reproduces {simer} | R Documentation |
Population reproduction by different mate design.
reproduces(SP, ncpus = 0, verbose = TRUE)
SP |
a list of all simulation parameters. |
ncpus |
the number of threads used, if NULL, (logical core number - 1) is automatically used. |
verbose |
whether to print detail. |
Build date: Nov 14, 2018 Last update: Apr 29, 2022
the function returns a list containing
the generations of simulated population.
reproduction method, it consists of 'clone', 'dh', 'selfpol', 'randmate', 'randexself', 'assort', 'disassort', '2waycro', '3waycro', '4waycro', 'backcro', and 'userped'.
the male rate in the population.
the progeny number of an individual.
a list of genotype simulation parameters.
a list of phenotype simulation parameters.
Dong Yin
# Generate annotation simulation parameters
SP <- param.annot(qtn.num = list(tr1 = 10))
# Generate genotype simulation parameters
SP <- param.geno(SP = SP, pop.marker = 1e4, pop.ind = 1e2)
# Generate phenotype simulation parameters
SP <- param.pheno(SP = SP, pop.ind = 100)
# Generate selection parameters
SP <- param.sel(SP = SP, sel.single = "ind")
# Generate reproduction parameters
SP <- param.reprod(SP = SP, reprod.way = "randmate")
# Run annotation simulation
SP <- annotation(SP)
# Run genotype simulation
SP <- genotype(SP)
# Run phenotype simulation
SP <- phenotype(SP)
# Run selection
SP <- selects(SP)
# Run reproduction
SP <- reproduces(SP)