%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  celltrackR
%global packver   1.2.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          1.2.0
Release:          1%{?dist}%{?buildtag}
Summary:          Motion Trajectory Analysis

License:          GPL-2
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.5.0
Requires:         R-core >= 3.5.0
BuildArch:        noarch
BuildRequires:    R-stats 
BuildRequires:    R-grDevices 
BuildRequires:    R-graphics 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-ellipse 
BuildRequires:    R-CRAN-pracma 
Requires:         R-stats 
Requires:         R-grDevices 
Requires:         R-graphics 
Requires:         R-utils 
Requires:         R-CRAN-ellipse 
Requires:         R-CRAN-pracma 

%description
Methods for analyzing (cell) motion in two or three dimensions. Available
measures include displacement, confinement ratio, autocorrelation,
straightness, turning angle, and fractal dimension. Measures can be
applied to entire tracks, steps, or subtracks with varying length. While
the methodology has been developed for cell trajectory analysis, it is
applicable to anything that moves including animals, people, or vehicles.
Some of the methodology implemented in this packages was described by:
Beauchemin, Dixit, and Perelson (2007) <doi:10.4049/jimmunol.178.9.5505>,
Beltman, Maree, and de Boer (2009) <doi:10.1038/nri2638>, Gneiting and
Schlather (2004) <doi:10.1137/S0036144501394387>, Mokhtari, Mech,
Zitzmann, Hasenberg, Gunzer, and Figge (2013)
<doi:10.1371/journal.pone.0080808>, Moreau, Lemaitre, Terriac, Azar, Piel,
Lennon-Dumenil, and Bousso (2012) <doi:10.1016/j.immuni.2012.05.014>,
Textor, Peixoto, Henrickson, Sinn, von Andrian, and Westermann (2011)
<doi:10.1073/pnas.1102288108>, Textor, Sinn, and de Boer (2013)
<doi:10.1186/1471-2105-14-S6-S10>, Textor, Henrickson, Mandl, von Andrian,
Westermann, de Boer, and Beltman (2014)
<doi:10.1371/journal.pcbi.1003752>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}