%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  breathtestcore
%global packver   0.8.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.8.7
Release:          1%{?dist}%{?buildtag}
Summary:          Core Functions to Read and Fit 13c Time Series from Breath Tests

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


Recommends:       pandoc
BuildRequires:    R-devel >= 4.0.0
Requires:         R-core >= 4.0.0
BuildArch:        noarch
BuildRequires:    R-CRAN-tibble >= 3.0.0
BuildRequires:    R-CRAN-broom >= 0.7.0
BuildRequires:    R-CRAN-assertthat 
BuildRequires:    R-CRAN-dplyr 
BuildRequires:    R-CRAN-ggfittext 
BuildRequires:    R-CRAN-ggplot2 
BuildRequires:    R-graphics 
BuildRequires:    R-grid 
BuildRequires:    R-CRAN-MASS 
BuildRequires:    R-methods 
BuildRequires:    R-CRAN-multcomp 
BuildRequires:    R-CRAN-nlme 
BuildRequires:    R-CRAN-purrr 
BuildRequires:    R-CRAN-readr 
BuildRequires:    R-CRAN-readxl 
BuildRequires:    R-CRAN-signal 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-stringr 
BuildRequires:    R-CRAN-tidyr 
BuildRequires:    R-tools 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-xml2 
Requires:         R-CRAN-tibble >= 3.0.0
Requires:         R-CRAN-broom >= 0.7.0
Requires:         R-CRAN-assertthat 
Requires:         R-CRAN-dplyr 
Requires:         R-CRAN-ggfittext 
Requires:         R-CRAN-ggplot2 
Requires:         R-graphics 
Requires:         R-grid 
Requires:         R-CRAN-MASS 
Requires:         R-methods 
Requires:         R-CRAN-multcomp 
Requires:         R-CRAN-nlme 
Requires:         R-CRAN-purrr 
Requires:         R-CRAN-readr 
Requires:         R-CRAN-readxl 
Requires:         R-CRAN-signal 
Requires:         R-stats 
Requires:         R-CRAN-stringr 
Requires:         R-CRAN-tidyr 
Requires:         R-tools 
Requires:         R-utils 
Requires:         R-CRAN-xml2 

%description
Reads several formats of 13C data (IRIS/Wagner, BreathID) and CSV.
Creates artificial sample data for testing.  Fits Maes/Ghoos, Bluck-Coward
self-correcting formula using 'nls', 'nlme'. Methods to fit breath test
curves with Bayesian Stan methods are refactored to package
'breathteststan'. For a Shiny GUI, see package 'dmenne/breathtestshiny' on
github.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}