%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  cohorttools
%global packver   0.1.6
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.6
Release:          1%{?dist}%{?buildtag}
Summary:          Cohort Data Analyses

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6
Requires:         R-core >= 3.6
BuildArch:        noarch
BuildRequires:    R-CRAN-Epi 
BuildRequires:    R-CRAN-cmprsk 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-DiagrammeR 
BuildRequires:    R-CRAN-DiagrammeRsvg 
BuildRequires:    R-CRAN-rsvg 
BuildRequires:    R-CRAN-mgcv 
Requires:         R-CRAN-Epi 
Requires:         R-CRAN-cmprsk 
Requires:         R-CRAN-ggplot2 
Requires:         R-stats 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-DiagrammeR 
Requires:         R-CRAN-DiagrammeRsvg 
Requires:         R-CRAN-rsvg 
Requires:         R-CRAN-mgcv 

%description
Functions to make lifetables and to calculate hazard function estimate
using Poisson regression model with splines. Includes function to draw
simple flowchart of cohort study. Function boxesLx() makes boxes of
transition rates between states. It utilizes 'Epi' package 'Lexis' data.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}