%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PHInfiniteEstimates
%global packver   2.9.5
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          2.9.5
Release:          1%{?dist}%{?buildtag}
Summary:          Tools for Inference in the Presence of a Monotone Likelihood

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-Rdpack >= 0.7
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-CRAN-lpSolve 
BuildRequires:    R-CRAN-coxphf 
BuildRequires:    R-CRAN-nph 
Requires:         R-CRAN-Rdpack >= 0.7
Requires:         R-CRAN-survival 
Requires:         R-CRAN-lpSolve 
Requires:         R-CRAN-coxphf 
Requires:         R-CRAN-nph 

%description
Proportional hazards estimation in the presence of a partially monotone
likelihood has difficulties, in that finite estimators do not exist.
These difficulties are related to those arising from logistic and
multinomial regression.  References for methods are given in the separate
function documents.  Supported by grant NSF DMS 1712839.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}