%global __brp_check_rpaths %{nil}
%global packname  SLOPE
%global packver   0.5.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.5.0
Release:          1%{?dist}%{?buildtag}
Summary:          Sorted L1 Penalized Estimation

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-RcppArmadillo >= 0.9.850.1.0
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-foreach 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-glmnet 
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-mice 
BuildRequires:    R-CRAN-Rcpp 
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-foreach 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-glmnet 
Requires:         R-CRAN-Matrix 
Requires:         R-methods 
Requires:         R-CRAN-mice 
Requires:         R-CRAN-Rcpp 

%description
Efficient implementations for Sorted L-One Penalized Estimation (SLOPE):
generalized linear models regularized with the sorted L1-norm (Bogdan et
al. (2015) <doi:10/gfgwzt>). Supported models include ordinary
least-squares regression, binomial regression, multinomial regression, and
Poisson regression. Both dense and sparse predictor matrices are
supported. In addition, the package features predictor screening rules
that enable fast and efficient solutions to high-dimensional problems.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}