simer.Data.Kin {simer} | R Documentation |
constructing EMMA kinship matrix.
simer.Data.Kin(
fileKin = TRUE,
fileMVP = "simer",
out = NULL,
method = "EMMA",
sep = "\t",
threads = 10,
verbose = TRUE
)
fileKin |
kinship that represents relationship among individuals, n * n matrix, n is sample size. |
fileMVP |
prefix for mvp format files. |
out |
prefix of output file name. |
method |
only"EMMA" method for now. |
sep |
seperator for Kinship file. |
threads |
the number of cpu. |
verbose |
whether to print detail. |
Build date: Apr 19, 2023 Last update: Apr 19, 2023
Output file: <out>.kin.bin <out>.kin.desc
Haohao Zhang and Dong Yin
# Get the prefix of genotype data
fileMVP <- system.file("extdata", "01bigmemory", "demo", package = "simer")
# Check map data
simer.Data.Kin(fileKin = TRUE, fileMVP = fileMVP, out = tempfile("outfile"))