%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  biosampleR
%global packver   1.0.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.4
Release:          1%{?dist}%{?buildtag}
Summary:          Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 2.10
Requires:         R-core >= 2.10
BuildArch:        noarch
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-stats 
Requires:         R-CRAN-ggplot2 
Requires:         R-stats 

%description
Provides tools for the calculation of common biodiversity indices from
count data. Additionally, it incorporates bootstrapping techniques to
generate multiple samples, facilitating the estimation of confidence
intervals around these indices. Furthermore, the package allows for the
exploration of how variation in these indices changes with differing
numbers of sites, making it a useful tool with which to begin an
ecological analysis. Methods are based on the following references: Chao
et al. (2014) <doi:10.1890/13-0133.1>, Chao and Colwell (2022)
<doi:10.1002/9781119902911.ch2>, Hsieh, Ma,` and Chao (2016)
<doi:10.1111/2041-210X.12613>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}