%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  RRphylo
%global packver   2.8.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.8.0
Release:          1%{?dist}%{?buildtag}
Summary:          Phylogenetic Ridge Regression Methods for Comparative Studies

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.6.0
Requires:         R-core >= 3.6.0
BuildArch:        noarch
BuildRequires:    R-CRAN-emmeans >= 1.4.3
BuildRequires:    R-CRAN-ape 
BuildRequires:    R-CRAN-phytools 
BuildRequires:    R-stats4 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-doParallel 
BuildRequires:    R-parallel 
Requires:         R-CRAN-emmeans >= 1.4.3
Requires:         R-CRAN-ape 
Requires:         R-CRAN-phytools 
Requires:         R-stats4 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-doParallel 
Requires:         R-parallel 

%description
Functions for phylogenetic analysis (Castiglione et al., 2018
<doi:10.1111/2041-210X.12954>). The functions perform the estimation of
phenotypic evolutionary rates, identification of phenotypic evolutionary
rate shifts, quantification of direction and size of evolutionary change
in multivariate traits, the computation of ontogenetic shape vectors and
test for morphological convergence.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}