plot_network_i {pGRN} | R Documentation |
Plot interactive network based on igraph layout input
plot_network_i(graph, save_file = NULL)
graph |
igraph layout object |
save_file |
file name of the saved file, not save if NULL |
visNetwork htmlwidget
example_data <- pGRNDB
expression_matrix <- example_data[["expression"]]
pseudotime_list <- example_data[["ptime"]]$PseudoTime
dtw_dist_matrix <- get_dtw_dist_mat(expression_matrix,
pseudotime_list,
cores=1)
nets <- module_networks(dtw_dist_matrix,k=1,quantile_cutoff=50)
plot_network_i(nets[["module1"]])