%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  MRFcov
%global packver   1.0.39
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.0.39
Release:          1%{?dist}%{?buildtag}
Summary:          Markov Random Fields with Additional Covariates

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.3.3
Requires:         R-core >= 3.3.3
BuildArch:        noarch
BuildRequires:    R-CRAN-glmnet 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-parallel 
BuildRequires:    R-CRAN-plyr 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-caret 
BuildRequires:    R-CRAN-gridExtra 
BuildRequires:    R-CRAN-magrittr 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-stats 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-reshape2 
BuildRequires:    R-CRAN-sfsmisc 
BuildRequires:    R-CRAN-igraph 
BuildRequires:    R-grDevices 
BuildRequires:    R-CRAN-pbapply 
BuildRequires:    R-CRAN-mgcv 
BuildRequires:    R-CRAN-MASS 
Requires:         R-CRAN-glmnet 
Requires:         R-CRAN-purrr 
Requires:         R-parallel 
Requires:         R-CRAN-plyr 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-caret 
Requires:         R-CRAN-gridExtra 
Requires:         R-CRAN-magrittr 
Requires:         R-CRAN-Matrix 
Requires:         R-stats 
Requires:         R-utils 
Requires:         R-CRAN-reshape2 
Requires:         R-CRAN-sfsmisc 
Requires:         R-CRAN-igraph 
Requires:         R-grDevices 
Requires:         R-CRAN-pbapply 
Requires:         R-CRAN-mgcv 
Requires:         R-CRAN-MASS 

%description
Approximate node interaction parameters of Markov Random Fields graphical
networks. Models can incorporate additional covariates, allowing users to
estimate how interactions between nodes in the graph are predicted to
change across covariate gradients. The general methods implemented in this
package are described in Clark et al. (2018) <doi:10.1002/ecy.2221>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}