%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  CopulaCenR
%global packver   1.2.3
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.3
Release:          1%{?dist}%{?buildtag}
Summary:          Copula-Based Regression Models for Multivariate Censored Data

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-CRAN-boot 
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-copBasic 
BuildRequires:    R-CRAN-copula 
BuildRequires:    R-CRAN-corpcor 
BuildRequires:    R-CRAN-flexsurv 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-icenReg 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-plotly 
BuildRequires:    R-CRAN-pracma 
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-VineCopula 
Requires:         R-CRAN-boot 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-copBasic 
Requires:         R-CRAN-copula 
Requires:         R-CRAN-corpcor 
Requires:         R-CRAN-flexsurv 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-icenReg 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-plotly 
Requires:         R-CRAN-pracma 
Requires:         R-CRAN-survival 
Requires:         R-CRAN-VineCopula 

%description
Copula-based regression models for multivariate censored data, including
bivariate right-censored data, bivariate interval-censored data, and
right/interval-censored semi-competing risks data. Currently supports
Clayton, Gumbel, Frank, Joe, AMH and Copula2 copula models. For marginal
models, it supports parametric (Weibull, Loglogistic, Gompertz) and
semiparametric (Cox and transformation) models. Includes methods for
convenient prediction and plotting. Also provides a bivariate
time-to-event simulation function and an information ratio-based
goodness-of-fit test for copula. Method details can be found in Sun et.al
(2019) Lifetime Data Analysis, Sun et.al (2021) Biostatistics, Sun et.al
(2022) Statistical Methods in Medical Research, Sun et.al (2022)
Biometrics, and Sun et al. (2023+) JRSSC.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}