selects {simer} | R Documentation |
Select individuals by combination of selection method and criterion.
selects(SP = NULL, verbose = TRUE)
SP |
a list of all simulation parameters. |
verbose |
whether to print detail. |
Build date: Sep 8, 2018 Last update: Apr 30, 2022
the function returns a list containing
the selected males and females.
if ps <= 1, fraction selected in selection of males and females; if ps > 1, ps is number of selected males and females.
whether the sort order is decreasing.
the selection criteria, it can be 'TBV', 'TGV', and 'pheno'.
the single-trait selection method, it can be 'ind', 'fam', 'infam', and 'comb'.
the multiple-trait selection method, it can be 'index', 'indcul', and 'tmd'.
the weight of each trait for multiple-trait selection.
the index of tandem selection for multiple-trait selection.
the percentage of goal more than the mean of scores of individuals.
the percentage of expected excellent individuals.
Dong Yin
# Generate annotation simulation parameters
SP <- param.annot(qtn.num = list(tr1 = 10))
# Generate genotype simulation parameters
SP <- param.geno(SP = SP, pop.marker = 1e4, pop.ind = 1e2)
# Generate phenotype simulation parameters
SP <- param.pheno(SP = SP, pop.ind = 100)
# Generate selection parameters
SP <- param.sel(SP = SP, sel.single = "ind")
# Run annotation simulation
SP <- annotation(SP)
# Run genotype simulation
SP <- genotype(SP)
# Run phenotype simulation
SP <- phenotype(SP)
# Run selection
SP <- selects(SP)