimal-langpack-2.37-1.fc38.x86_64 findutils-4.9.0-3.fc38.x86_64 file-5.44-3.fc38.x86_64 libarchive-3.6.1-4.fc38.x86_64 libcap-2.48-6.fc38.x86_64 zip-3.0-36.fc38.x86_64 libssh-0.10.4-4.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 fedora-repos-38-1.noarch authselect-libs-1.4.2-2.fc38.x86_64 libgcc-13.0.1-0.12.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 libxcrypt-4.4.33-7.fc38.x86_64 rust-srpm-macros-24-1.fc38.noarch ghc-srpm-macros-1.6.1-1.fc38.noarch elfutils-default-yama-scope-0.189-1.fc38.noarch zlib-1.2.13-3.fc38.x86_64 diffutils-3.9-1.fc38.x86_64 libidn2-2.3.4-2.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch jansson-2.13.1-6.fc38.x86_64 libnsl2-2.0.0-5.fc38.x86_64 fedora-release-38-34.noarch xz-5.4.1-1.fc38.x86_64 elfutils-debuginfod-client-0.189-1.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch efi-srpm-macros-5-7.fc38.noarch libfdisk-2.38.1-4.fc38.x86_64 lua-srpm-macros-1-8.fc38.noarch fonts-srpm-macros-2.0.5-11.fc38.noarch bzip2-1.0.8-13.fc38.x86_64 libverto-0.3.2-5.fc38.x86_64 krb5-libs-1.20.1-8.fc38.x86_64 rpm-libs-4.18.1-1.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libsemanage-3.5-2.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 popt-1.19-2.fc38.x86_64 dwz-0.15-2.fc38.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch crypto-policies-20230301-1.gita12f7b2.fc38.noarch authselect-1.4.2-2.fc38.x86_64 fedora-release-identity-basic-38-34.noarch setup-2.14.3-2.fc38.noarch alternatives-1.22-1.fc38.x86_64 which-2.21-39.fc38.x86_64 qt5-srpm-macros-5.15.9-1.fc38.noarch libstdc++-13.0.1-0.12.fc38.x86_64 file-libs-5.44-3.fc38.x86_64 libgomp-13.0.1-0.12.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch rpm-4.18.1-1.fc38.x86_64 package-notes-srpm-macros-0.5-7.fc38.noarch glibc-common-2.37-1.fc38.x86_64 ed-1.19-2.fc38.x86_64 lua-libs-5.4.4-9.fc38.x86_64 sqlite-libs-3.40.1-2.fc38.x86_64 libblkid-2.38.1-4.fc38.x86_64 util-linux-core-2.38.1-4.fc38.x86_64 openldap-2.6.4-1.fc38.x86_64 pkgconf-m4-1.8.0-6.fc38.noarch fedora-release-common-38-34.noarch grep-3.8-3.fc38.x86_64 libutempter-1.2.1-8.fc38.x86_64 pkgconf-pkg-config-1.8.0-6.fc38.x86_64 patch-2.7.6-19.fc38.x86_64 unzip-6.0-60.fc38.x86_64 basesystem-11-15.fc38.noarch libcom_err-1.46.5-4.fc38.x86_64 libmount-2.38.1-4.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-qgna7p_t/R-CRAN-GenomeAdmixR/R-CRAN-GenomeAdmixR.spec) Config(child) 0 minutes 32 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1682241179.294558 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm) Config(fedora-38-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-38-x86_64-1682241179.294558/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 27 kB/s | 1.5 kB 00:00 Copr repository 38 MB/s | 45 MB 00:01 fedora 450 kB/s | 22 kB 00:00 updates 408 kB/s | 18 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm Start: build setup for R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 22 kB/s | 1.5 kB 00:00 fedora 468 kB/s | 22 kB 00:00 updates 394 kB/s | 18 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-CRAN-Rcpp x86_64 1.0.10-1.fc38.copr5812115 copr_base 2.0 M R-CRAN-RcppArmadillo x86_64 0.12.2.0.0-1.fc38.copr5815606 copr_base 900 k R-CRAN-RcppParallel x86_64 5.1.7-1.fc38.copr5812289 copr_base 140 k R-CRAN-ggplot2 noarch 3.4.2-1.fc38.copr5826103 copr_base 4.2 M R-CRAN-ggridges noarch 0.5.4-1.fc38.copr5826998 copr_base 2.1 M R-CRAN-hierfstat noarch 0.5.11-1.fc38.copr5829507 copr_base 485 k R-CRAN-rlang x86_64 1.1.0-1.fc38.copr5812121 copr_base 1.6 M R-CRAN-stringr noarch 1.5.0-1.fc38.copr5819451 copr_base 319 k R-CRAN-tibble x86_64 3.2.1-1.fc38.copr5821162 copr_base 632 k R-CRAN-vcfR x86_64 1.14.0-1.fc38.copr5828291 copr_base 1.7 M R-core x86_64 4.3.0-1.fc38~bootstrap copr_base 61 M R-devel x86_64 4.3.0-1.fc38~bootstrap copr_base 11 k Installing dependencies: R-CRAN-MASS x86_64 7.3.59-1.fc38.copr5836207 copr_base 1.2 M R-CRAN-Matrix x86_64 1.5.4-1.fc38.copr5817248 copr_base 4.2 M R-CRAN-R6 noarch 2.5.1-1.fc38.copr5812135 copr_base 96 k R-CRAN-RColorBrewer noarch 1.1.3-1.fc38.copr5812145 copr_base 65 k R-CRAN-ade4 x86_64 1.7.22-1.fc38.copr5817857 copr_base 5.4 M R-CRAN-adegenet x86_64 2.1.10-1.fc38.copr5827080 copr_base 2.8 M R-CRAN-ape x86_64 5.7.1-1.fc38.copr5817843 copr_base 3.0 M R-CRAN-base64enc x86_64 0.1.3-3.fc38.copr5812148 copr_base 40 k R-CRAN-boot noarch 1.3.28.1-1.fc38.copr5814823 copr_base 701 k R-CRAN-bslib noarch 0.4.2-1.fc38.copr5824296 copr_base 4.0 M R-CRAN-cachem x86_64 1.0.7-1.fc38.copr5817308 copr_base 82 k R-CRAN-cli x86_64 3.6.1-1.fc38.copr5812158 copr_base 1.3 M R-CRAN-cluster x86_64 2.1.4-1.fc38.copr5814824 copr_base 620 k R-CRAN-colorspace x86_64 2.1.0-1.fc38.copr5812150 copr_base 2.4 M R-CRAN-commonmark x86_64 1.9.0-1.fc38.copr5812171 copr_base 140 k R-CRAN-crayon noarch 1.5.2-1.fc38.copr5812139 copr_base 182 k R-CRAN-digest x86_64 0.6.31-1.fc38.copr5812122 copr_base 207 k R-CRAN-dplyr x86_64 1.1.2-1.fc38.copr5826104 copr_base 1.5 M R-CRAN-ellipsis x86_64 0.3.2-1.fc38.copr5815610 copr_base 49 k R-CRAN-fansi x86_64 1.0.4-1.fc38.copr5812149 copr_base 338 k R-CRAN-farver x86_64 2.1.1-1.fc38.copr5812193 copr_base 1.3 M R-CRAN-fastmap x86_64 1.1.1-1.fc38.copr5813019 copr_base 79 k R-CRAN-fontawesome noarch 0.5.1-1.fc38.copr5820775 copr_base 1.3 M R-CRAN-fs x86_64 1.6.1-1.fc38.copr5812198 copr_base 310 k R-CRAN-gaston x86_64 1.5.9-1.fc38.copr5819782 copr_base 2.8 M R-CRAN-generics noarch 0.1.3-1.fc38.copr5812201 copr_base 99 k R-CRAN-glue x86_64 1.6.2-1.fc38.copr5812116 copr_base 162 k R-CRAN-gtable noarch 0.3.3-1.fc38.copr5817789 copr_base 232 k R-CRAN-gtools x86_64 3.9.4-1.fc38.copr5812129 copr_base 387 k R-CRAN-htmltools x86_64 0.5.5-1.fc38.copr5817794 copr_base 380 k R-CRAN-httpuv x86_64 1.6.9-1.fc38.copr5819457 copr_base 560 k R-CRAN-igraph x86_64 1.4.2-1.fc38.copr5817795 copr_base 4.5 M R-CRAN-isoband x86_64 0.2.7-1.fc38.copr5813294 copr_base 1.6 M R-CRAN-jquerylib noarch 0.1.4-1.fc38.copr5820526 copr_base 301 k R-CRAN-jsonlite x86_64 1.8.4-1.fc38.copr5812131 copr_base 636 k R-CRAN-labeling noarch 0.4.2-1.fc38.copr5812144 copr_base 77 k R-CRAN-later x86_64 1.3.0-1.fc38.copr5815608 copr_base 126 k R-CRAN-lattice x86_64 0.21.8-1.fc38.copr5814828 copr_base 1.4 M R-CRAN-lifecycle noarch 1.0.3-1.fc38.copr5816294 copr_base 131 k R-CRAN-magrittr x86_64 2.0.3-1.fc38.copr5812133 copr_base 222 k R-CRAN-memoise noarch 2.0.1-1.fc38.copr5817811 copr_base 63 k R-CRAN-memuse x86_64 4.2.3-1.fc38.copr5813468 copr_base 650 k R-CRAN-mgcv x86_64 1.8.42-1.fc38.copr5819019 copr_base 3.3 M R-CRAN-mime x86_64 0.12-1.fc38.copr5812138 copr_base 47 k R-CRAN-munsell noarch 0.5.0-3.fc38.copr5815607 copr_base 251 k R-CRAN-nlme x86_64 3.1.162-1.fc38.copr5817249 copr_base 2.4 M R-CRAN-permute noarch 0.9.7-1.fc38.copr5812447 copr_base 243 k R-CRAN-pillar noarch 1.9.0-1.fc38.copr5819458 copr_base 624 k R-CRAN-pinfsc50 noarch 1.2.0-3.fc38.copr5814131 copr_base 3.3 M R-CRAN-pixmap noarch 0.4.12-1.fc38.copr5812481 copr_base 227 k R-CRAN-pkgconfig noarch 2.0.3-3.fc38.copr5812134 copr_base 30 k R-CRAN-plyr x86_64 1.8.8-1.fc38.copr5815605 copr_base 851 k R-CRAN-promises x86_64 1.2.0.1-1.fc38.copr5817799 copr_base 1.5 M R-CRAN-rappdirs x86_64 0.3.3-1.fc38.copr5812248 copr_base 60 k R-CRAN-reshape2 x86_64 1.4.4-3.fc38.copr5821160 copr_base 129 k R-CRAN-sass x86_64 0.4.5-1.fc38.copr5820330 copr_base 2.1 M R-CRAN-scales noarch 1.2.1-1.fc38.copr5817798 copr_base 638 k R-CRAN-segmented noarch 1.6.4-1.fc38.copr5817874 copr_base 811 k R-CRAN-seqinr x86_64 4.2.30-1.fc38.copr5819535 copr_base 4.0 M R-CRAN-shiny noarch 1.7.4-1.fc38.copr5826102 copr_base 3.5 M R-CRAN-sourcetools x86_64 0.1.7.1-1.fc38.copr5812146 copr_base 63 k R-CRAN-sp x86_64 1.6.0-1.fc38.copr5815646 copr_base 1.9 M R-CRAN-stringi x86_64 1.7.12-1.fc38.copr5812147 copr_base 996 k R-CRAN-tidyselect noarch 1.2.0-1.fc38.copr5819454 copr_base 232 k R-CRAN-utf8 x86_64 1.2.3-1.fc38.copr5812151 copr_base 150 k R-CRAN-vctrs x86_64 0.6.2-1.fc38.copr5817801 copr_base 1.3 M R-CRAN-vegan x86_64 2.6.4-1.fc38.copr5819539 copr_base 3.2 M R-CRAN-viridisLite noarch 0.4.1-1.fc38.copr5812125 copr_base 1.2 M R-CRAN-withr noarch 2.5.0-1.fc38.copr5812126 copr_base 256 k R-CRAN-xtable noarch 1.8.4-3.fc38.copr5812130 copr_base 703 k R-core-devel x86_64 4.3.0-1.fc38~bootstrap copr_base 86 k R-java x86_64 4.3.0-1.fc38~bootstrap copr_base 11 k R-java-devel x86_64 4.3.0-1.fc38~bootstrap copr_base 11 k R-littler x86_64 0.3.18-1.fc38 fedora 76 k R-rpm-macros noarch 1.2.1-6.fc38 fedora 11 k alsa-lib x86_64 1.2.8-3.fc38 fedora 516 k annobin-docs noarch 12.02-1.fc38 updates 94 k annobin-plugin-gcc x86_64 12.02-1.fc38 updates 897 k avahi-libs x86_64 0.8-22.fc38 updates 66 k brotli x86_64 1.0.9-11.fc38 fedora 316 k brotli-devel x86_64 1.0.9-11.fc38 fedora 31 k bzip2-devel x86_64 1.0.8-13.fc38 fedora 214 k cairo x86_64 1.17.8-3.fc38 fedora 703 k cmake-filesystem x86_64 3.26.3-1.fc38 updates 17 k copy-jdk-configs noarch 4.1-2.fc38 fedora 28 k cpp x86_64 13.0.1-0.12.fc38 fedora 11 M crypto-policies-scripts noarch 20230301-1.gita12f7b2.fc38 fedora 116 k cups-libs x86_64 1:2.4.2-11.fc38 fedora 267 k dbus-libs x86_64 1:1.14.6-1.fc38 fedora 156 k desktop-file-utils x86_64 0.26-8.fc38 fedora 71 k emacs-filesystem noarch 1:28.2-4.fc38 fedora 7.6 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-1.fc38 updates 32 k flexiblas-devel x86_64 3.3.1-1.fc38 updates 116 k flexiblas-netlib x86_64 3.3.1-1.fc38 updates 3.1 M flexiblas-netlib64 x86_64 3.3.1-1.fc38 updates 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-1.fc38 updates 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-1.fc38 updates 17 k fontconfig x86_64 2.14.2-1.fc38 fedora 295 k fontconfig-devel x86_64 2.14.2-1.fc38 fedora 164 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.0-2.fc38 fedora 414 k freetype-devel x86_64 2.13.0-2.fc38 fedora 945 k fribidi x86_64 1.0.12-3.fc38 fedora 89 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc x86_64 13.0.1-0.12.fc38 fedora 34 M gcc-c++ x86_64 13.0.1-0.12.fc38 fedora 13 M gcc-gfortran x86_64 13.0.1-0.12.fc38 fedora 12 M gcc-plugin-annobin x86_64 13.0.1-0.12.fc38 fedora 40 k gettext x86_64 0.21.1-2.fc38 fedora 1.0 M gettext-envsubst x86_64 0.21.1-2.fc38 fedora 36 k gettext-libs x86_64 0.21.1-2.fc38 fedora 320 k gettext-runtime x86_64 0.21.1-2.fc38 fedora 117 k glib2 x86_64 2.76.1-1.fc38 fedora 2.8 M glib2-devel x86_64 2.76.1-1.fc38 fedora 587 k glibc-devel x86_64 2.37-1.fc38 fedora 50 k glibc-headers-x86 noarch 2.37-1.fc38 fedora 530 k glpk x86_64 5.0-6.fc38 fedora 387 k gnutls x86_64 3.8.0-2.fc38 fedora 1.1 M google-noto-fonts-common noarch 20230201-1.fc38 fedora 16 k google-noto-sans-vf-fonts noarch 20230201-1.fc38 fedora 580 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k graphite2-devel x86_64 1.3.14-11.fc38 fedora 20 k guile22 x86_64 2.2.7-7.fc38 fedora 6.5 M harfbuzz x86_64 7.1.0-1.fc38 fedora 889 k harfbuzz-devel x86_64 7.1.0-1.fc38 fedora 445 k harfbuzz-icu x86_64 7.1.0-1.fc38 fedora 16 k java-17-openjdk x86_64 1:17.0.6.0.10-1.fc38 fedora 430 k java-17-openjdk-devel x86_64 1:17.0.6.0.10-1.fc38 fedora 4.7 M java-17-openjdk-headless x86_64 1:17.0.6.0.10-1.fc38 fedora 42 M javapackages-filesystem noarch 6.1.0-7.fc38 fedora 13 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k kernel-headers x86_64 6.2.6-300.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-32.fc38 updates 9.6 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libRmath x86_64 4.3.0-1.fc38~bootstrap copr_base 122 k libRmath-devel x86_64 4.3.0-1.fc38~bootstrap copr_base 16 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.4-1.fc38 fedora 649 k libX11-common noarch 1.8.4-1.fc38 fedora 177 k libX11-devel x86_64 1.8.4-1.fc38 fedora 1.0 M libX11-xcb x86_64 1.8.4-1.fc38 fedora 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXcomposite x86_64 0.4.5-9.fc38 fedora 23 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXft x86_64 2.3.6-2.fc38 fedora 71 k libXft-devel x86_64 2.3.6-2.fc38 fedora 50 k libXi x86_64 1.8-4.fc38 fedora 40 k libXmu x86_64 1.1.4-2.fc38 fedora 77 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXrender-devel x86_64 0.9.11-2.fc38 fedora 19 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXtst x86_64 1.2.4-2.fc38 fedora 20 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid-devel x86_64 2.38.1-4.fc38 fedora 16 k libdatrie x86_64 0.2.13-5.fc38 fedora 32 k libffi-devel x86_64 3.4.4-2.fc38 fedora 29 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.0.1-0.12.fc38 fedora 898 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libmount-devel x86_64 2.38.1-4.fc38 fedora 18 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libpng-devel x86_64 2:1.6.37-14.fc38 fedora 291 k libquadmath x86_64 13.0.1-0.12.fc38 fedora 189 k libquadmath-devel x86_64 13.0.1-0.12.fc38 fedora 30 k libselinux-devel x86_64 3.5-1.fc38 fedora 151 k libsepol-devel x86_64 3.5-1.fc38 fedora 49 k libstdc++-devel x86_64 13.0.1-0.12.fc38 fedora 2.6 M libthai x86_64 0.1.29-4.fc38 fedora 213 k libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtirpc-devel x86_64 1.3.3-1.fc38 fedora 126 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunistring x86_64 1.1-3.fc38 fedora 545 k libwebp x86_64 1.3.0-2.fc38 fedora 282 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.33-7.fc38 fedora 30 k libxml2-devel x86_64 2.10.4-1.fc38 updates 531 k lksctp-tools x86_64 1.0.19-3.fc38 fedora 92 k lua x86_64 5.4.4-9.fc38 fedora 190 k lua-posix x86_64 35.1-5.fc38 fedora 138 k make x86_64 1:4.4-3.fc38 fedora 580 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k nettle x86_64 3.8-3.fc38 fedora 412 k nspr x86_64 4.35.0-6.fc38 fedora 136 k nss x86_64 3.89.0-2.fc38 fedora 693 k nss-softokn x86_64 3.89.0-2.fc38 fedora 1.0 M nss-softokn-freebl x86_64 3.89.0-2.fc38 fedora 325 k nss-sysinit x86_64 3.89.0-2.fc38 fedora 18 k nss-util x86_64 3.89.0-2.fc38 fedora 86 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openblas-openmp64 x86_64 0.3.21-4.fc38 fedora 4.9 M pango x86_64 1.50.14-1.fc38 fedora 342 k pcre2-devel x86_64 10.42-1.fc38.1 fedora 506 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k pcre2-utf32 x86_64 10.42-1.fc38.1 fedora 201 k pixman x86_64 0.42.2-1.fc38 fedora 285 k python-pip-wheel noarch 22.3.1-2.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-2.fc38 fedora 715 k python3 x86_64 3.11.3-1.fc38 updates 28 k python3-libs x86_64 3.11.3-1.fc38 updates 9.6 M suitesparse x86_64 5.13.0-2.fc38 fedora 1.1 M sysprof-capture-devel x86_64 3.48.0-1.fc38 fedora 58 k tbb x86_64 2020.3-16.fc38 fedora 169 k tbb-devel x86_64 2020.3-16.fc38 fedora 335 k tcl x86_64 1:8.6.12-4.fc38 fedora 1.1 M tcl-devel x86_64 1:8.6.12-4.fc38 fedora 169 k tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M tk-devel x86_64 1:8.6.12-4.fc38 fedora 538 k tre x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 43 k tre-common noarch 0.8.0-39.20140228gitc2f5d13.fc38 fedora 31 k tre-devel x86_64 0.8.0-39.20140228gitc2f5d13.fc38 fedora 12 k ttmkfdir x86_64 3.0.9-67.fc38 fedora 54 k tzdata-java noarch 2023c-1.fc38 fedora 208 k xdg-utils noarch 1.1.3-13.fc38 fedora 77 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-35.fc38 fedora 505 k xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k xz-devel x86_64 5.4.1-1.fc38 fedora 65 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary ======================================================================================== Install 238 Packages Total size: 356 M Total download size: 41 M Installed size: 1.0 G Downloading Packages: [SKIPPED] R-CRAN-MASS-7.3.59-1.fc38.copr5836207.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-Matrix-1.5.4-1.fc38.copr5817248.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-Rcpp-1.0.10-1.fc38.copr5812115.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-base64enc-0.1.3-3.fc38.copr5812148.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-bslib-0.4.2-1.fc38.copr5824296.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-cachem-1.0.7-1.fc38.copr5817308.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-cli-3.6.1-1.fc38.copr5812158.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-commonmark-1.9.0-1.fc38.copr5812171.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-crayon-1.5.2-1.fc38.copr5812139.noarch.rpm: 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R-CRAN-htmltools-0.5.5-1.fc38.copr5817794.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-httpuv-1.6.9-1.fc38.copr5819457.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-isoband-0.2.7-1.fc38.copr5813294.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-jquerylib-0.1.4-1.fc38.copr5820526.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-jsonlite-1.8.4-1.fc38.copr5812131.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-labeling-0.4.2-1.fc38.copr5812144.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-later-1.3.0-1.fc38.copr5815608.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lattice-0.21.8-1.fc38.copr5814828.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-lifecycle-1.0.3-1.fc38.copr5816294.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-magrittr-2.0.3-1.fc38.copr5812133.x86_64.rpm: Already downloaded [SKIPPED] R-CRAN-memoise-2.0.1-1.fc38.copr5817811.noarch.rpm: Already downloaded [SKIPPED] R-CRAN-mgcv-1.8.42-1.fc38.copr5819019.x86_64.rpm: Already downloaded [SKIPPED] 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[SKIPPED] cups-libs-2.4.2-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] dbus-libs-1.14.6-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] desktop-file-utils-0.26-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.2-4.fc38.noarch.rpm: Already downloaded [SKIPPED] expat-2.5.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.14.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-devel-2.14.2-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] freetype-devel-2.13.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] fribidi-1.0.12-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.0.1-0.12.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.0.1-0.12.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-gfortran-13.0.1-0.12.fc38.x86_64.rpm: Already downloaded 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guile22-2.2.7-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-devel-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] harfbuzz-icu-7.1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-17.0.6.0.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-devel-17.0.6.0.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] java-17-openjdk-headless-17.0.6.0.10-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] javapackages-filesystem-6.1.0-7.fc38.noarch.rpm: Already downloaded [SKIPPED] jbigkit-libs-2.1-25.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-headers-6.2.6-300.fc38.x86_64.rpm: Already downloaded [SKIPPED] libICE-1.0.10-10.fc38.x86_64.rpm: Already downloaded [SKIPPED] libSM-1.2.3-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-1.8.4-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libX11-common-1.8.4-1.fc38.noarch.rpm: Already downloaded [SKIPPED] 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jbigkit-libs-2.1-25.fc38.x86_64 136/238 Verifying : kernel-headers-6.2.6-300.fc38.x86_64 137/238 Verifying : libICE-1.0.10-10.fc38.x86_64 138/238 Verifying : libSM-1.2.3-12.fc38.x86_64 139/238 Verifying : libX11-1.8.4-1.fc38.x86_64 140/238 Verifying : libX11-common-1.8.4-1.fc38.noarch 141/238 Verifying : libX11-devel-1.8.4-1.fc38.x86_64 142/238 Verifying : libX11-xcb-1.8.4-1.fc38.x86_64 143/238 Verifying : libXau-1.0.11-2.fc38.x86_64 144/238 Verifying : libXau-devel-1.0.11-2.fc38.x86_64 145/238 Verifying : libXcomposite-0.4.5-9.fc38.x86_64 146/238 Verifying : libXext-1.3.5-2.fc38.x86_64 147/238 Verifying : libXft-2.3.6-2.fc38.x86_64 148/238 Verifying : libXft-devel-2.3.6-2.fc38.x86_64 149/238 Verifying : libXi-1.8-4.fc38.x86_64 150/238 Verifying : libXmu-1.1.4-2.fc38.x86_64 151/238 Verifying : libXrender-0.9.11-2.fc38.x86_64 152/238 Verifying : libXrender-devel-0.9.11-2.fc38.x86_64 153/238 Verifying : libXt-1.2.1-4.fc38.x86_64 154/238 Verifying : libXtst-1.2.4-2.fc38.x86_64 155/238 Verifying : libb2-0.98.1-8.fc38.x86_64 156/238 Verifying : libblkid-devel-2.38.1-4.fc38.x86_64 157/238 Verifying : libdatrie-0.2.13-5.fc38.x86_64 158/238 Verifying : libffi-devel-3.4.4-2.fc38.x86_64 159/238 Verifying : libfontenc-1.1.6-2.fc38.x86_64 160/238 Verifying : libgfortran-13.0.1-0.12.fc38.x86_64 161/238 Verifying : libicu-72.1-2.fc38.x86_64 162/238 Verifying : libicu-devel-72.1-2.fc38.x86_64 163/238 Verifying : libjpeg-turbo-2.1.4-2.fc38.x86_64 164/238 Verifying : libmount-devel-2.38.1-4.fc38.x86_64 165/238 Verifying : libmpc-1.3.1-2.fc38.x86_64 166/238 Verifying : libpng-2:1.6.37-14.fc38.x86_64 167/238 Verifying : libpng-devel-2:1.6.37-14.fc38.x86_64 168/238 Verifying : libquadmath-13.0.1-0.12.fc38.x86_64 169/238 Verifying : libquadmath-devel-13.0.1-0.12.fc38.x86_64 170/238 Verifying : libselinux-devel-3.5-1.fc38.x86_64 171/238 Verifying : libsepol-devel-3.5-1.fc38.x86_64 172/238 Verifying : libstdc++-devel-13.0.1-0.12.fc38.x86_64 173/238 Verifying : libthai-0.1.29-4.fc38.x86_64 174/238 Verifying : libtiff-4.4.0-5.fc38.x86_64 175/238 Verifying : libtirpc-devel-1.3.3-1.fc38.x86_64 176/238 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 177/238 Verifying : libunistring-1.1-3.fc38.x86_64 178/238 Verifying : libwebp-1.3.0-2.fc38.x86_64 179/238 Verifying : libxcb-1.13.1-11.fc38.x86_64 180/238 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 181/238 Verifying : libxcrypt-devel-4.4.33-7.fc38.x86_64 182/238 Verifying : lksctp-tools-1.0.19-3.fc38.x86_64 183/238 Verifying : lua-5.4.4-9.fc38.x86_64 184/238 Verifying : lua-posix-35.1-5.fc38.x86_64 185/238 Verifying : make-1:4.4-3.fc38.x86_64 186/238 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 187/238 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 188/238 Verifying : nettle-3.8-3.fc38.x86_64 189/238 Verifying : nspr-4.35.0-6.fc38.x86_64 190/238 Verifying : nss-3.89.0-2.fc38.x86_64 191/238 Verifying : nss-softokn-3.89.0-2.fc38.x86_64 192/238 Verifying : nss-softokn-freebl-3.89.0-2.fc38.x86_64 193/238 Verifying : nss-sysinit-3.89.0-2.fc38.x86_64 194/238 Verifying : nss-util-3.89.0-2.fc38.x86_64 195/238 Verifying : openblas-0.3.21-4.fc38.x86_64 196/238 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 197/238 Verifying : openblas-openmp64-0.3.21-4.fc38.x86_64 198/238 Verifying : pango-1.50.14-1.fc38.x86_64 199/238 Verifying : pcre2-devel-10.42-1.fc38.1.x86_64 200/238 Verifying : pcre2-utf16-10.42-1.fc38.1.x86_64 201/238 Verifying : pcre2-utf32-10.42-1.fc38.1.x86_64 202/238 Verifying : pixman-0.42.2-1.fc38.x86_64 203/238 Verifying : python-pip-wheel-22.3.1-2.fc38.noarch 204/238 Verifying : python-setuptools-wheel-65.5.1-2.fc38.noarch 205/238 Verifying : suitesparse-5.13.0-2.fc38.x86_64 206/238 Verifying : sysprof-capture-devel-3.48.0-1.fc38.x86_64 207/238 Verifying : tbb-2020.3-16.fc38.x86_64 208/238 Verifying : tbb-devel-2020.3-16.fc38.x86_64 209/238 Verifying : tcl-1:8.6.12-4.fc38.x86_64 210/238 Verifying : tcl-devel-1:8.6.12-4.fc38.x86_64 211/238 Verifying : tk-1:8.6.12-4.fc38.x86_64 212/238 Verifying : tk-devel-1:8.6.12-4.fc38.x86_64 213/238 Verifying : tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 214/238 Verifying : tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noar 215/238 Verifying : tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_6 216/238 Verifying : ttmkfdir-3.0.9-67.fc38.x86_64 217/238 Verifying : tzdata-java-2023c-1.fc38.noarch 218/238 Verifying : xdg-utils-1.1.3-13.fc38.noarch 219/238 Verifying : xml-common-0.6.3-60.fc38.noarch 220/238 Verifying : xorg-x11-fonts-Type1-7.5-35.fc38.noarch 221/238 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 222/238 Verifying : xz-devel-5.4.1-1.fc38.x86_64 223/238 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 224/238 Verifying : annobin-docs-12.02-1.fc38.noarch 225/238 Verifying : annobin-plugin-gcc-12.02-1.fc38.x86_64 226/238 Verifying : avahi-libs-0.8-22.fc38.x86_64 227/238 Verifying : cmake-filesystem-3.26.3-1.fc38.x86_64 228/238 Verifying : flexiblas-3.3.1-1.fc38.x86_64 229/238 Verifying : flexiblas-devel-3.3.1-1.fc38.x86_64 230/238 Verifying : flexiblas-netlib-3.3.1-1.fc38.x86_64 231/238 Verifying : flexiblas-netlib64-3.3.1-1.fc38.x86_64 232/238 Verifying : flexiblas-openblas-openmp-3.3.1-1.fc38.x86_64 233/238 Verifying : flexiblas-openblas-openmp64-3.3.1-1.fc38.x86_64 234/238 Verifying : langpacks-core-font-en-3.0-32.fc38.noarch 235/238 Verifying : libxml2-devel-2.10.4-1.fc38.x86_64 236/238 Verifying : python3-3.11.3-1.fc38.x86_64 237/238 Verifying : python3-libs-3.11.3-1.fc38.x86_64 238/238 Installed products updated. Installed: R-CRAN-MASS-7.3.59-1.fc38.copr5836207.x86_64 R-CRAN-Matrix-1.5.4-1.fc38.copr5817248.x86_64 R-CRAN-R6-2.5.1-1.fc38.copr5812135.noarch R-CRAN-RColorBrewer-1.1.3-1.fc38.copr5812145.noarch R-CRAN-Rcpp-1.0.10-1.fc38.copr5812115.x86_64 R-CRAN-RcppArmadillo-0.12.2.0.0-1.fc38.copr5815606.x86_64 R-CRAN-RcppParallel-5.1.7-1.fc38.copr5812289.x86_64 R-CRAN-ade4-1.7.22-1.fc38.copr5817857.x86_64 R-CRAN-adegenet-2.1.10-1.fc38.copr5827080.x86_64 R-CRAN-ape-5.7.1-1.fc38.copr5817843.x86_64 R-CRAN-base64enc-0.1.3-3.fc38.copr5812148.x86_64 R-CRAN-boot-1.3.28.1-1.fc38.copr5814823.noarch R-CRAN-bslib-0.4.2-1.fc38.copr5824296.noarch R-CRAN-cachem-1.0.7-1.fc38.copr5817308.x86_64 R-CRAN-cli-3.6.1-1.fc38.copr5812158.x86_64 R-CRAN-cluster-2.1.4-1.fc38.copr5814824.x86_64 R-CRAN-colorspace-2.1.0-1.fc38.copr5812150.x86_64 R-CRAN-commonmark-1.9.0-1.fc38.copr5812171.x86_64 R-CRAN-crayon-1.5.2-1.fc38.copr5812139.noarch R-CRAN-digest-0.6.31-1.fc38.copr5812122.x86_64 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R-CRAN-sass-0.4.5-1.fc38.copr5820330.x86_64 R-CRAN-scales-1.2.1-1.fc38.copr5817798.noarch R-CRAN-segmented-1.6.4-1.fc38.copr5817874.noarch R-CRAN-seqinr-4.2.30-1.fc38.copr5819535.x86_64 R-CRAN-shiny-1.7.4-1.fc38.copr5826102.noarch R-CRAN-sourcetools-0.1.7.1-1.fc38.copr5812146.x86_64 R-CRAN-sp-1.6.0-1.fc38.copr5815646.x86_64 R-CRAN-stringi-1.7.12-1.fc38.copr5812147.x86_64 R-CRAN-stringr-1.5.0-1.fc38.copr5819451.noarch R-CRAN-tibble-3.2.1-1.fc38.copr5821162.x86_64 R-CRAN-tidyselect-1.2.0-1.fc38.copr5819454.noarch R-CRAN-utf8-1.2.3-1.fc38.copr5812151.x86_64 R-CRAN-vcfR-1.14.0-1.fc38.copr5828291.x86_64 R-CRAN-vctrs-0.6.2-1.fc38.copr5817801.x86_64 R-CRAN-vegan-2.6.4-1.fc38.copr5819539.x86_64 R-CRAN-viridisLite-0.4.1-1.fc38.copr5812125.noarch R-CRAN-withr-2.5.0-1.fc38.copr5812126.noarch R-CRAN-xtable-1.8.4-3.fc38.copr5812130.noarch R-core-4.3.0-1.fc38~bootstrap.x86_64 R-core-devel-4.3.0-1.fc38~bootstrap.x86_64 R-devel-4.3.0-1.fc38~bootstrap.x86_64 R-java-4.3.0-1.fc38~bootstrap.x86_64 R-java-devel-4.3.0-1.fc38~bootstrap.x86_64 R-littler-0.3.18-1.fc38.x86_64 R-rpm-macros-1.2.1-6.fc38.noarch alsa-lib-1.2.8-3.fc38.x86_64 annobin-docs-12.02-1.fc38.noarch annobin-plugin-gcc-12.02-1.fc38.x86_64 avahi-libs-0.8-22.fc38.x86_64 brotli-1.0.9-11.fc38.x86_64 brotli-devel-1.0.9-11.fc38.x86_64 bzip2-devel-1.0.8-13.fc38.x86_64 cairo-1.17.8-3.fc38.x86_64 cmake-filesystem-3.26.3-1.fc38.x86_64 copy-jdk-configs-4.1-2.fc38.noarch cpp-13.0.1-0.12.fc38.x86_64 crypto-policies-scripts-20230301-1.gita12f7b2.fc38.noarch cups-libs-1:2.4.2-11.fc38.x86_64 dbus-libs-1:1.14.6-1.fc38.x86_64 desktop-file-utils-0.26-8.fc38.x86_64 emacs-filesystem-1:28.2-4.fc38.noarch expat-2.5.0-2.fc38.x86_64 flexiblas-3.3.1-1.fc38.x86_64 flexiblas-devel-3.3.1-1.fc38.x86_64 flexiblas-netlib-3.3.1-1.fc38.x86_64 flexiblas-netlib64-3.3.1-1.fc38.x86_64 flexiblas-openblas-openmp-3.3.1-1.fc38.x86_64 flexiblas-openblas-openmp64-3.3.1-1.fc38.x86_64 fontconfig-2.14.2-1.fc38.x86_64 fontconfig-devel-2.14.2-1.fc38.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.0-2.fc38.x86_64 freetype-devel-2.13.0-2.fc38.x86_64 fribidi-1.0.12-3.fc38.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.0.1-0.12.fc38.x86_64 gcc-c++-13.0.1-0.12.fc38.x86_64 gcc-gfortran-13.0.1-0.12.fc38.x86_64 gcc-plugin-annobin-13.0.1-0.12.fc38.x86_64 gettext-0.21.1-2.fc38.x86_64 gettext-envsubst-0.21.1-2.fc38.x86_64 gettext-libs-0.21.1-2.fc38.x86_64 gettext-runtime-0.21.1-2.fc38.x86_64 glib2-2.76.1-1.fc38.x86_64 glib2-devel-2.76.1-1.fc38.x86_64 glibc-devel-2.37-1.fc38.x86_64 glibc-headers-x86-2.37-1.fc38.noarch glpk-5.0-6.fc38.x86_64 gnutls-3.8.0-2.fc38.x86_64 google-noto-fonts-common-20230201-1.fc38.noarch google-noto-sans-vf-fonts-20230201-1.fc38.noarch graphite2-1.3.14-11.fc38.x86_64 graphite2-devel-1.3.14-11.fc38.x86_64 guile22-2.2.7-7.fc38.x86_64 harfbuzz-7.1.0-1.fc38.x86_64 harfbuzz-devel-7.1.0-1.fc38.x86_64 harfbuzz-icu-7.1.0-1.fc38.x86_64 java-17-openjdk-1:17.0.6.0.10-1.fc38.x86_64 java-17-openjdk-devel-1:17.0.6.0.10-1.fc38.x86_64 java-17-openjdk-headless-1:17.0.6.0.10-1.fc38.x86_64 javapackages-filesystem-6.1.0-7.fc38.noarch jbigkit-libs-2.1-25.fc38.x86_64 kernel-headers-6.2.6-300.fc38.x86_64 langpacks-core-font-en-3.0-32.fc38.noarch libICE-1.0.10-10.fc38.x86_64 libRmath-4.3.0-1.fc38~bootstrap.x86_64 libRmath-devel-4.3.0-1.fc38~bootstrap.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.4-1.fc38.x86_64 libX11-common-1.8.4-1.fc38.noarch libX11-devel-1.8.4-1.fc38.x86_64 libX11-xcb-1.8.4-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXcomposite-0.4.5-9.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXft-2.3.6-2.fc38.x86_64 libXft-devel-2.3.6-2.fc38.x86_64 libXi-1.8-4.fc38.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXrender-devel-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXtst-1.2.4-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-devel-2.38.1-4.fc38.x86_64 libdatrie-0.2.13-5.fc38.x86_64 libffi-devel-3.4.4-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.0.1-0.12.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libmount-devel-2.38.1-4.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libpng-devel-2:1.6.37-14.fc38.x86_64 libquadmath-13.0.1-0.12.fc38.x86_64 libquadmath-devel-13.0.1-0.12.fc38.x86_64 libselinux-devel-3.5-1.fc38.x86_64 libsepol-devel-3.5-1.fc38.x86_64 libstdc++-devel-13.0.1-0.12.fc38.x86_64 libthai-0.1.29-4.fc38.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtirpc-devel-1.3.3-1.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libwebp-1.3.0-2.fc38.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-7.fc38.x86_64 libxml2-devel-2.10.4-1.fc38.x86_64 lksctp-tools-1.0.19-3.fc38.x86_64 lua-5.4.4-9.fc38.x86_64 lua-posix-35.1-5.fc38.x86_64 make-1:4.4-3.fc38.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 nettle-3.8-3.fc38.x86_64 nspr-4.35.0-6.fc38.x86_64 nss-3.89.0-2.fc38.x86_64 nss-softokn-3.89.0-2.fc38.x86_64 nss-softokn-freebl-3.89.0-2.fc38.x86_64 nss-sysinit-3.89.0-2.fc38.x86_64 nss-util-3.89.0-2.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openblas-openmp64-0.3.21-4.fc38.x86_64 pango-1.50.14-1.fc38.x86_64 pcre2-devel-10.42-1.fc38.1.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 pcre2-utf32-10.42-1.fc38.1.x86_64 pixman-0.42.2-1.fc38.x86_64 python-pip-wheel-22.3.1-2.fc38.noarch python-setuptools-wheel-65.5.1-2.fc38.noarch python3-3.11.3-1.fc38.x86_64 python3-libs-3.11.3-1.fc38.x86_64 suitesparse-5.13.0-2.fc38.x86_64 sysprof-capture-devel-3.48.0-1.fc38.x86_64 tbb-2020.3-16.fc38.x86_64 tbb-devel-2020.3-16.fc38.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tcl-devel-1:8.6.12-4.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 tk-devel-1:8.6.12-4.fc38.x86_64 tre-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 tre-common-0.8.0-39.20140228gitc2f5d13.fc38.noarch tre-devel-0.8.0-39.20140228gitc2f5d13.fc38.x86_64 ttmkfdir-3.0.9-67.fc38.x86_64 tzdata-java-2023c-1.fc38.noarch xdg-utils-1.1.3-13.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-Type1-7.5-35.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xz-devel-5.4.1-1.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm Start: rpmbuild R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm warning: source_date_epoch_from_changelog set but %changelog is missing Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.3W69rJ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf GenomeAdmixR + /usr/bin/mkdir -p GenomeAdmixR + cd GenomeAdmixR + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/GenomeAdmixR_2.1.7.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d GenomeAdmixR/src ']' + find GenomeAdmixR/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d GenomeAdmixR/src ']' + find GenomeAdmixR/src/Makevars GenomeAdmixR/src/Makevars.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Nk2ir1 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd GenomeAdmixR + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.pkhYfb + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 ++ dirname /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd GenomeAdmixR + mkdir -p /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library GenomeAdmixR * installing *source* package 'GenomeAdmixR' ... ** package 'GenomeAdmixR' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++ (GCC) 13.0.1 20230401 (Red Hat 13.0.1-0)' using C++14 g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c Fish.cpp -o Fish.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c helper_functions.cpp -o helper_functions.o helper_functions.cpp: In function 'arma::mat update_frequency_tibble(const std::vector&, double, const std::vector&, int, double)': helper_functions.cpp:128:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 128 | for (int i = 0; i < v.size(); ++i) { | ~~^~~~~~~~~~ In file included from /usr/include/c++/13/vector:62, from helper_functions.h:11, from helper_functions.cpp:8: In function 'std::__copy_move::__copy_m(double const*, double const*, double*)double*', inlined from 'std::__copy_move_a2(double const*, double const*, double*)double*' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from 'std::__copy_move_a1(double const*, double const*, double*)double*' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from 'std::__copy_move_a > >, double*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, double*)double*' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from 'std::copy<__gnu_cxx::__normal_iterator > >, double*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, double*)double*' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, double*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, double*)double*' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from 'std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, double*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, double*)double*' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from 'std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, double*, double>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, double*, std::allocator&)double*' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from 'std::vector >::vector(std::vector > const&)' at /usr/include/c++/13/bits/stl_vector.h:601:31, inlined from 'scale_markers(std::vector > const&, double)' at helper_functions.cpp:625:12: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'memmove' forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c simulate.cpp -o simulate.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from simulate.cpp:20: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c simulate_emp.cpp -o simulate_emp.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from simulate_emp.cpp:24: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c simulate_migration.cpp -o simulate_migration.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from simulate_migration.cpp:22: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ g++ -std=gnu++14 -I"/usr/include/R" -DNDEBUG -I'/usr/local/lib/R/library/Rcpp/include' -I'/usr/local/lib/R/library/RcppArmadillo/include' -I'/usr/local/lib/R/library/RcppParallel/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -c simulate_migration_emp.cpp -o simulate_migration_emp.o In file included from /usr/local/lib/R/library/RcppParallel/include/RcppParallel/TBB.h:10, from /usr/local/lib/R/library/RcppParallel/include/RcppParallel.h:21, from simulate_migration_emp.cpp:20: /usr/include/tbb/tbb.h:21:154: note: '#pragma message: TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb.h contains deprecated functionality. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ simulate_migration_emp.cpp: In function 'Rcpp::List simulate_migration_emp_cpp(const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const Rcpp::NumericVector&, Rcpp::NumericMatrix, const Rcpp::NumericVector&, int, double, bool, bool, const Rcpp::NumericVector&, bool, double, double, const Rcpp::NumericMatrix&, int, const Rcpp::NumericVector&)': simulate_migration_emp.cpp:425:25: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits, long unsigned int>::value_type' {aka 'long unsigned int'} [-Wsign-compare] 425 | for (int j = 0; j < pop_size[1]; ++j) { g++ -std=gnu++14 -shared -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -fpic -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o GenomeAdmixR.so Fish.o RcppExports.o helper_functions.o simulate.o simulate_emp.o simulate_migration.o simulate_migration_emp.o -L/usr/lib64 -Wl,-rpath,/usr/lib64 -ltbb -ltbbmalloc -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library/00LOCK-GenomeAdmixR/00new/GenomeAdmixR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GenomeAdmixR' finding HTML links ... done GenomeAdmixR-package html ancestry_module html calculate_allele_frequencies html calculate_average_ld html calculate_dist_junctions html calculate_fst html calculate_heterozygosity html calculate_ld html calculate_marker_frequency html combine_input_data html create_artificial_genomeadmixr_data html create_iso_female html dgrp2.3R.5k.data html iso_female_ancestry html iso_female_sequence html load_population html migration_settings html plink_to_genomeadmixr_data html plot.individual html plot_chromosome html plot_difference_frequencies html plot_dist_junctions html plot_frequencies html plot_joyplot_frequencies html plot_over_time html plot_start_end html print.genomeadmixr_data html print.individual html print.population html read_input_data html save_population html sequence_module html simulate_admixture html simulate_ancestry html simulate_ancestry_migration html simulate_sequence html simulate_sequence_migration html simulation_data_to_genomeadmixr_data html vcfR_to_genomeadmixr_data html write_as_plink html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GenomeAdmixR) + test -d GenomeAdmixR/src + cd GenomeAdmixR/src + rm -f Fish.o RcppExports.o helper_functions.o simulate.o simulate_emp.o simulate_migration.o simulate_migration_emp.o GenomeAdmixR.so + rm -f /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library/R.css + find /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64@@g '{}' ';' + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.1.7-1.fc38.copr5832313 --unique-debug-suffix -2.1.7-1.fc38.copr5832313.x86_64 --unique-debug-src-base R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/GenomeAdmixR extracting debug info from /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/usr/local/lib/R/library/GenomeAdmixR/libs/GenomeAdmixR.so original debug info size: 5344kB, size after compression: 4432kB /usr/bin/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 251 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/simulate_migration_emp.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/simulate_migration.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/simulate.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/random_functions.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/helper_functions.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/helper_functions.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/Fish.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64/GenomeAdmixR/src/Fish.cpp is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/GenomeAdmixR/doc/Demonstrate_isofemales.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/GenomeAdmixR/doc/Joyplots.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/GenomeAdmixR/doc/Visualization.Rmd is executable but has no shebang, removing executable bit *** WARNING: ./usr/local/lib/R/library/GenomeAdmixR/doc/Walkthrough.Rmd is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 Provides: R-CRAN-GenomeAdmixR = 2.1.7-1.fc38.copr5832313 R-CRAN-GenomeAdmixR(x86-64) = 2.1.7-1.fc38.copr5832313 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtbb.so.2()(64bit) rtld(GNU_HASH) Processing files: R-CRAN-GenomeAdmixR-debugsource-2.1.7-1.fc38.copr5832313.x86_64 Provides: R-CRAN-GenomeAdmixR-debugsource = 2.1.7-1.fc38.copr5832313 R-CRAN-GenomeAdmixR-debugsource(x86-64) = 2.1.7-1.fc38.copr5832313 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-GenomeAdmixR-debuginfo-2.1.7-1.fc38.copr5832313.x86_64 Provides: R-CRAN-GenomeAdmixR-debuginfo = 2.1.7-1.fc38.copr5832313 R-CRAN-GenomeAdmixR-debuginfo(x86-64) = 2.1.7-1.fc38.copr5832313 debuginfo(build-id) = 189d45bb8748e58b32644df7f46693ff474a9000 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-GenomeAdmixR-debugsource(x86-64) = 2.1.7-1.fc38.copr5832313 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 Wrote: /builddir/build/RPMS/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-GenomeAdmixR-debugsource-2.1.7-1.fc38.copr5832313.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-GenomeAdmixR-debuginfo-2.1.7-1.fc38.copr5832313.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.j1RdbV + umask 022 + cd /builddir/build/BUILD + cd GenomeAdmixR + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.4G89Nl + umask 022 + cd /builddir/build/BUILD + rm -rf GenomeAdmixR GenomeAdmixR.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: source_date_epoch_from_changelog set but %changelog is missing Finish: rpmbuild R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm Finish: build phase for R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.rpm.log /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.librepo.log /var/lib/mock/fedora-38-x86_64-1682241179.294558/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-GenomeAdmixR-2.1.7-1.fc38.copr5832313.src.rpm) Config(child) 1 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool