%global __brp_check_rpaths %{nil} %global __requires_exclude ^libmpi %global packname VEwaningVariant %global packver 1.4 %global rlibdir /usr/local/lib/R/library Name: R-CRAN-%{packname} Version: 1.4 Release: 1%{?dist}%{?buildtag} Summary: Vaccine Efficacy Over Time - Variant Aware License: GPL-2 URL: https://cran.r-project.org/package=%{packname} Source0: %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz BuildRequires: R-devel >= 3.5.0 Requires: R-core >= 3.5.0 BuildRequires: R-CRAN-survival BuildRequires: R-stats BuildRequires: R-graphics BuildRequires: R-CRAN-ggplot2 BuildRequires: R-CRAN-Rcpp BuildRequires: R-CRAN-RcppArmadillo BuildRequires: R-methods Requires: R-CRAN-survival Requires: R-stats Requires: R-graphics Requires: R-CRAN-ggplot2 Requires: R-CRAN-Rcpp Requires: R-CRAN-RcppArmadillo Requires: R-methods %description Implements methods for inference on potential waning of vaccine efficacy and for estimation of vaccine efficacy at a user-specified time after vaccination based on data from a randomized, double-blind, placebo-controlled vaccine trial in which participants may be unblinded and placebo subjects may be crossed over to the study vaccine. The methods also for variant stratification and allow adjustment for possible confounding via inverse probability weighting through specification of models for the trial entry process, unblinding mechanisms, and the probability an unblinded placebo participant accepts study vaccine. %prep %setup -q -c -n %{packname} # fix end of executable files find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \; # prevent binary stripping [ -d %{packname}/src ] && find %{packname}/src -type f -exec \ sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true [ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \ sed -i 's@-g0@@g' {} \; || true # don't allow local prefix in executable scripts find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \; %build %install mkdir -p %{buildroot}%{rlibdir} %{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname} test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) rm -f %{buildroot}%{rlibdir}/R.css # remove buildroot from installed files find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \; %files %{rlibdir}/%{packname}