%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  VEwaningVariant
%global packver   1.4
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.4
Release:          1%{?dist}%{?buildtag}
Summary:          Vaccine Efficacy Over Time - Variant Aware

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildRequires:    R-CRAN-survival 
BuildRequires:    R-stats 
BuildRequires:    R-graphics 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-CRAN-Rcpp 
BuildRequires:    R-CRAN-RcppArmadillo 
BuildRequires:    R-methods 
Requires:         R-CRAN-survival 
Requires:         R-stats 
Requires:         R-graphics 
Requires:         R-CRAN-ggplot2 
Requires:         R-CRAN-Rcpp 
Requires:         R-CRAN-RcppArmadillo 
Requires:         R-methods 

%description
Implements methods for inference on potential waning of vaccine efficacy
and for estimation of vaccine efficacy at a user-specified time after
vaccination based on data from a randomized, double-blind,
placebo-controlled vaccine trial in which participants may be unblinded
and placebo subjects may be crossed over to the study vaccine.  The
methods also for variant stratification and allow adjustment for possible
confounding via inverse probability weighting through specification of
models for the trial entry process, unblinding mechanisms, and the
probability an unblinded placebo participant accepts study vaccine.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}